BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254780786|ref|YP_003065199.1| ribosome-binding factor A
[Candidatus Liberibacter asiaticus str. psy62]
(128 letters)
Database: nr
14,124,377 sequences; 4,842,793,630 total letters
Searching..................................................done
Results from round 1
>gi|254780786|ref|YP_003065199.1| ribosome-binding factor A [Candidatus Liberibacter asiaticus str.
psy62]
gi|254040463|gb|ACT57259.1| ribosome-binding factor A [Candidatus Liberibacter asiaticus str.
psy62]
Length = 128
Score = 256 bits (655), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 128/128 (100%), Positives = 128/128 (100%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI
Sbjct: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
Query: 61 SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP
Sbjct: 61 SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
Query: 121 KIPVALEK 128
KIPVALEK
Sbjct: 121 KIPVALEK 128
>gi|315122008|ref|YP_004062497.1| ribosome-binding factor A [Candidatus Liberibacter solanacearum
CLso-ZC1]
gi|313495410|gb|ADR52009.1| ribosome-binding factor A [Candidatus Liberibacter solanacearum
CLso-ZC1]
Length = 132
Score = 199 bits (507), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 97/122 (79%), Positives = 108/122 (88%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
MKNK+ SRRALRVGEEVRSALMWVILNNEFQD LI RD+ISISEVCMSVDLRVATVY+
Sbjct: 1 MKNKSSVPSRRALRVGEEVRSALMWVILNNEFQDNLIHRDIISISEVCMSVDLRVATVYV 60
Query: 61 SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
SLP DVSPD VI AL CN KF+RGRI +SLRNL+Y+PELRFRYDTSLQ+YWK++ LMC
Sbjct: 61 SLPPDVSPDVVIDALKCNNKFLRGRISQSLRNLKYIPELRFRYDTSLQNYWKIDTLMCSS 120
Query: 121 KI 122
K+
Sbjct: 121 KV 122
>gi|222147150|ref|YP_002548107.1| ribosome-binding factor A [Agrobacterium vitis S4]
gi|254789726|sp|B9JYK7|RBFA_AGRVS RecName: Full=Ribosome-binding factor A
gi|221734140|gb|ACM35103.1| ribosome-binding factor A [Agrobacterium vitis S4]
Length = 137
Score = 125 bits (313), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 66/122 (54%), Positives = 88/122 (72%), Gaps = 2/122 (1%)
Query: 2 KNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS 61
K N S+R LRVGE+VR+A+ V+ E +D LI + VISISEV MS DL+VAT Y+S
Sbjct: 3 KPTNSAPSQRMLRVGEQVRAAITQVLQRGEVRDDLIEKTVISISEVRMSTDLKVATAYVS 62
Query: 62 LPLDVSP-DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
PL VS D VI+ALN + K+IRGRIG LR ++Y+PE+RFR DTS +Y K++AL+ P
Sbjct: 63 -PLGVSDHDTVIAALNRHAKYIRGRIGGQLRQMKYMPEVRFRDDTSFDNYQKIDALLRSP 121
Query: 121 KI 122
++
Sbjct: 122 EV 123
>gi|15887440|ref|NP_353121.1| ribosome-binding factor A [Agrobacterium tumefaciens str. C58]
gi|22096033|sp|Q8UJ52|RBFA_AGRT5 RecName: Full=Ribosome-binding factor A
gi|15154953|gb|AAK85906.1| ribosome-binding factor A [Agrobacterium tumefaciens str. C58]
Length = 138
Score = 117 bits (292), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 60/115 (52%), Positives = 84/115 (73%), Gaps = 2/115 (1%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
S+R LRVGE+VR+AL ++ E +D LI VISISEV MS DL++AT Y++ PL V+
Sbjct: 10 SQRMLRVGEQVRAALTQILQRGEVRDDLIEGTVISISEVRMSPDLKIATAYVT-PLGVAD 68
Query: 69 DR-VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
+ISALN + KF+RGR+G LR ++Y+PELRFR DTS +Y K++AL+ P++
Sbjct: 69 HTDIISALNRHAKFMRGRLGPQLRQMKYMPELRFRDDTSFDNYQKIDALLRSPEV 123
>gi|325291530|ref|YP_004277394.1| Ribosome-binding factor A [Agrobacterium sp. H13-3]
gi|325059383|gb|ADY63074.1| Ribosome-binding factor A [Agrobacterium sp. H13-3]
Length = 138
Score = 116 bits (290), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 59/115 (51%), Positives = 84/115 (73%), Gaps = 2/115 (1%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
S+R LRVGE+VR+AL ++ E +D LI VISISEV MS DL++AT Y++ PL V+
Sbjct: 10 SQRMLRVGEQVRAALTQILQRGEVRDDLIEGTVISISEVRMSPDLKIATAYVT-PLGVAD 68
Query: 69 DR-VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
+I+ALN + KF+RGR+G LR ++Y+PELRFR DTS +Y K++AL+ P++
Sbjct: 69 HTDIITALNRHAKFMRGRLGPQLRQMKYMPELRFRDDTSFDNYQKIDALLRSPEV 123
>gi|222084325|ref|YP_002542854.1| ribosome-binding factor A [Agrobacterium radiobacter K84]
gi|221721773|gb|ACM24929.1| ribosome-binding factor A [Agrobacterium radiobacter K84]
Length = 139
Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 58/115 (50%), Positives = 85/115 (73%), Gaps = 2/115 (1%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
S+R LRVGE+VR+A+ V+ E +D LI R VISISEV MS DL++AT +++ PL V+
Sbjct: 11 SQRMLRVGEQVRAAITQVLQRGEVRDDLIERTVISISEVRMSPDLKIATAFVT-PLGVAD 69
Query: 69 -DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
D +I LN + K+IRGR+G+ LR ++Y+PE+RFR DTS +Y K++AL+ P++
Sbjct: 70 HDLIIDTLNRHTKYIRGRLGQHLRQMKYMPEIRFRDDTSFDNYKKIDALLRSPEV 124
>gi|227824072|ref|YP_002828045.1| ribosome-binding factor A [Sinorhizobium fredii NGR234]
gi|254789759|sp|C3MC67|RBFA_RHISN RecName: Full=Ribosome-binding factor A
gi|227343074|gb|ACP27292.1| ribosome-binding factor A [Sinorhizobium fredii NGR234]
Length = 135
Score = 115 bits (287), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 59/115 (51%), Positives = 84/115 (73%), Gaps = 2/115 (1%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
S+R LRVGE+VR+A+ V+ E +D LI + VISISEV MS DL++AT Y++ PL V+
Sbjct: 10 SQRMLRVGEQVRAAITQVLQRGEVRDPLIEKTVISISEVRMSPDLKIATAYVT-PLGVAD 68
Query: 69 DR-VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
VI ALN + KFIRGR+G LR ++Y+P++RFR DTS +Y K++AL+ P++
Sbjct: 69 HAAVIEALNKHAKFIRGRLGPQLRQMKYMPDVRFRDDTSFDNYQKIDALLRSPEV 123
>gi|239833214|ref|ZP_04681543.1| ribosome-binding factor A [Ochrobactrum intermedium LMG 3301]
gi|239825481|gb|EEQ97049.1| ribosome-binding factor A [Ochrobactrum intermedium LMG 3301]
Length = 171
Score = 114 bits (284), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 59/125 (47%), Positives = 83/125 (66%), Gaps = 4/125 (3%)
Query: 2 KNKNPKNS----RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVAT 57
++ +PK S +R LRVGE+VR AL V+ E +D LI+R VIS+SEV MS DL++AT
Sbjct: 24 RSPDPKGSGGLSQRQLRVGEQVRHALAQVLQRGEIRDDLIARTVISVSEVRMSPDLKIAT 83
Query: 58 VYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+I+ D VI AL N KFIRGR+ SL ++Y+PE RFR DTS ++ K++AL+
Sbjct: 84 CFITPLGDADTQAVIKALAANAKFIRGRMAPSLSQMKYMPEFRFRADTSFDNFSKIDALL 143
Query: 118 CLPKI 122
P++
Sbjct: 144 RSPEV 148
>gi|218682086|ref|ZP_03529687.1| ribosome-binding factor A [Rhizobium etli CIAT 894]
Length = 134
Score = 114 bits (284), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 59/115 (51%), Positives = 83/115 (72%), Gaps = 2/115 (1%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
S+R LRVGE+VR+A+ V+ E +D +I VISISEV MS DL++AT Y++ PL VS
Sbjct: 10 SQRMLRVGEQVRAAITQVLQRGEVRDDVIEATVISISEVRMSPDLKIATAYVT-PLGVSD 68
Query: 69 DR-VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
VI ALN + KFIRGR+G+ LR ++Y+PE+RFR DTS +Y K++ L+ P++
Sbjct: 69 HSIVIGALNRHAKFIRGRLGQQLRQMKYMPEVRFRDDTSFDNYKKIDELLRSPEV 123
>gi|17988247|ref|NP_540881.1| ribosome-binding factor A [Brucella melitensis bv. 1 str. 16M]
gi|17984014|gb|AAL53145.1| ribosome-binding factor a [Brucella melitensis bv. 1 str. 16M]
Length = 171
Score = 113 bits (283), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 77/114 (67%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
S+R LRVGE+VR AL V+ E +D LI R VIS+SEV MS DL++AT +I+ P
Sbjct: 35 SQRQLRVGEQVRHALAQVLQRGEIRDDLIERTVISVSEVRMSPDLKIATCFITPLGSADP 94
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
VI AL + KFIRGR+ SL ++Y+PE RFR DTS ++ K++AL+ P++
Sbjct: 95 QAVIKALASHAKFIRGRVAPSLAQMKYMPEFRFRPDTSFDNFSKIDALLRFPEV 148
>gi|225853591|ref|YP_002733824.1| ribosome-binding factor A [Brucella melitensis ATCC 23457]
gi|256045769|ref|ZP_05448647.1| ribosome-binding factor A [Brucella melitensis bv. 1 str. Rev.1]
gi|256112489|ref|ZP_05453410.1| ribosome-binding factor A [Brucella melitensis bv. 3 str. Ether]
gi|256264966|ref|ZP_05467498.1| ribosome-binding factor A [Brucella melitensis bv. 2 str. 63/9]
gi|260563065|ref|ZP_05833551.1| ribosome-binding factor A [Brucella melitensis bv. 1 str. 16M]
gi|265992186|ref|ZP_06104743.1| ribosome-binding factor A [Brucella melitensis bv. 1 str. Rev.1]
gi|265993925|ref|ZP_06106482.1| ribosome-binding factor A [Brucella melitensis bv. 3 str. Ether]
gi|20978585|sp|Q8YEB4|RBFA_BRUME RecName: Full=Ribosome-binding factor A
gi|254789736|sp|C0RG48|RBFA_BRUMB RecName: Full=Ribosome-binding factor A
gi|225641956|gb|ACO01870.1| ribosome-binding factor A [Brucella melitensis ATCC 23457]
gi|260153081|gb|EEW88173.1| ribosome-binding factor A [Brucella melitensis bv. 1 str. 16M]
gi|262764906|gb|EEZ10827.1| ribosome-binding factor A [Brucella melitensis bv. 3 str. Ether]
gi|263003252|gb|EEZ15545.1| ribosome-binding factor A [Brucella melitensis bv. 1 str. Rev.1]
gi|263095449|gb|EEZ19050.1| ribosome-binding factor A [Brucella melitensis bv. 2 str. 63/9]
Length = 150
Score = 113 bits (282), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 77/114 (67%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
S+R LRVGE+VR AL V+ E +D LI R VIS+SEV MS DL++AT +I+ P
Sbjct: 14 SQRQLRVGEQVRHALAQVLQRGEIRDDLIERTVISVSEVRMSPDLKIATCFITPLGSADP 73
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
VI AL + KFIRGR+ SL ++Y+PE RFR DTS ++ K++AL+ P++
Sbjct: 74 QAVIKALASHAKFIRGRVAPSLAQMKYMPEFRFRPDTSFDNFSKIDALLRFPEV 127
>gi|241207068|ref|YP_002978164.1| ribosome-binding factor A [Rhizobium leguminosarum bv. trifolii
WSM1325]
gi|240860958|gb|ACS58625.1| ribosome-binding factor A [Rhizobium leguminosarum bv. trifolii
WSM1325]
Length = 134
Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 58/115 (50%), Positives = 82/115 (71%), Gaps = 2/115 (1%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
S+R LR+GE+VR+AL V+ E +D +I VISISEV MS DL++AT Y++ PL VS
Sbjct: 10 SQRMLRIGEQVRAALTQVLQRGEVRDEIIEATVISISEVRMSTDLKIATAYVT-PLGVSD 68
Query: 69 DR-VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
VI ALN + +FIRGR+G LR ++Y+PE+RFR DTS +Y K++ L+ P++
Sbjct: 69 HSIVIKALNRHARFIRGRLGPQLRQMKYMPEVRFRDDTSFDNYKKIDELLRSPEV 123
>gi|326410164|gb|ADZ67229.1| ribosome-binding factor A [Brucella melitensis M28]
Length = 192
Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 77/114 (67%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
S+R LRVGE+VR AL V+ E +D LI R VIS+SEV MS DL++AT +I+ P
Sbjct: 56 SQRQLRVGEQVRHALAQVLQRGEIRDDLIERTVISVSEVRMSPDLKIATCFITPLGSADP 115
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
VI AL + KFIRGR+ SL ++Y+PE RFR DTS ++ K++AL+ P++
Sbjct: 116 QAVIKALASHAKFIRGRVAPSLAQMKYMPEFRFRPDTSFDNFSKIDALLRFPEV 169
>gi|326539882|gb|ADZ88097.1| ribosome-binding factor A [Brucella melitensis M5-90]
Length = 197
Score = 112 bits (281), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 77/114 (67%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
S+R LRVGE+VR AL V+ E +D LI R VIS+SEV MS DL++AT +I+ P
Sbjct: 61 SQRQLRVGEQVRHALAQVLQRGEIRDDLIERTVISVSEVRMSPDLKIATCFITPLGSADP 120
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
VI AL + KFIRGR+ SL ++Y+PE RFR DTS ++ K++AL+ P++
Sbjct: 121 QAVIKALASHAKFIRGRVAPSLAQMKYMPEFRFRPDTSFDNFSKIDALLRFPEV 174
>gi|86355775|ref|YP_467667.1| ribosome-binding factor A [Rhizobium etli CFN 42]
gi|123513437|sp|Q2KDZ6|RBFA_RHIEC RecName: Full=Ribosome-binding factor A
gi|86279877|gb|ABC88940.1| ribosome binding factor A, rRNA processing protein [Rhizobium etli
CFN 42]
Length = 136
Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 59/115 (51%), Positives = 82/115 (71%), Gaps = 2/115 (1%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
S+R LRVGE+VR+A+ V+ E +D +I VISISEV MS DL++AT Y++ PL VS
Sbjct: 10 SQRMLRVGEQVRAAITQVLQRGEVRDDIIEATVISISEVRMSPDLKIATAYVT-PLGVSD 68
Query: 69 DR-VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
VI ALN + KFIRGR+G LR ++Y+PE+RFR DTS +Y K++ L+ P++
Sbjct: 69 HSIVIEALNRHAKFIRGRLGPQLRQMKYMPEVRFRDDTSFDNYKKIDELLRSPEV 123
>gi|254713434|ref|ZP_05175245.1| ribosome-binding factor A [Brucella ceti M644/93/1]
gi|254716209|ref|ZP_05178020.1| ribosome-binding factor A [Brucella ceti M13/05/1]
gi|261217983|ref|ZP_05932264.1| ribosome-binding factor A [Brucella ceti M13/05/1]
gi|261321167|ref|ZP_05960364.1| ribosome-binding factor A [Brucella ceti M644/93/1]
gi|260923072|gb|EEX89640.1| ribosome-binding factor A [Brucella ceti M13/05/1]
gi|261293857|gb|EEX97353.1| ribosome-binding factor A [Brucella ceti M644/93/1]
Length = 150
Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 77/114 (67%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
S+R LRVGE+VR AL V+ E +D LI R VIS+SEV MS DL++AT +I+ P
Sbjct: 14 SQRQLRVGEQVRHALAQVLQRGEIRDDLIERTVISVSEVRMSPDLKIATCFITPLGSADP 73
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
VI AL + KFIRGR+ SL ++Y+PE RFR DTS ++ K++AL+ P++
Sbjct: 74 QAVIKALASHAKFIRGRVAPSLAQMKYMPEFRFRPDTSFDNFSKIDALLRSPEV 127
>gi|218461916|ref|ZP_03502007.1| ribosome-binding factor A [Rhizobium etli Kim 5]
Length = 134
Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 59/115 (51%), Positives = 82/115 (71%), Gaps = 2/115 (1%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
S+R LRVGE+VR+A+ V+ E +D +I VISISEV MS DL++AT Y++ PL VS
Sbjct: 10 SQRMLRVGEQVRAAITQVLQRGEVRDDIIEATVISISEVRMSPDLKIATAYVT-PLGVSD 68
Query: 69 DR-VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
VI ALN + KFIRGR+G LR ++Y+PE+RFR DTS +Y K++ L+ P++
Sbjct: 69 HSIVIEALNRHAKFIRGRLGPQLRQMKYMPEVRFRDDTSFDNYKKIDELLRSPEV 123
>gi|190889784|ref|YP_001976326.1| ribosome binding factor A, rRNA processing protein [Rhizobium etli
CIAT 652]
gi|238692530|sp|B3PXE2|RBFA_RHIE6 RecName: Full=Ribosome-binding factor A
gi|190695063|gb|ACE89148.1| ribosome binding factor A, rRNA processing protein [Rhizobium etli
CIAT 652]
Length = 134
Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 59/115 (51%), Positives = 82/115 (71%), Gaps = 2/115 (1%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
S+R LRVGE+VR+A+ V+ E +D +I VISISEV MS DL++AT Y++ PL VS
Sbjct: 10 SQRMLRVGEQVRAAITQVLQRGEVRDDIIEATVISISEVRMSPDLKIATAYVT-PLGVSD 68
Query: 69 DR-VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
VI ALN + KFIRGR+G LR ++Y+PE+RFR DTS +Y K++ L+ P++
Sbjct: 69 HSIVIEALNRHAKFIRGRLGPQLRQMKYMPEVRFRDDTSFDNYKKIDELLRSPEV 123
>gi|218662345|ref|ZP_03518275.1| ribosome-binding factor A [Rhizobium etli IE4771]
gi|218673741|ref|ZP_03523410.1| ribosome-binding factor A [Rhizobium etli GR56]
Length = 134
Score = 112 bits (279), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 59/115 (51%), Positives = 82/115 (71%), Gaps = 2/115 (1%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
S+R LRVGE+VR+A+ V+ E +D +I VISISEV MS DL++AT Y++ PL VS
Sbjct: 10 SQRMLRVGEQVRAAITQVLQRGEVRDDVIEATVISISEVRMSPDLKIATAYVT-PLGVSD 68
Query: 69 DR-VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
VI ALN + KFIRGR+G LR ++Y+PE+RFR DTS +Y K++ L+ P++
Sbjct: 69 HSIVIEALNRHAKFIRGRLGPQLRQMKYMPEVRFRDDTSFDNYKKIDELLRSPEV 123
>gi|297247390|ref|ZP_06931108.1| ribosome-binding factor A [Brucella abortus bv. 5 str. B3196]
gi|297174559|gb|EFH33906.1| ribosome-binding factor A [Brucella abortus bv. 5 str. B3196]
Length = 171
Score = 112 bits (279), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 77/114 (67%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
S+R LRVGE+VR AL V+ E +D LI R VIS+SEV MS DL++AT +I+ P
Sbjct: 35 SQRQLRVGEQVRHALAQVLQRGEIRDDLIERTVISVSEVRMSPDLKIATCFITPLGSADP 94
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
VI AL + KFIRGR+ SL ++Y+PE RFR DTS ++ K++AL+ P++
Sbjct: 95 QAVIKALASHAKFIRGRVAPSLAQMKYMPEFRFRPDTSFDNFSKIDALLRSPEV 148
>gi|23503014|ref|NP_699141.1| ribosome-binding factor A [Brucella suis 1330]
gi|62291003|ref|YP_222796.1| ribosome-binding factor A [Brucella abortus bv. 1 str. 9-941]
gi|82700912|ref|YP_415486.1| ribosome-binding factor A [Brucella melitensis biovar Abortus 2308]
gi|161620074|ref|YP_001593961.1| ribosome-binding factor A [Brucella canis ATCC 23365]
gi|189025215|ref|YP_001935983.1| ribosome-binding factor A [Brucella abortus S19]
gi|254690297|ref|ZP_05153551.1| ribosome-binding factor A [Brucella abortus bv. 6 str. 870]
gi|254694785|ref|ZP_05156613.1| ribosome-binding factor A [Brucella abortus bv. 3 str. Tulya]
gi|254696413|ref|ZP_05158241.1| ribosome-binding factor A [Brucella abortus bv. 2 str. 86/8/59]
gi|254700797|ref|ZP_05162625.1| ribosome-binding factor A [Brucella suis bv. 5 str. 513]
gi|254705165|ref|ZP_05166993.1| ribosome-binding factor A [Brucella suis bv. 3 str. 686]
gi|254707319|ref|ZP_05169147.1| ribosome-binding factor A [Brucella pinnipedialis M163/99/10]
gi|254709141|ref|ZP_05170952.1| ribosome-binding factor A [Brucella pinnipedialis B2/94]
gi|254718204|ref|ZP_05180015.1| ribosome-binding factor A [Brucella sp. 83/13]
gi|254731326|ref|ZP_05189904.1| ribosome-binding factor A [Brucella abortus bv. 4 str. 292]
gi|256030666|ref|ZP_05444280.1| ribosome-binding factor A [Brucella pinnipedialis M292/94/1]
gi|256158667|ref|ZP_05456550.1| ribosome-binding factor A [Brucella ceti M490/95/1]
gi|256254071|ref|ZP_05459607.1| ribosome-binding factor A [Brucella ceti B1/94]
gi|256258550|ref|ZP_05464086.1| ribosome-binding factor A [Brucella abortus bv. 9 str. C68]
gi|256370561|ref|YP_003108072.1| ribosome-binding factor A [Brucella microti CCM 4915]
gi|260169570|ref|ZP_05756381.1| ribosome-binding factor A [Brucella sp. F5/99]
gi|260546266|ref|ZP_05822006.1| ribosome-binding factor A [Brucella abortus NCTC 8038]
gi|260567367|ref|ZP_05837837.1| ribosome-binding factor A [Brucella suis bv. 4 str. 40]
gi|260755837|ref|ZP_05868185.1| ribosome-binding factor A [Brucella abortus bv. 6 str. 870]
gi|260759060|ref|ZP_05871408.1| ribosome-binding factor A [Brucella abortus bv. 4 str. 292]
gi|260760785|ref|ZP_05873128.1| ribosome-binding factor A [Brucella abortus bv. 2 str. 86/8/59]
gi|260884862|ref|ZP_05896476.1| ribosome-binding factor A [Brucella abortus bv. 9 str. C68]
gi|261215112|ref|ZP_05929393.1| ribosome-binding factor A [Brucella abortus bv. 3 str. Tulya]
gi|261221212|ref|ZP_05935493.1| ribosome-binding factor A [Brucella ceti B1/94]
gi|261314801|ref|ZP_05953998.1| ribosome-binding factor A [Brucella pinnipedialis M163/99/10]
gi|261316640|ref|ZP_05955837.1| ribosome-binding factor A [Brucella pinnipedialis B2/94]
gi|261751305|ref|ZP_05995014.1| ribosome-binding factor A [Brucella suis bv. 5 str. 513]
gi|261755870|ref|ZP_05999579.1| ribosome-binding factor A [Brucella suis bv. 3 str. 686]
gi|261759097|ref|ZP_06002806.1| ribosome-binding factor A [Brucella sp. F5/99]
gi|265983161|ref|ZP_06095896.1| ribosome-binding factor A [Brucella sp. 83/13]
gi|265987712|ref|ZP_06100269.1| ribosome-binding factor A [Brucella pinnipedialis M292/94/1]
gi|265997173|ref|ZP_06109730.1| ribosome-binding factor A [Brucella ceti M490/95/1]
gi|294851391|ref|ZP_06792064.1| ribosome-binding factor A [Brucella sp. NVSL 07-0026]
gi|306839944|ref|ZP_07472738.1| ribosome-binding factor A [Brucella sp. NF 2653]
gi|306843583|ref|ZP_07476184.1| ribosome-binding factor A [Brucella sp. BO1]
gi|29427805|sp|Q8FXT1|RBFA_BRUSU RecName: Full=Ribosome-binding factor A
gi|75496017|sp|Q57A99|RBFA_BRUAB RecName: Full=Ribosome-binding factor A
gi|123547259|sp|Q2YQR6|RBFA_BRUA2 RecName: Full=Ribosome-binding factor A
gi|172048298|sp|A5VTB3|RBFA_BRUO2 RecName: Full=Ribosome-binding factor A
gi|189039529|sp|A9M9Z5|RBFA_BRUC2 RecName: Full=Ribosome-binding factor A
gi|238689419|sp|B2S9F7|RBFA_BRUA1 RecName: Full=Ribosome-binding factor A
gi|23349055|gb|AAN31056.1| ribosome-binding factor A [Brucella suis 1330]
gi|62197135|gb|AAX75435.1| RbfA, ribosome-binding factor A [Brucella abortus bv. 1 str. 9-941]
gi|82617013|emb|CAJ12122.1| Ribosome-binding factor A [Brucella melitensis biovar Abortus 2308]
gi|161336885|gb|ABX63190.1| ribosome-binding factor A [Brucella canis ATCC 23365]
gi|189020787|gb|ACD73509.1| Ribosome-binding factor A [Brucella abortus S19]
gi|256000724|gb|ACU49123.1| ribosome-binding factor A [Brucella microti CCM 4915]
gi|260096373|gb|EEW80249.1| ribosome-binding factor A [Brucella abortus NCTC 8038]
gi|260156885|gb|EEW91965.1| ribosome-binding factor A [Brucella suis bv. 4 str. 40]
gi|260669378|gb|EEX56318.1| ribosome-binding factor A [Brucella abortus bv. 4 str. 292]
gi|260671217|gb|EEX58038.1| ribosome-binding factor A [Brucella abortus bv. 2 str. 86/8/59]
gi|260675945|gb|EEX62766.1| ribosome-binding factor A [Brucella abortus bv. 6 str. 870]
gi|260874390|gb|EEX81459.1| ribosome-binding factor A [Brucella abortus bv. 9 str. C68]
gi|260916719|gb|EEX83580.1| ribosome-binding factor A [Brucella abortus bv. 3 str. Tulya]
gi|260919796|gb|EEX86449.1| ribosome-binding factor A [Brucella ceti B1/94]
gi|261295863|gb|EEX99359.1| ribosome-binding factor A [Brucella pinnipedialis B2/94]
gi|261303827|gb|EEY07324.1| ribosome-binding factor A [Brucella pinnipedialis M163/99/10]
gi|261739081|gb|EEY27077.1| ribosome-binding factor A [Brucella sp. F5/99]
gi|261741058|gb|EEY28984.1| ribosome-binding factor A [Brucella suis bv. 5 str. 513]
gi|261745623|gb|EEY33549.1| ribosome-binding factor A [Brucella suis bv. 3 str. 686]
gi|262551641|gb|EEZ07631.1| ribosome-binding factor A [Brucella ceti M490/95/1]
gi|264659909|gb|EEZ30170.1| ribosome-binding factor A [Brucella pinnipedialis M292/94/1]
gi|264661753|gb|EEZ32014.1| ribosome-binding factor A [Brucella sp. 83/13]
gi|294819980|gb|EFG36979.1| ribosome-binding factor A [Brucella sp. NVSL 07-0026]
gi|306276274|gb|EFM57974.1| ribosome-binding factor A [Brucella sp. BO1]
gi|306404908|gb|EFM61193.1| ribosome-binding factor A [Brucella sp. NF 2653]
Length = 150
Score = 112 bits (279), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 77/114 (67%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
S+R LRVGE+VR AL V+ E +D LI R VIS+SEV MS DL++AT +I+ P
Sbjct: 14 SQRQLRVGEQVRHALAQVLQRGEIRDDLIERTVISVSEVRMSPDLKIATCFITPLGSADP 73
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
VI AL + KFIRGR+ SL ++Y+PE RFR DTS ++ K++AL+ P++
Sbjct: 74 QAVIKALASHAKFIRGRVAPSLAQMKYMPEFRFRPDTSFDNFSKIDALLRSPEV 127
>gi|150398628|ref|YP_001329095.1| ribosome-binding factor A [Sinorhizobium medicae WSM419]
gi|166219408|sp|A6UF30|RBFA_SINMW RecName: Full=Ribosome-binding factor A
gi|150030143|gb|ABR62260.1| ribosome-binding factor A [Sinorhizobium medicae WSM419]
Length = 134
Score = 112 bits (279), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 59/128 (46%), Positives = 90/128 (70%), Gaps = 2/128 (1%)
Query: 2 KNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS 61
K+ + S+R LRVGE+VR+A+ V+ + +D LI VISISEV MS DL++AT Y++
Sbjct: 3 KSTSSAPSQRMLRVGEQVRAAITQVLQRGDVRDPLIESTVISISEVRMSPDLKLATAYVT 62
Query: 62 LPLDVSPDR-VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
PL V+ VI ALN + KFIRGR+G LR ++Y+P++RFR DTS ++Y K+++L+ P
Sbjct: 63 -PLGVADHAAVIEALNKHAKFIRGRLGPHLRQMKYMPDVRFRDDTSFENYQKIDSLLRSP 121
Query: 121 KIPVALEK 128
++ L++
Sbjct: 122 EVSRDLDR 129
>gi|15963993|ref|NP_384346.1| ribosome-binding factor A [Sinorhizobium meliloti 1021]
gi|307306405|ref|ZP_07586149.1| ribosome-binding factor A [Sinorhizobium meliloti BL225C]
gi|307319292|ref|ZP_07598721.1| ribosome-binding factor A [Sinorhizobium meliloti AK83]
gi|20978620|sp|Q92SW3|RBFA_RHIME RecName: Full=Ribosome-binding factor A
gi|15073169|emb|CAC41677.1| Probable ribosome-binding factor A, rRNA processing protein
[Sinorhizobium meliloti 1021]
gi|306895128|gb|EFN25885.1| ribosome-binding factor A [Sinorhizobium meliloti AK83]
gi|306902247|gb|EFN32844.1| ribosome-binding factor A [Sinorhizobium meliloti BL225C]
Length = 135
Score = 112 bits (279), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/128 (46%), Positives = 88/128 (68%), Gaps = 2/128 (1%)
Query: 2 KNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS 61
K+ + S+R LRVGE+VR+A+ V+ E D LI VISISEV MS DL++AT Y++
Sbjct: 3 KSTSSAPSQRMLRVGEQVRAAITQVLQRGEVLDPLIENTVISISEVRMSPDLKIATAYVT 62
Query: 62 LPLDVSPDR-VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
PL V+ VI ALN + KFIRGR+G LR ++Y+P++RFR DTS +Y K+++L+ P
Sbjct: 63 -PLGVADHAAVIEALNKHAKFIRGRLGPQLRQMKYMPDVRFRDDTSFDNYQKIDSLLRSP 121
Query: 121 KIPVALEK 128
++ L++
Sbjct: 122 EVSRDLDR 129
>gi|148560113|ref|YP_001259960.1| ribosome-binding factor A [Brucella ovis ATCC 25840]
gi|225626531|ref|ZP_03784570.1| ribosome-binding factor A [Brucella ceti str. Cudo]
gi|237816506|ref|ZP_04595499.1| ribosome-binding factor A [Brucella abortus str. 2308 A]
gi|148371370|gb|ABQ61349.1| ribosome-binding factor A [Brucella ovis ATCC 25840]
gi|225618188|gb|EEH15231.1| ribosome-binding factor A [Brucella ceti str. Cudo]
gi|237788573|gb|EEP62788.1| ribosome-binding factor A [Brucella abortus str. 2308 A]
Length = 197
Score = 111 bits (278), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 77/114 (67%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
S+R LRVGE+VR AL V+ E +D LI R VIS+SEV MS DL++AT +I+ P
Sbjct: 61 SQRQLRVGEQVRHALAQVLQRGEIRDDLIERTVISVSEVRMSPDLKIATCFITPLGSADP 120
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
VI AL + KFIRGR+ SL ++Y+PE RFR DTS ++ K++AL+ P++
Sbjct: 121 QAVIKALASHAKFIRGRVAPSLAQMKYMPEFRFRPDTSFDNFSKIDALLRSPEV 174
>gi|209551637|ref|YP_002283554.1| ribosome-binding factor A [Rhizobium leguminosarum bv. trifolii
WSM2304]
gi|226723606|sp|B5ZW28|RBFA_RHILW RecName: Full=Ribosome-binding factor A
gi|209537393|gb|ACI57328.1| ribosome-binding factor A [Rhizobium leguminosarum bv. trifolii
WSM2304]
Length = 134
Score = 111 bits (277), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 57/115 (49%), Positives = 83/115 (72%), Gaps = 2/115 (1%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
S+R LRVGE+VR+A+ V+ E +D +I VISISEV MS DL++AT Y++ PL VS
Sbjct: 10 SQRMLRVGEQVRAAITQVLQRGEVRDDVIEATVISISEVRMSPDLKIATAYVT-PLGVSD 68
Query: 69 DRV-ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
V I ALN + ++IRGR+G+ LR ++Y+PE+RFR DTS +Y K++ L+ P++
Sbjct: 69 HSVVIEALNRHARYIRGRLGQQLRQMKYMPEVRFRDDTSFDNYKKIDELLRSPEV 123
>gi|256060126|ref|ZP_05450308.1| ribosome-binding factor A [Brucella neotomae 5K33]
gi|261324103|ref|ZP_05963300.1| ribosome-binding factor A [Brucella neotomae 5K33]
gi|261300083|gb|EEY03580.1| ribosome-binding factor A [Brucella neotomae 5K33]
Length = 150
Score = 110 bits (276), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 77/114 (67%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
S+R LRVGE+VR AL V+ E +D LI R VIS+SEV MS DL++AT +I+ P
Sbjct: 14 SQRQLRVGEQVRHALAQVLQRGEIRDDLIERIVISVSEVRMSPDLKIATCFIAPLGSADP 73
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
VI AL + KFIRGR+ SL ++Y+PE RFR DTS ++ K++AL+ P++
Sbjct: 74 QAVIKALASHAKFIRGRVAPSLAQMKYMPEFRFRPDTSFDNFSKIDALLRSPEV 127
>gi|153008082|ref|YP_001369297.1| ribosome-binding factor A [Ochrobactrum anthropi ATCC 49188]
gi|166219382|sp|A6WWW4|RBFA_OCHA4 RecName: Full=Ribosome-binding factor A
gi|151559970|gb|ABS13468.1| ribosome-binding factor A [Ochrobactrum anthropi ATCC 49188]
Length = 150
Score = 110 bits (275), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 57/125 (45%), Positives = 82/125 (65%), Gaps = 4/125 (3%)
Query: 2 KNKNPKNS----RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVAT 57
++ +PK S +R LRVGE+VR AL V+ E +D LI+ VIS+SEV MS DL++AT
Sbjct: 3 RSPDPKGSGGLSQRQLRVGEQVRHALAQVLQRGEIRDDLIAHTVISVSEVRMSPDLKIAT 62
Query: 58 VYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+I+ + VI AL N KFIRGR+ SL ++Y+PE RFR DTS ++ K++AL+
Sbjct: 63 CFITPLGNADTQAVIKALAANAKFIRGRMAPSLSQMKYMPEFRFRADTSFDNFSKIDALL 122
Query: 118 CLPKI 122
P++
Sbjct: 123 RSPEV 127
>gi|163844179|ref|YP_001628584.1| ribosome-binding factor A [Brucella suis ATCC 23445]
gi|189039530|sp|B0CK12|RBFA_BRUSI RecName: Full=Ribosome-binding factor A
gi|163674902|gb|ABY39013.1| ribosome-binding factor A [Brucella suis ATCC 23445]
Length = 150
Score = 110 bits (275), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 76/114 (66%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
S+R LRVGE+VR L V+ E +D LI R VIS+SEV MS DL++AT +I+ P
Sbjct: 14 SQRQLRVGEQVRHTLAQVLQRGEIRDDLIERTVISVSEVRMSPDLKIATCFITPLGSADP 73
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
VI AL + KFIRGR+ SL ++Y+PE RFR DTS ++ K++AL+ P++
Sbjct: 74 QAVIKALASHAKFIRGRVAPSLAQMKYMPEFRFRPDTSFDNFSKIDALLRSPEV 127
>gi|116249890|ref|YP_765728.1| ribosome-binding factor A [Rhizobium leguminosarum bv. viciae 3841]
gi|166219398|sp|Q1MN40|RBFA_RHIL3 RecName: Full=Ribosome-binding factor A
gi|115254538|emb|CAK05612.1| putative ribosome-binding factor protein [Rhizobium leguminosarum
bv. viciae 3841]
Length = 134
Score = 109 bits (272), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 56/115 (48%), Positives = 82/115 (71%), Gaps = 2/115 (1%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
S+R LR+GE+VR+A+ V+ E +D +I VIS+SEV MS DL++AT Y++ PL VS
Sbjct: 10 SQRMLRIGEQVRAAITQVLQRGEVRDDVIEATVISVSEVRMSPDLKIATAYVT-PLGVSD 68
Query: 69 DR-VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
VI ALN + +FIRGR+G LR ++Y+PE+RFR DTS +Y K++ L+ P++
Sbjct: 69 HSIVIEALNRHARFIRGRLGPQLRQMKYMPEVRFRDDTSFDNYKKIDELLRSPEV 123
>gi|163757751|ref|ZP_02164840.1| ribosome-binding factor A [Hoeflea phototrophica DFL-43]
gi|162285253|gb|EDQ35535.1| ribosome-binding factor A [Hoeflea phototrophica DFL-43]
Length = 148
Score = 108 bits (270), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/115 (48%), Positives = 82/115 (71%), Gaps = 2/115 (1%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
S+R LRVGE+VR+A+ V+ + +D ++S +IS++EV MS DL+VAT Y++ PL V
Sbjct: 10 SQRMLRVGEQVRAAITQVLQRGDIRDPILSNTLISVTEVRMSPDLQVATAYVT-PLGVED 68
Query: 69 DR-VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
I+ALN N +FIRGRI LR +R +PELRFR DTS ++Y K++AL+ P++
Sbjct: 69 HAATIAALNKNARFIRGRISPDLRQMRNIPELRFRDDTSFENYSKIDALLRSPEV 123
>gi|114706047|ref|ZP_01438950.1| ribosome-binding factor A [Fulvimarina pelagi HTCC2506]
gi|114538893|gb|EAU42014.1| ribosome-binding factor A [Fulvimarina pelagi HTCC2506]
Length = 140
Score = 106 bits (265), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 54/120 (45%), Positives = 82/120 (68%), Gaps = 4/120 (3%)
Query: 5 NPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-- 62
N S+R L VGE+VR AL V+ E +D L+ R V+S+SEV MS DL++AT Y+++
Sbjct: 7 NAGPSQRQLSVGEKVRHALTEVMQRGEIRDPLLERAVVSVSEVRMSPDLKIATAYVTVLG 66
Query: 63 PLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
D+ P I ALN + KFIRGR+ SL+ ++Y+PE+RFR DTS ++ +++AL+ P++
Sbjct: 67 QEDMQP--FIKALNDHAKFIRGRVTPSLKQMKYMPEIRFREDTSFDNFARIDALLKSPEV 124
>gi|319406544|emb|CBI80186.1| Ribosome-binding factor A [Bartonella sp. 1-1C]
Length = 137
Score = 104 bits (260), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 55/127 (43%), Positives = 80/127 (62%), Gaps = 3/127 (2%)
Query: 4 KNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL- 62
KNP S+R LRVGE+VR A+ ++ D + VIS+SEV MS DL++AT ++S
Sbjct: 2 KNPHPSQRQLRVGEQVRHAIAHILQRGILLDDIFKNIVISVSEVRMSSDLKIATCFVSFL 61
Query: 63 -PLD-VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
+D S D +ISALN N +FIRG I LR ++Y+P LRFR+D S ++ K++ L+ P
Sbjct: 62 NTVDQTSHDAIISALNKNSRFIRGAISHQLRQMKYMPALRFRFDNSFDNFAKIDTLLRSP 121
Query: 121 KIPVALE 127
++ L
Sbjct: 122 EVARDLH 128
>gi|260461979|ref|ZP_05810224.1| ribosome-binding factor A [Mesorhizobium opportunistum WSM2075]
gi|259032226|gb|EEW33492.1| ribosome-binding factor A [Mesorhizobium opportunistum WSM2075]
Length = 156
Score = 104 bits (259), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 52/115 (45%), Positives = 77/115 (66%), Gaps = 2/115 (1%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV-S 67
S+R LRVGE+VR AL + + D LI V+S+SEV MS DL++AT ++S PL
Sbjct: 10 SQRMLRVGEQVRHALSETLQRGDIIDPLIENSVVSVSEVRMSPDLKIATAFVS-PLGAKD 68
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
+ VI ALN + KF+RGR+ +LR ++Y+PE RFR DTS ++ ++N L+ P++
Sbjct: 69 AEAVIEALNKHAKFVRGRVSGALRQMKYMPEFRFRLDTSFDNFARINDLLKSPEV 123
>gi|306842725|ref|ZP_07475368.1| ribosome-binding factor A [Brucella sp. BO2]
gi|306287171|gb|EFM58673.1| ribosome-binding factor A [Brucella sp. BO2]
Length = 131
Score = 103 bits (257), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 51/108 (47%), Positives = 72/108 (66%)
Query: 15 VGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISA 74
+GE+VR AL V+ E +D LI R VIS+SEV MS DL++AT +I+ P VI A
Sbjct: 1 MGEQVRHALAQVLQRGEIRDDLIERTVISVSEVRMSPDLKIATCFITPLGSADPQAVIKA 60
Query: 75 LNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
L + KFIRGR+ SL ++Y+PE RFR DTS ++ K++AL+ P++
Sbjct: 61 LASHAKFIRGRVAPSLAQMKYMPEFRFRPDTSFDNFSKIDALLRSPEV 108
>gi|319408010|emb|CBI81664.1| Ribosome-binding factor A [Bartonella schoenbuchensis R1]
Length = 135
Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/126 (43%), Positives = 82/126 (65%), Gaps = 7/126 (5%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
MKN P S+R LRVGE+VR L ++ + D ++ VISISEV MS DL++AT ++
Sbjct: 1 MKNTGP--SQRQLRVGEQVRHVLAHILQRDILLDDVLKGVVISISEVRMSADLKIATCFV 58
Query: 61 SLPL----DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNAL 116
S PL D+S +I LN + +FIR I LR ++Y+PELRFR+D+S ++ K++AL
Sbjct: 59 S-PLSTIHDISHTAIIEVLNKHSRFIRKEISHQLRQMKYMPELRFRFDSSFDNFSKIDAL 117
Query: 117 MCLPKI 122
+ P++
Sbjct: 118 LHSPEV 123
>gi|13474630|ref|NP_106199.1| ribosome-binding factor A [Mesorhizobium loti MAFF303099]
gi|20978641|sp|Q98BI7|RBFA_RHILO RecName: Full=Ribosome-binding factor A
gi|14025384|dbj|BAB51985.1| ribosome-binding factor A [Mesorhizobium loti MAFF303099]
Length = 146
Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/115 (45%), Positives = 76/115 (66%), Gaps = 2/115 (1%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV-S 67
S+R LRV E+VR AL + E D LI V+S+SEV MS DLRVAT ++S PL
Sbjct: 10 SQRMLRVAEQVRHALSETLQRGEIIDPLIENTVVSVSEVRMSPDLRVATAFVS-PLGAKD 68
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
D V+ ALN + KF+RGR+ +LR ++++PE RF+ DTS ++ ++N L+ P++
Sbjct: 69 TDAVVEALNKHAKFVRGRVSGALRQMKFMPEFRFKLDTSFDNFARINDLLKSPEV 123
>gi|319779768|ref|YP_004139244.1| ribosome-binding factor A [Mesorhizobium ciceri biovar biserrulae
WSM1271]
gi|317165656|gb|ADV09194.1| ribosome-binding factor A [Mesorhizobium ciceri biovar biserrulae
WSM1271]
Length = 146
Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/115 (44%), Positives = 76/115 (66%), Gaps = 2/115 (1%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV-S 67
S+R LRV E+VR AL + E D LI V+S+SEV MS DL+VAT ++S PL
Sbjct: 10 SQRMLRVAEQVRHALSETLQRGEIIDPLIENTVVSVSEVRMSPDLKVATAFVS-PLGAKD 68
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
D V+ ALN + KF+RGR+ +LR ++++PE RF+ DTS ++ ++N L+ P++
Sbjct: 69 TDAVVEALNKHAKFVRGRVSGALRQMKFMPEFRFKLDTSFDNFARINDLLKSPEV 123
>gi|319405098|emb|CBI78702.1| Ribosome-binding factor A [Bartonella sp. AR 15-3]
Length = 138
Score = 101 bits (252), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 53/123 (43%), Positives = 79/123 (64%), Gaps = 3/123 (2%)
Query: 4 KNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL- 62
KN +S+R LRVGE+VR A+ ++ D VIS+SEV MS DL+VAT ++S
Sbjct: 3 KNISSSQRQLRVGEQVRHAIAHILQRGILLDDTFKNIVISVSEVRMSSDLKVATCFVSFL 62
Query: 63 -PLD-VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
+D S D +++ALN N +FIRG I LR ++Y+P LRFR+D S ++ K++AL+ P
Sbjct: 63 NTVDKASHDTIVNALNKNSRFIRGAISHQLRQMKYMPTLRFRFDNSFDNFAKIDALLRSP 122
Query: 121 KIP 123
++
Sbjct: 123 EVA 125
>gi|319403628|emb|CBI77213.1| Ribosome-binding factor A [Bartonella rochalimae ATCC BAA-1498]
Length = 138
Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/127 (41%), Positives = 78/127 (61%), Gaps = 3/127 (2%)
Query: 4 KNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL- 62
KN S+R LRVGE+VR A+ ++ D VIS+SEV MS DL++AT ++S
Sbjct: 3 KNIHPSQRQLRVGEQVRHAIAHILQRGVLLDDTFKNIVISVSEVRMSSDLKIATCFVSFL 62
Query: 63 -PLD-VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
+D S D ++SALN N +FIRG I LR ++Y+P LRFR+D S ++ K++ L+ P
Sbjct: 63 NTVDQTSHDAIVSALNKNSRFIRGAISHQLRQMKYMPALRFRFDNSFDNFAKIDTLLRSP 122
Query: 121 KIPVALE 127
++ L
Sbjct: 123 EVARDLH 129
>gi|110636255|ref|YP_676463.1| ribosome-binding factor A [Mesorhizobium sp. BNC1]
gi|123057284|sp|Q11BC7|RBFA_MESSB RecName: Full=Ribosome-binding factor A
gi|110287239|gb|ABG65298.1| ribosome-binding factor A [Chelativorans sp. BNC1]
Length = 133
Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 79/114 (69%), Gaps = 1/114 (0%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
S+R LRVGE+ R AL V+ + +D + VIS+SEV MS DL++ATV++S PL
Sbjct: 7 SQRQLRVGEQARHALSDVLQREDMRDPALEGAVISVSEVRMSPDLKIATVFVS-PLSGDK 65
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
+ +I+ALN + ++IRGR+ +LR ++Y+PE RF DTS +++ K++ ++ P++
Sbjct: 66 EAIIAALNRHARYIRGRVSPALRQMKYMPEFRFHLDTSYENFEKIDRILRSPEV 119
>gi|218515711|ref|ZP_03512551.1| ribosome-binding factor A [Rhizobium etli 8C-3]
Length = 116
Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/106 (49%), Positives = 74/106 (69%), Gaps = 2/106 (1%)
Query: 18 EVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR-VISALN 76
+VR+A+ V+ E +D +I VISISEV MS DL++AT Y++ PL VS VI ALN
Sbjct: 1 QVRAAITQVLQRGEVRDDIIEATVISISEVRMSPDLKIATAYVT-PLGVSDHSIVIEALN 59
Query: 77 CNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
+ KFIRGR+G LR ++Y+PE+RFR DTS +Y K++ L+ P++
Sbjct: 60 RHAKFIRGRLGPQLRQMKYMPEVRFRDDTSFDNYKKIDELLRSPEV 105
>gi|240849880|ref|YP_002971268.1| ribosomal-binding factor A [Bartonella grahamii as4aup]
gi|240267003|gb|ACS50591.1| ribosomal-binding factor A [Bartonella grahamii as4aup]
Length = 135
Score = 98.2 bits (243), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 52/123 (42%), Positives = 81/123 (65%), Gaps = 5/123 (4%)
Query: 4 KNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP 63
KN K S+R LRV E+VR A+ ++ + D ++ VIS+SEV MS DL++AT ++S P
Sbjct: 2 KNAKPSQRQLRVAEQVRHAIAHILQRDILLDDILKDIVISVSEVRMSPDLKIATCFVS-P 60
Query: 64 L----DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
L +VS V+ LN + +F+RG I +LR ++Y+PELRFR D S ++ K++AL+
Sbjct: 61 LSTLKNVSHTDVVDTLNKHSRFLRGEISHALRQMKYMPELRFRLDNSFDNFSKIDALLRS 120
Query: 120 PKI 122
P++
Sbjct: 121 PEV 123
>gi|49473869|ref|YP_031911.1| ribosome-binding factor A [Bartonella quintana str. Toulouse]
gi|61215005|sp|Q6G0P3|RBFA_BARQU RecName: Full=Ribosome-binding factor A
gi|49239372|emb|CAF25705.1| Ribosomal-binding factor A [Bartonella quintana str. Toulouse]
Length = 135
Score = 98.2 bits (243), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 54/125 (43%), Positives = 82/125 (65%), Gaps = 5/125 (4%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
MKN P S+R LRVGE+VR A+ + + D L+ VIS++EV MS DL++AT ++
Sbjct: 1 MKNAGP--SQRQLRVGEQVRHAVAYKLQQGILLDDLLKNIVISVAEVRMSPDLKIATCFV 58
Query: 61 S---LPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
S +VSP V++ LN + +FIR I SLR ++Y+PELRFR DTS ++ K+++L+
Sbjct: 59 SSLSTLHNVSPTDVVNVLNKHSRFIRREISYSLRQMKYMPELRFRLDTSFDNFSKIDSLL 118
Query: 118 CLPKI 122
P++
Sbjct: 119 RSPEV 123
>gi|90420530|ref|ZP_01228437.1| ribosome-binding factor A [Aurantimonas manganoxydans SI85-9A1]
gi|90335258|gb|EAS49011.1| ribosome-binding factor A [Aurantimonas manganoxydans SI85-9A1]
Length = 137
Score = 97.8 bits (242), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 76/114 (66%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
S+R L VGE+VR AL V+ E D ++ + ++ ++EV MS DL++AT Y+++
Sbjct: 10 SQRQLSVGEKVRHALTEVMQRGEINDPMLEKALVLVTEVRMSSDLKLATAYVTILGQTET 69
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
+ ALN N +FIRGR+ +LR ++Y+PE+RFR DTS ++ +++AL+ P++
Sbjct: 70 KPFVDALNRNARFIRGRLTPALRQMKYMPEVRFRTDTSFDNFARIDALLKSPEV 123
>gi|49475026|ref|YP_033067.1| ribosome-binding factor A [Bartonella henselae str. Houston-1]
gi|61215011|sp|Q6G4W8|RBFA_BARHE RecName: Full=Ribosome-binding factor A
gi|49237831|emb|CAF27026.1| Ribosomal-binding factor A [Bartonella henselae str. Houston-1]
Length = 135
Score = 97.4 bits (241), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 55/126 (43%), Positives = 81/126 (64%), Gaps = 7/126 (5%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
MKN P S+R LRVGE+VR A+ ++ D L+ VIS+ EV MS DL++A ++
Sbjct: 1 MKNAEP--SQRQLRVGEQVRHAVAHILQQGILLDNLLKNMVISVVEVRMSPDLKIAICFV 58
Query: 61 SLPL----DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNAL 116
S PL + S V++ALN + +FIRG I SLR ++Y+PELRFR D S ++ K++AL
Sbjct: 59 S-PLSTVHNASRADVVNALNKHSRFIRGEISHSLRQMKYMPELRFRLDNSFDNFSKIDAL 117
Query: 117 MCLPKI 122
+ P++
Sbjct: 118 LRSPEV 123
>gi|319898336|ref|YP_004158429.1| Ribosome-binding factor A [Bartonella clarridgeiae 73]
gi|319402300|emb|CBI75839.1| Ribosome-binding factor A [Bartonella clarridgeiae 73]
Length = 136
Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/129 (39%), Positives = 82/129 (63%), Gaps = 5/129 (3%)
Query: 4 KNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP 63
KN S+R LR+GE+VR A+ ++ + D + +IS+SEV MS DL++AT ++S P
Sbjct: 3 KNIGPSQRQLRIGEQVRHAVAHILQRDVLLDDALRNIIISVSEVRMSSDLKIATCFVS-P 61
Query: 64 LDV----SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
L+ S + +ISALN + +FIRG + LR ++Y+P LRFR+D S ++ K++AL+
Sbjct: 62 LNTVDKTSHNAIISALNKHSRFIRGAVSHQLRQMKYMPILRFRFDNSFDNFAKIDALLRS 121
Query: 120 PKIPVALEK 128
P++ L
Sbjct: 122 PEVARDLHH 130
>gi|121601742|ref|YP_989504.1| ribosome-binding factor A [Bartonella bacilliformis KC583]
gi|120613919|gb|ABM44520.1| ribosome-binding factor A [Bartonella bacilliformis KC583]
Length = 148
Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 77/122 (63%), Gaps = 3/122 (2%)
Query: 4 KNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL- 62
K+ S+R LRVGE+VR AL ++ D + V S+SEV MS DL++AT ++S
Sbjct: 16 KHADLSQRQLRVGEQVRHALAHMLQRGILLDDALKDVVFSVSEVRMSPDLKIATCFVSFL 75
Query: 63 --PLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
D+S +I LN + +FIRG I SLR ++Y+PELRFR D S ++ K++AL+ LP
Sbjct: 76 NTVDDISRATLIKVLNKHSRFIRGEISSSLRQMKYMPELRFRLDNSFDNFSKIDALLRLP 135
Query: 121 KI 122
++
Sbjct: 136 EV 137
>gi|171769483|sp|A1UU51|RBFA_BARBK RecName: Full=Ribosome-binding factor A
Length = 134
Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 77/122 (63%), Gaps = 3/122 (2%)
Query: 4 KNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL- 62
K+ S+R LRVGE+VR AL ++ D + V S+SEV MS DL++AT ++S
Sbjct: 2 KHADLSQRQLRVGEQVRHALAHMLQRGILLDDALKDVVFSVSEVRMSPDLKIATCFVSFL 61
Query: 63 --PLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
D+S +I LN + +FIRG I SLR ++Y+PELRFR D S ++ K++AL+ LP
Sbjct: 62 NTVDDISRATLIKVLNKHSRFIRGEISSSLRQMKYMPELRFRLDNSFDNFSKIDALLRLP 121
Query: 121 KI 122
++
Sbjct: 122 EV 123
>gi|163867510|ref|YP_001608709.1| ribosome-binding factor A [Bartonella tribocorum CIP 105476]
gi|189039527|sp|A9IMT2|RBFA_BART1 RecName: Full=Ribosome-binding factor A
gi|161017156|emb|CAK00714.1| Ribosome-binding factor A [Bartonella tribocorum CIP 105476]
Length = 135
Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/126 (40%), Positives = 81/126 (64%), Gaps = 7/126 (5%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
MKN P S+R LRV E+VR A+ ++ D ++ VIS+SEV +S DL++AT ++
Sbjct: 1 MKNAGP--SQRQLRVAEQVRHAVAHILQRGILLDDVLKDIVISVSEVRISPDLKIATCFV 58
Query: 61 SLPL----DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNAL 116
S PL + S V++ LN + +F+RG I +LR ++Y+PELRFR D S ++ K++AL
Sbjct: 59 S-PLSTLKNTSHTDVVNTLNKHSRFLRGEISHALRQMKYMPELRFRLDNSFDNFSKIDAL 117
Query: 117 MCLPKI 122
+ P++
Sbjct: 118 LRSPEV 123
>gi|304392770|ref|ZP_07374710.1| ribosome-binding factor A [Ahrensia sp. R2A130]
gi|303295400|gb|EFL89760.1| ribosome-binding factor A [Ahrensia sp. R2A130]
Length = 150
Score = 91.3 bits (225), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 49/116 (42%), Positives = 73/116 (62%), Gaps = 2/116 (1%)
Query: 2 KNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS 61
KNK P S+R LRVGE VR ALM V+ + D +++ +I+ISEV M+ DL++A Y+S
Sbjct: 3 KNKGP--SQRQLRVGELVRHALMDVLAREQLDDPVLASAMITISEVRMTADLKIANCYVS 60
Query: 62 LPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
L + V+ AL F+RGR G L +R +P RFR DTS +++ +++AL+
Sbjct: 61 LLGGGDMEAVLKALGRAEGFLRGRSGPHLSQMRSMPTFRFREDTSFENFARIDALL 116
>gi|154244249|ref|YP_001415207.1| ribosome-binding factor A [Xanthobacter autotrophicus Py2]
gi|238686704|sp|A7IC07|RBFA_XANP2 RecName: Full=Ribosome-binding factor A
gi|154158334|gb|ABS65550.1| ribosome-binding factor A [Xanthobacter autotrophicus Py2]
Length = 151
Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 75/117 (64%), Gaps = 7/117 (5%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL---D 65
S+R LRVGE VR AL V+ D +++ +I++ EV MS DL++AT Y+ +PL D
Sbjct: 12 SQRMLRVGELVRHALADVLQRGSVTDPVLAAHIITVPEVRMSPDLKIATCYV-MPLGGKD 70
Query: 66 VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
++P VI AL N +++R +GR + L+ VPELRFR DTS +++AL+ PK+
Sbjct: 71 ITP--VIKALAANARYLRLEVGRRM-ELKSVPELRFREDTSFDEGARMDALLRSPKV 124
>gi|298293851|ref|YP_003695790.1| ribosome-binding factor A [Starkeya novella DSM 506]
gi|296930362|gb|ADH91171.1| ribosome-binding factor A [Starkeya novella DSM 506]
Length = 141
Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/132 (40%), Positives = 80/132 (60%), Gaps = 6/132 (4%)
Query: 1 MKNKNPKNS---RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVAT 57
MKN+ S +R LRVGE VR AL ++ + D +S+ +I++ EV MS DL++AT
Sbjct: 1 MKNRASSGSGPSQRQLRVGELVRHALAEILARGDLPDPALSKVMITVPEVRMSPDLKIAT 60
Query: 58 VYISLPLDVSPDR-VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNAL 116
Y+ +PL + I AL N K +RG I R + L++VPELRFR DTS + +++AL
Sbjct: 61 CYV-MPLGGKDHKAAIDALATNAKPLRGEIARRV-ELKFVPELRFRIDTSFEEGDRIDAL 118
Query: 117 MCLPKIPVALEK 128
+ P++ L+K
Sbjct: 119 LRSPQVQRDLDK 130
>gi|115522224|ref|YP_779135.1| ribosome-binding factor A [Rhodopseudomonas palustris BisA53]
gi|122298068|sp|Q07V79|RBFA_RHOP5 RecName: Full=Ribosome-binding factor A
gi|115516171|gb|ABJ04155.1| ribosome-binding factor A [Rhodopseudomonas palustris BisA53]
Length = 138
Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 72/123 (58%), Gaps = 3/123 (2%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
KN + S+R LRVGE VR A+ ++ D ++ ++++ EV MS DL++AT+Y+
Sbjct: 6 QKNSGREASQRQLRVGESVRHAIAEILAQGGVHDPVLEGHLVTVPEVRMSPDLKLATIYV 65
Query: 61 SLPLDV-SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+PL + V+ AL+ N KF+RG + R + NL++ PELRFR D ++ L+
Sbjct: 66 -MPLGGRDTELVLKALDHNKKFLRGEVSRRV-NLKFAPELRFRADDRFDEAERIEKLLRT 123
Query: 120 PKI 122
P +
Sbjct: 124 PAV 126
>gi|85714174|ref|ZP_01045163.1| ribosome-binding factor A [Nitrobacter sp. Nb-311A]
gi|85699300|gb|EAQ37168.1| ribosome-binding factor A [Nitrobacter sp. Nb-311A]
Length = 137
Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 72/122 (59%), Gaps = 7/122 (5%)
Query: 4 KNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP 63
K+P S R LRV E VR A+ ++ + D ++ ++++ EV MS DL++AT+Y+ +P
Sbjct: 9 KHPGGSHRQLRVAESVRHAIADILAQGQVHDPVLEGRLVTVPEVRMSADLKLATIYV-MP 67
Query: 64 L---DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
L D + VI AL+ N KF+RG I R + NL++ P++RFR D ++ L+ P
Sbjct: 68 LGGRDTA--EVIDALDHNRKFLRGEIARRV-NLKFAPDIRFRVDERFDEAERIEKLLRTP 124
Query: 121 KI 122
+
Sbjct: 125 AV 126
>gi|300024999|ref|YP_003757610.1| ribosome-binding factor A [Hyphomicrobium denitrificans ATCC 51888]
gi|299526820|gb|ADJ25289.1| ribosome-binding factor A [Hyphomicrobium denitrificans ATCC 51888]
Length = 132
Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 73/117 (62%), Gaps = 7/117 (5%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL---D 65
S+R LRVGE +R + ++ E D +++ VI+I EV +S DL++ATVY+ +PL D
Sbjct: 14 SQRMLRVGELIRHKIAEMLSRGEIHDDVLASHVITIPEVRLSPDLKLATVYV-MPLGGND 72
Query: 66 VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
V P VI AL N K+IR + +L NLRY P+LRFR D + + +++ L+ K+
Sbjct: 73 VKP--VIEALTRNKKYIRAEVAHTL-NLRYAPDLRFREDETFEEATRIDRLLDSEKV 126
>gi|172046706|sp|Q3SWP8|RBFA_NITWN RecName: Full=Ribosome-binding factor A
Length = 137
Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 72/123 (58%), Gaps = 7/123 (5%)
Query: 3 NKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL 62
K+P S R LRV E VR A+ ++ + D ++ ++++ EV MS DL++AT+Y+ +
Sbjct: 8 EKHPGGSHRQLRVAETVRHAIADILAQGQVHDPVLEGHLVTVPEVRMSADLKLATIYV-M 66
Query: 63 PL---DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
PL D + VI AL+ N KF+RG I R + NL++ P++RFR D ++ L+
Sbjct: 67 PLGGRDTA--DVIDALDRNRKFLRGEIARRV-NLKFAPDIRFRVDERFDEAERIEKLLRT 123
Query: 120 PKI 122
P +
Sbjct: 124 PAV 126
>gi|75674224|ref|YP_316645.1| ribosome-binding factor A [Nitrobacter winogradskyi Nb-255]
gi|74419094|gb|ABA03293.1| ribosome-binding factor A [Nitrobacter winogradskyi Nb-255]
Length = 146
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 72/123 (58%), Gaps = 7/123 (5%)
Query: 3 NKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL 62
K+P S R LRV E VR A+ ++ + D ++ ++++ EV MS DL++AT+Y+ +
Sbjct: 17 EKHPGGSHRQLRVAETVRHAIADILAQGQVHDPVLEGHLVTVPEVRMSADLKLATIYV-M 75
Query: 63 PL---DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
PL D + VI AL+ N KF+RG I R + NL++ P++RFR D ++ L+
Sbjct: 76 PLGGRDTAD--VIDALDRNRKFLRGEIARRV-NLKFAPDIRFRVDERFDEAERIEKLLRT 132
Query: 120 PKI 122
P +
Sbjct: 133 PAV 135
>gi|27375893|ref|NP_767422.1| ribosome-binding factor A [Bradyrhizobium japonicum USDA 110]
gi|32171617|sp|Q89WB0|RBFA_BRAJA RecName: Full=Ribosome-binding factor A
gi|27349031|dbj|BAC46047.1| ribosome-binding factor A [Bradyrhizobium japonicum USDA 110]
Length = 144
Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 72/122 (59%), Gaps = 3/122 (2%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV- 66
S+R LRVGE+VR A+ ++ D + ++++ EV MS DL++AT+Y+ +PL
Sbjct: 15 GSQRQLRVGEQVRHAMAEILAQGNVHDADLEGHIVTVPEVRMSPDLKLATIYV-MPLGGR 73
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVAL 126
+ VI+AL N KF+RG + R + NL++ P++RFR D ++ L+ P + L
Sbjct: 74 DTEIVIAALERNKKFLRGEVARRV-NLKFAPDVRFRVDERFDEAERIEKLLRTPAVQKDL 132
Query: 127 EK 128
E+
Sbjct: 133 EQ 134
>gi|197106896|ref|YP_002132273.1| ribosome-binding factor A [Phenylobacterium zucineum HLK1]
gi|238690151|sp|B4RC51|RBFA_PHEZH RecName: Full=Ribosome-binding factor A
gi|196480316|gb|ACG79844.1| ribosome-binding factor A [Phenylobacterium zucineum HLK1]
Length = 145
Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
S+R LR GE VR AL+ + E D +++ ++++EV +S DLR ATV++
Sbjct: 16 SQRQLRAGELVRHALVEIFREEEINDPVLAGVSVTVTEVRVSPDLRHATVFVEPLGGEHA 75
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
D V+ ALN + +F+RG +GR++ LR+ PEL+F +D S ++ L PK+
Sbjct: 76 DEVVQALNRHARFLRGHLGRAI-ELRFTPELKFLHDESFNEAARMAKLFDDPKV 128
>gi|254295407|ref|YP_003061430.1| ribosome-binding factor A [Hirschia baltica ATCC 49814]
gi|254043938|gb|ACT60733.1| ribosome-binding factor A [Hirschia baltica ATCC 49814]
Length = 143
Score = 81.3 bits (199), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 74/122 (60%), Gaps = 7/122 (5%)
Query: 4 KNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP 63
K P S+R LR GE VR AL+ ++L +F D ++ I++SEV MS DL+ AT Y++ P
Sbjct: 10 KGP--SQRQLRAGELVRHALVDILLREQFNDPALADVSITVSEVRMSPDLQHATCYVA-P 66
Query: 64 L---DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
L + + + ++ LN F+RGR+GR + ++RY P+LRF D S K+ L+ P
Sbjct: 67 LGGDESAQESIVHGLNRAKGFLRGRLGREI-DMRYTPQLRFLSDDSYTEAGKIGDLLASP 125
Query: 121 KI 122
++
Sbjct: 126 EV 127
>gi|241761096|ref|ZP_04759185.1| ribosome-binding factor A [Zymomonas mobilis subsp. mobilis ATCC
10988]
gi|260752938|ref|YP_003225831.1| ribosome-binding factor A [Zymomonas mobilis subsp. mobilis NCIMB
11163]
gi|241374715|gb|EER64176.1| ribosome-binding factor A [Zymomonas mobilis subsp. mobilis ATCC
10988]
gi|258552301|gb|ACV75247.1| ribosome-binding factor A [Zymomonas mobilis subsp. mobilis NCIMB
11163]
Length = 141
Score = 81.3 bits (199), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 76/128 (59%), Gaps = 2/128 (1%)
Query: 2 KNKNPK-NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
+N+ P+ +S R LRVGE++R L +++ E + +SISEV M+ DLR+ATV++
Sbjct: 3 RNQTPEGHSIRPLRVGEQIRHVLAEMLMRGEIHGDTLDNLFVSISEVRMTPDLRIATVFV 62
Query: 61 SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
S D VI L+ N F++ I + +R L+YVP+LRF D S + ++++L+ P
Sbjct: 63 KSLGGASDDTVIGVLSKNASFLQAAIAKKIR-LKYVPKLRFLADESFEQGSRIDSLLRSP 121
Query: 121 KIPVALEK 128
+ L++
Sbjct: 122 HVQRDLQE 129
>gi|39933512|ref|NP_945788.1| ribosome-binding factor A [Rhodopseudomonas palustris CGA009]
gi|192288870|ref|YP_001989475.1| ribosome-binding factor A [Rhodopseudomonas palustris TIE-1]
gi|61215050|sp|Q6NCN6|RBFA_RHOPA RecName: Full=Ribosome-binding factor A
gi|229568643|sp|B3QAB3|RBFA_RHOPT RecName: Full=Ribosome-binding factor A
gi|39647358|emb|CAE25879.1| putative ribosome-binding factor A [Rhodopseudomonas palustris
CGA009]
gi|192282619|gb|ACE98999.1| ribosome-binding factor A [Rhodopseudomonas palustris TIE-1]
Length = 137
Score = 81.3 bits (199), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 74/128 (57%), Gaps = 3/128 (2%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
K+ P S R+LRVGE +R A+ ++ D ++ ++++ EV MS DL++AT+Y+
Sbjct: 6 QKSSPPGGSTRSLRVGELIRHAVAEILAQGGVHDPVLESHLVTVPEVRMSPDLKLATIYV 65
Query: 61 SLPLDVSPDR-VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+PL ++ VI AL + +F+RG I + NL++ PELRFR D +++ L+
Sbjct: 66 -MPLGGRDEKLVIDALEHHKRFLRGEIAHRV-NLKFAPELRFRIDERFAEAERIDKLLRS 123
Query: 120 PKIPVALE 127
P + LE
Sbjct: 124 PAVQKDLE 131
>gi|56551449|ref|YP_162288.1| ribosome-binding factor A [Zymomonas mobilis subsp. mobilis ZM4]
gi|61214722|sp|Q5NQ28|RBFA_ZYMMO RecName: Full=Ribosome-binding factor A
gi|56543023|gb|AAV89177.1| ribosome-binding factor A [Zymomonas mobilis subsp. mobilis ZM4]
Length = 141
Score = 80.9 bits (198), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 76/128 (59%), Gaps = 2/128 (1%)
Query: 2 KNKNPK-NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
+N+ P+ +S R LRVGE++R L +++ E + +SISEV M+ DLR+ATV++
Sbjct: 3 RNQTPEGHSIRPLRVGEQIRHVLAEMLMRGEIHGDTLDNLFVSISEVRMTPDLRIATVFV 62
Query: 61 SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
S D VI L+ N F++ I + +R L+YVP+LRF D S + ++++L+ P
Sbjct: 63 KSLGGASDDTVIGILSKNASFLQAAIAKKIR-LKYVPKLRFLADESFEQGSRIDSLLRSP 121
Query: 121 KIPVALEK 128
+ L++
Sbjct: 122 HVQRDLQE 129
>gi|299133372|ref|ZP_07026567.1| ribosome-binding factor A [Afipia sp. 1NLS2]
gi|298593509|gb|EFI53709.1| ribosome-binding factor A [Afipia sp. 1NLS2]
Length = 140
Score = 80.9 bits (198), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 68/116 (58%), Gaps = 3/116 (2%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV- 66
S+R LRVGE +R A+ ++ D +S +I++ EV MS DL++ATVY+ +PL
Sbjct: 16 GSQRQLRVGELIRHAISDILSQGGVHDDTLSGHIITVPEVRMSPDLKLATVYV-MPLGGH 74
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
D VI+AL N KF+RG + + NL++ P+LRFR D ++ L+ P +
Sbjct: 75 DTDAVIAALAHNKKFLRGEVAHRV-NLKFAPDLRFRADERFDEAERIEKLLRTPAV 129
>gi|302381333|ref|YP_003817156.1| ribosome-binding factor A [Brevundimonas subvibrioides ATCC 15264]
gi|302191961|gb|ADK99532.1| ribosome-binding factor A [Brevundimonas subvibrioides ATCC 15264]
Length = 147
Score = 80.5 bits (197), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 78/136 (57%), Gaps = 16/136 (11%)
Query: 1 MKNKNPKN-----SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRV 55
M NK K+ S+R LR E +R AL+ V+ NE +D + ++++EV +S DL+
Sbjct: 1 MANKKSKSTAGLVSQRQLRASEMIRHALVEVMRENEIRDPALIGVSVTVTEVRLSPDLKH 60
Query: 56 ATVYISLPLDVS---------PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTS 106
AT ++ PL D ++ ALN + KF+RG +GR + ++R+ P+LRFR+D S
Sbjct: 61 ATCFVE-PLGAGIETSDTAGHIDEIVKALNTHAKFLRGALGRHI-DMRFTPDLRFRHDES 118
Query: 107 LQSYWKLNALMCLPKI 122
+ +LN L+ P++
Sbjct: 119 FAAAERLNRLLDDPRV 134
>gi|91974712|ref|YP_567371.1| ribosome-binding factor A [Rhodopseudomonas palustris BisB5]
gi|123061509|sp|Q13EL9|RBFA_RHOPS RecName: Full=Ribosome-binding factor A
gi|91681168|gb|ABE37470.1| ribosome-binding factor A [Rhodopseudomonas palustris BisB5]
Length = 136
Score = 80.1 bits (196), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 72/128 (56%), Gaps = 3/128 (2%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
K S R LRVGE VR A+ ++ D ++ +I++ EV MS DL++ATVY+
Sbjct: 5 QKPTGQSESPRKLRVGELVRHAVAEILAQGGVHDPVLETHLITVPEVRMSPDLKLATVYV 64
Query: 61 SLPLDVSPDR-VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+PL ++ VI+AL + +F+RG + R + NL+Y PE+RFR D ++ L+
Sbjct: 65 -MPLGGRDEKLVIAALEQHKRFLRGEVARRV-NLKYAPEIRFRIDERFAEAERIEKLLRT 122
Query: 120 PKIPVALE 127
P + LE
Sbjct: 123 PAVQKDLE 130
>gi|323136841|ref|ZP_08071922.1| ribosome-binding factor A [Methylocystis sp. ATCC 49242]
gi|322398158|gb|EFY00679.1| ribosome-binding factor A [Methylocystis sp. ATCC 49242]
Length = 142
Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 71/110 (64%), Gaps = 3/110 (2%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
S+R LRV E VR A ++ E D ++ + V+++S V MS DL++AT+Y+ +PL
Sbjct: 13 SQRMLRVAELVRHAFAQLLSRGEISDPVLEKHVVTVSRVKMSPDLKLATIYV-MPLGGKD 71
Query: 69 D-RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ VISAL+ + +F+RG I + NL++ PE+RFR D S + +++A++
Sbjct: 72 EPEVISALDRHKRFLRGEIAHEV-NLKFAPEIRFRIDDSFDAVSRIDAIL 120
>gi|254420363|ref|ZP_05034087.1| ribosome-binding factor A [Brevundimonas sp. BAL3]
gi|196186540|gb|EDX81516.1| ribosome-binding factor A [Brevundimonas sp. BAL3]
Length = 151
Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 74/129 (57%), Gaps = 11/129 (8%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS- 67
S+R LR GE +R AL+ ++ + D ++ ++++EV +S DL+ AT ++ PL
Sbjct: 17 SQRQLRAGELIRHALVDILREEDIHDEALADVSVTVTEVRLSPDLKHATCFVE-PLGAGV 75
Query: 68 --------PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+I ALN + KF+RG++GR L ++++ P+LRFR+D S + L+ L
Sbjct: 76 EAAATTGHESEIIKALNVHAKFLRGQLGRRL-DMKFTPDLRFRHDESFDAASHLDRLFED 134
Query: 120 PKIPVALEK 128
P++ LE+
Sbjct: 135 PRVRADLER 143
>gi|92115665|ref|YP_575394.1| ribosome-binding factor A [Nitrobacter hamburgensis X14]
gi|122418983|sp|Q1QS63|RBFA_NITHX RecName: Full=Ribosome-binding factor A
gi|91798559|gb|ABE60934.1| ribosome-binding factor A [Nitrobacter hamburgensis X14]
Length = 137
Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 71/124 (57%), Gaps = 7/124 (5%)
Query: 2 KNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS 61
K+ S+R LRV E VR A+ ++ D ++ +I++ EV MS DL++AT+Y+
Sbjct: 7 KDSTSGASQRQLRVAETVRHAIADILAQGHVHDPVLEGHLITVPEVRMSADLKLATIYV- 65
Query: 62 LPL---DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+PL D + VI AL+ N KF+RG I R + NL++ P++RFR D ++ L+
Sbjct: 66 MPLGGRDTTD--VIDALDHNRKFLRGEIARRV-NLKFAPDIRFRADERFDEAERIEKLLR 122
Query: 119 LPKI 122
P +
Sbjct: 123 TPAV 126
>gi|90422005|ref|YP_530375.1| ribosome-binding factor A [Rhodopseudomonas palustris BisB18]
gi|122477505|sp|Q21C30|RBFA_RHOPB RecName: Full=Ribosome-binding factor A
gi|90104019|gb|ABD86056.1| ribosome-binding factor A [Rhodopseudomonas palustris BisB18]
Length = 137
Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 73/129 (56%), Gaps = 3/129 (2%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
K ++P S+R LRVGE VR A+ ++ D ++ +I++ EV MS DL++ATVY+
Sbjct: 6 QKAQSPGGSQRQLRVGEIVRHAVAELLSQGGVHDPVLEGHLITVPEVRMSPDLKLATVYV 65
Query: 61 SLPLDV-SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+PL D V+ AL N FIR + R + NL++ P+LRFR D ++ L+
Sbjct: 66 -MPLGGRDTDVVLKALAANKPFIRTAVARRV-NLKFAPDLRFRIDERFDEAERIEKLLRT 123
Query: 120 PKIPVALEK 128
P + L++
Sbjct: 124 PGVQKDLQQ 132
>gi|114571585|ref|YP_758265.1| ribosome-binding factor A [Maricaulis maris MCS10]
gi|122314885|sp|Q0AK66|RBFA_MARMM RecName: Full=Ribosome-binding factor A
gi|114342047|gb|ABI67327.1| ribosome-binding factor A [Maricaulis maris MCS10]
Length = 141
Score = 78.2 bits (191), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 71/121 (58%), Gaps = 5/121 (4%)
Query: 3 NKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL 62
+K P S+R LR GE VR AL+ +I EF+D + +IS++EV S DLRVA VY++
Sbjct: 9 SKGP--SQRQLRAGELVRHALVGIIAREEFRDPDLEGQMISVTEVRPSPDLRVAKVYVA- 65
Query: 63 PLDVSPD-RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
PL ++ + LN F+RGR+GR + +++ PEL F D S + ++ L+ P
Sbjct: 66 PLGRGDSAKLAAGLNRCAAFLRGRLGREI-EMKFTPELHFHADNSFDTASHVDDLLNRPT 124
Query: 122 I 122
+
Sbjct: 125 V 125
>gi|218507999|ref|ZP_03505877.1| ribosome-binding factor A [Rhizobium etli Brasil 5]
Length = 89
Score = 77.8 bits (190), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 44/80 (55%), Positives = 57/80 (71%), Gaps = 2/80 (2%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
S+R LRVGE+VR+A+ V+ E +D +I VISISEV MS DL++AT Y++ PL VS
Sbjct: 10 SQRMLRVGEQVRAAITQVLQRGEVRDDIIEATVISISEVRMSPDLKIATAYVT-PLGVSD 68
Query: 69 DR-VISALNCNIKFIRGRIG 87
VI ALN + KFIRGR+G
Sbjct: 69 HSIVIEALNRHAKFIRGRLG 88
>gi|86747727|ref|YP_484223.1| ribosome-binding factor A [Rhodopseudomonas palustris HaA2]
gi|123004688|sp|Q2J2J8|RBFA_RHOP2 RecName: Full=Ribosome-binding factor A
gi|86570755|gb|ABD05312.1| ribosome-binding factor A [Rhodopseudomonas palustris HaA2]
Length = 135
Score = 77.8 bits (190), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 70/122 (57%), Gaps = 3/122 (2%)
Query: 2 KNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS 61
K S R LRVGE VR A+ ++ D ++ +I++ EV MS DL++ATVY+
Sbjct: 6 KKTGQSASPRKLRVGELVRHAVAEILSQGGVHDPVLETHLITVPEVRMSPDLKLATVYV- 64
Query: 62 LPLDVSPDR-VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
+PL ++ V++AL + +F+RG + R + NL+Y P+LRFR D ++ L+ P
Sbjct: 65 MPLGGKDEKPVLAALEQHKRFLRGEVARRV-NLKYAPDLRFRIDERFAEAERIEKLLRTP 123
Query: 121 KI 122
+
Sbjct: 124 AV 125
>gi|148556716|ref|YP_001264298.1| ribosome-binding factor A [Sphingomonas wittichii RW1]
gi|166219409|sp|A5VCZ4|RBFA_SPHWW RecName: Full=Ribosome-binding factor A
gi|148501906|gb|ABQ70160.1| ribosome-binding factor A [Sphingomonas wittichii RW1]
Length = 132
Score = 77.8 bits (190), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 73/128 (57%), Gaps = 2/128 (1%)
Query: 2 KNKNPKN-SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
+N+ P+ S R LRVGE+VR AL +++ E D +++ ++S++EV MS DLR ATV++
Sbjct: 3 RNETPEGRSVRLLRVGEQVRHALSDILMRGEVHDDVLASHMVSVTEVRMSPDLRHATVFV 62
Query: 61 SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
L D VI AL N F++ + R + N +Y +L+F D S ++ L+ P
Sbjct: 63 KPLLGGDEDIVIKALRTNTAFLQSEVARRV-NTKYAAKLKFLADESFDEGSHIDRLLRDP 121
Query: 121 KIPVALEK 128
I L++
Sbjct: 122 SIARDLDQ 129
>gi|209883659|ref|YP_002287516.1| ribosome-binding factor A [Oligotropha carboxidovorans OM5]
gi|226723605|sp|B6JCS1|RBFA_OLICO RecName: Full=Ribosome-binding factor A
gi|209871855|gb|ACI91651.1| ribosome-binding factor A [Oligotropha carboxidovorans OM5]
Length = 141
Score = 77.0 bits (188), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 67/114 (58%), Gaps = 3/114 (2%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-DVSP 68
+R LRVGE +R A+ ++ D ++ +I++ EV MS DL++ATVY+ +PL
Sbjct: 18 QRQLRVGELIRHAMADILAQGGVHDDTLAGHIITVPEVRMSPDLKLATVYV-MPLGGHDT 76
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
+ V++AL N KF+RG + + NL++ PELRFR D ++ L+ P +
Sbjct: 77 EAVLAALAHNKKFLRGEVAHRV-NLKFAPELRFRVDERFDEAERIEKLLRTPAV 129
>gi|315497231|ref|YP_004086035.1| ribosome-binding factor a [Asticcacaulis excentricus CB 48]
gi|315415243|gb|ADU11884.1| ribosome-binding factor A [Asticcacaulis excentricus CB 48]
Length = 156
Score = 77.0 bits (188), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 72/124 (58%), Gaps = 12/124 (9%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD--- 65
S+R LR GE VR AL+ ++ E D + I+I+EV S DLR ATV++ PL
Sbjct: 19 SQRQLRAGELVRHALVEILREEELHDEALQGVSITITEVRCSPDLRHATVFVE-PLGAGL 77
Query: 66 ----VSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+S D++ I ALN + KF+RG +GR + ++++ P+LRF +D S +++AL
Sbjct: 78 GGVTISKDKIAPAIEALNRHAKFLRGILGRMI-DMKFTPDLRFLHDESFNEAARIDALFM 136
Query: 119 LPKI 122
P +
Sbjct: 137 RPDV 140
>gi|188582063|ref|YP_001925508.1| ribosome-binding factor A [Methylobacterium populi BJ001]
gi|259552026|sp|B1ZDQ7|RBFA_METPB RecName: Full=Ribosome-binding factor A
gi|179345561|gb|ACB80973.1| ribosome-binding factor A [Methylobacterium populi BJ001]
Length = 145
Score = 77.0 bits (188), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 72/122 (59%), Gaps = 7/122 (5%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL---D 65
S+R RV E VR AL V+ + QD ++ V+++ EV MS DL++AT Y+ +PL D
Sbjct: 11 SQRQQRVAELVRHALAEVLQRGDIQDPVLGSHVVTVPEVRMSPDLKLATAYV-MPLGGQD 69
Query: 66 VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
+P VI+AL + K +R + R + NL+Y PELRFR D + +++ L+ K+
Sbjct: 70 EAP--VIAALERHKKILRQEVARRV-NLKYAPELRFRRDETFDEAARIDQLLRSEKVQRD 126
Query: 126 LE 127
LE
Sbjct: 127 LE 128
>gi|307942747|ref|ZP_07658092.1| ribosome-binding factor A [Roseibium sp. TrichSKD4]
gi|307773543|gb|EFO32759.1| ribosome-binding factor A [Roseibium sp. TrichSKD4]
Length = 136
Score = 76.6 bits (187), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 71/115 (61%), Gaps = 5/115 (4%)
Query: 4 KNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP 63
K P S+R LRVGE VR L ++ EFQD + +I++ EV M+ DLR+AT + +P
Sbjct: 10 KGP--SQRQLRVGETVRKELSDILTRGEFQDPALEGAIITVPEVRMTPDLRLATCLV-MP 66
Query: 64 LDVS-PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
L ++V +ALN + K++RG++ R L ++Y+P+LRF DT ++ +L+
Sbjct: 67 LGGGDGEKVAAALNKSAKYLRGQVSRRL-TMKYMPDLRFVLDTRFDDDDRIGSLL 120
>gi|170740828|ref|YP_001769483.1| ribosome-binding factor A [Methylobacterium sp. 4-46]
gi|259552032|sp|B0UL49|RBFA_METS4 RecName: Full=Ribosome-binding factor A
gi|168195102|gb|ACA17049.1| ribosome-binding factor A [Methylobacterium sp. 4-46]
Length = 139
Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 71/117 (60%), Gaps = 7/117 (5%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL---D 65
S+R RV E VR A+ V+ + QD ++SR VI++ EV MS DL++AT Y+ +PL D
Sbjct: 11 SQRQQRVAELVRHAIAEVLSRGDLQDPVLSRHVITVPEVRMSPDLKLATAYV-MPLGGQD 69
Query: 66 VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
+P V+ AL N K +R + R + NL++ PELRFR D + +++ L+ K+
Sbjct: 70 EAP--VLEALERNRKALRQEVARRV-NLKFAPELRFRRDETFDEAARIDRLLRSEKV 123
>gi|217978440|ref|YP_002362587.1| ribosome-binding factor A [Methylocella silvestris BL2]
gi|254789756|sp|B8EIA6|RBFA_METSB RecName: Full=Ribosome-binding factor A
gi|217503816|gb|ACK51225.1| ribosome-binding factor A [Methylocella silvestris BL2]
Length = 155
Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 76/126 (60%), Gaps = 3/126 (2%)
Query: 3 NKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL 62
+ + S+R LRV E VR A+ ++ ++ D + VI++ +V MS DL++ATVY+ +
Sbjct: 7 QQGGQPSQRMLRVAELVRHAMSELLTRSDINDPALEGKVITVPDVRMSPDLKLATVYV-M 65
Query: 63 PLDVSP-DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
PL V++AL+ + K +RG I R + +LR+ P++RF+ D + K++AL+ PK
Sbjct: 66 PLGGENVTEVLAALDRHKKLLRGEIARRV-SLRFAPDVRFKADPGFEYSGKIDALLSSPK 124
Query: 122 IPVALE 127
+ LE
Sbjct: 125 VKQDLE 130
>gi|295687490|ref|YP_003591183.1| ribosome-binding factor A [Caulobacter segnis ATCC 21756]
gi|295429393|gb|ADG08565.1| ribosome-binding factor A [Caulobacter segnis ATCC 21756]
Length = 148
Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 68/119 (57%), Gaps = 7/119 (5%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS- 67
S+R LR GE +R AL+ ++ E QD + +++SEV MS DL+ A ++ PL
Sbjct: 16 SQRQLRAGELIRHALVEILREEELQDEALHNISVTVSEVRMSPDLKHAVCFVE-PLGAGL 74
Query: 68 ----PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
VI LN KF+RGR+GRS+ ++++ P+L+F +D S + ++ L PK+
Sbjct: 75 TGEDTTEVIKGLNRVSKFLRGRLGRSI-DMKFTPDLKFIHDESFGTAAYMDKLFLDPKV 132
>gi|94497013|ref|ZP_01303587.1| ribosome-binding factor A [Sphingomonas sp. SKA58]
gi|94423689|gb|EAT08716.1| ribosome-binding factor A [Sphingomonas sp. SKA58]
Length = 133
Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 67/122 (54%), Gaps = 1/122 (0%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
M N+ S R LRVGE+VR L ++ + D ++S V+S++EV MS DLR ATV+I
Sbjct: 1 MSNQPEGPSVRLLRVGEQVRHVLSEILQRGDVHDDVLSSHVVSVTEVRMSPDLRHATVFI 60
Query: 61 SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
L D V+ AL N +++ + +R L+Y +L+F D S ++ L+ P
Sbjct: 61 KSLLGQDEDAVLKALRTNTAYLQREVAHRIR-LKYAAKLKFLSDESFDEGSHIDKLLRDP 119
Query: 121 KI 122
K+
Sbjct: 120 KV 121
>gi|146337228|ref|YP_001202276.1| ribosome-binding factor A [Bradyrhizobium sp. ORS278]
gi|166218424|sp|A4YJF0|RBFA_BRASO RecName: Full=Ribosome-binding factor A
gi|146190034|emb|CAL74026.1| Ribosome-binding factor A [Bradyrhizobium sp. ORS278]
Length = 138
Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 67/116 (57%), Gaps = 3/116 (2%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV- 66
S+R LRV E VR A+ ++ D + +I++ EV MS DL++AT+YI +PL
Sbjct: 14 GSQRQLRVAETVRHAVADILSQGSAHDPDLEGHIITVPEVRMSPDLKLATIYI-MPLGGR 72
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
D V++AL N KF+RG + R + NL++ P++RFR D ++ L+ P +
Sbjct: 73 DTDVVLAALERNKKFLRGEVARRV-NLKFAPDIRFRVDERFDEAERIEKLLRTPAV 127
>gi|87200501|ref|YP_497758.1| ribosome-binding factor A [Novosphingobium aromaticivorans DSM
12444]
gi|123488757|sp|Q2G5E9|RBFA_NOVAD RecName: Full=Ribosome-binding factor A
gi|87136182|gb|ABD26924.1| ribosome-binding factor A [Novosphingobium aromaticivorans DSM
12444]
Length = 135
Score = 74.7 bits (182), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 66/122 (54%), Gaps = 2/122 (1%)
Query: 2 KNKNPKN-SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
+ +P+ S R L+VGE+VR L ++ E D ++S +S++EV MS DLR ATV+I
Sbjct: 4 QQTSPETRSVRLLKVGEQVRHILSELLARQEVHDDVLSAHTVSVTEVRMSPDLRHATVFI 63
Query: 61 SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
L D V+ AL N F + + + LR L+Y L+F D S K+ L+ P
Sbjct: 64 KALLGEDEDLVLKALRTNTAFFQREVAQRLR-LKYAARLKFLADESFDVASKIETLLADP 122
Query: 121 KI 122
K+
Sbjct: 123 KV 124
>gi|220924487|ref|YP_002499789.1| ribosome-binding factor A [Methylobacterium nodulans ORS 2060]
gi|259552023|sp|B8IEB4|RBFA_METNO RecName: Full=Ribosome-binding factor A
gi|219949094|gb|ACL59486.1| ribosome-binding factor A [Methylobacterium nodulans ORS 2060]
Length = 135
Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 70/117 (59%), Gaps = 7/117 (5%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL---D 65
++R RV E VR A+ V+ + QD ++SR VI++ EV MS DL++AT Y+ +PL D
Sbjct: 11 TQRQQRVAELVRHAIAEVLSRGDLQDPVLSRHVITVPEVRMSPDLKLATAYV-MPLGGED 69
Query: 66 VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
P VI AL N K +R + R + NL++ P+LRFR D + +++ L+ K+
Sbjct: 70 EQP--VIEALERNRKVLRQEVARRV-NLKFAPDLRFRRDETFDEAARIDRLLRSDKV 123
>gi|148259246|ref|YP_001233373.1| ribosome-binding factor A [Acidiphilium cryptum JF-5]
gi|326402399|ref|YP_004282480.1| ribosome-binding factor A [Acidiphilium multivorum AIU301]
gi|172047759|sp|A5FV22|RBFA_ACICJ RecName: Full=Ribosome-binding factor A
gi|146400927|gb|ABQ29454.1| ribosome-binding factor A [Acidiphilium cryptum JF-5]
gi|325049260|dbj|BAJ79598.1| ribosome-binding factor A [Acidiphilium multivorum AIU301]
Length = 140
Score = 73.6 bits (179), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 67/114 (58%), Gaps = 1/114 (0%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
S+R RV E++R L + EF+D ++ I+++EV MS DL+ ATV++S
Sbjct: 18 SQRQRRVAEDLRHRLAELFARTEFRDPELAGVHITVAEVRMSPDLKHATVFVSRLGATDI 77
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
DR + AL F+RG IG LR +++VP+L F+ D +L ++N L+ P++
Sbjct: 78 DRYLPALKRIAPFLRGEIGHGLR-MKFVPDLHFQPDHALDEATRINELLHRPEV 130
>gi|312112865|ref|YP_004010461.1| ribosome-binding factor A [Rhodomicrobium vannielii ATCC 17100]
gi|311217994|gb|ADP69362.1| ribosome-binding factor A [Rhodomicrobium vannielii ATCC 17100]
Length = 128
Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 73/121 (60%), Gaps = 5/121 (4%)
Query: 3 NKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL 62
+K P S+R LR GE +R AL + + +D + +I+++EV +S DL+ ATV+ S
Sbjct: 7 SKGP--SQRQLRAGELLRHALAEIFRLEDIEDDELKGQLITVAEVRVSPDLKHATVFAS- 63
Query: 63 PLDVSPDRVIS-ALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
L P VI+ ALN + +F+RG + R + L+YVPEL FR D +L + +++ L+ P
Sbjct: 64 ALGGKPGDVIAKALNRHARFLRGELARRI-ELKYVPELVFRADHALDAAERIDELLRSPD 122
Query: 122 I 122
+
Sbjct: 123 V 123
>gi|296285007|ref|ZP_06863005.1| ribosome-binding factor A [Citromicrobium bathyomarinum JL354]
Length = 137
Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 64/116 (55%), Gaps = 1/116 (0%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
+ S R L+VGE VR L ++ E D +S +S++EV M+ DL+ A+VY+ L
Sbjct: 10 QQSVRVLKVGERVRHILSELLTRGEVHDETLSAHSVSVTEVKMTPDLKHASVYVKPLLGE 69
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
D V+ AL N F + + + L L++ P+L+FR D S + ++ L+ PK+
Sbjct: 70 DEDVVVKALRTNTAFFQREVAKRL-GLKFAPKLQFRPDESFEEADRIERLLNDPKV 124
>gi|209966180|ref|YP_002299095.1| ribosome-binding factor A [Rhodospirillum centenum SW]
gi|209959646|gb|ACJ00283.1| ribosome-binding factor A [Rhodospirillum centenum SW]
Length = 178
Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 70/122 (57%), Gaps = 2/122 (1%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
K N S+R LRVGEE+R AL ++ +F+D + ++++EV +S DL+ AT ++
Sbjct: 8 TKPGNTGPSQRQLRVGEEIRHALADILRRGDFRDPGLQDVNVTVTEVRVSPDLKNATAFV 67
Query: 61 SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
+PL VI+ALN F R +I ++R L++ P + F+ DTS +++ L+ P
Sbjct: 68 -MPLGGGHPEVIAALNHAAPFFRAQIAHAVR-LQHAPRIGFQEDTSFAYADRIDRLLHDP 125
Query: 121 KI 122
+
Sbjct: 126 AV 127
>gi|16124293|ref|NP_418857.1| ribosome-binding factor A [Caulobacter crescentus CB15]
gi|221232975|ref|YP_002515411.1| ribosome-binding factor A [Caulobacter crescentus NA1000]
gi|20978655|sp|Q9AC30|RBFA_CAUCR RecName: Full=Ribosome-binding factor A
gi|254789739|sp|B8GWZ3|RBFA_CAUCN RecName: Full=Ribosome-binding factor A
gi|13421129|gb|AAK22025.1| ribosome-binding factor A [Caulobacter crescentus CB15]
gi|220962147|gb|ACL93503.1| ribosome-binding factor A [Caulobacter crescentus NA1000]
Length = 149
Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 68/119 (57%), Gaps = 7/119 (5%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS- 67
S+R LR GE +R AL+ ++ E QD + +++SEV MS DL+ A ++ PL
Sbjct: 16 SQRQLRAGELIRHALVEILREEELQDEALQNISVTVSEVRMSPDLKHAICFVE-PLGAGL 74
Query: 68 ----PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
+I LN KF+RGR+GRS+ ++++ P+L+F +D S + ++ L P++
Sbjct: 75 TGQDTTDIIKGLNRVSKFLRGRLGRSI-DMKFTPDLKFIHDESFGTAAYMDKLFLDPRV 132
>gi|332188278|ref|ZP_08390005.1| ribosome-binding factor A [Sphingomonas sp. S17]
gi|332011674|gb|EGI53752.1| ribosome-binding factor A [Sphingomonas sp. S17]
Length = 135
Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 73/129 (56%), Gaps = 2/129 (1%)
Query: 1 MKNKNPKN-SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVY 59
++ KNP S R LRVGE+VR L ++ + D +++ ++S++EV MS DLR ATV+
Sbjct: 2 VQAKNPAEPSVRLLRVGEQVRHILSEILARGDVHDETLAKHMVSVTEVRMSPDLRHATVF 61
Query: 60 ISLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ L + VI AL N +++ + ++ ++Y +L+F D S +++L+
Sbjct: 62 VKPLLGKDEEVVIKALRTNTAYLQREVAHRVK-MKYAAKLKFLADESFDEGSHIDSLLRS 120
Query: 120 PKIPVALEK 128
PK+ LE+
Sbjct: 121 PKVSQDLEE 129
>gi|296448275|ref|ZP_06890169.1| ribosome-binding factor A [Methylosinus trichosporium OB3b]
gi|296254227|gb|EFH01360.1| ribosome-binding factor A [Methylosinus trichosporium OB3b]
Length = 129
Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 69/117 (58%), Gaps = 3/117 (2%)
Query: 13 LRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV-SPDRV 71
LRV E VR +L ++ E D ++ V+++S V MS DL++ATVY+ +PL + V
Sbjct: 2 LRVAELVRHSLAQMLSRGEIVDPVLETHVVTVSRVAMSPDLKLATVYV-MPLGGKDGEEV 60
Query: 72 ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALEK 128
+ A + KF+RG I + NL++ PE+RFR D S + +++AL+ ++ LE
Sbjct: 61 VRAFERHKKFLRGEIAHHV-NLKFAPEVRFRIDDSFDNVARIDALLNSERVRRDLEH 116
>gi|218530873|ref|YP_002421689.1| ribosome-binding factor A [Methylobacterium chloromethanicum CM4]
gi|259552017|sp|B7KQJ7|RBFA_METC4 RecName: Full=Ribosome-binding factor A
gi|218523176|gb|ACK83761.1| ribosome-binding factor A [Methylobacterium chloromethanicum CM4]
Length = 145
Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 72/122 (59%), Gaps = 7/122 (5%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL---D 65
++R RV E +R AL V+ + QD ++ V+++ EV MS DL++AT Y+ +PL D
Sbjct: 11 TQRQQRVAELIRHALAEVLQRGDIQDPVLGSHVVTVPEVRMSPDLKLATAYV-MPLGGQD 69
Query: 66 VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
+P VI+AL + K +R + R + NL++ P+LRFR D + +++ L+ K+
Sbjct: 70 EAP--VIAALERHKKILRQEVARRV-NLKFAPDLRFRRDETFDEAARIDQLLRSEKVQRD 126
Query: 126 LE 127
LE
Sbjct: 127 LE 128
>gi|163852115|ref|YP_001640158.1| ribosome-binding factor A [Methylobacterium extorquens PA1]
gi|240139444|ref|YP_002963919.1| ribosome-binding factor A [Methylobacterium extorquens AM1]
gi|254561859|ref|YP_003068954.1| ribosome-binding factor A [Methylobacterium extorquens DM4]
gi|259552020|sp|A9W681|RBFA_METEP RecName: Full=Ribosome-binding factor A
gi|163663720|gb|ABY31087.1| ribosome-binding factor A [Methylobacterium extorquens PA1]
gi|240009416|gb|ACS40642.1| ribosome-binding factor A [Methylobacterium extorquens AM1]
gi|254269137|emb|CAX25101.1| ribosome-binding factor A [Methylobacterium extorquens DM4]
Length = 145
Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 72/122 (59%), Gaps = 7/122 (5%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL---D 65
++R RV E +R AL V+ + QD ++ V+++ EV MS DL++AT Y+ +PL D
Sbjct: 11 TQRQQRVAELIRHALAEVLQRGDIQDPVLGSHVVTVPEVRMSPDLKLATAYV-MPLGGQD 69
Query: 66 VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
+P VI+AL + K +R + R + NL++ P+LRFR D + +++ L+ K+
Sbjct: 70 EAP--VIAALERHKKILRQEVARRV-NLKFAPDLRFRRDETFDEAARIDQLLRSEKVQRD 126
Query: 126 LE 127
LE
Sbjct: 127 LE 128
>gi|148251682|ref|YP_001236267.1| ribosome-binding factor A [Bradyrhizobium sp. BTAi1]
gi|166218423|sp|A5E867|RBFA_BRASB RecName: Full=Ribosome-binding factor A
gi|146403855|gb|ABQ32361.1| ribosome-binding factor A [Bradyrhizobium sp. BTAi1]
Length = 138
Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 66/116 (56%), Gaps = 3/116 (2%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV- 66
S+R LRV E VR A+ ++ D + +I++ EV MS DL++AT+YI +PL
Sbjct: 14 GSQRQLRVAETVRHAVADILSQGSAHDPDLEGHIITVPEVRMSPDLKLATIYI-MPLGGR 72
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
+ V++AL N KF+RG I + NL++ P++RFR D ++ L+ P +
Sbjct: 73 DTEIVLAALERNKKFLRGEIAHRV-NLKFAPDIRFRADERFDEAERIEKLLRTPAV 127
>gi|170750124|ref|YP_001756384.1| ribosome-binding factor A [Methylobacterium radiotolerans JCM 2831]
gi|259552029|sp|B1LWZ6|RBFA_METRJ RecName: Full=Ribosome-binding factor A
gi|170656646|gb|ACB25701.1| ribosome-binding factor A [Methylobacterium radiotolerans JCM 2831]
Length = 142
Score = 72.0 bits (175), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 68/112 (60%), Gaps = 7/112 (6%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP---LD 65
S+R RV E VR AL V+ + QD ++ V+++ EV MS DL++AT Y+ +P LD
Sbjct: 11 SQRQQRVAELVRHALAEVLQRGDIQDPVLGTHVVTVPEVRMSPDLKLATAYV-MPLGGLD 69
Query: 66 VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+P VI+AL + K +R + R + NL++ PELRFR D + +++ L+
Sbjct: 70 EAP--VIAALERHRKVLRQAVARRV-NLKFAPELRFRRDETFDEAARIDRLL 118
>gi|85710525|ref|ZP_01041589.1| ribosome-binding factor A [Erythrobacter sp. NAP1]
gi|85687703|gb|EAQ27708.1| ribosome-binding factor A [Erythrobacter sp. NAP1]
Length = 142
Score = 71.6 bits (174), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 65/120 (54%), Gaps = 5/120 (4%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
+ S R L+VGE VR L ++ E D ++S I+++EV M+ DLR AT Y+ L
Sbjct: 11 QQSVRVLKVGERVRHILSELLARQEVHDEVVSASNIAVTEVRMTPDLRHATAYVKPLLAA 70
Query: 67 SPD----RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
P V+ AL N F++ + + L L++ P+L+FR D S ++ AL+ PK+
Sbjct: 71 GPKISDADVVHALRQNTAFLQREVAKRL-GLKFAPKLKFRSDESFAEADRIEALLRDPKV 129
>gi|294011607|ref|YP_003545067.1| ribosome-binding factor A [Sphingobium japonicum UT26S]
gi|292674937|dbj|BAI96455.1| ribosome-binding factor A [Sphingobium japonicum UT26S]
Length = 133
Score = 71.6 bits (174), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 68/128 (53%), Gaps = 1/128 (0%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
M N S R LRVGE+VR L ++ + D +++ V+S++EV MS DLR ATV+I
Sbjct: 1 MPAPNEGPSVRLLRVGEQVRHVLSDILQRGDVHDDVLASHVVSVTEVRMSPDLRHATVFI 60
Query: 61 SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
L V+ AL N F++ + +R L+Y +L+F D S ++ L+ P
Sbjct: 61 KSLLGQDEAAVLKALRTNTAFLQREVATRIR-LKYAAKLKFLADESFDEGSHIDKLLRDP 119
Query: 121 KIPVALEK 128
K+ LE+
Sbjct: 120 KVARDLEQ 127
>gi|118590501|ref|ZP_01547903.1| ribosome-binding factor A [Stappia aggregata IAM 12614]
gi|118436964|gb|EAV43603.1| ribosome-binding factor A [Stappia aggregata IAM 12614]
Length = 170
Score = 70.9 bits (172), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 72/121 (59%), Gaps = 3/121 (2%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-DVS 67
S+R LRVGE VR L ++ F D + +++I EV M+ DLR+AT + +PL V+
Sbjct: 42 SQRQLRVGETVRKELSDILTRGRFSDPDLDGVIVTIPEVRMTPDLRLATCLV-MPLGGVN 100
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALE 127
+ V ALN + K++RG++ R L ++Y+P+LRF DT ++ L+ P++ L+
Sbjct: 101 AENVEKALNRSAKYLRGQVSRRL-TMKYMPDLRFVLDTRFDDDDRIGTLLHSPEVSRDLD 159
Query: 128 K 128
+
Sbjct: 160 E 160
>gi|316931580|ref|YP_004106562.1| ribosome-binding factor A [Rhodopseudomonas palustris DX-1]
gi|315599294|gb|ADU41829.1| ribosome-binding factor A [Rhodopseudomonas palustris DX-1]
Length = 137
Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 72/128 (56%), Gaps = 3/128 (2%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
K+ S R+LRVGE VR A+ ++ D ++ ++++ EV MS DL++AT+Y+
Sbjct: 6 QKSSPSGGSTRSLRVGELVRHAVAEILSQGGVHDPVLESHLVTVPEVRMSPDLKLATIYV 65
Query: 61 SLPLDVSPDR-VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+PL ++ V+ AL + +F+RG I + L++ P++RFR D +++ L+
Sbjct: 66 -MPLGGRDEKLVLDALEHHKRFLRGEIAHRV-ALKFAPDIRFRIDERFAEAERIDRLLRS 123
Query: 120 PKIPVALE 127
P + LE
Sbjct: 124 PAVQKDLE 131
>gi|83313169|ref|YP_423433.1| ribosome-binding factor A [Magnetospirillum magneticum AMB-1]
gi|123540595|sp|Q2VZV1|RBFA_MAGMM RecName: Full=Ribosome-binding factor A
gi|82948010|dbj|BAE52874.1| Ribosome-binding factor A [Magnetospirillum magneticum AMB-1]
Length = 142
Score = 70.5 bits (171), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 74/117 (63%), Gaps = 7/117 (5%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL---D 65
S+R LRVGEE+R A+ VI EF+D + I+++EV +S DLR ATV++ +PL D
Sbjct: 9 SQRQLRVGEELRHAIAMVIERGEFRDPDLLGRAITVTEVRVSPDLRNATVFV-VPLGGGD 67
Query: 66 VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
V+P +++ L F+R I R + LR VP+L F+ DT+ + ++++++ P++
Sbjct: 68 VAP--ILAGLKRAKAFLRHEISRMV-ELRAVPDLWFQEDTTFDTASRIDSILNSPEV 121
>gi|23016106|ref|ZP_00055866.1| COG0858: Ribosome-binding factor A [Magnetospirillum
magnetotacticum MS-1]
Length = 142
Score = 70.5 bits (171), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 74/117 (63%), Gaps = 7/117 (5%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL---D 65
S+R LRVGEE+R A+ VI EF+D + I+++EV +S DLR ATV++ +PL D
Sbjct: 9 SQRQLRVGEELRHAIAMVIERGEFRDPDLLGRAITVTEVRVSPDLRNATVFV-VPLGGGD 67
Query: 66 VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
V+P +++ L F+R I R + LR VP+L F+ DT+ + ++++++ P++
Sbjct: 68 VAP--ILAGLKRAKAFLRHEISRMV-ELRAVPDLWFQEDTTFDTASRIDSILNSPEV 121
>gi|114329055|ref|YP_746212.1| ribosome-binding factor A [Granulibacter bethesdensis CGDNIH1]
gi|122325999|sp|Q0BPG3|RBFA_GRABC RecName: Full=Ribosome-binding factor A
gi|114317229|gb|ABI63289.1| ribosome-binding factor A [Granulibacter bethesdensis CGDNIH1]
Length = 138
Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 69/119 (57%), Gaps = 3/119 (2%)
Query: 6 PKN--SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP 63
PK S+R LRV EE+R L V EF+D ++ +I+EV +S DL+ ATV+IS
Sbjct: 15 PKGAPSQRQLRVAEEIRHVLAGVFARQEFRDPELATTTFTINEVRISPDLKHATVFISRL 74
Query: 64 LDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
+ ++ L ++RG + + +R LRY PEL F+ D++L+ +++L+ P++
Sbjct: 75 GSSEIEPLLPNLKRVATYLRGEVAKVMR-LRYAPELHFQPDSALEYAMHVDSLLRRPEV 132
>gi|296534730|ref|ZP_06897109.1| ribosome-binding factor A [Roseomonas cervicalis ATCC 49957]
gi|296264943|gb|EFH11189.1| ribosome-binding factor A [Roseomonas cervicalis ATCC 49957]
Length = 144
Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 69/115 (60%), Gaps = 3/115 (2%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVS 67
S+R LRV EEVR AL V + EF D +S I+++EV S DL+ T ++S L V+
Sbjct: 12 SQRMLRVAEEVRHALSAVFMRGEFHDPDLSGRHITVTEVRASPDLKHMTCFVSALGRPVT 71
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
+ + L F+R ++ R++R L++ PE+ F+ DT+L K++A+M P++
Sbjct: 72 KEE-LQGLRRVQPFLRTQVARAVR-LKFAPEMHFQPDTALDYAMKIDAVMRRPEV 124
>gi|254500779|ref|ZP_05112930.1| ribosome-binding factor A [Labrenzia alexandrii DFL-11]
gi|222436850|gb|EEE43529.1| ribosome-binding factor A [Labrenzia alexandrii DFL-11]
Length = 137
Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 69/120 (57%), Gaps = 3/120 (2%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-DVS 67
S+R L+VGE VR L + F D + +I+I EV M+ DLR+AT + +PL +
Sbjct: 13 SQRQLKVGETVRKELSDIFTRGRFSDPDLDGVIITIPEVRMTPDLRLATCLV-MPLGGAN 71
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALE 127
++V ALN + K++RG++ R L ++Y+P+LRF DT ++ L+ P + L+
Sbjct: 72 AEKVEKALNRSAKYLRGQVSRRL-TMKYMPDLRFVLDTRFDDDDRIGTLLHSPDVARDLD 130
>gi|83945012|ref|ZP_00957378.1| ribosome-binding factor A [Oceanicaulis alexandrii HTCC2633]
gi|83851794|gb|EAP89649.1| ribosome-binding factor A [Oceanicaulis alexandrii HTCC2633]
Length = 140
Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 65/120 (54%), Gaps = 1/120 (0%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS 67
S+R LR GE VR A+ +I D ++ ++I+E +S DLR ATVY+ L
Sbjct: 17 QSQRQLRAGELVRRAVSDIIREGRVHDPHVNTAAVTITEARVSPDLRHATVYVDLLGGGD 76
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALE 127
+ V +ALN FI+ +GR + L++ P+LRF D + +++AL+ P + LE
Sbjct: 77 REAVATALNHAAGFIQRELGRQI-ELKFTPKLRFAVDDRIDDVREVDALLDRPSVKRDLE 135
>gi|307293336|ref|ZP_07573182.1| ribosome-binding factor A [Sphingobium chlorophenolicum L-1]
gi|306881402|gb|EFN12618.1| ribosome-binding factor A [Sphingobium chlorophenolicum L-1]
Length = 133
Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 68/128 (53%), Gaps = 1/128 (0%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
M N S R LRVGE+VR L ++ + D ++ V+S++EV MS DLR ATV+I
Sbjct: 1 MPAPNEGPSVRLLRVGEQVRHILSDILQRGDVHDDVLVSHVVSVTEVRMSPDLRHATVFI 60
Query: 61 SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
L + V+ AL N +++ + +R L+Y +L+F D S ++ L+ P
Sbjct: 61 KSLLGQDEEAVLKALRTNTAYLQREVATRIR-LKYAAKLKFLADESFDEGTHIDKLLRDP 119
Query: 121 KIPVALEK 128
K+ L++
Sbjct: 120 KVARDLDQ 127
>gi|89056527|ref|YP_511978.1| ribosome-binding factor A [Jannaschia sp. CCS1]
gi|123285867|sp|Q28K09|RBFA_JANSC RecName: Full=Ribosome-binding factor A
gi|88866076|gb|ABD56953.1| ribosome-binding factor A [Jannaschia sp. CCS1]
Length = 143
Score = 67.8 bits (164), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 71/116 (61%), Gaps = 7/116 (6%)
Query: 2 KNKN-PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
KN+N P S+R LRVGE +R L V+ + D ++ I+++EV S DL++ATVY+
Sbjct: 5 KNQNGPSKSQRQLRVGELIRRTLSTVLARADVHDPALNAMSITVAEVRTSSDLKIATVYV 64
Query: 61 SLPLDVS-PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNA 115
+PL S D I AL N +R +G+ L+ L+Y+P+LRF D Q++ +++A
Sbjct: 65 -MPLGGSGKDEAIEALKRNKGELRRLLGKDLK-LKYLPDLRFVID---QTFDQMDA 115
>gi|103486106|ref|YP_615667.1| ribosome-binding factor A [Sphingopyxis alaskensis RB2256]
gi|123078561|sp|Q1GVI8|RBFA_SPHAL RecName: Full=Ribosome-binding factor A
gi|98976183|gb|ABF52334.1| ribosome-binding factor A [Sphingopyxis alaskensis RB2256]
Length = 136
Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 68/126 (53%), Gaps = 1/126 (0%)
Query: 2 KNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS 61
K ++ S R LRVGE+VR L ++ + D +++ +S++EV MS DLR ATV++
Sbjct: 4 KEQSEGPSVRVLRVGEQVRHVLSEILARGDVHDDVLATHPVSVTEVRMSPDLRHATVFVK 63
Query: 62 LPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
L + V+ A+ N +++ + +R ++Y +L+F D S ++ L+ PK
Sbjct: 64 PLLGKDEEAVLKAMRTNTAYLQREVAHRIR-MKYAAKLKFLADDSFDEASHIDRLLRDPK 122
Query: 122 IPVALE 127
+ LE
Sbjct: 123 VARDLE 128
>gi|84500520|ref|ZP_00998769.1| ribosome-binding factor A [Oceanicola batsensis HTCC2597]
gi|84391473|gb|EAQ03805.1| ribosome-binding factor A [Oceanicola batsensis HTCC2597]
Length = 134
Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 62/108 (57%), Gaps = 3/108 (2%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
+ N P S+R LRVGE +R AL +++ + D ++R I++ EV S DL+VAT ++
Sbjct: 8 IHNDGPGPSQRQLRVGETIRRALSEILMRGDIHDPDLNRLSITVGEVRTSPDLKVATAFV 67
Query: 61 SLPL-DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSL 107
LPL D V+ L N +R IG+ L L++ P+LRFR D +
Sbjct: 68 -LPLGGTGQDVVVDLLARNKGELRRMIGKKL-GLKFTPDLRFRVDDTF 113
>gi|84684345|ref|ZP_01012246.1| ribosome-binding factor A [Maritimibacter alkaliphilus HTCC2654]
gi|84667324|gb|EAQ13793.1| ribosome-binding factor A [Rhodobacterales bacterium HTCC2654]
Length = 136
Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 68/114 (59%), Gaps = 6/114 (5%)
Query: 3 NKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL 62
N+ S+R LRVGE +R L V++ E D ++R I++ EV S DL++AT Y+ L
Sbjct: 7 NEGTGPSQRQLRVGELIRRTLSDVLMRGEIHDPDLNRMSITVGEVRTSPDLKIATAYV-L 65
Query: 63 PLDV-SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNA 115
PL +PD I AL N +R IG+ + NL++ P+LRF D +++ +++A
Sbjct: 66 PLGGKNPDEAIKALARNKHELRRFIGK-VTNLKFTPDLRFMID---ETFDQMDA 115
>gi|83950711|ref|ZP_00959444.1| ribosome-binding factor A [Roseovarius nubinhibens ISM]
gi|83838610|gb|EAP77906.1| ribosome-binding factor A [Roseovarius nubinhibens ISM]
Length = 131
Score = 67.0 bits (162), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 44/110 (40%), Positives = 62/110 (56%), Gaps = 6/110 (5%)
Query: 2 KNK---NPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATV 58
KNK P S+R LRVGE +R L V++ + D ++R +++ EV S DL++AT
Sbjct: 3 KNKFHDGPGPSQRQLRVGELIRRTLSEVLMRGDIHDPELNRMSVTVGEVRTSPDLKIATA 62
Query: 59 YISLPLDV-SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSL 107
Y+ LPL D ++ L N +R IGR L L+Y PELRFR D +
Sbjct: 63 YV-LPLGGKGQDVIVGLLARNQSELRRIIGRKL-GLKYAPELRFRLDQTF 110
>gi|326388035|ref|ZP_08209639.1| ribosome-binding factor A [Novosphingobium nitrogenifigens DSM
19370]
gi|326207536|gb|EGD58349.1| ribosome-binding factor A [Novosphingobium nitrogenifigens DSM
19370]
Length = 133
Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 63/114 (55%), Gaps = 1/114 (0%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
S R L+VGE+VR L ++ + D ++S +S++EV MS DLR A V++ L
Sbjct: 12 SVRLLKVGEQVRHILSELLSRQQVHDDVLSAHTVSVTEVRMSPDLRHAAVFVKSLLGADE 71
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
+ V+ AL N F + + L+ L+Y ++RF D S +++AL+ P++
Sbjct: 72 EIVLKALRTNTAFFQKEVAGRLK-LKYAAKIRFLPDESFDEANRIDALLADPRV 124
>gi|288959701|ref|YP_003450042.1| ribosome-binding factor A [Azospirillum sp. B510]
gi|288912009|dbj|BAI73498.1| ribosome-binding factor A [Azospirillum sp. B510]
Length = 190
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 64/114 (56%), Gaps = 1/114 (0%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
S+R LRVGEE+R AL + +F D ++ ++++EV +S DL ATV+ S
Sbjct: 16 SQRQLRVGEELRHALADLFRRGDFHDPELASLNVTVTEVRISPDLSNATVFYSTLGGERM 75
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
+ AL F+RG++ R + NLR+ P L F DTS ++++++ P++
Sbjct: 76 EEAQVALKRAAAFLRGQVARMV-NLRHAPTLSFEGDTSFDYAHRIDSILHSPEV 128
>gi|158421645|ref|YP_001522937.1| ribosome-binding factor A [Azorhizobium caulinodans ORS 571]
gi|172048016|sp|A8IG22|RBFA_AZOC5 RecName: Full=Ribosome-binding factor A
gi|158328534|dbj|BAF86019.1| ribosome-binding factor A [Azorhizobium caulinodans ORS 571]
Length = 145
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 67/117 (57%), Gaps = 7/117 (5%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL---D 65
S+R LRVGE VR AL + + D ++ +I++ EV MS DL++AT ++ +PL D
Sbjct: 12 SQRMLRVGELVRHALADALQRGDHLDPALAGTIITVPEVRMSPDLKIATCFV-MPLGGKD 70
Query: 66 VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
V+ VI L N K +R + R + L+ VP LRF DTS +++AL+ P +
Sbjct: 71 VNT--VIKLLAANQKLLRTEVARRV-ELKSVPSLRFLRDTSFDEGARIDALLRRPDV 124
>gi|182678032|ref|YP_001832178.1| ribosome-binding factor A [Beijerinckia indica subsp. indica ATCC
9039]
gi|238691234|sp|B2IIJ6|RBFA_BEII9 RecName: Full=Ribosome-binding factor A
gi|182633915|gb|ACB94689.1| ribosome-binding factor A [Beijerinckia indica subsp. indica ATCC
9039]
Length = 141
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 70/115 (60%), Gaps = 3/115 (2%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
S+R LRV E +R L ++ + D ++ VI++ +V MS DL++AT ++ +PL
Sbjct: 13 SQRMLRVAELIRHTLSDLLSRSIVNDPVLEGHVITVPDVRMSPDLKLATAFV-MPLGGKD 71
Query: 69 -DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
+ VI AL+ + KF+R I + + +LR+ P++RF+ D S K++AL+ P++
Sbjct: 72 INSVIEALDRHKKFLRSEIAQRI-HLRFAPDIRFKADESFDYGDKIDALLASPQV 125
>gi|310817250|ref|YP_003965214.1| ribosome-binding factor A [Ketogulonicigenium vulgare Y25]
gi|308755985|gb|ADO43914.1| ribosome-binding factor A [Ketogulonicigenium vulgare Y25]
Length = 145
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/113 (39%), Positives = 62/113 (54%), Gaps = 9/113 (7%)
Query: 2 KNKNPKN------SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRV 55
KN+ P + S+R LRVGE +R L V+ E D + R I++ EV S DL+V
Sbjct: 3 KNRFPNDPAFNGPSQRQLRVGELIRRTLSSVLQRGEVHDPELQRTSITVGEVRTSPDLKV 62
Query: 56 ATVYISLPLDVS-PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSL 107
AT Y+ LPL D V++AL N IR IG + L++VP+LRF D +
Sbjct: 63 ATAYV-LPLGGGNADLVLAALRRNKSEIRHMIGHGM-TLKFVPDLRFEIDRTF 113
>gi|328545916|ref|YP_004306025.1| ribosome-binding factor A [polymorphum gilvum SL003B-26A1]
gi|326415656|gb|ADZ72719.1| Ribosome-binding factor A [Polymorphum gilvum SL003B-26A1]
Length = 117
Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 67/116 (57%), Gaps = 3/116 (2%)
Query: 13 LRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-DVSPDRV 71
+RVGE VR L ++ + D + +I++ EV M+ DLR+A+ + +PL +R+
Sbjct: 1 MRVGELVRKELSDILTRGQLADPDLDGVIITVPEVRMTPDLRLASCLV-MPLGGAHGERI 59
Query: 72 ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALE 127
+ ALN + K+IRG++ R L L+Y+P+LRF DT ++ L+ P + +E
Sbjct: 60 VKALNRSAKYIRGQVSRRL-TLKYMPDLRFVLDTRFDDDDRIGHLLHSPDVQRDIE 114
>gi|114799473|ref|YP_758849.1| ribosome-binding factor A [Hyphomonas neptunium ATCC 15444]
gi|123323719|sp|Q0C5Z4|RBFA_HYPNA RecName: Full=Ribosome-binding factor A
gi|114739647|gb|ABI77772.1| ribosome-binding factor A [Hyphomonas neptunium ATCC 15444]
Length = 135
Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 66/117 (56%), Gaps = 4/117 (3%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
S+R LR GE VR AL +I +F+D +S ++++ EV S DL+ A ++++ D S
Sbjct: 12 SQRQLRAGEIVRHALAEIISREDFRDPDLSNVIVTVGEVRCSPDLKHANIFVTPLGDDSE 71
Query: 69 D---RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
+ R+ AL F+R R+GR + L++ PEL F D+S ++ L+ P++
Sbjct: 72 EGRKRLADALTRAKGFLRTRLGREI-ELKFTPELHFIADSSYDEATAIDRLLNDPRV 127
>gi|144899453|emb|CAM76317.1| Ribosome-binding factor A [Magnetospirillum gryphiswaldense MSR-1]
Length = 144
Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 67/115 (58%), Gaps = 3/115 (2%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
++R LRVGEE+R + +I E +D ++ I+++EV +S DL+ ATV++ +PL
Sbjct: 9 TQRQLRVGEELRHIIANIIERGEIRDPDLAGRAITVTEVRISPDLKNATVFV-VPLGGGE 67
Query: 69 -DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
+ V+ L FIR + R + +LR P+L F+ DTS ++AL+ P++
Sbjct: 68 VETVVKGLKRARSFIRHEVARQV-DLRIAPDLFFQADTSFDEASHIDALLRSPQV 121
>gi|330991193|ref|ZP_08315146.1| Ribosome-binding factor A [Gluconacetobacter sp. SXCC-1]
gi|329761779|gb|EGG78270.1| Ribosome-binding factor A [Gluconacetobacter sp. SXCC-1]
Length = 138
Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 67/114 (58%), Gaps = 1/114 (0%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
S+R LRV EEVR L + EF+D ++ I+++EV +S DL+ ATV+++
Sbjct: 19 SQRQLRVAEEVRRVLAEIFARTEFRDPDLADVRITVTEVRISPDLKHATVFVARLGRSDV 78
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
++ AL F+R R+ +LR LR VP+L F+ DT+L +++ ++ P++
Sbjct: 79 AELLPALKRVTPFLRTRLSHALR-LRGVPDLHFQPDTALDYAMEVDTMLRQPEV 131
>gi|162147161|ref|YP_001601622.1| ribosome-binding factor A [Gluconacetobacter diazotrophicus PAl 5]
gi|182676540|sp|A9HF21|RBFA_GLUDA RecName: Full=Ribosome-binding factor A
gi|161785738|emb|CAP55309.1| putative ribosome-binding factor A [Gluconacetobacter
diazotrophicus PAl 5]
Length = 136
Score = 63.9 bits (154), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 66/114 (57%), Gaps = 1/114 (0%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
++R LRVGEEVR L + EF+D + I+++EV +S DL+ AT +++
Sbjct: 19 TQRQLRVGEEVRRMLADLFARTEFRDPELVDVRITVTEVRISPDLKHATAFVARLGRSDV 78
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
+ ++ AL F+R R+ LR LR VPE+ F+ DT+L +++AL+ P +
Sbjct: 79 ETLLPALKRVAPFLRSRLSTGLR-LRGVPEIHFQPDTALDYAMEVDALLRQPDV 131
>gi|209544217|ref|YP_002276446.1| ribosome-binding factor A [Gluconacetobacter diazotrophicus PAl 5]
gi|209531894|gb|ACI51831.1| ribosome-binding factor A [Gluconacetobacter diazotrophicus PAl 5]
Length = 145
Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 66/114 (57%), Gaps = 1/114 (0%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
++R LRVGEEVR L + EF+D + I+++EV +S DL+ AT +++
Sbjct: 28 TQRQLRVGEEVRRMLADLFARTEFRDPELVDVRITVTEVRISPDLKHATAFVARLGRSDV 87
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
+ ++ AL F+R R+ LR LR VPE+ F+ DT+L +++AL+ P +
Sbjct: 88 ETLLPALKRVAPFLRSRLSTGLR-LRGVPEIHFQPDTALDYAMEVDALLRQPDV 140
>gi|149912793|ref|ZP_01901327.1| ribosome-binding factor A [Roseobacter sp. AzwK-3b]
gi|149813199|gb|EDM73025.1| ribosome-binding factor A [Roseobacter sp. AzwK-3b]
Length = 134
Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 70/125 (56%), Gaps = 6/125 (4%)
Query: 2 KNKNPKN---SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATV 58
KNK+ S+R LRVGE VR L +++ + D ++R +++ EV +S DLR+AT
Sbjct: 6 KNKSHDGQGPSQRQLRVGELVRRTLSDLLMRGDVHDPELNRMSVTVGEVRVSPDLRIATA 65
Query: 59 YISLPLDV-SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
Y+ LPL ++VI L N +R IG+ L +L+YVP+LRFR D + + +
Sbjct: 66 YV-LPLGGDGQEQVIDLLARNRGELRRLIGKKL-DLKYVPDLRFRIDETFDRMDETRRMF 123
Query: 118 CLPKI 122
K+
Sbjct: 124 ADEKV 128
>gi|85703968|ref|ZP_01035071.1| ribosome-binding factor A [Roseovarius sp. 217]
gi|85671288|gb|EAQ26146.1| ribosome-binding factor A [Roseovarius sp. 217]
Length = 131
Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 63/112 (56%), Gaps = 6/112 (5%)
Query: 2 KNK---NPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATV 58
KNK P S+R LRVGE +R L V++ + D ++R +++ EV S DL++AT
Sbjct: 3 KNKFHDGPGPSQRQLRVGELIRRTLSEVLMRGDIHDPDLNRISVTVGEVRTSSDLKIATA 62
Query: 59 YISLPLDV-SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQS 109
Y+ +PL D +I+ L N +R IG+ + L+Y P+LRFR D +
Sbjct: 63 YV-MPLGGEGQDDLIALLARNKHELRRMIGKKV-GLKYAPDLRFRLDETFDQ 112
>gi|149203493|ref|ZP_01880463.1| ribosome-binding factor A [Roseovarius sp. TM1035]
gi|149143326|gb|EDM31365.1| ribosome-binding factor A [Roseovarius sp. TM1035]
Length = 134
Score = 63.5 bits (153), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 63/112 (56%), Gaps = 6/112 (5%)
Query: 2 KNK---NPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATV 58
KNK P S+R LRVGE +R L V++ + D ++R +++ EV S DL++AT
Sbjct: 6 KNKFHDGPGPSQRQLRVGELIRRTLSEVLMRGDIHDPDLNRISVTVGEVRTSSDLKIATA 65
Query: 59 YISLPLDV-SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQS 109
Y+ +PL D +I+ L N +R IG+ + L+Y P+LRFR D +
Sbjct: 66 YV-MPLGGEGQDDLIALLARNKNELRRMIGKKV-GLKYAPDLRFRLDETFDQ 115
>gi|254477757|ref|ZP_05091143.1| ribosome-binding factor A [Ruegeria sp. R11]
gi|214032000|gb|EEB72835.1| ribosome-binding factor A [Ruegeria sp. R11]
Length = 131
Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 60/106 (56%), Gaps = 3/106 (2%)
Query: 3 NKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL 62
N+ S+R LRVGE +R AL + + D ++R I++ EV ++ DLR+AT Y+ L
Sbjct: 7 NEGAGPSQRQLRVGELIRRALSEIFTRGDIHDPDLNRMSITVGEVRVTSDLRIATAYV-L 65
Query: 63 PLDV-SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSL 107
PL D ++ + N +R IG+ L L++ PELRF+ D +
Sbjct: 66 PLGGKGQDEILKLMARNKGELRRMIGKKL-GLKFTPELRFQLDETF 110
>gi|332976851|gb|EGK13676.1| ribosome-binding factor A [Desmospora sp. 8437]
Length = 119
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 63/108 (58%), Gaps = 5/108 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
RA RVGE+V+ L +V L +E +D + ++++ V MS DL+ A VYIS+ D +
Sbjct: 5 RASRVGEQVKKELSYV-LQHEMKDPRVG--FVTVTAVEMSGDLQQAKVYISVLGDEEKKK 61
Query: 71 -VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ L F+R IGR ++ LR+ PEL F++D S++ ++ L+
Sbjct: 62 ETLEGLEKAKGFLRTEIGRRVQ-LRHTPELIFKFDESIEHGQHISKLL 108
>gi|114766563|ref|ZP_01445519.1| ribosome-binding factor A [Pelagibaca bermudensis HTCC2601]
gi|114541179|gb|EAU44231.1| ribosome-binding factor A [Roseovarius sp. HTCC2601]
Length = 131
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 58/104 (55%), Gaps = 3/104 (2%)
Query: 5 NPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL 64
P S+R LRVGE +R L V+ + D ++R I++ EV +S DL+VAT Y+ +PL
Sbjct: 9 GPGPSQRQLRVGELIRRTLSEVLTRGDIHDPELNRLSITVGEVTVSPDLKVATAYV-VPL 67
Query: 65 DVS-PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSL 107
PD + L N +R + + L L++ PE+RF+ D +
Sbjct: 68 GGGKPDEMFDLLKRNKSELRRAVSKGL-TLKFAPEIRFKLDETF 110
>gi|86139376|ref|ZP_01057945.1| ribosome-binding factor A [Roseobacter sp. MED193]
gi|85823879|gb|EAQ44085.1| ribosome-binding factor A [Roseobacter sp. MED193]
Length = 131
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 68/118 (57%), Gaps = 9/118 (7%)
Query: 2 KNKNPKN---SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATV 58
KNK+P+ S+R LRVGE +R L V+ E D ++R I++ EV ++ DLR+AT
Sbjct: 3 KNKSPEGRAPSQRQLRVGELIRRTLSEVLSRGELHDPELNRMSITVGEVRVTPDLRIATA 62
Query: 59 YISLPLDV-SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNA 115
Y+ LPL D ++ L N +R G+ L ++Y P+LRF+ D +Y +++A
Sbjct: 63 YV-LPLGGKGQDDLLKLLGRNKWELRTLAGKKL-GMKYTPDLRFQLDL---TYDQMDA 115
>gi|56698646|ref|YP_169023.1| ribosome-binding factor A [Ruegeria pomeroyi DSS-3]
gi|61214678|sp|Q5LLT6|RBFA_SILPO RecName: Full=Ribosome-binding factor A
gi|56680383|gb|AAV97049.1| ribosome-binding factor A [Ruegeria pomeroyi DSS-3]
Length = 131
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 62/110 (56%), Gaps = 6/110 (5%)
Query: 2 KNK---NPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATV 58
KNK P S+R LRVGE +R L V+ + D ++R I++ EV S DL++AT
Sbjct: 3 KNKFHDGPGPSQRQLRVGEVIRRTLSEVLARGDVHDPDLNRMSITVGEVRTSPDLKIATA 62
Query: 59 YISLPLDV-SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSL 107
Y+ LPL + V+ L+ N +R IG+ L L++ P+LRFR D +
Sbjct: 63 YV-LPLGGRGQEDVVQLLSRNKGELRRMIGKKL-GLKFTPDLRFRLDETF 110
>gi|110678026|ref|YP_681033.1| ribosome-binding factor A [Roseobacter denitrificans OCh 114]
gi|123172936|sp|Q16CE6|RBFA_ROSDO RecName: Full=Ribosome-binding factor A
gi|109454142|gb|ABG30347.1| ribosome-binding factor A [Roseobacter denitrificans OCh 114]
Length = 143
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 62/110 (56%), Gaps = 6/110 (5%)
Query: 2 KNK---NPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATV 58
KNK P S+R LRVGE +R AL V+ + D ++R +++ EV S DL++AT
Sbjct: 6 KNKFHTGPGPSQRQLRVGETIRRALSDVLARGDVHDTDLNRLSVTVGEVRASPDLKIATA 65
Query: 59 YISLPL-DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSL 107
Y+ LPL D VI+ L N +R + + L L++ P+LRF+ D +
Sbjct: 66 YV-LPLGGQGKDEVIALLARNKGELRRLVAKKL-TLKFAPDLRFQLDETF 113
>gi|58040016|ref|YP_191980.1| ribosome-binding factor A [Gluconobacter oxydans 621H]
gi|62510968|sp|Q5FQM2|RBFA_GLUOX RecName: Full=Ribosome-binding factor A
gi|58002430|gb|AAW61324.1| Ribosome-binding factor A [Gluconobacter oxydans 621H]
Length = 142
Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 65/114 (57%), Gaps = 1/114 (0%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
S R LRV EEVR L + EF+D + I+++EV +S D R AT +++
Sbjct: 21 STRQLRVAEEVRRVLAELFARTEFRDPELLDVRITVTEVRISPDFRHATAFVTRLGRSDV 80
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
+ ++ AL F+R + ++L NLR VPE+ F+ DT+L + +L+ +M P++
Sbjct: 81 EVLLPALKRVAPFLRTGLSKAL-NLRTVPEIHFQPDTALDNAMELDEIMRSPEV 133
>gi|163734260|ref|ZP_02141700.1| ribosome-binding factor A [Roseobacter litoralis Och 149]
gi|161392268|gb|EDQ16597.1| ribosome-binding factor A [Roseobacter litoralis Och 149]
Length = 140
Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 63/110 (57%), Gaps = 6/110 (5%)
Query: 2 KNK---NPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATV 58
KNK P S+R LRVGE +R AL V+ + D ++R +++ EV +S DL++AT
Sbjct: 3 KNKFHTGPGPSQRQLRVGETIRRALSDVLARGDVHDTDLNRLSVTVGEVRVSPDLKIATA 62
Query: 59 YISLPLDVSP-DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSL 107
Y+ LPL D VI+ L N +R + + L L++ P+LRF+ D +
Sbjct: 63 YV-LPLGGQGRDEVIALLARNKGELRRLVAKKL-TLKFAPDLRFQLDETF 110
>gi|225181386|ref|ZP_03734830.1| ribosome-binding factor A [Dethiobacter alkaliphilus AHT 1]
gi|225167967|gb|EEG76774.1| ribosome-binding factor A [Dethiobacter alkaliphilus AHT 1]
Length = 122
Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 65/110 (59%), Gaps = 4/110 (3%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSP 68
+RA RVGEE++ + IL E +D ++ +IS+++V ++ DLR A ++IS L +
Sbjct: 4 QRAHRVGEEIKREVSS-ILRTEIKDPRVT-GLISVTDVAVTRDLRHAKLFISMLGSEEEQ 61
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+SAL+ + FIR IG+ +R LR+ PE+ F D S+ +N ++
Sbjct: 62 QETLSALSRAVGFIRSEIGKRIR-LRHTPEISFHLDKSIAYGAHINKILA 110
>gi|83595111|ref|YP_428863.1| ribosome-binding factor A [Rhodospirillum rubrum ATCC 11170]
gi|123525360|sp|Q2RMR9|RBFA_RHORT RecName: Full=Ribosome-binding factor A
gi|83578025|gb|ABC24576.1| ribosome-binding factor A [Rhodospirillum rubrum ATCC 11170]
Length = 164
Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 68/121 (56%), Gaps = 5/121 (4%)
Query: 3 NKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL 62
+K P ++R LRVGEE+R AL V +D ++ ++++EV +S DLR ATV++ +
Sbjct: 6 DKAP--TQRQLRVGEEIRHALAEVFERGTVRDPAVAGVALTVTEVRISPDLRNATVFL-V 62
Query: 63 PLDVSP-DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
L P D V++ L F+R + + + ++VP+LRF D S +N L+ P+
Sbjct: 63 RLGGGPLDEVLTGLRKARAFLRREVAIRI-HTKFVPDLRFESDPSFDYAEYINGLLHRPE 121
Query: 122 I 122
+
Sbjct: 122 V 122
>gi|329847332|ref|ZP_08262360.1| ribosome-binding factor A [Asticcacaulis biprosthecum C19]
gi|328842395|gb|EGF91964.1| ribosome-binding factor A [Asticcacaulis biprosthecum C19]
Length = 118
Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 59/105 (56%), Gaps = 8/105 (7%)
Query: 24 MWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL------DVSPDRVISALNC 77
M ++ E D + ++I+EV MS DLR ATV++ PL +V ++ ALN
Sbjct: 1 MEILREEEIHDDALHDVSVTITEVRMSPDLRHATVFVE-PLGAGINSNVQVGAIVEALNK 59
Query: 78 NIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
+ K++RG +GR + ++++ P LRF +D S +++AL P I
Sbjct: 60 HSKYMRGVLGRMI-DMKFTPALRFLHDESFNEAARIDALFMRPDI 103
>gi|167644011|ref|YP_001681674.1| ribosome-binding factor A [Caulobacter sp. K31]
gi|189039531|sp|B0T172|RBFA_CAUSK RecName: Full=Ribosome-binding factor A
gi|167346441|gb|ABZ69176.1| ribosome-binding factor A [Caulobacter sp. K31]
Length = 164
Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 69/135 (51%), Gaps = 23/135 (17%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV-- 66
S+R LR GE +R AL+ ++ + D ++ ++ISEV MS DL+ A ++ PL
Sbjct: 16 SQRQLRAGELIRHALVDILREEDLVDPALAGISVTISEVRMSADLKHAICFVE-PLGASI 74
Query: 67 -------------------SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSL 107
SP V++ L KF+RG++ +++ ++++ PEL+F +D +
Sbjct: 75 APQVEREPSSPSRTVVVPGSPAEVVAGLTRLTKFLRGKLAKTI-DMKFTPELKFLHDETF 133
Query: 108 QSYWKLNALMCLPKI 122
S ++ L P++
Sbjct: 134 NSATYMDRLFEDPRV 148
>gi|149185841|ref|ZP_01864156.1| ribosome-binding factor A [Erythrobacter sp. SD-21]
gi|148830402|gb|EDL48838.1| ribosome-binding factor A [Erythrobacter sp. SD-21]
Length = 133
Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 1/114 (0%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
S R L+VGE VR L ++ E D ++ I+++EV M+ DLR A Y+ L
Sbjct: 13 SVRVLKVGERVRHILSELLARGEAHDDVLRAHNIAVTEVRMTPDLRNAKAYVKPLLGKDE 72
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
V+ AL N F + + + L L++ P+L F+ D S ++ L+ P++
Sbjct: 73 AEVLKALRTNTAFFQKEVAQRL-GLKFAPKLSFKPDESFDEAGRIERLLDDPRV 125
>gi|224476398|ref|YP_002634004.1| ribosome-binding factor A [Staphylococcus carnosus subsp. carnosus
TM300]
gi|254789763|sp|B9DPD6|RBFA_STACT RecName: Full=Ribosome-binding factor A
gi|222421005|emb|CAL27819.1| putative ribosome-binding factor A [Staphylococcus carnosus subsp.
carnosus TM300]
Length = 115
Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 64/108 (59%), Gaps = 5/108 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
RA RVGE+++ LM +I NN+ +D I I+I++V ++ DL +A VY++ L + D
Sbjct: 5 RAERVGEQMKKELMDII-NNKVKDPRIG--FITITDVQVTNDLSLAKVYLTVLGNEKEVD 61
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
AL FI+ +G +R LR VPEL+F YD S++ K+ ++
Sbjct: 62 DTFKALEKAKGFIKSELGSRMR-LRIVPELQFEYDHSIEYGNKIEKMI 108
>gi|227486450|ref|ZP_03916766.1| ribosome-binding factor A [Anaerococcus lactolyticus ATCC 51172]
gi|227235631|gb|EEI85646.1| ribosome-binding factor A [Anaerococcus lactolyticus ATCC 51172]
Length = 127
Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 66/112 (58%), Gaps = 2/112 (1%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD-V 66
N +R R+ EV+ + +I+++ RL + ++S+++V ++ DL A +YIS+ D
Sbjct: 2 NKKRTARISSEVKREISKIIMDDLNDPRLSAEAMVSVTDVEVTNDLSYADIYISVLGDNK 61
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ D V+ ALN +I+ IG +R LR +PE RF++D S++ ++ L+
Sbjct: 62 TKDGVMEALNQAKGYIKILIGERMR-LRSMPEFRFKFDNSIEHGAYMDKLIA 112
>gi|220927911|ref|YP_002504820.1| ribosome-binding factor A [Clostridium cellulolyticum H10]
gi|219998239|gb|ACL74840.1| ribosome-binding factor A [Clostridium cellulolyticum H10]
Length = 117
Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 59/108 (54%), Gaps = 4/108 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
R +R+ EEV+ + +I N+ RL S ++SI ++ DLR A VY+S D
Sbjct: 4 RIVRISEEVKKEISNIIQNDIKDPRLPS--MVSIVSCSVTKDLRYAKVYVSVFGNDEQKK 61
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
ISAL FIR +G ++ LRY PE+ F DTS++ + +N L+
Sbjct: 62 NAISALKSAAGFIRRELGHRVQ-LRYTPEIHFELDTSIEHGFHINKLL 108
>gi|84515137|ref|ZP_01002500.1| ribosome-binding factor A [Loktanella vestfoldensis SKA53]
gi|84511296|gb|EAQ07750.1| ribosome-binding factor A [Loktanella vestfoldensis SKA53]
Length = 134
Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 61/111 (54%), Gaps = 3/111 (2%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-DVS 67
++R LRVGE +R L ++ E D ++R I++ EV MS DLR+AT +I LPL +
Sbjct: 16 TQRMLRVGEMIRRTLSEILQRGEVHDPDLARMSITVGEVRMSPDLRIATAFI-LPLGGIG 74
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ + AL N +R + + ++++ PELRF+ D + AL+
Sbjct: 75 KEEALDALRRNRHEVRHLVVKG-GSMKFAPELRFQLDGTFDQMDATRALLA 124
>gi|254463718|ref|ZP_05077129.1| ribosome-binding factor A [Rhodobacterales bacterium Y4I]
gi|206684626|gb|EDZ45108.1| ribosome-binding factor A [Rhodobacterales bacterium Y4I]
Length = 131
Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 61/110 (55%), Gaps = 6/110 (5%)
Query: 2 KNK---NPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATV 58
KNK P S+R LRVGE +R L V+ + D ++R I++ EV S DL++AT
Sbjct: 3 KNKFHDGPGPSQRQLRVGELIRRTLSEVLARGDVHDPDLNRMSITVGEVRTSPDLKIATA 62
Query: 59 YISLPLDV-SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSL 107
Y+ LPL + V+ L N +R +G+ L L++ P+LRFR D +
Sbjct: 63 YV-LPLGGKGQEDVLKLLARNKSELRRMVGKKL-GLKFTPDLRFRLDETF 110
>gi|329113265|ref|ZP_08242048.1| Ribosome-binding factor A [Acetobacter pomorum DM001]
gi|326697406|gb|EGE49064.1| Ribosome-binding factor A [Acetobacter pomorum DM001]
Length = 154
Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 63/114 (55%), Gaps = 1/114 (0%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
S+R LRVGEEVR L V F+D + ++++EV +S D R ATV+I+
Sbjct: 27 SQRQLRVGEEVRRVLAEVFARTTFRDPDLVDVALTVTEVRLSPDFRHATVFITRLGRSDV 86
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
++ AL ++R ++ +R R VPEL F+ DT+L + ++ L+ P++
Sbjct: 87 AELLPALKRVAPWLRTQLAHKIRA-RTVPELHFQPDTALDTAMHMDTLLRSPEV 139
>gi|163745464|ref|ZP_02152824.1| ribosome-binding factor A [Oceanibulbus indolifex HEL-45]
gi|161382282|gb|EDQ06691.1| ribosome-binding factor A [Oceanibulbus indolifex HEL-45]
Length = 146
Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 59/100 (59%), Gaps = 3/100 (3%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV-S 67
++R LRVGE VR AL V+ + D ++R I++ EV MS DL++AT Y+ LPL
Sbjct: 16 TQRQLRVGETVRRALSDVLARGDVHDTDLNRLSITVGEVRMSPDLKIATAYV-LPLGGEG 74
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSL 107
D V+ L N +R ++ + L L++ P+LRF+ D +
Sbjct: 75 QDEVLKLLARNKNELRRQVAKKL-TLKFSPDLRFQLDRTF 113
>gi|168333343|ref|ZP_02691627.1| ribosome-binding factor A [Epulopiscium sp. 'N.t. morphotype B']
Length = 116
Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 60/105 (57%), Gaps = 1/105 (0%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
+++ +RV EE++ + +I + +D + ++S++ V + DL+ A ++IS+ D
Sbjct: 3 NQKIIRVNEEIQKEVAEIIRGDSIKDARMKDIMVSVTAVDTTTDLKNAKIFISVLQDNKK 62
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKL 113
D V+ LN + KFIR + R + NLR PE+ F+ D S+ K+
Sbjct: 63 DDVLDVLNGSSKFIRKELARRI-NLRNTPEISFKLDNSIAYGIKM 106
>gi|260432190|ref|ZP_05786161.1| ribosome-binding factor A [Silicibacter lacuscaerulensis ITI-1157]
gi|260416018|gb|EEX09277.1| ribosome-binding factor A [Silicibacter lacuscaerulensis ITI-1157]
Length = 131
Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 61/110 (55%), Gaps = 6/110 (5%)
Query: 2 KNK---NPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATV 58
KNK P S+R LRVGE +R L V+ + D ++R I++ EV S DL++AT
Sbjct: 3 KNKFHDGPGPSQRQLRVGELIRRTLSEVLARGDVHDPDLNRLSITVGEVRTSPDLKIATA 62
Query: 59 YISLPLDV-SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSL 107
Y+ LPL + VI L N +R +G+ + L++ P+LRFR D +
Sbjct: 63 YV-LPLGGKGQETVIELLARNKGELRRMVGKKV-GLKFAPDLRFRLDETF 110
>gi|242242553|ref|ZP_04796998.1| ribosome-binding factor A [Staphylococcus epidermidis W23144]
gi|242233980|gb|EES36292.1| ribosome-binding factor A [Staphylococcus epidermidis W23144]
Length = 127
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 63/109 (57%), Gaps = 5/109 (4%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
MK N+ RA RVGE+++ +M ++ NN+ +D + ++I++V ++ DL A VY+
Sbjct: 6 MKRGEMMNNIRAERVGEQMKQEIMDIV-NNKVKDPRVG--FLTITDVELTNDLSQAKVYL 62
Query: 61 S-LPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
+ L D D AL+ FI+ +G +R LR +PEL F YD S++
Sbjct: 63 TVLGNDKEVDNTFKALHKATGFIKSELGSRMR-LRIIPELTFEYDESIE 110
>gi|254462052|ref|ZP_05075468.1| ribosome-binding factor A [Rhodobacterales bacterium HTCC2083]
gi|206678641|gb|EDZ43128.1| ribosome-binding factor A [Rhodobacteraceae bacterium HTCC2083]
Length = 142
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 64/121 (52%), Gaps = 3/121 (2%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV-S 67
S+R LRVGE +R L ++ + D ++R ++I EV +S DLRVATVY +LPL
Sbjct: 15 SQRQLRVGELIRRGLSEILQRGDVHDADLNRLSVTIGEVRVSPDLRVATVY-ALPLGGEG 73
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALE 127
D VI L N +R I + L L++ P++RFR D + + L + +E
Sbjct: 74 KDDVIGLLAKNKGELRQLINKKL-ALKHSPDMRFRLDETFDKMDETRRLFEQEHVRADIE 132
Query: 128 K 128
+
Sbjct: 133 R 133
>gi|119385523|ref|YP_916579.1| ribosome-binding factor A [Paracoccus denitrificans PD1222]
gi|166219383|sp|A1B5T9|RBFA_PARDP RecName: Full=Ribosome-binding factor A
gi|119375290|gb|ABL70883.1| ribosome-binding factor A [Paracoccus denitrificans PD1222]
Length = 138
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 58/100 (58%), Gaps = 3/100 (3%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV-S 67
S+R LRVGE +R L V+L + D ++R I++ EV S DL+VAT Y+ LPL
Sbjct: 13 SQRQLRVGELIRRTLSDVLLRGDVHDPELNRHSITVGEVRTSPDLKVATAYV-LPLGGHD 71
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSL 107
+ ++AL N +R + +++ L+Y P+LRF D +
Sbjct: 72 AEEALAALRRNAGELRHLVAKAM-TLKYAPQLRFVLDETF 110
>gi|85373520|ref|YP_457582.1| ribosome-binding factor A [Erythrobacter litoralis HTCC2594]
gi|84786603|gb|ABC62785.1| ribosome-binding factor A [Erythrobacter litoralis HTCC2594]
Length = 112
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 55/104 (52%), Gaps = 1/104 (0%)
Query: 19 VRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCN 78
+R L ++ E D +S I+++EV M+ DLR AT Y+ L D ++SAL N
Sbjct: 1 MRHILSELLARQEVHDETVSAANIAVTEVRMTPDLRNATAYVKPLLGKEEDEIVSALRQN 60
Query: 79 IKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
+++ + + L L++ P+L FR D S ++ L+ PK+
Sbjct: 61 TAYLQKEVAKRL-GLKFAPKLMFRPDESFDEADRIEKLLRDPKV 103
>gi|251810701|ref|ZP_04825174.1| ribosome-binding factor A [Staphylococcus epidermidis BCM-HMP0060]
gi|293366766|ref|ZP_06613442.1| ribosome-binding factor A [Staphylococcus epidermidis
M23864:W2(grey)]
gi|251805861|gb|EES58518.1| ribosome-binding factor A [Staphylococcus epidermidis BCM-HMP0060]
gi|291319067|gb|EFE59437.1| ribosome-binding factor A [Staphylococcus epidermidis
M23864:W2(grey)]
Length = 127
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 61/102 (59%), Gaps = 5/102 (4%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDV 66
N+ RA RVGE+++ +M ++ NN+ +D + ++I++V ++ DL A VY++ L D
Sbjct: 13 NNIRAERVGEQMKQEIMDIV-NNKVKDPRVG--FLTITDVELTNDLSQAKVYLTVLGNDK 69
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
D AL+ FI+ +G +R LR +PEL F YD S++
Sbjct: 70 EVDNTFKALHKATGFIKSELGSRMR-LRIIPELTFEYDESIE 110
>gi|258543553|ref|YP_003188986.1| ribosome-binding factor A [Acetobacter pasteurianus IFO 3283-01]
gi|256634631|dbj|BAI00607.1| ribosome-binding factor A [Acetobacter pasteurianus IFO 3283-01]
gi|256637687|dbj|BAI03656.1| ribosome-binding factor A [Acetobacter pasteurianus IFO 3283-03]
gi|256640741|dbj|BAI06703.1| ribosome-binding factor A [Acetobacter pasteurianus IFO 3283-07]
gi|256643796|dbj|BAI09751.1| ribosome-binding factor A [Acetobacter pasteurianus IFO 3283-22]
gi|256646851|dbj|BAI12799.1| ribosome-binding factor A [Acetobacter pasteurianus IFO 3283-26]
gi|256649904|dbj|BAI15845.1| ribosome-binding factor A [Acetobacter pasteurianus IFO 3283-32]
gi|256652894|dbj|BAI18828.1| ribosome-binding factor A [Acetobacter pasteurianus IFO
3283-01-42C]
gi|256655948|dbj|BAI21875.1| ribosome-binding factor A [Acetobacter pasteurianus IFO 3283-12]
Length = 154
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 63/114 (55%), Gaps = 1/114 (0%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
S+R LRVGEEVR L V F+D + ++++EV +S D R ATV+I+
Sbjct: 27 SQRQLRVGEEVRRVLAEVFARTTFRDPDLVDVDLTVTEVRLSPDFRHATVFITRLGRSDV 86
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
++ AL ++R ++ +R R VPEL F+ DT+L + ++ L+ P++
Sbjct: 87 AELLPALKRVAPWLRTQLAHKIR-ARTVPELHFQPDTALDTAMHMDTLLRSPEV 139
>gi|319401440|gb|EFV89650.1| ribosome-binding factor A [Staphylococcus epidermidis FRI909]
gi|329724355|gb|EGG60867.1| ribosome-binding factor A [Staphylococcus epidermidis VCU144]
Length = 116
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 61/102 (59%), Gaps = 5/102 (4%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDV 66
N+ RA RVGE+++ +M ++ NN+ +D + ++I++V ++ DL A VY++ L D
Sbjct: 2 NNIRAERVGEQMKQEIMDIV-NNKVKDPRVG--FLTITDVELTNDLSQAKVYLTVLGNDK 58
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
D AL+ FI+ +G +R LR +PEL F YD S++
Sbjct: 59 EVDNTFKALHKATGFIKSELGSRMR-LRIIPELTFEYDESIE 99
>gi|254510483|ref|ZP_05122550.1| ribosome-binding factor A [Rhodobacteraceae bacterium KLH11]
gi|221534194|gb|EEE37182.1| ribosome-binding factor A [Rhodobacteraceae bacterium KLH11]
Length = 131
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 61/110 (55%), Gaps = 6/110 (5%)
Query: 2 KNK---NPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATV 58
KNK P S+R LRVGE +R L V+ + D ++R I++ EV S DL++AT
Sbjct: 3 KNKFHDGPGPSQRQLRVGELIRRTLSEVLARGDVHDPDLNRMSITVGEVRTSPDLKIATA 62
Query: 59 YISLPLDV-SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSL 107
Y+ LPL + VI L N +R +G+ + L++ P+LRFR D +
Sbjct: 63 YV-LPLGGKGQEDVIELLARNKGELRRMVGKKV-GLKFSPDLRFRLDDTF 110
>gi|27467865|ref|NP_764502.1| ribosome-binding factor A [Staphylococcus epidermidis ATCC 12228]
gi|57866760|ref|YP_188419.1| ribosome-binding factor A [Staphylococcus epidermidis RP62A]
gi|282876298|ref|ZP_06285165.1| ribosome-binding factor A [Staphylococcus epidermidis SK135]
gi|29427695|sp|Q8CPG2|RBFA_STAES RecName: Full=Ribosome-binding factor A
gi|61214666|sp|Q5HPS1|RBFA_STAEQ RecName: Full=Ribosome-binding factor A
gi|27315410|gb|AAO04544.1|AE016747_41 ribosome-binding factor A [Staphylococcus epidermidis ATCC 12228]
gi|57637418|gb|AAW54206.1| ribosome-binding factor A [Staphylococcus epidermidis RP62A]
gi|281295323|gb|EFA87850.1| ribosome-binding factor A [Staphylococcus epidermidis SK135]
gi|329736627|gb|EGG72893.1| ribosome-binding factor A [Staphylococcus epidermidis VCU045]
Length = 116
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 61/102 (59%), Gaps = 5/102 (4%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDV 66
N+ RA RVGE+++ +M ++ NN+ +D + ++I++V ++ DL A VY++ L D
Sbjct: 2 NNIRAERVGEQMKQEIMDIV-NNKVKDPRVG--FLTITDVELTNDLSQAKVYLTVLGNDK 58
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
D AL+ FI+ +G +R LR +PEL F YD S++
Sbjct: 59 EVDNTFKALHKATGFIKSELGSRMR-LRIIPELTFEYDESIE 99
>gi|291166368|gb|EFE28414.1| ribosome-binding factor A [Filifactor alocis ATCC 35896]
Length = 121
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 66/110 (60%), Gaps = 4/110 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLI--SRDVISISEVCMSVDLRVATVYISLPLDVSP 68
R R+ EE+R + ++L E +D I S+ +IS++ V + DL+ A +YIS+ D +P
Sbjct: 5 RTRRISEEIRKVVGNMLLEGEIKDTKIRNSKGLISVTSVEVVRDLKYAYIYISVLGD-NP 63
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ ++ L ++R +GR + +LRY PE+ FR D S+++ +++ ++
Sbjct: 64 ETILDGLKRASGYVRKEVGRQV-DLRYTPEIIFRLDHSIENGVEMSKMIS 112
>gi|294675833|ref|YP_003576448.1| ribosome-binding factor A [Rhodobacter capsulatus SB 1003]
gi|294474653|gb|ADE84041.1| ribosome-binding factor A [Rhodobacter capsulatus SB 1003]
Length = 144
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 62/105 (59%), Gaps = 7/105 (6%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV-- 66
S+R LRVGE +R L V+L + D +++ I++ EV S DL+VATVY++ PL
Sbjct: 13 SQRQLRVGELIRRTLSDVLLRGDVHDPDLNKISITVGEVRTSPDLKVATVYVA-PLGGTL 71
Query: 67 ---SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
S + +++AL + +R + +++ L+Y P+LRFR D +
Sbjct: 72 GGESAEAMLAALRRHSGELRHHVAKAM-TLKYAPDLRFRMDETFD 115
>gi|310658993|ref|YP_003936714.1| 30S ribosome binding factor [Clostridium sticklandii DSM 519]
gi|308825771|emb|CBH21809.1| 30s ribosome binding factor [Clostridium sticklandii]
Length = 120
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 64/109 (58%), Gaps = 4/109 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQD-RLI-SRDVISISEVCMSVDLRVATVYISLPLDVSP 68
R R+GEE++ + ++ + +D R+I SR +ISI+ V + DL+ A +YIS+ L
Sbjct: 5 RTRRIGEEIKKTITELLRDQRIKDIRIIDSRSLISITTVDVVRDLKYAYIYISV-LGNDS 63
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
D+V+ FIR +G+ ++ LRY PEL F+ D S++ ++ L+
Sbjct: 64 DKVLEGFKSASGFIRKELGKDIK-LRYTPELVFKIDDSIERGVNMSKLI 111
>gi|332704830|ref|ZP_08424918.1| Ribosome-binding factor A [Desulfovibrio africanus str. Walvis Bay]
gi|332554979|gb|EGJ52023.1| Ribosome-binding factor A [Desulfovibrio africanus str. Walvis Bay]
Length = 110
Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 65/104 (62%), Gaps = 7/104 (6%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQD-RLISRDVISISEVCMSVDLRVATVYISLPLDV 66
SRR++R+ EE+ L +L E QD RL +++++S V ++ D+ VA V+++ ++
Sbjct: 5 TSRRSVRLSEEIMREL-GNLLAEEVQDPRL---ELVTVSGVRLNADISVAEVFVTYSAEL 60
Query: 67 SP-DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQS 109
P + V AL F+R R+G+ L+ LR VPELRFR+D L++
Sbjct: 61 HPREDVDKALEKAKGFLRTRLGKRLK-LRKVPELRFRFDEFLET 103
>gi|322418691|ref|YP_004197914.1| ribosome-binding factor A [Geobacter sp. M18]
gi|320125078|gb|ADW12638.1| ribosome-binding factor A [Geobacter sp. M18]
Length = 119
Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 63/109 (57%), Gaps = 5/109 (4%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDVSP 68
+R+ +VGEE+ + +++ +D I ++I+ V M+ DLR ATVY ++ D
Sbjct: 3 KRSDKVGEEIHKIISELLIKG-LKDPRIG--FLTITGVKMTPDLRQATVYFTVHGSDEDK 59
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ LN FIR IG++L+ +R+VPE+ F+YDTSL + +++
Sbjct: 60 KASEAGLNSAKGFIRKEIGQALK-MRFVPEVLFKYDTSLDYGQHIESIL 107
>gi|260574496|ref|ZP_05842500.1| ribosome-binding factor A [Rhodobacter sp. SW2]
gi|259023392|gb|EEW26684.1| ribosome-binding factor A [Rhodobacter sp. SW2]
Length = 138
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 61/102 (59%), Gaps = 7/102 (6%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL---D 65
S+R LRVGE +R L ++ E D ++R I++ EV +S DL++AT Y+ +PL D
Sbjct: 11 SQRQLRVGELIRRTLSDLLNRGEIHDPELNRMSITVGEVRLSNDLKIATAYV-MPLGGGD 69
Query: 66 VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSL 107
V+ I+AL N +R RIG+ + L++ P+LRF D +
Sbjct: 70 VAA--AIAALKRNKYDLRHRIGQQM-TLKHTPDLRFLPDETF 108
>gi|163796761|ref|ZP_02190719.1| ribosome-binding factor A [alpha proteobacterium BAL199]
gi|159178015|gb|EDP62562.1| ribosome-binding factor A [alpha proteobacterium BAL199]
Length = 130
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 60/108 (55%), Gaps = 1/108 (0%)
Query: 13 LRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVI 72
+RVGEE+R L ++ D + ++ISEV +S DLR ATV+I+ ++
Sbjct: 1 MRVGEEIRRTLARILERGTLHDPALYHAPVTISEVTVSPDLRNATVWITRLGGGDATDLL 60
Query: 73 SALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
+AL N + G + R ++ L+Y P L+F D++ + +++AL+ P
Sbjct: 61 AALKRNAGRLGGLLARDIK-LKYAPRLQFARDSAFDTSSRIDALLRNP 107
>gi|329736237|gb|EGG72509.1| ribosome-binding factor A [Staphylococcus epidermidis VCU028]
Length = 116
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 61/102 (59%), Gaps = 5/102 (4%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDV 66
N+ RA RVGE+++ +M ++ NN+ +D + ++I++V ++ DL A VY++ L D
Sbjct: 2 NNIRAERVGEQMKQEIMDIV-NNKVKDPRVG--FLTITDVELTNDLSQAKVYLTVLGNDK 58
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
D AL+ FI+ +G +R LR +PEL F YD S++
Sbjct: 59 EVDNTFKALHKATGFIKSGLGSRMR-LRIIPELTFEYDESIE 99
>gi|296114404|ref|ZP_06833058.1| ribosome-binding factor A [Gluconacetobacter hansenii ATCC 23769]
gi|295979165|gb|EFG85889.1| ribosome-binding factor A [Gluconacetobacter hansenii ATCC 23769]
Length = 146
Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 66/119 (55%), Gaps = 1/119 (0%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
S+R LRV EE+R L + EF+D + I+++EV +S DL+ ATV+++
Sbjct: 28 SQRQLRVAEEIRRVLADIFARVEFRDPELVDARITVTEVRISPDLKHATVFVARLGRSDI 87
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALE 127
+ ++ AL F+R R+ +R LR VP+L F+ DT+L ++ L+ P + LE
Sbjct: 88 EALLPALKRVSSFLRSRLSHMVR-LRGVPDLHFQPDTALDYAMHVDDLLRDPAVARDLE 145
>gi|99079927|ref|YP_612081.1| ribosome-binding factor A [Ruegeria sp. TM1040]
gi|259417241|ref|ZP_05741160.1| ribosome-binding factor A [Silicibacter sp. TrichCH4B]
gi|122398485|sp|Q1GKJ7|RBFA_SILST RecName: Full=Ribosome-binding factor A
gi|99036207|gb|ABF62819.1| ribosome-binding factor A [Ruegeria sp. TM1040]
gi|259346147|gb|EEW57961.1| ribosome-binding factor A [Silicibacter sp. TrichCH4B]
Length = 131
Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 60/110 (54%), Gaps = 6/110 (5%)
Query: 2 KNK---NPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATV 58
KNK P S+R LRVGE +R L V+ + D ++R I++ EV S DL++AT
Sbjct: 3 KNKFHDGPGPSQRQLRVGEVIRRTLSEVLARGDIHDPELNRLSITVGEVRTSPDLKIATA 62
Query: 59 YISLPLDV-SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSL 107
Y+ LPL + V+ L N +R IG+ L++ P+LRF+ D +
Sbjct: 63 YV-LPLGGKGQEDVLQLLARNKSELRRAIGKKT-GLKFTPDLRFQIDETF 110
>gi|126740777|ref|ZP_01756462.1| ribosome-binding factor A [Roseobacter sp. SK209-2-6]
gi|126718073|gb|EBA14790.1| ribosome-binding factor A [Roseobacter sp. SK209-2-6]
Length = 131
Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 69/122 (56%), Gaps = 9/122 (7%)
Query: 2 KNKNPKN---SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATV 58
KN +P+ S+R LRVGE +R L V++ + D ++R I++ EV ++ DLR+AT
Sbjct: 3 KNSSPEGRGPSQRQLRVGELIRRTLSEVLMRGDLHDPELNRMSITVGEVRVTPDLRIATA 62
Query: 59 YISLPLDV-SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
Y+ LPL + ++ L N +R G+ L +++ P+LRF+ D +Y +++A
Sbjct: 63 YV-LPLGGKGQEDLLKLLARNKGELRRIAGKKL-GMKFAPDLRFQLDL---TYDQMDATR 117
Query: 118 CL 119
+
Sbjct: 118 AM 119
>gi|77464688|ref|YP_354192.1| ribosome-binding factor A [Rhodobacter sphaeroides 2.4.1]
gi|123590863|sp|Q3IYU3|RBFA_RHOS4 RecName: Full=Ribosome-binding factor A
gi|77389106|gb|ABA80291.1| ribosome-binding factor A [Rhodobacter sphaeroides 2.4.1]
Length = 140
Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 60/102 (58%), Gaps = 7/102 (6%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL---D 65
S+R LRVGE +R L V+ E D ++R I++ EV S DL+VATV++ +PL D
Sbjct: 15 SQRQLRVGELIRRTLADVLNRGEIHDPELNRLSITVGEVRCSPDLKVATVHV-MPLGGKD 73
Query: 66 VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSL 107
V + IS L+ + +R I R + L+Y P+LRFR D +
Sbjct: 74 V--EEAISLLSKHRGELRHHITRQM-TLKYAPDLRFRPDETF 112
>gi|149925036|ref|ZP_01913354.1| ribosome-binding factor A [Plesiocystis pacifica SIR-1]
gi|149814100|gb|EDM73726.1| ribosome-binding factor A [Plesiocystis pacifica SIR-1]
Length = 153
Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 63/112 (56%), Gaps = 3/112 (2%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQD-RLISRDVISISEVCMSVDLRVATVYIS-LPLDV 66
SRR RV E +R + ++L E +D RL +S++ V +S DL VAT+Y+ L +
Sbjct: 2 SRRRQRVEELLRREMAQMLLRGELRDPRLQPASAVSVTGVSVSPDLSVATIYVDVLTEAL 61
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ V++AL IR ++G + LR PELRF +D S++ ++ A++
Sbjct: 62 RLESVLAALRAGGGAIRRKLGERV-QLRRTPELRFHHDDSIERGNRVEAILT 112
>gi|167464644|ref|ZP_02329733.1| ribosome-binding factor A [Paenibacillus larvae subsp. larvae
BRL-230010]
Length = 118
Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 64/108 (59%), Gaps = 5/108 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
R RVGE+++ L ++ +E +D I ++I+ V ++ DL +A VY+S L D +
Sbjct: 5 RVGRVGEQIKKELSQIV-QSELKDPRIG--FLTITGVDVTNDLSLAKVYLSVLGSDEEKE 61
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ AL +IR +G+ +R LR VPEL+F++DTS+ ++ +L+
Sbjct: 62 ATLKALGVASGYIRSELGKRIR-LRKVPELQFKFDTSIDYGSRIESLL 108
>gi|163739812|ref|ZP_02147219.1| ribosome-binding factor A [Phaeobacter gallaeciensis BS107]
gi|163744093|ref|ZP_02151459.1| ribosome-binding factor A [Phaeobacter gallaeciensis 2.10]
gi|161382640|gb|EDQ07043.1| ribosome-binding factor A [Phaeobacter gallaeciensis 2.10]
gi|161386846|gb|EDQ11208.1| ribosome-binding factor A [Phaeobacter gallaeciensis BS107]
Length = 131
Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 56/100 (56%), Gaps = 3/100 (3%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV-S 67
S+R LRVGE +R AL + + D ++R I++ EV S DLR+AT Y+ LPL
Sbjct: 13 SQRQLRVGELIRRALSEIFARGDLHDPDLNRLSITVGEVRTSPDLRIATAYV-LPLGGKG 71
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSL 107
+ + + N +R IG+ L L++ PELRF+ D +
Sbjct: 72 QEDTLKLMARNKGELRRMIGKKL-ALKFTPELRFQLDDTF 110
>gi|253701578|ref|YP_003022767.1| ribosome-binding factor A [Geobacter sp. M21]
gi|259552004|sp|C6E2P9|RBFA_GEOSM RecName: Full=Ribosome-binding factor A
gi|251776428|gb|ACT19009.1| ribosome-binding factor A [Geobacter sp. M21]
Length = 119
Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 63/109 (57%), Gaps = 5/109 (4%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDVSP 68
+R+ +VGEE+ + +++ +D I ++I+ V M+ DLR ATVY ++ D
Sbjct: 3 KRSDKVGEEIHKIISELLIKG-LKDPRIG--FLTITGVKMTPDLRQATVYFTVHGSDEDK 59
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ LN +IR IG++L+ +R+VPE+ F+YDTSL + +++
Sbjct: 60 KNSEAGLNSAKGYIRKEIGQALK-MRFVPEVLFKYDTSLDYGQHIESIL 107
>gi|154254060|ref|YP_001414884.1| ribosome-binding factor A [Parvibaculum lavamentivorans DS-1]
gi|171769695|sp|A7HZ94|RBFA_PARL1 RecName: Full=Ribosome-binding factor A
gi|154158010|gb|ABS65227.1| ribosome-binding factor A [Parvibaculum lavamentivorans DS-1]
Length = 140
Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 64/115 (55%), Gaps = 3/115 (2%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
S+R LR GE +R AL V+ QD + S++EV +S DLR AT +++ PL
Sbjct: 17 SQRQLRAGELIRRALSDVVTRGTIQDPDLIERSFSVTEVRVSPDLRHATCFVA-PLGKGD 75
Query: 69 DRVISALNCNIK-FIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
++A ++ ++RG++ + + +Y+P+L F DTS +++ L+ PK+
Sbjct: 76 AAALAAALTRVRGYLRGQLSKEV-TFKYMPDLTFEPDTSFDKAEQIDRLLHSPKV 129
>gi|322382345|ref|ZP_08056252.1| ribosome-binding factor A-like protein [Paenibacillus larvae subsp.
larvae B-3650]
gi|321153698|gb|EFX46073.1| ribosome-binding factor A-like protein [Paenibacillus larvae subsp.
larvae B-3650]
Length = 113
Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 63/105 (60%), Gaps = 5/105 (4%)
Query: 14 RVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPDRVI 72
RVGE+++ L ++ +E +D I ++I+ V ++ DL +A VY+S L D + +
Sbjct: 3 RVGEQIKKELSQIV-QSELKDPRIG--FLTITGVDVTNDLSLAKVYLSVLGSDEEKEATL 59
Query: 73 SALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
AL +IR +G+ +R LR VPEL+F++DTS+ ++ +L+
Sbjct: 60 KALGVASGYIRSELGKRIR-LRKVPELQFKFDTSIDYGSRIESLL 103
>gi|319892288|ref|YP_004149163.1| Ribosome-binding factor A [Staphylococcus pseudintermedius
HKU10-03]
gi|317161984|gb|ADV05527.1| Ribosome-binding factor A [Staphylococcus pseudintermedius
HKU10-03]
gi|323464615|gb|ADX76768.1| ribosome-binding factor A [Staphylococcus pseudintermedius ED99]
Length = 114
Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 59/99 (59%), Gaps = 5/99 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
RA RVGE+++ LM +I NN+ +D + ++I++V + DL +A VY++ L D +
Sbjct: 4 RAERVGEQMKKELMDII-NNKLKDPRVG--FLTITDVQPTNDLSLAKVYLTVLGSDKERE 60
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
L FI+ IG+ +R LR VP+L+F YD S++
Sbjct: 61 NTFKGLEKAKGFIKSEIGQRMR-LRIVPDLQFEYDESIE 98
>gi|325290359|ref|YP_004266540.1| ribosome-binding factor A [Syntrophobotulus glycolicus DSM 8271]
gi|324965760|gb|ADY56539.1| ribosome-binding factor A [Syntrophobotulus glycolicus DSM 8271]
Length = 124
Score = 57.0 bits (136), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 65/111 (58%), Gaps = 5/111 (4%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDV 66
R++R+ E ++ + +IL E +D I I++++V ++ DLR A +Y+S + +
Sbjct: 2 GKHRSVRLAETIKEEVARIILE-EIKDPRIG--FITLTDVEVAEDLRYAKLYVSIMGSEE 58
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ ALN F+R +G+++R LRYVPE+ F+YD S++ ++ L+
Sbjct: 59 EVKNSLEALNRASGFVRSELGKTVR-LRYVPEISFKYDQSIEQGAHISKLL 108
>gi|296132889|ref|YP_003640136.1| ribosome-binding factor A [Thermincola sp. JR]
gi|296031467|gb|ADG82235.1| ribosome-binding factor A [Thermincola potens JR]
Length = 120
Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 60/111 (54%), Gaps = 5/111 (4%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDV 66
+ RA RV E ++ + +L E +D I ++ EVC DLR A +YIS+ D
Sbjct: 2 SGHRASRVAEAIKKEVTQ-MLGGEIKDPRIGFVTVTGVEVC--PDLRHARIYISVYGSDE 58
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ + ALN F+R +G+ +R LRY PE+ FR+D S++ ++ L+
Sbjct: 59 EKAQTLQALNKAKGFVRSELGKRIR-LRYTPEVEFRFDESIERGARIMELL 108
>gi|255524227|ref|ZP_05391186.1| ribosome-binding factor A [Clostridium carboxidivorans P7]
gi|296185348|ref|ZP_06853758.1| ribosome-binding factor A [Clostridium carboxidivorans P7]
gi|255512052|gb|EET88333.1| ribosome-binding factor A [Clostridium carboxidivorans P7]
gi|296050182|gb|EFG89606.1| ribosome-binding factor A [Clostridium carboxidivorans P7]
Length = 121
Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 62/108 (57%), Gaps = 4/108 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD-VSPD 69
R+ R+ EE++ + +I N+ RL + +IS+++V ++ DLR A VY+S+ D S +
Sbjct: 5 RSGRINEEMKREISTIIQNDIKDPRLSA--MISVTKVDVTKDLRYAKVYVSIFGDEESKN 62
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
AL + FIR IG + NLRY PE+ D +++ ++AL+
Sbjct: 63 STFEALKGSAGFIRREIGHKI-NLRYTPEILIELDNTIEQGMHIDALL 109
>gi|206978440|ref|ZP_03239307.1| ribosome-binding factor A [Bacillus cereus H3081.97]
gi|217961231|ref|YP_002339799.1| ribosome-binding factor A [Bacillus cereus AH187]
gi|229140452|ref|ZP_04269007.1| Ribosome-binding factor A [Bacillus cereus BDRD-ST26]
gi|226736638|sp|B7HLE4|RBFA_BACC7 RecName: Full=Ribosome-binding factor A
gi|206743355|gb|EDZ54795.1| ribosome-binding factor A [Bacillus cereus H3081.97]
gi|217067043|gb|ACJ81293.1| ribosome-binding factor A [Bacillus cereus AH187]
gi|228643013|gb|EEK99289.1| Ribosome-binding factor A [Bacillus cereus BDRD-ST26]
Length = 118
Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 63/108 (58%), Gaps = 5/108 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
RA RVGE+++ L I++ + +D + +++++V +S DL++ATVYIS L + D
Sbjct: 4 RANRVGEQMKKEL-GDIISRKIKDPRVG--FVTVTDVQVSGDLQIATVYISVLGDEEQKD 60
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ L FIR IG+ +R LR PE+ F +D S+ +++ L+
Sbjct: 61 STLKGLAKAKGFIRSEIGQRIR-LRKTPEISFEFDESIGYGHRIDTLL 107
>gi|294500895|ref|YP_003564595.1| ribosome-binding factor A [Bacillus megaterium QM B1551]
gi|295706241|ref|YP_003599316.1| ribosome-binding factor A [Bacillus megaterium DSM 319]
gi|294350832|gb|ADE71161.1| ribosome-binding factor A [Bacillus megaterium QM B1551]
gi|294803900|gb|ADF40966.1| ribosome-binding factor A [Bacillus megaterium DSM 319]
Length = 121
Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 61/108 (56%), Gaps = 5/108 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP-D 69
RA RVGE+++ M ILN + +D I +++++V +S DL+ A VYIS+ D +
Sbjct: 4 RATRVGEQMKKE-MGEILNRKIKDPRIG--FVTVTDVQVSGDLQQAKVYISVLGDAEQRE 60
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ L FIR IG+ +R LR PE+ F +D S+ ++ +L+
Sbjct: 61 NTLKGLAKAKGFIRSEIGQRIR-LRKTPEITFEFDESIDYGNRIESLL 107
>gi|289423163|ref|ZP_06424978.1| ribosome-binding factor A [Peptostreptococcus anaerobius 653-L]
gi|289156494|gb|EFD05144.1| ribosome-binding factor A [Peptostreptococcus anaerobius 653-L]
Length = 115
Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 64/109 (58%), Gaps = 4/109 (3%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
S R R+ EEV+ A+ +++N R+ S +IS+++V ++ DLR A VYIS+ L
Sbjct: 3 SNRIRRISEEVKKAISVMLINGIKDPRITS--MISVTDVEVTNDLRYAFVYISI-LGGDK 59
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ + LN +IR +GR ++ LRY PE+ F+ D S++ ++ L+
Sbjct: 60 EESLEGLNSARGYIRREVGRQVK-LRYAPEIIFKIDDSIERGMYMDELI 107
>gi|298528718|ref|ZP_07016122.1| ribosome-binding factor A [Desulfonatronospira thiodismutans
ASO3-1]
gi|298512370|gb|EFI36272.1| ribosome-binding factor A [Desulfonatronospira thiodismutans
ASO3-1]
Length = 109
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 59/104 (56%), Gaps = 5/104 (4%)
Query: 5 NPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL 64
P SRRA R+ + + L +I+ RL ++++I+ V M+ DL +A V +
Sbjct: 2 QPATSRRATRMADSIMRELGRIIVEEARDPRL---NLVTITGVLMNKDLSIARVMYTHIQ 58
Query: 65 DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
SP+ + AL F+R +G++L+ +RYVPELRF +DT LQ
Sbjct: 59 GPSPE-LEKALGSARGFLRSSLGQNLK-MRYVPELRFEWDTYLQ 100
>gi|332559581|ref|ZP_08413903.1| ribosome-binding factor A [Rhodobacter sphaeroides WS8N]
gi|332277293|gb|EGJ22608.1| ribosome-binding factor A [Rhodobacter sphaeroides WS8N]
Length = 140
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/102 (39%), Positives = 60/102 (58%), Gaps = 7/102 (6%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL---D 65
S+R LRVGE +R L V+ E D ++R I++ EV S DL+VATV++ +PL D
Sbjct: 15 SQRQLRVGELIRRTLADVLNRGEIHDPELNRLSITVGEVRCSPDLKVATVHV-MPLGGKD 73
Query: 66 VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSL 107
V + I+ L+ + +R I R + L+Y P+LRFR D +
Sbjct: 74 V--EEAIALLSKHRGELRHHITRQM-TLKYAPDLRFRPDETF 112
>gi|70726645|ref|YP_253559.1| ribosome-binding factor A [Staphylococcus haemolyticus JCSC1435]
gi|123660054|sp|Q4L5X2|RBFA_STAHJ RecName: Full=Ribosome-binding factor A
gi|68447369|dbj|BAE04953.1| ribosome-binding factor A [Staphylococcus haemolyticus JCSC1435]
Length = 116
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 65/111 (58%), Gaps = 5/111 (4%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDV 66
N+ RA RVGE+++ +M ++ NN+ +D + I+I++V ++ DL A VY++ L +
Sbjct: 2 NNMRAERVGEQMKKEIMDIV-NNKVKDPRVG--FITITDVDLTNDLSQAKVYLTVLGSEK 58
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ AL+ FI+ +G +R LR VPEL F YD S++ K+ ++
Sbjct: 59 EVNDTFKALDKAKGFIKSELGSRMR-LRIVPELFFEYDESIEYGNKIEKMI 108
>gi|51892661|ref|YP_075352.1| ribosome-binding factor A [Symbiobacterium thermophilum IAM 14863]
gi|61214894|sp|Q67P85|RBFA_SYMTH RecName: Full=Ribosome-binding factor A
gi|51856350|dbj|BAD40508.1| ribosome-binding factor A [Symbiobacterium thermophilum IAM 14863]
Length = 125
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 61/109 (55%), Gaps = 5/109 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
RA+RVGE++R L +L +E +D I +SI +V +S D+R A +Y+S L D
Sbjct: 6 RAIRVGEQMREELAQ-LLRDEVKDPRIG--FVSIVKVEVSRDIRHAKIYVSVLGNDQQKK 62
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
++ L F+R + + L+ LRY+PEL F D S++ ++ L+
Sbjct: 63 ETMAGLASATGFLRSELAKRLQ-LRYMPELHFALDESIEHGQRIAQLLV 110
>gi|260427176|ref|ZP_05781155.1| ribosome-binding factor A [Citreicella sp. SE45]
gi|260421668|gb|EEX14919.1| ribosome-binding factor A [Citreicella sp. SE45]
Length = 132
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 63/121 (52%), Gaps = 3/121 (2%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-DVS 67
S+R LRVGE +R L V+ + D ++R I++ EV +S DL+VAT Y+ +PL +
Sbjct: 13 SQRQLRVGELIRRTLSDVLTRGDIHDPELNRLSITVGEVVVSPDLKVATAYV-VPLGGGA 71
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALE 127
D + L N +R + + L L++ PELRF+ D + + L + LE
Sbjct: 72 SDEMFDLLKRNRSELRRAVSKGL-TLKFAPELRFKLDETFDRLDETRRLFAQDAVRRDLE 130
Query: 128 K 128
+
Sbjct: 131 E 131
>gi|221640602|ref|YP_002526864.1| ribosome-binding factor A [Rhodobacter sphaeroides KD131]
gi|254789761|sp|B9KP41|RBFA_RHOSK RecName: Full=Ribosome-binding factor A
gi|221161383|gb|ACM02363.1| Ribosome-binding factor A [Rhodobacter sphaeroides KD131]
Length = 137
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 58/100 (58%), Gaps = 3/100 (3%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
S+R LRVGE +R L V+ E D ++R I++ EV S DL+VATV++ +PL
Sbjct: 12 SQRQLRVGELIRRTLADVLNRGEIHDPELNRLSITVGEVRCSPDLKVATVHV-MPLGGKD 70
Query: 69 -DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSL 107
+ I+ L+ + +R I R + L+Y P+LRFR D +
Sbjct: 71 VEEAIALLSKHRGELRHHITRQM-TLKYAPDLRFRPDETF 109
>gi|146278956|ref|YP_001169115.1| ribosome-binding factor A [Rhodobacter sphaeroides ATCC 17025]
gi|145557197|gb|ABP71810.1| ribosome-binding factor A [Rhodobacter sphaeroides ATCC 17025]
Length = 165
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/102 (39%), Positives = 60/102 (58%), Gaps = 7/102 (6%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL---D 65
S+R LRVGE +R L V+ E D ++R I++ EV S DL+VATV++ +PL D
Sbjct: 40 SQRQLRVGELIRRTLADVLNRGEIHDPDLNRMSITVGEVRCSPDLKVATVHV-MPLGGKD 98
Query: 66 VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSL 107
V + I+ L+ + +R I R + L+Y P+LRFR D +
Sbjct: 99 V--EEAIALLSKHRGELRHHITRQM-TLKYAPDLRFRPDETF 137
>gi|326204067|ref|ZP_08193928.1| ribosome-binding factor A [Clostridium papyrosolvens DSM 2782]
gi|325985834|gb|EGD46669.1| ribosome-binding factor A [Clostridium papyrosolvens DSM 2782]
Length = 117
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 59/108 (54%), Gaps = 4/108 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
R +R+ EEV+ + +I N+ RL S ++SI ++ DLR A V++S L +
Sbjct: 4 RIIRISEEVKKEISNIIQNDIKDPRLPS--MVSIVSCNVTKDLRYAKVFVSVLGNEEQKK 61
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
ISAL FIR +G ++ LRY PE+ F DTS++ +N L+
Sbjct: 62 NAISALKSAAGFIRRELGHRVQ-LRYTPEIHFELDTSIEHGIHINKLL 108
>gi|323697465|ref|ZP_08109377.1| ribosome-binding factor A [Desulfovibrio sp. ND132]
gi|323457397|gb|EGB13262.1| ribosome-binding factor A [Desulfovibrio desulfuricans ND132]
Length = 113
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 61/102 (59%), Gaps = 5/102 (4%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS 67
SRRA+R+G+++ + +++ RL +++++S V M+ +LR+A ++ ++ D
Sbjct: 5 TSRRAVRMGDQIMREIGTLLVEEAADPRL---NLVTLSGVRMNSNLRIAEIFYTVSGDAE 61
Query: 68 PDR-VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
R V L F+R R+GR L+ L+Y PELRF++D L+
Sbjct: 62 HRREVQEGLEKATGFLRSRLGRILK-LQYTPELRFQFDEFLE 102
>gi|172046045|sp|A4WWP6|RBFA_RHOS5 RecName: Full=Ribosome-binding factor A
Length = 140
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 58/100 (58%), Gaps = 3/100 (3%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
S+R LRVGE +R L V+ E D ++R I++ EV S DL+VATV++ +PL
Sbjct: 15 SQRQLRVGELIRRTLADVLNRGEIHDPDLNRMSITVGEVRCSPDLKVATVHV-MPLGGKD 73
Query: 69 -DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSL 107
+ I+ L+ + +R I R + L+Y P+LRFR D +
Sbjct: 74 VEEAIALLSKHRGELRHHITRQM-TLKYAPDLRFRPDETF 112
>gi|126736599|ref|ZP_01752339.1| ribosome-binding factor A [Roseobacter sp. CCS2]
gi|126713912|gb|EBA10783.1| ribosome-binding factor A [Roseobacter sp. CCS2]
Length = 131
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 61/118 (51%), Gaps = 4/118 (3%)
Query: 3 NKNPKN-SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS 61
N++ K ++R LRVGE +R L V+ + D ++R I++ EV M+ DLR+AT ++
Sbjct: 6 NRDGKAPTQRMLRVGEVIRRTLSEVLQRGDVHDDELARMSITVGEVRMTSDLRIATAFV- 64
Query: 62 LPLDV-SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
LPL + AL N IR + + +++ PELRF D + AL+
Sbjct: 65 LPLGGHGKQEALEALRRNRHEIRHLVVKG-GTMKFAPELRFEIDGTFDQIDATRALLA 121
>gi|197117692|ref|YP_002138119.1| ribosome-binding factor A [Geobacter bemidjiensis Bem]
gi|226723601|sp|B5EI59|RBFA_GEOBB RecName: Full=Ribosome-binding factor A
gi|197087052|gb|ACH38323.1| ribosome-binding factor A [Geobacter bemidjiensis Bem]
Length = 119
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 63/109 (57%), Gaps = 5/109 (4%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDVSP 68
+R+ +VGE++ + +++ +D I ++I+ V M+ DLR ATVY ++ D
Sbjct: 3 KRSDKVGEQIHKIISELLIKG-LKDPRIG--FLTITGVKMTPDLRQATVYFTVHGSDEDK 59
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ LN +IR IG++L+ +R+VPE+ F+YDTSL + +++
Sbjct: 60 KNSEAGLNSAKGYIRKEIGQALK-MRFVPEVLFKYDTSLDYGQHIESIL 107
>gi|126463528|ref|YP_001044642.1| ribosome-binding factor A [Rhodobacter sphaeroides ATCC 17029]
gi|171855226|sp|A3PNF4|RBFA_RHOS1 RecName: Full=Ribosome-binding factor A
gi|126105192|gb|ABN77870.1| ribosome-binding factor A [Rhodobacter sphaeroides ATCC 17029]
Length = 137
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 58/100 (58%), Gaps = 3/100 (3%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
S+R LRVGE +R L V+ E D ++R I++ EV S DL+VATV++ +PL
Sbjct: 12 SQRQLRVGELIRRTLADVLNRGEIHDPELNRLSITVGEVRCSPDLKVATVHV-MPLGGKN 70
Query: 69 -DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSL 107
+ I+ L+ + +R I R + L+Y P+LRFR D +
Sbjct: 71 VEEAIALLSKHRGELRHHITRQM-TLKYAPDLRFRPDETF 109
>gi|159045581|ref|YP_001534375.1| ribosome-binding factor A [Dinoroseobacter shibae DFL 12]
gi|189039539|sp|A8LL25|RBFA_DINSH RecName: Full=Ribosome-binding factor A
gi|157913341|gb|ABV94774.1| ribosome-binding factor A [Dinoroseobacter shibae DFL 12]
Length = 135
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 62/121 (51%), Gaps = 3/121 (2%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV-S 67
S+R LRVGE +R L V+ + D ++R I++ EV S DL+VAT Y+ LPL
Sbjct: 13 SQRQLRVGELIRRTLSSVLNQGDIHDPDLNRMSITVGEVRTSPDLKVATAYV-LPLGGHG 71
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALE 127
+ AL N +R + + L L++ PELRF+ D + + L+ + L+
Sbjct: 72 AQDALDALRRNRHELRRAVSKEL-TLKFSPELRFQIDETFDRMDETRRLLSQDHVRQDLD 130
Query: 128 K 128
K
Sbjct: 131 K 131
>gi|126698909|ref|YP_001087806.1| ribosome-binding factor A [Clostridium difficile 630]
gi|255100330|ref|ZP_05329307.1| ribosome-binding factor A [Clostridium difficile QCD-63q42]
gi|255306268|ref|ZP_05350440.1| ribosome-binding factor A [Clostridium difficile ATCC 43255]
gi|123174598|sp|Q18BH6|RBFA_CLOD6 RecName: Full=Ribosome-binding factor A
gi|115250346|emb|CAJ68168.1| Ribosome-binding factor A [Clostridium difficile]
Length = 126
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 65/107 (60%), Gaps = 4/107 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
R R+ EE+R + +++N R+ S ++S+++V ++ DLR A VY+S+ L +
Sbjct: 6 RTRRIAEEIRKVVSTMLINGVKDPRITS--MVSVTDVEVTNDLRYAYVYVSI-LGGDEES 62
Query: 71 VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
++ L +IR +G++++ LRY+PE+ F+ D S++ +++L+
Sbjct: 63 TLTGLKSAGGYIRREVGKNIK-LRYIPEIVFKLDDSIEKGMYMDSLI 108
>gi|147677605|ref|YP_001211820.1| ribosome-binding factor A [Pelotomaculum thermopropionicum SI]
gi|189039550|sp|A5D2S1|RBFA_PELTS RecName: Full=Ribosome-binding factor A
gi|146273702|dbj|BAF59451.1| ribosome-binding factor A [Pelotomaculum thermopropionicum SI]
Length = 119
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 62/112 (55%), Gaps = 9/112 (8%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
S R+ RV E ++ + +L NE +D I ++I+ V +S DLR A +Y S+ SP
Sbjct: 2 SFRSERVAEAIKKEVSD-MLRNELKDPRIG--FVTITSVEVSKDLRYANIYASVF--GSP 56
Query: 69 D---RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
D I AL FIRG +G+ +R LRY PE+ F+ D S+ ++ ALM
Sbjct: 57 DDQKETIEALKKAQGFIRGELGKRIR-LRYTPEITFKLDQSIGRGSRVLALM 107
>gi|325276166|ref|ZP_08141971.1| ribosome-binding factor A [Pseudomonas sp. TJI-51]
gi|324098703|gb|EGB96744.1| ribosome-binding factor A [Pseudomonas sp. TJI-51]
Length = 132
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 66/114 (57%), Gaps = 7/114 (6%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
K R R+G++++ L +I E +D + +++I+ V +S DL A V+I++ +
Sbjct: 3 KEYSRTQRIGDQMQRELAELI-RREVKDPRVG--LVTITAVDVSRDLGHAKVFITVMGEE 59
Query: 67 SPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+PD V + ALN F+R +GRS++ LR VP+L F +D S+ L+AL+
Sbjct: 60 TPDAVQQSLKALNSAASFLRLHLGRSMQ-LRSVPQLHFHFDESVSRGVHLSALI 112
>gi|148267760|ref|YP_001246703.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus JH9]
gi|151221391|ref|YP_001332213.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus str.
Newman]
gi|253731889|ref|ZP_04866054.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|253733492|ref|ZP_04867657.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
TCH130]
gi|257425324|ref|ZP_05601749.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
55/2053]
gi|257427985|ref|ZP_05604383.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
65-1322]
gi|257430618|ref|ZP_05607000.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
68-397]
gi|257433378|ref|ZP_05609736.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
E1410]
gi|257436220|ref|ZP_05612267.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
M876]
gi|257795674|ref|ZP_05644653.1| ribosome-binding factor A [Staphylococcus aureus A9781]
gi|258416077|ref|ZP_05682345.1| ribosome-binding factor A [Staphylococcus aureus A9763]
gi|258421660|ref|ZP_05684584.1| ribosome-binding factor A [Staphylococcus aureus A9719]
gi|258423889|ref|ZP_05686774.1| ribosome-binding factor A [Staphylococcus aureus A9635]
gi|258434816|ref|ZP_05688890.1| ribosome-binding factor A [Staphylococcus aureus A9299]
gi|258444608|ref|ZP_05692937.1| ribosome-binding factor A [Staphylococcus aureus A8115]
gi|258447559|ref|ZP_05695703.1| ribosome-binding factor A [Staphylococcus aureus A6300]
gi|258449401|ref|ZP_05697504.1| ribosome-binding factor A [Staphylococcus aureus A6224]
gi|258452569|ref|ZP_05700575.1| ribosome-binding factor A [Staphylococcus aureus A5948]
gi|258454780|ref|ZP_05702744.1| ribosome-binding factor A [Staphylococcus aureus A5937]
gi|282892758|ref|ZP_06300993.1| ribosome-binding factor A [Staphylococcus aureus A8117]
gi|282903825|ref|ZP_06311713.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
C160]
gi|282905588|ref|ZP_06313443.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
Btn1260]
gi|282908563|ref|ZP_06316393.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
WW2703/97]
gi|282910842|ref|ZP_06318645.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
WBG10049]
gi|282914047|ref|ZP_06321834.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
M899]
gi|282918969|ref|ZP_06326704.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
C427]
gi|282920514|ref|ZP_06328235.1| ribosome-binding factor A [Staphylococcus aureus A9765]
gi|282924092|ref|ZP_06331768.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
C101]
gi|282927612|ref|ZP_06335228.1| ribosome-binding factor A [Staphylococcus aureus A10102]
gi|283958013|ref|ZP_06375464.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
A017934/97]
gi|293501079|ref|ZP_06666930.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
58-424]
gi|293510041|ref|ZP_06668749.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
M809]
gi|297208084|ref|ZP_06924515.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus ATCC
51811]
gi|297591285|ref|ZP_06949923.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus MN8]
gi|300912165|ref|ZP_07129608.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
TCH70]
gi|304381166|ref|ZP_07363819.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus ATCC
BAA-39]
gi|147740829|gb|ABQ49127.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus JH9]
gi|150374191|dbj|BAF67451.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus str.
Newman]
gi|253724299|gb|EES93028.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|253728546|gb|EES97275.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
TCH130]
gi|257271781|gb|EEV03919.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
55/2053]
gi|257274826|gb|EEV06313.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
65-1322]
gi|257278746|gb|EEV09365.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
68-397]
gi|257281471|gb|EEV11608.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
E1410]
gi|257284502|gb|EEV14622.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
M876]
gi|257789646|gb|EEV27986.1| ribosome-binding factor A [Staphylococcus aureus A9781]
gi|257839225|gb|EEV63701.1| ribosome-binding factor A [Staphylococcus aureus A9763]
gi|257842346|gb|EEV66771.1| ribosome-binding factor A [Staphylococcus aureus A9719]
gi|257845918|gb|EEV69947.1| ribosome-binding factor A [Staphylococcus aureus A9635]
gi|257849177|gb|EEV73159.1| ribosome-binding factor A [Staphylococcus aureus A9299]
gi|257850101|gb|EEV74054.1| ribosome-binding factor A [Staphylococcus aureus A8115]
gi|257853750|gb|EEV76709.1| ribosome-binding factor A [Staphylococcus aureus A6300]
gi|257857389|gb|EEV80287.1| ribosome-binding factor A [Staphylococcus aureus A6224]
gi|257859787|gb|EEV82629.1| ribosome-binding factor A [Staphylococcus aureus A5948]
gi|257863163|gb|EEV85927.1| ribosome-binding factor A [Staphylococcus aureus A5937]
gi|269940761|emb|CBI49143.1| putative ribosome-binding factor A [Staphylococcus aureus subsp.
aureus TW20]
gi|282314064|gb|EFB44456.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
C101]
gi|282316779|gb|EFB47153.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
C427]
gi|282322115|gb|EFB52439.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
M899]
gi|282325447|gb|EFB55756.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
WBG10049]
gi|282327625|gb|EFB57908.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
WW2703/97]
gi|282330880|gb|EFB60394.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
Btn1260]
gi|282590615|gb|EFB95692.1| ribosome-binding factor A [Staphylococcus aureus A10102]
gi|282594176|gb|EFB99163.1| ribosome-binding factor A [Staphylococcus aureus A9765]
gi|282595443|gb|EFC00407.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
C160]
gi|282764755|gb|EFC04880.1| ribosome-binding factor A [Staphylococcus aureus A8117]
gi|283470485|emb|CAQ49696.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
ST398]
gi|283790162|gb|EFC28979.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
A017934/97]
gi|291096084|gb|EFE26345.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
58-424]
gi|291466985|gb|EFF09503.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
M809]
gi|296887327|gb|EFH26229.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus ATCC
51811]
gi|297576171|gb|EFH94887.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus MN8]
gi|300886411|gb|EFK81613.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
TCH70]
gi|302751093|gb|ADL65270.1| ribosome-binding factor A (P15B PROTEIN) [Staphylococcus aureus
subsp. aureus str. JKD6008]
gi|304340149|gb|EFM06090.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus ATCC
BAA-39]
gi|312438350|gb|ADQ77421.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
TCH60]
gi|320140913|gb|EFW32760.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
MRSA131]
gi|320144371|gb|EFW36137.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
MRSA177]
gi|323441050|gb|EGA98757.1| ribosome-binding factor A [Staphylococcus aureus O11]
gi|323443919|gb|EGB01530.1| ribosome-binding factor A [Staphylococcus aureus O46]
gi|329313940|gb|AEB88353.1| Ribosome-binding factor A [Staphylococcus aureus subsp. aureus
T0131]
gi|329727531|gb|EGG63987.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
21172]
gi|329727805|gb|EGG64256.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
21189]
gi|329733675|gb|EGG70003.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
21193]
Length = 130
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 61/102 (59%), Gaps = 5/102 (4%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDV 66
+S RA RVGE+++ LM +I NN+ +D + I+I++V ++ DL A V+++ L D
Sbjct: 16 SSMRAERVGEQMKKELMDII-NNKVKDPRVG--FITITDVVLTNDLSQAKVFLTVLGNDK 72
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
+ AL+ FI+ +G +R LR +PEL + YD S++
Sbjct: 73 EVENTFKALDKAKGFIKSELGSRMR-LRIMPELMYEYDQSIE 113
>gi|15924260|ref|NP_371794.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
Mu50]
gi|15926853|ref|NP_374386.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
N315]
gi|21282882|ref|NP_645970.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus MW2]
gi|49483433|ref|YP_040657.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
MRSA252]
gi|49486109|ref|YP_043330.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
MSSA476]
gi|57651840|ref|YP_186146.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus COL]
gi|82750871|ref|YP_416612.1| ribosome-binding factor A [Staphylococcus aureus RF122]
gi|87161703|ref|YP_493860.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|88194980|ref|YP_499780.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus NCTC
8325]
gi|150393819|ref|YP_001316494.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus JH1]
gi|156979591|ref|YP_001441850.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus Mu3]
gi|161509436|ref|YP_001575095.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
USA300_TCH1516]
gi|221142504|ref|ZP_03566997.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus str.
JKD6009]
gi|253315626|ref|ZP_04838839.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus str.
CF-Marseille]
gi|255006057|ref|ZP_05144658.2| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
Mu50-omega]
gi|262048160|ref|ZP_06021047.1| ribosome-binding factor A [Staphylococcus aureus D30]
gi|262051332|ref|ZP_06023555.1| ribosome-binding factor A [Staphylococcus aureus 930918-3]
gi|269202887|ref|YP_003282156.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
ED98]
gi|284024263|ref|ZP_06378661.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus 132]
gi|294848266|ref|ZP_06789013.1| ribosome-binding factor A [Staphylococcus aureus A9754]
gi|295406207|ref|ZP_06816014.1| ribosome-binding factor A [Staphylococcus aureus A8819]
gi|295427757|ref|ZP_06820389.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
EMRSA16]
gi|296274828|ref|ZP_06857335.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus MR1]
gi|297244435|ref|ZP_06928318.1| ribosome-binding factor A [Staphylococcus aureus A8796]
gi|54039026|sp|P65967|RBFA_STAAN RecName: Full=Ribosome-binding factor A
gi|54039027|sp|P65968|RBFA_STAAW RecName: Full=Ribosome-binding factor A
gi|54041787|sp|P65966|RBFA_STAAM RecName: Full=Ribosome-binding factor A
gi|56749520|sp|Q6G9U3|RBFA_STAAS RecName: Full=Ribosome-binding factor A
gi|56749567|sp|Q6GHG5|RBFA_STAAR RecName: Full=Ribosome-binding factor A
gi|61214665|sp|Q5HGG1|RBFA_STAAC RecName: Full=Ribosome-binding factor A
gi|122540682|sp|Q2G2Q4|RBFA_STAA8 RecName: Full=Ribosome-binding factor A
gi|123486171|sp|Q2FHG8|RBFA_STAA3 RecName: Full=Ribosome-binding factor A
gi|123549084|sp|Q2YXP6|RBFA_STAAB RecName: Full=Ribosome-binding factor A
gi|166219410|sp|A7X1Q2|RBFA_STAA1 RecName: Full=Ribosome-binding factor A
gi|172049025|sp|A6QGG9|RBFA_STAAE RecName: Full=Ribosome-binding factor A
gi|182676603|sp|A5ISF4|RBFA_STAA9 RecName: Full=Ribosome-binding factor A
gi|189039563|sp|A6U189|RBFA_STAA2 RecName: Full=Ribosome-binding factor A
gi|189039564|sp|A8Z3V0|RBFA_STAAT RecName: Full=Ribosome-binding factor A
gi|13701070|dbj|BAB42365.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
N315]
gi|14247040|dbj|BAB57432.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
Mu50]
gi|21204321|dbj|BAB95018.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus MW2]
gi|49241562|emb|CAG40248.1| putative ribosome-binding factor A [Staphylococcus aureus subsp.
aureus MRSA252]
gi|49244552|emb|CAG42981.1| putative ribosome-binding factor A [Staphylococcus aureus subsp.
aureus MSSA476]
gi|57286026|gb|AAW38120.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus COL]
gi|82656402|emb|CAI80821.1| ribosome-binding factor A [Staphylococcus aureus RF122]
gi|87127677|gb|ABD22191.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|87202538|gb|ABD30348.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus NCTC
8325]
gi|149946271|gb|ABR52207.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus JH1]
gi|156721726|dbj|BAF78143.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus Mu3]
gi|160368245|gb|ABX29216.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
USA300_TCH1516]
gi|259160707|gb|EEW45728.1| ribosome-binding factor A [Staphylococcus aureus 930918-3]
gi|259163726|gb|EEW48281.1| ribosome-binding factor A [Staphylococcus aureus D30]
gi|262075177|gb|ACY11150.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
ED98]
gi|285816952|gb|ADC37439.1| Ribosome-binding factor A [Staphylococcus aureus 04-02981]
gi|294825066|gb|EFG41488.1| ribosome-binding factor A [Staphylococcus aureus A9754]
gi|294968795|gb|EFG44817.1| ribosome-binding factor A [Staphylococcus aureus A8819]
gi|295128115|gb|EFG57749.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
EMRSA16]
gi|297178465|gb|EFH37711.1| ribosome-binding factor A [Staphylococcus aureus A8796]
gi|298694562|gb|ADI97784.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
ED133]
gi|302332876|gb|ADL23069.1| ribosome-binding factor A (P15B PROTEIN) [Staphylococcus aureus
subsp. aureus JKD6159]
gi|312829664|emb|CBX34506.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
ECT-R 2]
gi|315131064|gb|EFT87048.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
CGS03]
gi|315194158|gb|EFU24551.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
CGS00]
gi|315198512|gb|EFU28841.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
CGS01]
Length = 116
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 61/102 (59%), Gaps = 5/102 (4%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDV 66
+S RA RVGE+++ LM +I NN+ +D + I+I++V ++ DL A V+++ L D
Sbjct: 2 SSMRAERVGEQMKKELMDII-NNKVKDPRVG--FITITDVVLTNDLSQAKVFLTVLGNDK 58
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
+ AL+ FI+ +G +R LR +PEL + YD S++
Sbjct: 59 EVENTFKALDKAKGFIKSELGSRMR-LRIMPELMYEYDQSIE 99
>gi|125973505|ref|YP_001037415.1| ribosome-binding factor A [Clostridium thermocellum ATCC 27405]
gi|281417708|ref|ZP_06248728.1| ribosome-binding factor A [Clostridium thermocellum JW20]
gi|182676539|sp|A3DE43|RBFA_CLOTH RecName: Full=Ribosome-binding factor A
gi|125713730|gb|ABN52222.1| ribosome-binding factor A [Clostridium thermocellum ATCC 27405]
gi|281409110|gb|EFB39368.1| ribosome-binding factor A [Clostridium thermocellum JW20]
Length = 123
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 57/99 (57%), Gaps = 4/99 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
R R+ EE++ + +I NE +D +S+ +ISI+EV ++ DLR A VY+S + +
Sbjct: 3 RIERISEEIKREISDII-QNELKDPRLSK-LISITEVNVTKDLRYAKVYVSVMGSEEEKA 60
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
+ L FIR IGR ++ LRY PE+ F D S++
Sbjct: 61 NSLEGLKSAAGFIRREIGRRVQ-LRYTPEIHFELDNSIE 98
>gi|282916530|ref|ZP_06324288.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
D139]
gi|283770334|ref|ZP_06343226.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus H19]
gi|282319017|gb|EFB49369.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
D139]
gi|283460481|gb|EFC07571.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus H19]
Length = 119
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 61/102 (59%), Gaps = 5/102 (4%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDV 66
+S RA RVGE+++ LM +I NN+ +D + I+I++V ++ DL A V+++ L D
Sbjct: 5 SSMRAERVGEQMKKELMDII-NNKVKDPRVG--FITITDVVLTNDLSQAKVFLTVLGNDK 61
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
+ AL+ FI+ +G +R LR +PEL + YD S++
Sbjct: 62 EVENTFKALDKAKGFIKSELGSRMR-LRIMPELMYEYDQSIE 102
>gi|170719908|ref|YP_001747596.1| ribosome-binding factor A [Pseudomonas putida W619]
gi|229568642|sp|B1J2B0|RBFA_PSEPW RecName: Full=Ribosome-binding factor A
gi|169757911|gb|ACA71227.1| ribosome-binding factor A [Pseudomonas putida W619]
Length = 132
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 66/114 (57%), Gaps = 7/114 (6%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
K R R+G++++ L +I E +D + +++I+ V +S DL A V+I++ +
Sbjct: 3 KEYSRTQRIGDQMQRELAELI-RREVKDPRVG--LVTITAVDVSRDLGHAKVFITVMGEE 59
Query: 67 SPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+PD V + ALN F+R +GRS++ LR VP+L F +D S+ L+AL+
Sbjct: 60 TPDAVQQSLKALNSAASFLRLHLGRSMQ-LRSVPQLHFHFDESVSRGVHLSALI 112
>gi|26991394|ref|NP_746819.1| ribosome-binding factor A [Pseudomonas putida KT2440]
gi|148549778|ref|YP_001269880.1| ribosome-binding factor A [Pseudomonas putida F1]
gi|32171601|sp|Q88DV8|RBFA_PSEPK RecName: Full=Ribosome-binding factor A
gi|166219394|sp|A5W986|RBFA_PSEP1 RecName: Full=Ribosome-binding factor A
gi|24986463|gb|AAN70283.1|AE016669_1 ribosome-binding factor A [Pseudomonas putida KT2440]
gi|148513836|gb|ABQ80696.1| ribosome-binding factor A [Pseudomonas putida F1]
gi|313500619|gb|ADR61985.1| RbfA [Pseudomonas putida BIRD-1]
Length = 132
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 66/114 (57%), Gaps = 7/114 (6%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
K R R+G++++ L +I E +D + +++I+ V +S DL A V+I++ +
Sbjct: 3 KEYSRTQRIGDQMQRELAELI-RREVKDPRVG--LVTITAVDVSRDLGHAKVFITVMGEE 59
Query: 67 SPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+PD V + ALN F+R +GRS++ LR VP+L F +D S+ L+AL+
Sbjct: 60 TPDAVQQSLKALNSAASFLRLHLGRSMQ-LRSVPQLHFHFDESVSRGVHLSALI 112
>gi|167035702|ref|YP_001670933.1| ribosome-binding factor A [Pseudomonas putida GB-1]
gi|189039552|sp|B0KHX7|RBFA_PSEPG RecName: Full=Ribosome-binding factor A
gi|166862190|gb|ABZ00598.1| ribosome-binding factor A [Pseudomonas putida GB-1]
Length = 132
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 66/114 (57%), Gaps = 7/114 (6%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
K R R+G++++ L +I E +D + +++I+ V +S DL A V+I++ +
Sbjct: 3 KEYSRTQRIGDQMQRELAELI-RREVKDPRVG--LVTITAVDVSRDLGHAKVFITVMGEE 59
Query: 67 SPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+PD V + ALN F+R +GRS++ LR VP+L F +D S+ L+AL+
Sbjct: 60 TPDAVQQSLKALNSAASFLRLHLGRSMQ-LRSVPQLHFHFDESVSRGVHLSALI 112
>gi|255655323|ref|ZP_05400732.1| ribosome-binding factor A [Clostridium difficile QCD-23m63]
gi|296451308|ref|ZP_06893048.1| ribosome-binding factor A [Clostridium difficile NAP08]
gi|296880340|ref|ZP_06904303.1| ribosome-binding factor A [Clostridium difficile NAP07]
gi|296259914|gb|EFH06769.1| ribosome-binding factor A [Clostridium difficile NAP08]
gi|296428581|gb|EFH14465.1| ribosome-binding factor A [Clostridium difficile NAP07]
Length = 126
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 65/107 (60%), Gaps = 4/107 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
R R+ EE+R + +++N R+ S ++S+++V ++ DLR A VY+S+ L +
Sbjct: 6 RTRRISEEIRKVVSTMLINGVKDPRITS--MVSVTDVEVTNDLRYAYVYVSI-LGGDEES 62
Query: 71 VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
++ L +IR +G++++ LRY+PE+ F+ D S++ +++L+
Sbjct: 63 TLTGLKSAGGYIRREVGKNIK-LRYIPEIVFKIDDSIEKGMYMDSLI 108
>gi|167856180|ref|ZP_02478918.1| ribosome-binding factor A [Haemophilus parasuis 29755]
gi|167852702|gb|EDS23978.1| ribosome-binding factor A [Haemophilus parasuis 29755]
Length = 127
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 64/111 (57%), Gaps = 7/111 (6%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP-- 68
RA RV +E++ + +IL E +D I ++++S+V +S DL A V+++ D
Sbjct: 7 RADRVAQELQKEI-AIILQREVKDPRIG--MVTVSDVEISRDLAYAKVFVTFLFDSDESA 63
Query: 69 -DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+R + LN +IR +G+++R LR VPELRF YD SL +++ L+
Sbjct: 64 VERGLEGLNKASGYIRTLVGKAMR-LRIVPELRFVYDQSLVEGMRMSNLVT 113
>gi|210622614|ref|ZP_03293274.1| hypothetical protein CLOHIR_01222 [Clostridium hiranonis DSM 13275]
gi|210154115|gb|EEA85121.1| hypothetical protein CLOHIR_01222 [Clostridium hiranonis DSM 13275]
Length = 127
Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 65/107 (60%), Gaps = 4/107 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
R R+ EE++ + +++N R+ S +IS+++V ++ DLR A VY+SL L + +
Sbjct: 6 RTRRISEEIKKIIGQMLINGIKDPRITS--MISVTDVDVTNDLRYAFVYVSL-LGGNEEE 62
Query: 71 VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
++ L +IR +G+ ++ LRY+PE+ F+ D S++ +++L+
Sbjct: 63 SLAGLKSAAGYIRREVGKKVK-LRYIPEIMFKVDDSIERGMYMDSLI 108
>gi|49478390|ref|YP_037872.1| ribosome-binding factor A [Bacillus thuringiensis serovar konkukian
str. 97-27]
gi|52141678|ref|YP_085152.1| ribosome-binding factor A [Bacillus cereus E33L]
gi|118479031|ref|YP_896182.1| ribosome-binding factor A [Bacillus thuringiensis str. Al Hakam]
gi|196042166|ref|ZP_03109449.1| ribosome-binding factor A [Bacillus cereus NVH0597-99]
gi|196044539|ref|ZP_03111774.1| ribosome-binding factor A [Bacillus cereus 03BB108]
gi|225865790|ref|YP_002751168.1| ribosome-binding factor A [Bacillus cereus 03BB102]
gi|229092851|ref|ZP_04223985.1| Ribosome-binding factor A [Bacillus cereus Rock3-42]
gi|229186048|ref|ZP_04313218.1| Ribosome-binding factor A [Bacillus cereus BGSC 6E1]
gi|301055301|ref|YP_003793512.1| ribosome-binding factor A [Bacillus anthracis CI]
gi|61214843|sp|Q636L5|RBFA_BACCZ RecName: Full=Ribosome-binding factor A
gi|61215017|sp|Q6HF04|RBFA_BACHK RecName: Full=Ribosome-binding factor A
gi|166218421|sp|A0RHI2|RBFA_BACAH RecName: Full=Ribosome-binding factor A
gi|254789732|sp|C1EP33|RBFA_BACC3 RecName: Full=Ribosome-binding factor A
gi|49329946|gb|AAT60592.1| ribosome-binding factor A [Bacillus thuringiensis serovar konkukian
str. 97-27]
gi|51975147|gb|AAU16697.1| ribosome-binding factor A [Bacillus cereus E33L]
gi|118418256|gb|ABK86675.1| ribosome-binding factor A [Bacillus thuringiensis str. Al Hakam]
gi|196024574|gb|EDX63246.1| ribosome-binding factor A [Bacillus cereus 03BB108]
gi|196027018|gb|EDX65642.1| ribosome-binding factor A [Bacillus cereus NVH0597-99]
gi|225790371|gb|ACO30588.1| ribosome-binding factor A [Bacillus cereus 03BB102]
gi|228597467|gb|EEK55117.1| Ribosome-binding factor A [Bacillus cereus BGSC 6E1]
gi|228690473|gb|EEL44256.1| Ribosome-binding factor A [Bacillus cereus Rock3-42]
gi|300377470|gb|ADK06374.1| ribosome-binding factor A [Bacillus cereus biovar anthracis str.
CI]
Length = 118
Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 63/108 (58%), Gaps = 5/108 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
RA RVGE+++ L I++ + +D + +++++V +S DL++ATVYIS L + +
Sbjct: 4 RANRVGEQMKKEL-GDIISRKIKDPRVG--FVTVTDVQVSGDLQIATVYISVLGDEEQKE 60
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ L FIR IG+ +R LR PE+ F +D S+ +++ L+
Sbjct: 61 NTLKGLAKAKGFIRSEIGQRIR-LRKTPEISFEFDESIGYGHRIDTLL 107
>gi|83855206|ref|ZP_00948736.1| ribosome-binding factor A [Sulfitobacter sp. NAS-14.1]
gi|83941728|ref|ZP_00954190.1| ribosome-binding factor A [Sulfitobacter sp. EE-36]
gi|83843049|gb|EAP82216.1| ribosome-binding factor A [Sulfitobacter sp. NAS-14.1]
gi|83847548|gb|EAP85423.1| ribosome-binding factor A [Sulfitobacter sp. EE-36]
Length = 142
Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 58/101 (57%), Gaps = 5/101 (4%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL--DV 66
S+R LRVGE +R AL V+ + D ++R I++ EV S DL++AT Y+ LPL D
Sbjct: 16 SQRQLRVGETIRRALSDVLARGDVHDPELNRMSITVGEVRASPDLKIATAYV-LPLGGDG 74
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSL 107
D V+ L N +R + + L L+Y P+LRF+ D +
Sbjct: 75 QED-VLKLLARNKGELRRLMAKKL-VLKYAPDLRFQLDETF 113
>gi|167635838|ref|ZP_02394147.1| ribosome-binding factor A [Bacillus anthracis str. A0442]
gi|170687860|ref|ZP_02879074.1| ribosome-binding factor A [Bacillus anthracis str. A0465]
gi|218904938|ref|YP_002452772.1| ribosome-binding factor A [Bacillus cereus AH820]
gi|228916448|ref|ZP_04080014.1| Ribosome-binding factor A [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|228928859|ref|ZP_04091891.1| Ribosome-binding factor A [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228935125|ref|ZP_04097952.1| Ribosome-binding factor A [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228947530|ref|ZP_04109820.1| Ribosome-binding factor A [Bacillus thuringiensis serovar monterrey
BGSC 4AJ1]
gi|229123324|ref|ZP_04252528.1| Ribosome-binding factor A [Bacillus cereus 95/8201]
gi|254683482|ref|ZP_05147342.1| ribosome-binding factor A [Bacillus anthracis str. CNEVA-9066]
gi|254722003|ref|ZP_05183792.1| ribosome-binding factor A [Bacillus anthracis str. A1055]
gi|254739625|ref|ZP_05197319.1| ribosome-binding factor A [Bacillus anthracis str. Kruger B]
gi|226736635|sp|B7JJ88|RBFA_BACC0 RecName: Full=Ribosome-binding factor A
gi|167528795|gb|EDR91553.1| ribosome-binding factor A [Bacillus anthracis str. A0442]
gi|170668176|gb|EDT18925.1| ribosome-binding factor A [Bacillus anthracis str. A0465]
gi|218535717|gb|ACK88115.1| ribosome-binding factor A [Bacillus cereus AH820]
gi|228660100|gb|EEL15736.1| Ribosome-binding factor A [Bacillus cereus 95/8201]
gi|228812050|gb|EEM58381.1| Ribosome-binding factor A [Bacillus thuringiensis serovar monterrey
BGSC 4AJ1]
gi|228824490|gb|EEM70295.1| Ribosome-binding factor A [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228830666|gb|EEM76271.1| Ribosome-binding factor A [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228843027|gb|EEM88109.1| Ribosome-binding factor A [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
Length = 118
Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 63/108 (58%), Gaps = 5/108 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
RA RVGE+++ L I++ + +D + +++++V +S DL++ATVYIS L + +
Sbjct: 4 RANRVGEQMKKEL-GDIISRKIKDPRVG--FVTVTDVQVSGDLQIATVYISVLGDEEQKE 60
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ L FIR IG+ +R LR PE+ F +D S+ +++ L+
Sbjct: 61 NTLKGLAKAKGFIRSEIGQRIR-LRKTPEISFEFDESIGYGHRIDTLL 107
>gi|219870868|ref|YP_002475243.1| ribosome-binding factor A [Haemophilus parasuis SH0165]
gi|254789752|sp|B8F4P3|RBFA_HAEPS RecName: Full=Ribosome-binding factor A
gi|219691072|gb|ACL32295.1| ribosome-binding factor A [Haemophilus parasuis SH0165]
Length = 127
Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 64/111 (57%), Gaps = 7/111 (6%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP-- 68
RA RV +E++ + +IL E +D I ++++S+V +S DL A V+++ D
Sbjct: 7 RADRVAQELQKEI-AIILQREVKDPRIG--MVTVSDVEISRDLAYAKVFVTFLFDSDESA 63
Query: 69 -DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+R + LN +IR +G+++R LR VPELRF YD SL +++ L+
Sbjct: 64 VERGLEGLNKASGYIRTLVGKAMR-LRIVPELRFVYDQSLVEGMRMSNLVT 113
>gi|15895079|ref|NP_348428.1| ribosome-binding factor A [Clostridium acetobutylicum ATCC 824]
gi|20978633|sp|Q97I50|RBFA_CLOAB RecName: Full=Ribosome-binding factor A
gi|15024776|gb|AAK79768.1|AE007689_6 Ribosome-binding factor A [Clostridium acetobutylicum ATCC 824]
gi|325509217|gb|ADZ20853.1| ribosome-binding factor A [Clostridium acetobutylicum EA 2018]
Length = 121
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 63/108 (58%), Gaps = 4/108 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
RA R+ EEV+ A+ +I N+ RL S +IS+ +V ++ DLR A Y+S+ D + +
Sbjct: 5 RAGRINEEVKKAISSIIQNDIRDPRLTS--MISVIKVDVTKDLRYAKAYVSILGDEAKKK 62
Query: 71 -VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ L + FIR +G +++ LRY PE+ DTS++ ++A++
Sbjct: 63 ETMDILKKSESFIRKELGYAVK-LRYTPEVIIELDTSIEKGMHIDAIL 109
>gi|152976177|ref|YP_001375694.1| ribosome-binding factor A [Bacillus cereus subsp. cytotoxis NVH
391-98]
gi|189039526|sp|A7GRE1|RBFA_BACCN RecName: Full=Ribosome-binding factor A
gi|152024929|gb|ABS22699.1| ribosome-binding factor A [Bacillus cytotoxicus NVH 391-98]
Length = 118
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 63/108 (58%), Gaps = 5/108 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
RA RVGE+++ L I++ + +D + +++++V +S DL++ATVYIS L + +
Sbjct: 4 RANRVGEQMKKEL-GDIISRKIKDPRVG--FVTVTDVKVSGDLQIATVYISVLGDEEQKE 60
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ L FIR IG+ +R LR PE+ F +D S+ +++ L+
Sbjct: 61 NTLKGLAKAKGFIRSEIGQRIR-LRKTPEISFEFDESIGYGHRIDTLL 107
>gi|229031441|ref|ZP_04187441.1| Ribosome-binding factor A [Bacillus cereus AH1271]
gi|228729730|gb|EEL80710.1| Ribosome-binding factor A [Bacillus cereus AH1271]
Length = 118
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 63/108 (58%), Gaps = 5/108 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
RA RVGE+++ L I++ + +D + +++++V +S DL++ATVYIS L + +
Sbjct: 4 RANRVGEQMKKEL-GDIISRKIKDPRVG--FVTVTDVQVSGDLQIATVYISVLGDEEQKE 60
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ L FIR IG+ +R LR PE+ F +D S+ +++ L+
Sbjct: 61 STLKGLAKAKGFIRSEIGQRIR-LRKTPEISFEFDESIGYGHRIDTLL 107
>gi|42782899|ref|NP_980146.1| ribosome-binding factor A [Bacillus cereus ATCC 10987]
gi|222097255|ref|YP_002531312.1| ribosome-binding factor a [Bacillus cereus Q1]
gi|229019005|ref|ZP_04175847.1| Ribosome-binding factor A [Bacillus cereus AH1273]
gi|229025250|ref|ZP_04181672.1| Ribosome-binding factor A [Bacillus cereus AH1272]
gi|229162747|ref|ZP_04290704.1| Ribosome-binding factor A [Bacillus cereus R309803]
gi|229197921|ref|ZP_04324637.1| Ribosome-binding factor A [Bacillus cereus m1293]
gi|61215104|sp|Q732R1|RBFA_BACC1 RecName: Full=Ribosome-binding factor A
gi|254789733|sp|B9IV99|RBFA_BACCQ RecName: Full=Ribosome-binding factor A
gi|42738826|gb|AAS42754.1| ribosome-binding factor A [Bacillus cereus ATCC 10987]
gi|221241313|gb|ACM14023.1| ribosome-binding factor A [Bacillus cereus Q1]
gi|228585639|gb|EEK43741.1| Ribosome-binding factor A [Bacillus cereus m1293]
gi|228620629|gb|EEK77498.1| Ribosome-binding factor A [Bacillus cereus R309803]
gi|228736078|gb|EEL86651.1| Ribosome-binding factor A [Bacillus cereus AH1272]
gi|228742333|gb|EEL92491.1| Ribosome-binding factor A [Bacillus cereus AH1273]
Length = 118
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 63/108 (58%), Gaps = 5/108 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
RA RVGE+++ L I++ + +D + +++++V +S DL++ATVYIS L + +
Sbjct: 4 RANRVGEQMKKEL-GDIISRKIKDPRVG--FVTVTDVQVSGDLQIATVYISVLGDEEQKE 60
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ L FIR IG+ +R LR PE+ F +D S+ +++ L+
Sbjct: 61 STLKGLAKAKGFIRSEIGQRIR-LRKTPEISFEFDESIGYGHRIDTLL 107
>gi|47569088|ref|ZP_00239777.1| ribosome-binding factor A [Bacillus cereus G9241]
gi|228986954|ref|ZP_04147080.1| Ribosome-binding factor A [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|229157387|ref|ZP_04285465.1| Ribosome-binding factor A [Bacillus cereus ATCC 4342]
gi|229174477|ref|ZP_04302009.1| Ribosome-binding factor A [Bacillus cereus MM3]
gi|47554250|gb|EAL12612.1| ribosome-binding factor A [Bacillus cereus G9241]
gi|228609037|gb|EEK66327.1| Ribosome-binding factor A [Bacillus cereus MM3]
gi|228626114|gb|EEK82863.1| Ribosome-binding factor A [Bacillus cereus ATCC 4342]
gi|228772732|gb|EEM21172.1| Ribosome-binding factor A [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|324327705|gb|ADY22965.1| ribosome-binding factor A [Bacillus thuringiensis serovar finitimus
YBT-020]
Length = 118
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 63/108 (58%), Gaps = 5/108 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
RA RVGE+++ L I++ + +D + +++++V +S DL++ATVYIS L + +
Sbjct: 4 RANRVGEQMKKEL-GDIISRKIKDPRVG--FVTVTDVQVSGDLQIATVYISVLGDEEQKE 60
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ L FIR IG+ +R LR PE+ F +D S+ +++ L+
Sbjct: 61 STLKGLAKAKGFIRSEIGQRIR-LRKTPEISFEFDESIGYGHRIDTLL 107
>gi|145298045|ref|YP_001140886.1| ribosome-binding factor A [Aeromonas salmonicida subsp. salmonicida
A449]
gi|166218416|sp|A4SJR6|RBFA_AERS4 RecName: Full=Ribosome-binding factor A
gi|142850817|gb|ABO89138.1| ribosome-binding factor A [Aeromonas salmonicida subsp. salmonicida
A449]
Length = 144
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 66/112 (58%), Gaps = 8/112 (7%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
R RVG++++ + +IL E +D I ++++S+V +S DL A VY++ L LD+ +
Sbjct: 7 RTNRVGQQIQREI-ALILQREVKDPRIG--MVTVSDVEVSKDLNYAKVYVTFLQLDIDAE 63
Query: 70 RV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
R+ + L +IR +G ++R LR VPELRF YD +L +++ L+
Sbjct: 64 RIAEGLKGLTEAAGYIRSLLGSAMR-LRVVPELRFYYDQTLVEGMRISNLVS 114
>gi|254470702|ref|ZP_05084105.1| ribosome-binding factor A [Pseudovibrio sp. JE062]
gi|211959844|gb|EEA95041.1| ribosome-binding factor A [Pseudovibrio sp. JE062]
Length = 146
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 64/117 (54%), Gaps = 7/117 (5%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL---D 65
S+R LRVGE VR L +++ + D + +I++ EV MS DLR A V + +P+ D
Sbjct: 13 SQRQLRVGELVRKELSDILIRGQVSDPDLDGVIITVPEVRMSPDLRWADVLV-MPMGGRD 71
Query: 66 VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
V V+ AL N K++RG++ R + ++Y +LRF DT + L+ P I
Sbjct: 72 VEV--VLEALKRNAKYLRGQVARRV-TMKYTCDLRFVADTRFDDDDLITRLLHEPSI 125
>gi|311695957|gb|ADP98830.1| ribosome-binding factor A [marine bacterium HP15]
Length = 140
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 72/120 (60%), Gaps = 13/120 (10%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP-- 63
P+ R R+G++++ L +I E +D + +++++ V +S DL A +Y+SL
Sbjct: 2 PREFSRIDRIGDQMQRELAQLI-QREVKDPRVG--MVTVNAVKVSRDLGYADIYVSLLST 58
Query: 64 ---LDVSPD--RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYW-KLNALM 117
+ SP+ I+ LN F+RG++GR+++ LR VP+LRF +DT LQ Y K+++L+
Sbjct: 59 EELTEESPEVRESIAVLNKASGFLRGQVGRAMK-LRVVPQLRFHFDT-LQGYSRKMDSLI 116
>gi|256003323|ref|ZP_05428314.1| ribosome-binding factor A [Clostridium thermocellum DSM 2360]
gi|255992613|gb|EEU02704.1| ribosome-binding factor A [Clostridium thermocellum DSM 2360]
gi|316940256|gb|ADU74290.1| ribosome-binding factor A [Clostridium thermocellum DSM 1313]
Length = 123
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 59/100 (59%), Gaps = 6/100 (6%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
R R+ EE++ + +I NE +D +S+ +ISI+EV ++ DLR A VY+S+ + ++
Sbjct: 3 RIERISEEIKREISDII-QNELKDPRLSK-LISITEVNVTKDLRYAKVYVSV-MGSKEEK 59
Query: 71 V--ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
+ L FIR IGR ++ LRY PE+ F D S++
Sbjct: 60 ANSLEGLKSAAGFIRREIGRRVQ-LRYTPEIHFELDNSIE 98
>gi|303240814|ref|ZP_07327327.1| ribosome-binding factor A [Acetivibrio cellulolyticus CD2]
gi|302591702|gb|EFL61437.1| ribosome-binding factor A [Acetivibrio cellulolyticus CD2]
Length = 118
Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 60/108 (55%), Gaps = 4/108 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
R +R+ EE+R + I+ E +D +SR +IS++ V ++ DLR A V++S + D
Sbjct: 3 RTVRISEEMRKEI-SAIIQGELKDPRLSR-LISVTNVNVTKDLRYAKVFVSIMGSDEEKK 60
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ L FIR +G ++ LRY PE++F D S++ ++ L+
Sbjct: 61 NALDGLKSAAGFIRREVGHRIQ-LRYTPEIQFELDNSIEHGAYISKLI 107
>gi|229098280|ref|ZP_04229227.1| Ribosome-binding factor A [Bacillus cereus Rock3-29]
gi|229104373|ref|ZP_04235042.1| Ribosome-binding factor A [Bacillus cereus Rock3-28]
gi|229117297|ref|ZP_04246675.1| Ribosome-binding factor A [Bacillus cereus Rock1-3]
gi|228666197|gb|EEL21661.1| Ribosome-binding factor A [Bacillus cereus Rock1-3]
gi|228679071|gb|EEL33279.1| Ribosome-binding factor A [Bacillus cereus Rock3-28]
gi|228685178|gb|EEL39109.1| Ribosome-binding factor A [Bacillus cereus Rock3-29]
Length = 118
Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 62/108 (57%), Gaps = 5/108 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
RA RVGE+++ L I++ + +D + +++++V +S DL++A VYIS L D +
Sbjct: 4 RANRVGEQMKKEL-GDIISRKIKDPRVG--FVTVTDVQVSGDLQIAKVYISVLGDDEQKE 60
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ L FIR IG+ +R LR PE+ F +D S+ +++ L+
Sbjct: 61 STLKGLAKAKGFIRSEIGQRIR-LRKTPEISFEFDESIGYGHRIDTLL 107
>gi|312143663|ref|YP_003995109.1| ribosome-binding factor A [Halanaerobium sp. 'sapolanicus']
gi|311904314|gb|ADQ14755.1| ribosome-binding factor A [Halanaerobium sp. 'sapolanicus']
Length = 127
Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 64/109 (58%), Gaps = 5/109 (4%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDVSP 68
+RA+RVGE ++ + +IL E +D I+ +S+++V +S DLR A V++S+ D
Sbjct: 4 KRAIRVGELLKEEISQIILR-EMKDPRIA--FVSVTDVKVSGDLRHAKVFVSVFGTDKEK 60
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ + L+ +IR +G ++ + + PE+ FRYD S++ ++ ++
Sbjct: 61 EETMEGLDKATGYIRKLVGERVK-IHHTPEIIFRYDDSIEQGVHISKII 108
>gi|254974857|ref|ZP_05271329.1| ribosome-binding factor A [Clostridium difficile QCD-66c26]
gi|255092244|ref|ZP_05321722.1| ribosome-binding factor A [Clostridium difficile CIP 107932]
gi|255313984|ref|ZP_05355567.1| ribosome-binding factor A [Clostridium difficile QCD-76w55]
gi|255516664|ref|ZP_05384340.1| ribosome-binding factor A [Clostridium difficile QCD-97b34]
gi|255649763|ref|ZP_05396665.1| ribosome-binding factor A [Clostridium difficile QCD-37x79]
gi|260682919|ref|YP_003214204.1| ribosome-binding factor A [Clostridium difficile CD196]
gi|260686517|ref|YP_003217650.1| ribosome-binding factor A [Clostridium difficile R20291]
gi|306519868|ref|ZP_07406215.1| ribosome-binding factor A [Clostridium difficile QCD-32g58]
gi|260209082|emb|CBA62230.1| ribosome-binding factor A [Clostridium difficile CD196]
gi|260212533|emb|CBE03487.1| ribosome-binding factor A [Clostridium difficile R20291]
Length = 126
Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 64/107 (59%), Gaps = 4/107 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
R R+ EE+R + +++N R+ S ++S+++V ++ DLR A VY+S+ L +
Sbjct: 6 RTRRIAEEIRKVVSTMLINGVKDPRITS--MVSVTDVEVTNDLRYAYVYVSI-LGGDEES 62
Query: 71 VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
++ L +IR +G++++ LRY+PE+ F+ D S++ ++ L+
Sbjct: 63 TLTGLKSAGGYIRREVGKNIK-LRYIPEIVFKLDDSIEKGMYMDNLI 108
>gi|30263814|ref|NP_846191.1| ribosome-binding factor A [Bacillus anthracis str. Ames]
gi|47529238|ref|YP_020587.1| ribosome-binding factor A [Bacillus anthracis str. 'Ames Ancestor']
gi|49186661|ref|YP_029913.1| ribosome-binding factor A [Bacillus anthracis str. Sterne]
gi|65321138|ref|ZP_00394097.1| COG0858: Ribosome-binding factor A [Bacillus anthracis str. A2012]
gi|165872633|ref|ZP_02217264.1| ribosome-binding factor A [Bacillus anthracis str. A0488]
gi|167639837|ref|ZP_02398106.1| ribosome-binding factor A [Bacillus anthracis str. A0193]
gi|170706868|ref|ZP_02897326.1| ribosome-binding factor A [Bacillus anthracis str. A0389]
gi|177652087|ref|ZP_02934633.1| ribosome-binding factor A [Bacillus anthracis str. A0174]
gi|190568437|ref|ZP_03021344.1| ribosome-binding factor A [Bacillus anthracis Tsiankovskii-I]
gi|227813281|ref|YP_002813290.1| ribosome-binding factor A [Bacillus anthracis str. CDC 684]
gi|229600478|ref|YP_002868049.1| ribosome-binding factor A [Bacillus anthracis str. A0248]
gi|254735849|ref|ZP_05193555.1| ribosome-binding factor A [Bacillus anthracis str. Western North
America USA6153]
gi|254756002|ref|ZP_05208033.1| ribosome-binding factor A [Bacillus anthracis str. Vollum]
gi|254759337|ref|ZP_05211362.1| ribosome-binding factor A [Bacillus anthracis str. Australia 94]
gi|33301489|sp|Q81WM5|RBFA_BACAN RecName: Full=Ribosome-binding factor A
gi|254789730|sp|C3P5L3|RBFA_BACAA RecName: Full=Ribosome-binding factor A
gi|254789731|sp|C3L7B6|RBFA_BACAC RecName: Full=Ribosome-binding factor A
gi|30258458|gb|AAP27677.1| ribosome-binding factor A [Bacillus anthracis str. Ames]
gi|47504386|gb|AAT33062.1| ribosome-binding factor A [Bacillus anthracis str. 'Ames Ancestor']
gi|49180588|gb|AAT55964.1| ribosome-binding factor A [Bacillus anthracis str. Sterne]
gi|164711665|gb|EDR17211.1| ribosome-binding factor A [Bacillus anthracis str. A0488]
gi|167512238|gb|EDR87615.1| ribosome-binding factor A [Bacillus anthracis str. A0193]
gi|170128286|gb|EDS97155.1| ribosome-binding factor A [Bacillus anthracis str. A0389]
gi|172082456|gb|EDT67521.1| ribosome-binding factor A [Bacillus anthracis str. A0174]
gi|190560441|gb|EDV14419.1| ribosome-binding factor A [Bacillus anthracis Tsiankovskii-I]
gi|227007093|gb|ACP16836.1| ribosome-binding factor A [Bacillus anthracis str. CDC 684]
gi|229264886|gb|ACQ46523.1| ribosome-binding factor A [Bacillus anthracis str. A0248]
Length = 118
Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 63/108 (58%), Gaps = 5/108 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
RA RVGE+++ L I++ + +D + +++++V +S DL++ATVYIS L + +
Sbjct: 4 RANRVGEQMKKEL-GDIISRKIKDPRVG--FVTVTDVQVSRDLQIATVYISVLGDEEQKE 60
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ L FIR IG+ +R LR PE+ F +D S+ +++ L+
Sbjct: 61 NTLKGLAKAKGFIRSEIGQRIR-LRKTPEISFEFDESIGYGHRIDTLL 107
>gi|152978794|ref|YP_001344423.1| ribosome-binding factor A [Actinobacillus succinogenes 130Z]
gi|171704291|sp|A6VNE1|RBFA_ACTSZ RecName: Full=Ribosome-binding factor A
gi|150840517|gb|ABR74488.1| ribosome-binding factor A [Actinobacillus succinogenes 130Z]
Length = 129
Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 65/112 (58%), Gaps = 7/112 (6%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPD 69
+R+ RV +E++ + VIL E +D I ++++S+V +S DL A ++++ D P+
Sbjct: 6 KRSDRVAQELQKEV-AVILQREVKDPRIG--MVTVSDVEVSRDLAYAKIFVTFLFDNDPE 62
Query: 70 RV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ + L +IR +G+++R LR VPELRF YD SL +++ L+
Sbjct: 63 AIKQGMKGLEKAAPYIRSLLGKAMR-LRIVPELRFVYDQSLVEGMRMSNLVS 113
>gi|239636252|ref|ZP_04677254.1| ribosome-binding factor A [Staphylococcus warneri L37603]
gi|239597607|gb|EEQ80102.1| ribosome-binding factor A [Staphylococcus warneri L37603]
Length = 116
Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 61/108 (56%), Gaps = 5/108 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
RA RVGE+++ +M ++ NN+ +D + I+I++V ++ DL VY++ L D
Sbjct: 5 RAERVGEQMKKEIMDIV-NNKVKDPRVG--FITITDVELTNDLSQGKVYLTVLGNQKEVD 61
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
AL+ FI+ +G +R LR +PEL F YD S++ K+ ++
Sbjct: 62 NTFKALDKAKGFIKSELGSRMR-LRIIPELSFEYDESIEYGNKIERMI 108
>gi|254455287|ref|ZP_05068716.1| ribosome-binding factor A [Candidatus Pelagibacter sp. HTCC7211]
gi|207082289|gb|EDZ59715.1| ribosome-binding factor A [Candidatus Pelagibacter sp. HTCC7211]
Length = 122
Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 62/110 (56%), Gaps = 3/110 (2%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-DVS 67
S+R LRVGE ++ +L + + NE + + + I+++EV MS DL++A Y+ LPL
Sbjct: 10 SQRQLRVGEMIKQSLSMIFIRNEAKVPNLETNTITVTEVRMSQDLKIAKAYV-LPLGGKD 68
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
D VI L IR + + + ++++P+L FR D S + K+ L+
Sbjct: 69 ADEVIKVLKEYSFLIRKILSQKVV-MKFLPKLLFRKDESFEYAEKIENLI 117
>gi|78485468|ref|YP_391393.1| ribosome-binding factor A [Thiomicrospira crunogena XCL-2]
gi|123769093|sp|Q31GK4|RBFA_THICR RecName: Full=Ribosome-binding factor A
gi|78363754|gb|ABB41719.1| ribosome-binding factor A [Thiomicrospira crunogena XCL-2]
Length = 121
Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 56/111 (50%), Gaps = 8/111 (7%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL----PLDV 66
R RV E+R LM ++ + RL + ++I+E +S DL +ATVY ++ D
Sbjct: 7 RPTRVALEIRKTLMEILHRDTKDPRL---EKVNITECKISKDLSIATVYFTIIGVNEKDQ 63
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
I AL F R IG+ + NLR PE+RF YDT ++ + L+
Sbjct: 64 PAQDAIKALEKAKGFFRSEIGKRM-NLRITPEVRFFYDTVAENASHIEELI 113
>gi|228992539|ref|ZP_04152466.1| Ribosome-binding factor A [Bacillus pseudomycoides DSM 12442]
gi|228767173|gb|EEM15809.1| Ribosome-binding factor A [Bacillus pseudomycoides DSM 12442]
Length = 117
Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 62/108 (57%), Gaps = 5/108 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
RA RVGE+++ L +I + + +D I +++++V +S DL++A VYIS L + +
Sbjct: 4 RANRVGEQMKKELGEII-SRKIKDPRIG--FVTVTDVQVSGDLQIAKVYISVLGDEQQKE 60
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ L FIR IG+ +R LR PE+ F +D S+ +++ L+
Sbjct: 61 NTLKGLAKAKGFIRAEIGQRIR-LRKTPEITFEFDESIAYGHRIDTLL 107
>gi|307243339|ref|ZP_07525503.1| ribosome-binding factor A [Peptostreptococcus stomatis DSM 17678]
gi|306493286|gb|EFM65275.1| ribosome-binding factor A [Peptostreptococcus stomatis DSM 17678]
Length = 115
Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 63/109 (57%), Gaps = 4/109 (3%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
S R R+ EEVR + +++N R+ S +IS+++V ++ DLR A VYIS+ L
Sbjct: 3 SNRIKRISEEVRKVVSSMLINGIKDPRITS--MISVTDVEVTNDLRYAFVYISI-LGGDR 59
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ + LN +IR +GR ++ LRY PE+ F+ D S++ ++ L+
Sbjct: 60 EASLEGLNSARGYIRREVGRQVK-LRYAPEIVFKIDDSIERGMYMDELI 107
>gi|153004010|ref|YP_001378335.1| ribosome-binding factor A [Anaeromyxobacter sp. Fw109-5]
gi|166218417|sp|A7H9F5|RBFA_ANADF RecName: Full=Ribosome-binding factor A
gi|152027583|gb|ABS25351.1| ribosome-binding factor A [Anaeromyxobacter sp. Fw109-5]
Length = 122
Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 53/108 (49%), Gaps = 4/108 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-DVSPD 69
R RV EE R L VI R+ I+++ MS DL+ T Y+S+ D +
Sbjct: 6 RPARVAEEFRHGLADVIARGLKDPRVTG--FITVTGAKMSPDLKEVTAYVSIHAEDAERE 63
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
R + L F++ + RSLR LR+ P LRF YD S+ ++ L+
Sbjct: 64 RTLEGLKAASTFLQREVARSLR-LRHTPHLRFVYDESVARGDRIERLL 110
>gi|73662804|ref|YP_301585.1| ribosome-binding factor A [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
gi|123642449|sp|Q49X58|RBFA_STAS1 RecName: Full=Ribosome-binding factor A
gi|72495319|dbj|BAE18640.1| ribosome-binding factor A [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
Length = 114
Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 56/98 (57%), Gaps = 5/98 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
RA RVGE+++ +M I NN+ +D I ++I++V ++ DL +ATVY++ L +
Sbjct: 4 RAERVGEQMKQEIMD-IANNKVKDPRIG--FLTITDVQLTNDLSIATVYLTVLGNEKQKA 60
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSL 107
L FI+ +G +R LR +PEL F YD S+
Sbjct: 61 DTFKGLEKAKGFIKSELGSRMR-LRIIPELNFEYDESI 97
>gi|146297074|ref|YP_001180845.1| ribosome-binding factor A [Caldicellulosiruptor saccharolyticus DSM
8903]
gi|166218427|sp|A4XL69|RBFA_CALS8 RecName: Full=Ribosome-binding factor A
gi|145410650|gb|ABP67654.1| ribosome-binding factor A [Caldicellulosiruptor saccharolyticus DSM
8903]
Length = 135
Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 65/110 (59%), Gaps = 6/110 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
RA RV EE++ + +I +E +D I ++ISI +V MS DLR A V++S+ D + +
Sbjct: 5 RADRVAEEIKKEISDII-QHELKDPRICAELISIVKVNMSKDLRHAKVFVSI-FDKNREN 62
Query: 71 VISALNC--NIK-FIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ S + N K +IR I R + NLR+ PE+ F D S++ +++ ++
Sbjct: 63 ITSTMKALENAKPYIRREISRRI-NLRFSPEISFELDDSIEYGARISQIL 111
>gi|289550938|ref|YP_003471842.1| Ribosome-binding factor A [Staphylococcus lugdunensis HKU09-01]
gi|315658440|ref|ZP_07911312.1| ribosome-binding factor A [Staphylococcus lugdunensis M23590]
gi|289180470|gb|ADC87715.1| Ribosome-binding factor A [Staphylococcus lugdunensis HKU09-01]
gi|315496769|gb|EFU85092.1| ribosome-binding factor A [Staphylococcus lugdunensis M23590]
Length = 115
Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 61/108 (56%), Gaps = 5/108 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
RA RVGE+++ +M ++ NN+ +D + I+I++V ++ DL A V+++ L D D
Sbjct: 5 RAERVGEQMKKEIMDIV-NNKVKDPRVG--FITITDVDLTNDLSQAKVFLTVLGSDKEID 61
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
AL+ FI+ + +R LR +PEL F YD S+ K+ ++
Sbjct: 62 DTFKALDKAKGFIKSELATRMR-LRIIPELSFEYDKSIDYGNKIEKMI 108
>gi|182676604|sp|A7Z4T6|RBFA_BACA2 RecName: Full=Ribosome-binding factor A
gi|328553440|gb|AEB23932.1| ribosome-binding factor A [Bacillus amyloliquefaciens TA208]
Length = 117
Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 62/110 (56%), Gaps = 5/110 (4%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVS 67
S RA RVGE+++ L I++ + +D I +++++V +S DL++A VYIS L +
Sbjct: 2 SMRANRVGEQMKKEL-GDIISRKLKDPRIG--FLTVTDVRVSGDLQIAKVYISVLGGEKK 58
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ + L FIR IG +R LR PEL F +D S++ ++ L+
Sbjct: 59 KEEALKGLEKAKGFIRSEIGSRIR-LRKTPELEFEFDESIEYGNRIETLI 107
>gi|229086363|ref|ZP_04218540.1| Ribosome-binding factor A [Bacillus cereus Rock3-44]
gi|228696975|gb|EEL49783.1| Ribosome-binding factor A [Bacillus cereus Rock3-44]
Length = 118
Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 62/108 (57%), Gaps = 5/108 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
RA RVGE+++ L I++ + +D I +++++V +S DL++A VYIS L + +
Sbjct: 4 RANRVGEQMKKEL-GDIISRKIKDPRIG--FVTVTDVQVSGDLQIAKVYISVLGDEEQKE 60
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ L FIR IG+ +R LR PE+ F +D S+ +++ L+
Sbjct: 61 NTLKGLAKAKGFIRAEIGQRIR-LRKTPEITFEFDESIAYGHRIDTLL 107
>gi|126727800|ref|ZP_01743630.1| ribosome-binding factor A [Rhodobacterales bacterium HTCC2150]
gi|126702927|gb|EBA02030.1| ribosome-binding factor A [Rhodobacterales bacterium HTCC2150]
Length = 144
Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 57/107 (53%), Gaps = 3/107 (2%)
Query: 2 KNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS 61
K+ S+R LRVGE +R L V+ E D ++R I++ EV S DL++AT +I
Sbjct: 6 KDSGQGPSQRQLRVGEVIRRTLAEVLQRGEIHDPDLNRMSITVGEVRASPDLKIATAFI- 64
Query: 62 LPL-DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSL 107
LPL + + L N IR I + ++ L++ PELRF D +
Sbjct: 65 LPLGGEGAEEALDLLRKNRHEIRRVISKKMK-LKHSPELRFLIDVTF 110
>gi|56416865|ref|YP_153939.1| ribosome-binding factor A [Anaplasma marginale str. St. Maries]
gi|222475230|ref|YP_002563646.1| ribosome-binding factor A (rbfA) [Anaplasma marginale str. Florida]
gi|254995053|ref|ZP_05277243.1| ribosome-binding factor A (rbfA) [Anaplasma marginale str.
Mississippi]
gi|255003212|ref|ZP_05278176.1| ribosome-binding factor A (rbfA) [Anaplasma marginale str. Puerto
Rico]
gi|255004340|ref|ZP_05279141.1| ribosome-binding factor A (rbfA) [Anaplasma marginale str.
Virginia]
gi|61214728|sp|Q5PAJ6|RBFA_ANAMM RecName: Full=Ribosome-binding factor A
gi|56388097|gb|AAV86684.1| ribosome-binding factor A [Anaplasma marginale str. St. Maries]
gi|222419367|gb|ACM49390.1| ribosome-binding factor A (rbfA) [Anaplasma marginale str. Florida]
Length = 117
Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 63/118 (53%), Gaps = 6/118 (5%)
Query: 5 NPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP- 63
P R+L+V ++ AL + + EF D ++SIS V +S D R ATV++++
Sbjct: 5 TPSAGLRSLKVASVLKRALAQLFIR-EFYDL---SSMLSISGVKVSEDTRNATVFVAIGD 60
Query: 64 LDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
V D V++ALN IR + R L+ LRYVP L F+ D ++ +++ +M K
Sbjct: 61 KSVDGDEVVAALNDASNSIRRAVFRYLK-LRYVPRLHFKLDVEFDNFLRISEIMATTK 117
>gi|330685669|gb|EGG97310.1| ribosome-binding factor A [Staphylococcus epidermidis VCU121]
Length = 116
Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 60/108 (55%), Gaps = 5/108 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
RA RVGE+++ +M ++ NN+ +D + I+I++V ++ DL VY++ L D
Sbjct: 5 RAERVGEQMKKEIMDIV-NNKVKDPRVG--FITITDVELTNDLSQGKVYLTVLGNQKEVD 61
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
AL FI+ +G +R LR +PEL F YD S++ K+ ++
Sbjct: 62 NTFKALEKAKGFIKSELGSRMR-LRIIPELSFEYDESIEYGNKIERMI 108
>gi|157692348|ref|YP_001486810.1| ribosome-binding factor A [Bacillus pumilus SAFR-032]
gi|166918673|sp|A8FDD3|RBFA_BACP2 RecName: Full=Ribosome-binding factor A
gi|157681106|gb|ABV62250.1| ribosome-binding factor A [Bacillus pumilus SAFR-032]
Length = 116
Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 61/111 (54%), Gaps = 5/111 (4%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
S RA RVGE+++ L IL + +D I +++++V +S DL++A VYIS+ D
Sbjct: 2 SMRATRVGEQMKKEL-GDILGRKLKDPRIG--FLTVTDVEVSGDLQIAKVYISVLGDEKK 58
Query: 69 -DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ + L +IR IG +R LR PEL F +D S+ ++ +L+
Sbjct: 59 REETLKGLAKAKGYIRSEIGNRIR-LRKTPELHFEFDESVDYGNRIESLIA 108
>gi|312134899|ref|YP_004002237.1| ribosome-binding factor a [Caldicellulosiruptor owensensis OL]
gi|311774950|gb|ADQ04437.1| ribosome-binding factor A [Caldicellulosiruptor owensensis OL]
Length = 133
Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 65/110 (59%), Gaps = 6/110 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
R+ RV EE++ L +I +E +D + ++ISI +V MS DLR A VY+S+ D ++
Sbjct: 6 RSDRVSEEIKKELSDII-QHELKDPRLCAELISIVKVNMSKDLRHAKVYVSI-FDKDKEK 63
Query: 71 VISALNC--NIK-FIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
V S + N K +IR I R + +LR+ PE+ F D S++ +++ ++
Sbjct: 64 VESTMKALENAKPYIRREISRRI-SLRFTPEITFELDDSIEYGARISQIL 112
>gi|256544699|ref|ZP_05472071.1| ribosome-binding factor A [Anaerococcus vaginalis ATCC 51170]
gi|256399588|gb|EEU13193.1| ribosome-binding factor A [Anaerococcus vaginalis ATCC 51170]
Length = 127
Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 64/112 (57%), Gaps = 2/112 (1%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS 67
+ RR L++ +++ L ++ + RL ++SI+EV ++ DL A +++S+ D +
Sbjct: 2 DKRRTLKISSQMQKELSKILAEDINDPRLSDNVIVSITEVEVTNDLSYADIFVSVLGDEN 61
Query: 68 P-DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ VI AL+ +++ IG +R LR +PE RF+YD S++ ++ L+
Sbjct: 62 KKESVIEALDQAKGYMKKLIGERMR-LRSMPEFRFKYDNSIEHGVYMDKLIA 112
>gi|313888345|ref|ZP_07822016.1| ribosome-binding factor A [Peptoniphilus harei ACS-146-V-Sch2b]
gi|312845748|gb|EFR33138.1| ribosome-binding factor A [Peptoniphilus harei ACS-146-V-Sch2b]
Length = 117
Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 60/111 (54%), Gaps = 4/111 (3%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDV 66
N++R R+ EEVR + ++ NE +D I + SIS V ++ DL A VY+S L D
Sbjct: 2 NNKRINRISEEVRKTISNIV-QNELKDPRIPS-ITSISHVEVTNDLSFAKVYVSVLGDDY 59
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
D + LN FI+ + ++ LR +PEL F D S++ +L+ L+
Sbjct: 60 DRDEAVEGLNSAKGFIKKELAHRVK-LRAMPELIFIKDDSIEKAMELDKLI 109
>gi|332290221|ref|YP_004421073.1| ribosome-binding factor A [Gallibacterium anatis UMN179]
gi|330433117|gb|AEC18176.1| ribosome-binding factor A [Gallibacterium anatis UMN179]
Length = 128
Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 64/111 (57%), Gaps = 7/111 (6%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
RA RV +E++ + VIL E +D I ++++S+V +S DL A ++++ D +
Sbjct: 7 RAQRVAQEIKKEI-AVILQREVKDPRIG--MVTVSDVEVSRDLAYAKIFVTFLFDEDEQQ 63
Query: 71 V---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ + L+ +IR +G+++R LR VPELRF YD SL +++ L+
Sbjct: 64 IEQGMLGLHKASPYIRSLLGKAMR-LRIVPELRFVYDNSLVEGMRMSNLVT 113
>gi|255261891|ref|ZP_05341233.1| ribosome-binding factor A [Thalassiobium sp. R2A62]
gi|255104226|gb|EET46900.1| ribosome-binding factor A [Thalassiobium sp. R2A62]
Length = 136
Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 67/122 (54%), Gaps = 9/122 (7%)
Query: 2 KNKNPKN---SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATV 58
KN +P+ S R LRVGE +R L + + D ++R I++ EV ++ DL++AT
Sbjct: 3 KNSSPEGRAPSTRQLRVGELIRRTLSDALQRGDIHDPDLNRMSITVGEVRVTPDLQIATC 62
Query: 59 YISLPLDV-SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
++ LPL D I+AL N +R +G+ + L+ P+LRF D ++Y +++A
Sbjct: 63 FV-LPLGGKGGDEAIAALKRNKYELRRLVGK-VTKLKMTPDLRFLID---KTYDQMDATA 117
Query: 118 CL 119
+
Sbjct: 118 AM 119
>gi|30021900|ref|NP_833531.1| ribosome-binding factor A [Bacillus cereus ATCC 14579]
gi|163941548|ref|YP_001646432.1| ribosome-binding factor A [Bacillus weihenstephanensis KBAB4]
gi|206972662|ref|ZP_03233603.1| ribosome-binding factor A [Bacillus cereus AH1134]
gi|218235779|ref|YP_002368612.1| ribosome-binding factor A [Bacillus cereus B4264]
gi|218898963|ref|YP_002447374.1| ribosome-binding factor A [Bacillus cereus G9842]
gi|228902314|ref|ZP_04066471.1| Ribosome-binding factor A [Bacillus thuringiensis IBL 4222]
gi|228909635|ref|ZP_04073458.1| Ribosome-binding factor A [Bacillus thuringiensis IBL 200]
gi|228922565|ref|ZP_04085865.1| Ribosome-binding factor A [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228940899|ref|ZP_04103458.1| Ribosome-binding factor A [Bacillus thuringiensis serovar berliner
ATCC 10792]
gi|228954087|ref|ZP_04116116.1| Ribosome-binding factor A [Bacillus thuringiensis serovar kurstaki
str. T03a001]
gi|228960027|ref|ZP_04121691.1| Ribosome-binding factor A [Bacillus thuringiensis serovar pakistani
str. T13001]
gi|228966756|ref|ZP_04127800.1| Ribosome-binding factor A [Bacillus thuringiensis serovar sotto
str. T04001]
gi|228973828|ref|ZP_04134404.1| Ribosome-binding factor A [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228980417|ref|ZP_04140727.1| Ribosome-binding factor A [Bacillus thuringiensis Bt407]
gi|229012994|ref|ZP_04170159.1| Ribosome-binding factor A [Bacillus mycoides DSM 2048]
gi|229047497|ref|ZP_04193087.1| Ribosome-binding factor A [Bacillus cereus AH676]
gi|229061414|ref|ZP_04198759.1| Ribosome-binding factor A [Bacillus cereus AH603]
gi|229071309|ref|ZP_04204532.1| Ribosome-binding factor A [Bacillus cereus F65185]
gi|229081066|ref|ZP_04213576.1| Ribosome-binding factor A [Bacillus cereus Rock4-2]
gi|229111282|ref|ZP_04240835.1| Ribosome-binding factor A [Bacillus cereus Rock1-15]
gi|229129087|ref|ZP_04258060.1| Ribosome-binding factor A [Bacillus cereus BDRD-Cer4]
gi|229134618|ref|ZP_04263428.1| Ribosome-binding factor A [Bacillus cereus BDRD-ST196]
gi|229146382|ref|ZP_04274753.1| Ribosome-binding factor A [Bacillus cereus BDRD-ST24]
gi|229152010|ref|ZP_04280205.1| Ribosome-binding factor A [Bacillus cereus m1550]
gi|229168550|ref|ZP_04296273.1| Ribosome-binding factor A [Bacillus cereus AH621]
gi|229180087|ref|ZP_04307431.1| Ribosome-binding factor A [Bacillus cereus 172560W]
gi|229191980|ref|ZP_04318950.1| Ribosome-binding factor A [Bacillus cereus ATCC 10876]
gi|296504306|ref|YP_003666006.1| ribosome-binding factor A [Bacillus thuringiensis BMB171]
gi|33301481|sp|Q819Y8|RBFA_BACCR RecName: Full=Ribosome-binding factor A
gi|226723592|sp|A9VT48|RBFA_BACWK RecName: Full=Ribosome-binding factor A
gi|226736636|sp|B7IUG9|RBFA_BACC2 RecName: Full=Ribosome-binding factor A
gi|226736637|sp|B7HDT4|RBFA_BACC4 RecName: Full=Ribosome-binding factor A
gi|29897456|gb|AAP10732.1| Ribosome-binding factor A [Bacillus cereus ATCC 14579]
gi|163863745|gb|ABY44804.1| ribosome-binding factor A [Bacillus weihenstephanensis KBAB4]
gi|206732419|gb|EDZ49600.1| ribosome-binding factor A [Bacillus cereus AH1134]
gi|218163736|gb|ACK63728.1| ribosome-binding factor A [Bacillus cereus B4264]
gi|218545696|gb|ACK98090.1| ribosome-binding factor A [Bacillus cereus G9842]
gi|228591531|gb|EEK49380.1| Ribosome-binding factor A [Bacillus cereus ATCC 10876]
gi|228603296|gb|EEK60773.1| Ribosome-binding factor A [Bacillus cereus 172560W]
gi|228614956|gb|EEK72058.1| Ribosome-binding factor A [Bacillus cereus AH621]
gi|228631359|gb|EEK87993.1| Ribosome-binding factor A [Bacillus cereus m1550]
gi|228637015|gb|EEK93474.1| Ribosome-binding factor A [Bacillus cereus BDRD-ST24]
gi|228648879|gb|EEL04904.1| Ribosome-binding factor A [Bacillus cereus BDRD-ST196]
gi|228654324|gb|EEL10189.1| Ribosome-binding factor A [Bacillus cereus BDRD-Cer4]
gi|228672058|gb|EEL27349.1| Ribosome-binding factor A [Bacillus cereus Rock1-15]
gi|228702110|gb|EEL54586.1| Ribosome-binding factor A [Bacillus cereus Rock4-2]
gi|228711763|gb|EEL63715.1| Ribosome-binding factor A [Bacillus cereus F65185]
gi|228717837|gb|EEL69485.1| Ribosome-binding factor A [Bacillus cereus AH603]
gi|228723744|gb|EEL75099.1| Ribosome-binding factor A [Bacillus cereus AH676]
gi|228748248|gb|EEL98108.1| Ribosome-binding factor A [Bacillus mycoides DSM 2048]
gi|228779237|gb|EEM27494.1| Ribosome-binding factor A [Bacillus thuringiensis Bt407]
gi|228785853|gb|EEM33856.1| Ribosome-binding factor A [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228792855|gb|EEM40413.1| Ribosome-binding factor A [Bacillus thuringiensis serovar sotto
str. T04001]
gi|228799543|gb|EEM46496.1| Ribosome-binding factor A [Bacillus thuringiensis serovar pakistani
str. T13001]
gi|228805653|gb|EEM52243.1| Ribosome-binding factor A [Bacillus thuringiensis serovar kurstaki
str. T03a001]
gi|228818735|gb|EEM64801.1| Ribosome-binding factor A [Bacillus thuringiensis serovar berliner
ATCC 10792]
gi|228836994|gb|EEM82335.1| Ribosome-binding factor A [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228849924|gb|EEM94755.1| Ribosome-binding factor A [Bacillus thuringiensis IBL 200]
gi|228857283|gb|EEN01786.1| Ribosome-binding factor A [Bacillus thuringiensis IBL 4222]
gi|296325358|gb|ADH08286.1| ribosome-binding factor A [Bacillus thuringiensis BMB171]
gi|326941577|gb|AEA17473.1| ribosome-binding factor A [Bacillus thuringiensis serovar chinensis
CT-43]
Length = 118
Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 62/108 (57%), Gaps = 5/108 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
RA RVGE+++ L I++ + +D I +++++V +S DL++A VYIS L + +
Sbjct: 4 RANRVGEQMKKEL-GDIISRKIKDPRIG--FVTVTDVQVSGDLQIAKVYISVLGDEEQKE 60
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ L FIR IG+ +R LR PE+ F +D S+ +++ L+
Sbjct: 61 NTLKGLAKAKGFIRSEIGQRIR-LRKTPEITFEFDESIGYGHRIDTLL 107
>gi|154686082|ref|YP_001421243.1| ribosome-binding factor A [Bacillus amyloliquefaciens FZB42]
gi|308173628|ref|YP_003920333.1| ribosome-binding factor A [Bacillus amyloliquefaciens DSM 7]
gi|154351933|gb|ABS74012.1| RbfA [Bacillus amyloliquefaciens FZB42]
gi|307606492|emb|CBI42863.1| ribosome-binding factor A [Bacillus amyloliquefaciens DSM 7]
gi|328911769|gb|AEB63365.1| Ribosome-binding factor A [Bacillus amyloliquefaciens LL3]
Length = 115
Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 61/108 (56%), Gaps = 5/108 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
RA RVGE+++ L I++ + +D I +++++V +S DL++A VYIS L + +
Sbjct: 2 RANRVGEQMKKEL-GDIISRKLKDPRIG--FLTVTDVRVSGDLQIAKVYISVLGGEKKKE 58
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ L FIR IG +R LR PEL F +D S++ ++ L+
Sbjct: 59 EALKGLEKAKGFIRSEIGSRIR-LRKTPELEFEFDESIEYGNRIETLI 105
>gi|293526627|ref|ZP_06671312.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
M1015]
gi|290920699|gb|EFD97762.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
M1015]
Length = 130
Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 60/102 (58%), Gaps = 5/102 (4%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDV 66
+S RA RVGE+++ LM +I NN+ +D + I+I++V ++ DL V+++ L D
Sbjct: 16 SSMRAERVGEQMKKELMDII-NNKVKDPRVG--FITITDVVLTNDLSQVKVFLTVLGNDK 72
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
+ AL+ FI+ +G +R LR +PEL + YD S++
Sbjct: 73 EVENTFKALDKAKGFIKSELGSRMR-LRIMPELMYEYDQSIE 113
>gi|212696547|ref|ZP_03304675.1| hypothetical protein ANHYDRO_01085 [Anaerococcus hydrogenalis DSM
7454]
gi|325847937|ref|ZP_08170108.1| ribosome-binding factor A [Anaerococcus hydrogenalis
ACS-025-V-Sch4]
gi|212676483|gb|EEB36090.1| hypothetical protein ANHYDRO_01085 [Anaerococcus hydrogenalis DSM
7454]
gi|325480806|gb|EGC83860.1| ribosome-binding factor A [Anaerococcus hydrogenalis
ACS-025-V-Sch4]
Length = 127
Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 62/112 (55%), Gaps = 2/112 (1%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDV 66
+ RR L++ +++ L ++ + RL ++SI++V ++ DL A +++S L D
Sbjct: 2 DKRRTLKISSQMQKELSKILAEDINDPRLSDNVIVSITDVEVTNDLSYADIFVSVLGDDS 61
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ VI AL +++ IG +R LR +PE RF+YD S++ ++ L+
Sbjct: 62 KKESVIEALEQAKGYMKKLIGERMR-LRSMPEFRFKYDNSIEHGVYMDKLIA 112
>gi|302872112|ref|YP_003840748.1| ribosome-binding factor A [Caldicellulosiruptor obsidiansis OB47]
gi|302574971|gb|ADL42762.1| ribosome-binding factor A [Caldicellulosiruptor obsidiansis OB47]
Length = 132
Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 65/110 (59%), Gaps = 6/110 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
R+ RV EE++ L +I +E +D + ++IS+ +V MS DLR A VY+S+ D ++
Sbjct: 5 RSDRVSEEIKKELSDII-QHELKDPRLCAELISVVKVNMSKDLRYAKVYVSI-FDKDKEK 62
Query: 71 VISALNC--NIK-FIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
V S + N K +IR I R + +LR+ PE+ F D S++ +++ ++
Sbjct: 63 VESTMKALENAKPYIRREISRRI-SLRFTPEITFELDDSIEYGARISQIL 111
>gi|317493627|ref|ZP_07952048.1| ribosome-binding protein A [Enterobacteriaceae bacterium 9_2_54FAA]
gi|316918570|gb|EFV39908.1| ribosome-binding protein A [Enterobacteriaceae bacterium 9_2_54FAA]
Length = 136
Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 64/116 (55%), Gaps = 7/116 (6%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K R RV +E++ + +IL E +D I ++++S V +S DL A V+++ D
Sbjct: 2 AKEFSRTQRVSQEMQKEI-AIILQREVKDPRIG--MVTVSGVEVSRDLAYAKVFVTFLND 58
Query: 66 VSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
P+ V + AL+ FIR IG+++R LR VPEL F YD SL +++ L+
Sbjct: 59 SDPNAVRVGLKALHEASGFIRMLIGKAMR-LRVVPELTFSYDNSLVEGMRMSNLVT 113
>gi|229824771|ref|ZP_04450840.1| hypothetical protein GCWU000182_00120 [Abiotrophia defectiva ATCC
49176]
gi|229791100|gb|EEP27214.1| hypothetical protein GCWU000182_00120 [Abiotrophia defectiva ATCC
49176]
Length = 128
Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 65/112 (58%), Gaps = 4/112 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
KNS + +R+ EV+ AL +I R+ S + S+++V ++ DL+ A V++S+ D
Sbjct: 3 KNSIKNVRINSEVQRALSELIRMGVKDPRVSS--LTSVTDVEVAPDLKTAKVFVSVLGDE 60
Query: 67 SPDR-VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ + L + ++R ++ +S+ NLR PELRF DTS++ ++AL+
Sbjct: 61 KKQKDTLEGLKSAMPYLRSQLAKSI-NLRNTPELRFHLDTSIEYGMHMSALI 111
>gi|89067209|ref|ZP_01154722.1| ribosome-binding factor A [Oceanicola granulosus HTCC2516]
gi|89046778|gb|EAR52832.1| ribosome-binding factor A [Oceanicola granulosus HTCC2516]
Length = 143
Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 64/122 (52%), Gaps = 7/122 (5%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL---D 65
S+R LRVGE +R L V+ + D ++ I++SEV + DL++AT Y+ LPL D
Sbjct: 16 SQRQLRVGELIRRTLSDVLARGDVHDPDLTGMSITVSEVQTTPDLKIATAYV-LPLGGRD 74
Query: 66 VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
V + AL N +R + ++L L++ P+LRFR D + + P++
Sbjct: 75 VEV--ALKALARNKGELRRAVSKNL-TLKFAPDLRFRVDETFDRIDDTRRMFNEPRVRQD 131
Query: 126 LE 127
+E
Sbjct: 132 IE 133
>gi|330721902|gb|EGG99855.1| Ribosome-binding factor A [gamma proteobacterium IMCC2047]
Length = 130
Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 66/113 (58%), Gaps = 7/113 (6%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDV 66
+S R RV ++++ L +I E +D + ++++S V +S DL A V+I+ L D
Sbjct: 3 DSSRRQRVADQIQKELAGLI-QREMKDPRLG--MVTVSAVDVSRDLAYADVFITMLGKDD 59
Query: 67 SPDR--VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ R + L F+RG++ R++R LR VP LRFRYD S++ +L++L+
Sbjct: 60 AEARQQTLDILGRGAGFLRGKLARAMR-LRIVPALRFRYDESIERGARLSSLI 111
>gi|222529044|ref|YP_002572926.1| ribosome-binding factor A [Caldicellulosiruptor bescii DSM 6725]
gi|254789728|sp|B9MR49|RBFA_ANATD RecName: Full=Ribosome-binding factor A
gi|222455891|gb|ACM60153.1| ribosome-binding factor A [Caldicellulosiruptor bescii DSM 6725]
Length = 132
Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 66/116 (56%), Gaps = 6/116 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
R+ RV EE++ L +I ++ +D + ++ISI +V MS DLR A VY+S+ D ++
Sbjct: 5 RSDRVSEEIKKELSDII-QHDLKDPRLCAELISIVKVNMSKDLRHAKVYVSI-FDKDKEK 62
Query: 71 V---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIP 123
V + AL +IR I R + +LR+ PE+ F D S++ +++ ++ IP
Sbjct: 63 VETTMKALENAKPYIRREISRRI-SLRFTPEITFELDDSIEYGARISQILNQLNIP 117
>gi|314933449|ref|ZP_07840814.1| ribosome-binding factor A [Staphylococcus caprae C87]
gi|313653599|gb|EFS17356.1| ribosome-binding factor A [Staphylococcus caprae C87]
Length = 116
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 58/99 (58%), Gaps = 5/99 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
RA RVGE+++ +M ++ NN+ +D + ++I++V ++ DL A VY++ L + D
Sbjct: 5 RAERVGEQMKQEIMDIV-NNKVKDPRVG--FLTITDVELTNDLSHAKVYLTVLGSNKEID 61
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
AL FI+ +G +R LR +P+L F YD S++
Sbjct: 62 NTFKALEKAKGFIKSELGSRMR-LRIIPDLTFEYDKSIE 99
>gi|326791496|ref|YP_004309317.1| ribosome-binding factor A [Clostridium lentocellum DSM 5427]
gi|326542260|gb|ADZ84119.1| ribosome-binding factor A [Clostridium lentocellum DSM 5427]
Length = 118
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 61/110 (55%), Gaps = 2/110 (1%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
S+R R+ EE+R + ++ ++ +D + +IS+ V + DL+ A V+IS+ D
Sbjct: 3 SQRLTRINEEMRREIAEIV-RSDIKDPGVQDAMISVIAVETTNDLKTAKVFISVLQDNKK 61
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ ++AL +IR I R + NLR PEL FR D S++ +++ ++
Sbjct: 62 EAALAALTKAQGYIRKEIARRI-NLRNTPELLFRLDESIERGMQMSKMIA 110
>gi|33239584|ref|NP_874526.1| ribosome-binding factor A [Prochlorococcus marinus subsp. marinus
str. CCMP1375]
gi|39931797|sp|Q7VE81|RBFA_PROMA RecName: Full=Ribosome-binding factor A
gi|33237109|gb|AAP99178.1| Ribosome-binding factor A [Prochlorococcus marinus subsp. marinus
str. CCMP1375]
Length = 130
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 60/102 (58%), Gaps = 3/102 (2%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDV 66
SRR +V +R M +L+N +D+ ++ +I+I+EV +S DL+ +++S+ ++
Sbjct: 3 QSRRVEKVAALIRKE-MSELLSNGIRDQRVNTTMITITEVEVSGDLQHCKIFVSIYGNEI 61
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
D V S L + F++G +GR L+ +R PE+ F+ D ++
Sbjct: 62 QKDEVFSGLEASQSFLKGELGRRLQ-MRRAPEVVFKLDRGME 102
>gi|251797396|ref|YP_003012127.1| ribosome-binding factor A [Paenibacillus sp. JDR-2]
gi|247545022|gb|ACT02041.1| ribosome-binding factor A [Paenibacillus sp. JDR-2]
Length = 118
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 60/108 (55%), Gaps = 5/108 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
R RVGE+++ L +I E +D I I+++ V + DL A VY+S L + +
Sbjct: 5 RVGRVGEQIKKELSQII-QTELKDPRIG--FITVTGVEATSDLSQARVYLSVLGSEEQKE 61
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ AL ++R +G+ +R LR+ PEL F++D+S++ ++ L+
Sbjct: 62 ETLKALGKANGYLRSELGKRMR-LRHTPELLFKFDSSIEYGSRIEGLL 108
>gi|297184032|gb|ADI20152.1| ribosome-binding factor a [uncultured alpha proteobacterium
EB080_L06A09]
Length = 135
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 63/105 (60%), Gaps = 5/105 (4%)
Query: 4 KNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP 63
K P S+R LRVGE +R A+ V+L + D ++ I++ EV + DL++A VY+ LP
Sbjct: 10 KGP--SQRQLRVGEMLRRAVSDVLLRGDIHDTDLAHVSITVGEVRSTPDLKLALVYV-LP 66
Query: 64 L-DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSL 107
L + + VI+ALN N IR + + L +L+Y P+L+F D +
Sbjct: 67 LGGQNAEIVINALNKNKYEIRRSVNK-LVSLKYSPDLKFVLDRTF 110
>gi|322831215|ref|YP_004211242.1| ribosome-binding factor A [Rahnella sp. Y9602]
gi|321166416|gb|ADW72115.1| ribosome-binding factor A [Rahnella sp. Y9602]
Length = 137
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 65/122 (53%), Gaps = 14/122 (11%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K R RV +E++ + +IL E +D + + ++S V +S DL A V+++ LD
Sbjct: 2 AKEFSRTQRVSQEMQKEI-AIILQREVKDPRVG--MATVSGVEVSRDLAYAKVFVTF-LD 57
Query: 66 V------SPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNAL 116
V PDRV I AL FIR IG+++R LR VPEL F YD SL +++ L
Sbjct: 58 VLTTDNHDPDRVKNGIKALQDASGFIRTLIGKAMR-LRVVPELTFAYDNSLVEGMRMSNL 116
Query: 117 MC 118
+
Sbjct: 117 VT 118
>gi|168207529|ref|ZP_02633534.1| ribosome-binding factor A [Clostridium perfringens E str. JGS1987]
gi|170661132|gb|EDT13815.1| ribosome-binding factor A [Clostridium perfringens E str. JGS1987]
Length = 116
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 60/109 (55%), Gaps = 5/109 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL--PLDVSP 68
R R+ EEVR + +I N RL + ++S+++V ++ DLR A V++SL D
Sbjct: 5 RGKRINEEVRKEVSDIIRNQIKDPRLTA--MVSVTQVEVTKDLRYAKVFVSLFAKNDEEK 62
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ + AL + FIR +G ++ LR PE+ F DTS+ + + +L+
Sbjct: 63 EESLKALKSSAGFIRREVGNRVK-LRSTPEILFEEDTSIDNAMYIESLL 110
>gi|283788205|ref|YP_003368070.1| ribosome-binding factor A [Citrobacter rodentium ICC168]
gi|182676606|sp|A9MP37|RBFA_SALAR RecName: Full=Ribosome-binding factor A
gi|282951659|emb|CBG91359.1| ribosome-binding factor A [Citrobacter rodentium ICC168]
Length = 133
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 61/115 (53%), Gaps = 6/115 (5%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
K R RV +E++ + +IL E +D + + ++S V MS DL A VY++ D
Sbjct: 3 KEFGRPQRVAQEMQKEI-AIILQREIKDPRLGM-MTTVSGVEMSRDLAYAKVYVTFLNDK 60
Query: 67 SPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
D V I AL FIR +G+++R LR VPEL F YD SL +++ L+
Sbjct: 61 DEDAVKAGIKALQEASGFIRSLLGKAMR-LRIVPELTFFYDNSLVEGMRMSNLVT 114
>gi|170765473|ref|ZP_02900284.1| ribosome-binding factor A [Escherichia albertii TW07627]
gi|170124619|gb|EDS93550.1| ribosome-binding factor A [Escherichia albertii TW07627]
Length = 133
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 61/115 (53%), Gaps = 6/115 (5%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
K R RV +E++ + +IL E +D + + ++S V MS DL A VY++ D
Sbjct: 3 KEFGRPQRVAQEMQKEI-AIILQREIKDPRLGM-MTTVSGVEMSRDLAYAKVYVTFLNDK 60
Query: 67 SPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
D V I AL FIR +G+++R LR VPEL F YD SL +++ L+
Sbjct: 61 DEDAVKAGIKALQEASGFIRSLLGKAMR-LRIVPELTFFYDNSLVEGMRMSNLVT 114
>gi|327441009|dbj|BAK17374.1| ribosome-binding factor A [Solibacillus silvestris StLB046]
Length = 114
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 61/110 (55%), Gaps = 5/110 (4%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI-SLPLDVS 67
S R+ RV E+++ + +I R+ +++++V ++ DL+ ATVYI SL D
Sbjct: 2 SLRSNRVAEQMKKEITEIIARKIKDPRV---GFVTVTDVAVTGDLQQATVYITSLGNDRE 58
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ AL FIR +G +R LR PEL F +DT+++ K++AL+
Sbjct: 59 RAETLQALEKASGFIRSEVGSRIR-LRRTPELAFEFDTAIEYGNKIDALL 107
>gi|315634098|ref|ZP_07889387.1| ribosome-binding factor A [Aggregatibacter segnis ATCC 33393]
gi|315477348|gb|EFU68091.1| ribosome-binding factor A [Aggregatibacter segnis ATCC 33393]
Length = 128
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 64/112 (57%), Gaps = 7/112 (6%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPD 69
+R+ RV +E++ + VIL E +D IS ++++S+V +S DL A V+++ D
Sbjct: 6 KRSDRVAQEIQKEI-AVILQREVKDPRIS--MVTVSDVEVSSDLAYAKVFVTFLFDHDEQ 62
Query: 70 RV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ + L +IR +G+++R LR VPE+RF YD SL +++ L+
Sbjct: 63 AIAQGMKGLEKAAPYIRTLLGKAMR-LRIVPEIRFIYDQSLVEGMRMSNLVT 113
>gi|57234294|ref|YP_181705.1| ribosome-binding factor A [Dehalococcoides ethenogenes 195]
gi|123618614|sp|Q3Z7U4|RBFA_DEHE1 RecName: Full=Ribosome-binding factor A
gi|57224742|gb|AAW39799.1| ribosome-binding factor A [Dehalococcoides ethenogenes 195]
Length = 118
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 65/111 (58%), Gaps = 6/111 (5%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQD-RLISRDVISISEVCMSVDLRVATVYIS-LPLDV 66
SRR ++ + R A + +L E +D RL + ++S++EV +S D+R ATVY+S L D
Sbjct: 2 SRRVKKLNQLFR-ADISALLQKEVRDPRLDT--LLSVNEVDVSEDMRHATVYVSHLAGDE 58
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
D +++ALN F R I + ++RY+P F +D +++ +LN L+
Sbjct: 59 HKDEILAALNAAAGFFRTEIAKKT-DIRYMPVFNFIWDDTIERGVRLNTLI 108
>gi|194014192|ref|ZP_03052809.1| ribosome-binding factor A [Bacillus pumilus ATCC 7061]
gi|194013218|gb|EDW22783.1| ribosome-binding factor A [Bacillus pumilus ATCC 7061]
Length = 116
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 61/111 (54%), Gaps = 5/111 (4%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
S RA RVGE+++ L IL + +D I +++++V ++ DL++A VYIS+ D
Sbjct: 2 SMRATRVGEQMKKEL-GDILGRKLKDPRIG--FLTVTDVEVTGDLQIAKVYISVLGDEKK 58
Query: 69 -DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ + L +IR IG +R LR PEL F +D S+ ++ +L+
Sbjct: 59 REETLKGLAKAKGYIRSEIGNRIR-LRKTPELHFEFDESVDYGNRIESLIA 108
>gi|304404294|ref|ZP_07385956.1| ribosome-binding factor A [Paenibacillus curdlanolyticus YK9]
gi|304347272|gb|EFM13104.1| ribosome-binding factor A [Paenibacillus curdlanolyticus YK9]
Length = 118
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 59/108 (54%), Gaps = 5/108 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
R RVGE+++ L +I E +D I I+++ V ++ DL A VY+S L D +
Sbjct: 5 RVGRVGEQIKKELSQII-QTELKDPRIG--FITVTGVDVTNDLSQAKVYLSVLGSDEQKE 61
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ A+ FIR +G+ +R LR+ P L F++D S+ ++ AL+
Sbjct: 62 ETLKAIARGTGFIRSELGKRMR-LRHTPVLLFKFDASIAYGSRIEALL 108
>gi|227499289|ref|ZP_03929401.1| ribosome-binding factor A [Anaerococcus tetradius ATCC 35098]
gi|227218640|gb|EEI83874.1| ribosome-binding factor A [Anaerococcus tetradius ATCC 35098]
Length = 125
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 62/112 (55%), Gaps = 2/112 (1%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDV 66
N RR R+ EV+ L ++ ++ RL + ++SI++V ++ DL A YIS L +
Sbjct: 2 NKRRTERISSEVKKELSKILRDDLSDPRLSNEAMVSITDVEVTNDLSFADCYISVLGDEQ 61
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ V+ AL+ +I+ IG +R LR +PE RF+ D S++ ++ L+
Sbjct: 62 KKEDVLDALDQAKGYIKILIGERMR-LRSMPEFRFKLDNSIEHGAYMDKLIA 112
>gi|161506149|ref|YP_001573261.1| ribosome-binding factor A [Salmonella enterica subsp. arizonae
serovar 62:z4,z23:-- str. RSK2980]
gi|160867496|gb|ABX24119.1| hypothetical protein SARI_04339 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 145
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 61/115 (53%), Gaps = 6/115 (5%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
K R RV +E++ + +IL E +D + + ++S V MS DL A VY++ D
Sbjct: 15 KEFGRPQRVAQEMQKEI-AIILQREIKDPRLGM-MTTVSGVEMSRDLAYAKVYVTFLNDK 72
Query: 67 SPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
D V I AL FIR +G+++R LR VPEL F YD SL +++ L+
Sbjct: 73 DEDAVKAGIKALQEASGFIRSLLGKAMR-LRIVPELTFFYDNSLVEGMRMSNLVT 126
>gi|117620712|ref|YP_857793.1| ribosome-binding factor A [Aeromonas hydrophila subsp. hydrophila
ATCC 7966]
gi|166218415|sp|A0KNE2|RBFA_AERHH RecName: Full=Ribosome-binding factor A
gi|117562119|gb|ABK39067.1| ribosome-binding factor A [Aeromonas hydrophila subsp. hydrophila
ATCC 7966]
Length = 144
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 66/112 (58%), Gaps = 8/112 (7%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
R RVG++++ + +IL E +D I ++++S+V +S DL A VY++ L L+ +
Sbjct: 7 RTRRVGQQIQREI-ALILQREVKDPRIG--MVTVSDVEVSRDLNYAKVYVTFLQLENDAE 63
Query: 70 RV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
R+ + AL +IR +G ++R LR VPELRF YD +L +L+ L+
Sbjct: 64 RIKEGLKALTEAAGYIRSLLGSAMR-LRVVPELRFFYDQTLVEGMRLSNLVT 114
>gi|50119660|ref|YP_048827.1| ribosome-binding factor A [Pectobacterium atrosepticum SCRI1043]
gi|261820129|ref|YP_003258235.1| ribosome-binding factor A [Pectobacterium wasabiae WPP163]
gi|61214938|sp|Q6D9A4|RBFA_ERWCT RecName: Full=Ribosome-binding factor A
gi|49610186|emb|CAG73628.1| ribosome-binding factor A [Pectobacterium atrosepticum SCRI1043]
gi|261604142|gb|ACX86628.1| ribosome-binding factor A [Pectobacterium wasabiae WPP163]
Length = 132
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 63/115 (54%), Gaps = 7/115 (6%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
K R RV +E++ + +I+ E +D I + ++S V +S DL A V+++ D
Sbjct: 3 KEFSRTQRVAQEMQKEI-AIIIQREVKDPRIG--MATVSGVEVSRDLAYAKVFVTFLNDN 59
Query: 67 SPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
P++V + AL FIR IG+++R LR VPEL F YD SL +++ L+
Sbjct: 60 EPEQVKIAVKALQDASGFIRMMIGKAMR-LRVVPELTFSYDNSLVEGMRMSNLVT 113
>gi|149909279|ref|ZP_01897935.1| ribosome-binding factor A [Moritella sp. PE36]
gi|149807596|gb|EDM67544.1| ribosome-binding factor A [Moritella sp. PE36]
Length = 141
Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 66/117 (56%), Gaps = 8/117 (6%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PL 64
K R+ RV ++++ + IL E +D I ++++S + +S DL A VY++ +
Sbjct: 2 AKEFSRSRRVAQQLQQEVAR-ILQREVKDPRIG--MVTVSSIDLSRDLSYAKVYVTFFNI 58
Query: 65 DVSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
D DRV I+AL +IR +G +++ LR VPELRF YD +L +L++L+
Sbjct: 59 DNDEDRVKEGIAALTAASGYIRSLVGSAMK-LRIVPELRFIYDNTLVEGMRLSSLVT 114
>gi|309389233|gb|ADO77113.1| ribosome-binding factor A [Halanaerobium praevalens DSM 2228]
Length = 127
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 62/103 (60%), Gaps = 5/103 (4%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDV 66
+++RA+RVGE ++ + ++L E +D I +SI++V +S DLR A V+IS+ +
Sbjct: 2 SNKRAVRVGELLKEEISQIVLR-EMKDPRIG--FVSITDVEVSGDLRHAKVFISVYGTEK 58
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQS 109
+ ++ L F+R +G ++ + + PE+ FRYD S+++
Sbjct: 59 EKEETLAGLQQAQGFVRKLVGERVK-IHHTPEIIFRYDDSIEN 100
>gi|157148736|ref|YP_001456055.1| ribosome-binding factor A [Citrobacter koseri ATCC BAA-895]
gi|166218429|sp|A8AQ56|RBFA_CITK8 RecName: Full=Ribosome-binding factor A
gi|157085941|gb|ABV15619.1| hypothetical protein CKO_04566 [Citrobacter koseri ATCC BAA-895]
Length = 133
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 61/115 (53%), Gaps = 6/115 (5%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
K R RV +E++ + +IL E +D + + ++S V MS DL A VY++ D
Sbjct: 3 KEFGRPQRVAQEMQKEI-AIILQREIKDPRLGM-MTTVSGVEMSRDLAYAKVYVTFLNDK 60
Query: 67 SPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
D V I AL FIR +G+++R LR VPEL F YD SL +++ L+
Sbjct: 61 DEDAVKAGIKALQEASGFIRTLLGKAMR-LRIVPELTFFYDNSLVEGMRMSNLVT 114
>gi|253682529|ref|ZP_04863326.1| ribosome-binding factor A [Clostridium botulinum D str. 1873]
gi|253562241|gb|EES91693.1| ribosome-binding factor A [Clostridium botulinum D str. 1873]
Length = 121
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 60/109 (55%), Gaps = 4/109 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDVSPD 69
R R+ EEVR + +I ++ RL + ++S++ V ++ DLR A V+IS+ + S +
Sbjct: 5 RLGRINEEVRKEISNIIRDDIHDPRLTA--MVSVTRVEVTNDLRYAKVFISIFGSNNSKE 62
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ AL + FIR +G ++ LRY PE+ D S++ +N L+
Sbjct: 63 ETLEALKSSAGFIRREVGHRVK-LRYTPEIVLELDESIEHGMHINDLLS 110
>gi|223044222|ref|ZP_03614259.1| ribosome-binding factor A [Staphylococcus capitis SK14]
gi|222442372|gb|EEE48480.1| ribosome-binding factor A [Staphylococcus capitis SK14]
Length = 116
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 57/99 (57%), Gaps = 5/99 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
RA RVGE+++ +M ++ NN+ +D + ++I++V ++ DL A VY++ L D
Sbjct: 5 RAERVGEQMKQEIMDIV-NNKVKDPRVG--FLTITDVELTNDLSHAKVYLTVLGSKKEVD 61
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
AL FI+ +G +R LR +P+L F YD S++
Sbjct: 62 NTFKALEKAKGFIKSELGSRMR-LRIIPDLTFEYDESIE 99
>gi|331002479|ref|ZP_08325997.1| ribosome-binding factor A [Lachnospiraceae oral taxon 107 str.
F0167]
gi|330410295|gb|EGG89729.1| ribosome-binding factor A [Lachnospiraceae oral taxon 107 str.
F0167]
Length = 123
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 62/112 (55%), Gaps = 4/112 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLD 65
KNS ++ + EV A+ I+ E +D ++ + S+++ ++ DL+ AT+Y+S L D
Sbjct: 3 KNSLKSTMINSEVMKAVSE-IMRGEVKDPRVA-PMTSVTDAEVTTDLKYATIYVSVLGDD 60
Query: 66 VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ ++ L + FIR + R L NLR PEL+F D SL K++ L+
Sbjct: 61 EQSKKTLAGLKSSSGFIRKELARRL-NLRNTPELKFVLDESLAYGMKMDKLI 111
>gi|332999246|gb|EGK18832.1| ribosome-binding factor A [Shigella flexneri K-272]
gi|333014968|gb|EGK34312.1| ribosome-binding factor A [Shigella flexneri K-227]
Length = 133
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 61/115 (53%), Gaps = 6/115 (5%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
K R RV +E++ + +IL E +D + + ++S V MS DL A VY++ D
Sbjct: 3 KEFGRPQRVAQEMQKEI-ALILQREIKDPRLGM-MTTVSSVEMSRDLAYAKVYVTFLNDK 60
Query: 67 SPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
D V I AL FIR +G+++R LR VPEL F YD SL +++ L+
Sbjct: 61 DEDAVKAGIKALQEASGFIRSLLGKAMR-LRIVPELTFFYDNSLVEGMRMSNLVT 114
>gi|187778990|ref|ZP_02995463.1| hypothetical protein CLOSPO_02585 [Clostridium sporogenes ATCC
15579]
gi|187772615|gb|EDU36417.1| hypothetical protein CLOSPO_02585 [Clostridium sporogenes ATCC
15579]
Length = 120
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 63/108 (58%), Gaps = 4/108 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDVSPD 69
RA R+ EEV+ + +I N+ RL + ++S+++V ++ DL+ A VY+S+ + + +
Sbjct: 5 RAGRINEEVKKEVSSIIHNDIKDPRLSA--MVSVTDVNVTKDLKYAKVYVSIFGNEKAKE 62
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ AL ++ FIR IGR ++ LR PE+ D S++ ++ L+
Sbjct: 63 ESLQALKSSVGFIRKEIGRRVK-LRNTPEVIIEVDNSIERGMHIDELL 109
>gi|170758382|ref|YP_001787728.1| ribosome-binding factor A [Clostridium botulinum A3 str. Loch
Maree]
gi|238688515|sp|B1KWK6|RBFA_CLOBM RecName: Full=Ribosome-binding factor A
gi|169405371|gb|ACA53782.1| ribosome-binding factor A [Clostridium botulinum A3 str. Loch
Maree]
Length = 120
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 63/108 (58%), Gaps = 4/108 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDVSPD 69
RA R+ EEV+ + +I N+ RL + ++S+++V ++ DL+ A VY+S+ + + +
Sbjct: 5 RAGRINEEVKKEVSSIIHNDIKDPRLSA--MVSVTDVDVTKDLKYAKVYVSIFGNEKAKE 62
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ AL ++ FIR IGR ++ LR PE+ D S++ ++ L+
Sbjct: 63 ESLQALKSSVGFIRKEIGRRVK-LRNTPEVIIEVDNSIERGMHIDELL 109
>gi|118444128|ref|YP_878208.1| ribosome-binding factor A [Clostridium novyi NT]
gi|166218434|sp|A0Q0Q6|RBFA_CLONN RecName: Full=Ribosome-binding factor A
gi|118134584|gb|ABK61628.1| ribosome-binding factor A [Clostridium novyi NT]
Length = 121
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 58/109 (53%), Gaps = 4/109 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDVSPD 69
R R+ EEV+ + +I ++ RL ++S++ V ++ DLR A V+IS+ D S
Sbjct: 5 RLGRINEEVKKEISNIIRDDIHDPRLTG--MVSVTRVEVTNDLRYAKVFISIFGSDESKT 62
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ AL + FIR +G ++ LRY PE+ D S++ +N L+
Sbjct: 63 ETLEALKSSAGFIRREVGHRVK-LRYTPEILLELDESIEHGMHINDLLS 110
>gi|228474959|ref|ZP_04059687.1| ribosome-binding factor A [Staphylococcus hominis SK119]
gi|314936569|ref|ZP_07843916.1| ribosome-binding factor A [Staphylococcus hominis subsp. hominis
C80]
gi|228270944|gb|EEK12332.1| ribosome-binding factor A [Staphylococcus hominis SK119]
gi|313655188|gb|EFS18933.1| ribosome-binding factor A [Staphylococcus hominis subsp. hominis
C80]
Length = 116
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 62/108 (57%), Gaps = 5/108 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
RA RVGE+++ +M +I NN+ +D + I+I++V ++ DL A V+++ L +
Sbjct: 5 RAERVGEQMKKEVMDII-NNKVKDPRVG--FITITDVELTNDLSQAKVFLTVLGNKKEVN 61
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
AL+ FI+ +G +R LR VPEL F YD S++ K+ ++
Sbjct: 62 DTFKALDKAKGFIKSELGSRMR-LRIVPELFFEYDESIEYGNKIEKMI 108
>gi|301156204|emb|CBW15675.1| 30s ribosome binding factor [Haemophilus parainfluenzae T3T1]
Length = 128
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 65/112 (58%), Gaps = 7/112 (6%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD---V 66
+R+ RV +E++ + IL E +D I ++++S+V +S DL A V+++ D V
Sbjct: 6 KRSDRVAQELQKEI-ATILQREVKDPRIG--MVTVSDVEVSSDLAYAKVFVTFLFDHDEV 62
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ ++ + L +IR +G+++R LR VPE+RF YD SL +++ L+
Sbjct: 63 AIEQGMKGLEKAAPYIRSLVGKAMR-LRIVPEIRFFYDQSLVEGMRMSNLVT 113
>gi|300897931|ref|ZP_07116310.1| ribosome-binding factor A [Escherichia coli MS 198-1]
gi|301022022|ref|ZP_07185965.1| ribosome-binding factor A [Escherichia coli MS 69-1]
gi|284923191|emb|CBG36285.1| ribosome-binding factor A [Escherichia coli 042]
gi|300358361|gb|EFJ74231.1| ribosome-binding factor A [Escherichia coli MS 198-1]
gi|300397737|gb|EFJ81275.1| ribosome-binding factor A [Escherichia coli MS 69-1]
Length = 143
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 61/115 (53%), Gaps = 6/115 (5%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
K R RV +E++ + +IL E +D + + ++S V MS DL A VY++ D
Sbjct: 13 KEFGRPQRVAQEMQKEI-ALILQREIKDPRLGM-MTTVSGVEMSRDLAYAKVYVTFLNDK 70
Query: 67 SPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
D V I AL FIR +G+++R LR VPEL F YD SL +++ L+
Sbjct: 71 DEDAVKAGIKALQEASGFIRSLLGKAMR-LRIVPELTFFYDNSLVEGMRMSNLVT 124
>gi|229520935|ref|ZP_04410357.1| ribosome-binding factor A [Vibrio cholerae TM 11079-80]
gi|229342168|gb|EEO07164.1| ribosome-binding factor A [Vibrio cholerae TM 11079-80]
Length = 136
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 68/120 (56%), Gaps = 6/120 (5%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
M+N PK R RV ++++ L +IL E +D + +++IS+V +S DL A V++
Sbjct: 1 MRNDMPKEFSRTQRVAQQLQKEL-AMILQREVRDSRLG--MVTISDVEVSRDLAYAKVFV 57
Query: 61 SLPL--DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ + +P+ ++AL + IR +G+ +R LR PE+RF YD +L +++ L+
Sbjct: 58 TFLCIGEQTPESCLAALREHEVQIRMMLGKQIR-LRLTPEIRFYYDNTLVEGMRMSNLVT 116
>gi|237706080|ref|ZP_04536561.1| ribosome-binding factor A [Escherichia sp. 3_2_53FAA]
gi|254038333|ref|ZP_04872391.1| ribosome-binding factor A [Escherichia sp. 1_1_43]
gi|293412542|ref|ZP_06655265.1| ribosome-binding factor A [Escherichia coli B354]
gi|293416600|ref|ZP_06659239.1| ribosome-binding factor A [Escherichia coli B185]
gi|332280002|ref|ZP_08392415.1| ribosome-binding factor A [Shigella sp. D9]
gi|26110178|gb|AAN82364.1|AE016767_124 Ribosome-binding factor A [Escherichia coli CFT073]
gi|91074162|gb|ABE09043.1| ribosome-binding factor A [Escherichia coli UTI89]
gi|226839957|gb|EEH71978.1| ribosome-binding factor A [Escherichia sp. 1_1_43]
gi|226899120|gb|EEH85379.1| ribosome-binding factor A [Escherichia sp. 3_2_53FAA]
gi|291431956|gb|EFF04939.1| ribosome-binding factor A [Escherichia coli B185]
gi|291469313|gb|EFF11804.1| ribosome-binding factor A [Escherichia coli B354]
gi|332102354|gb|EGJ05700.1| ribosome-binding factor A [Shigella sp. D9]
Length = 139
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 61/115 (53%), Gaps = 6/115 (5%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
K R RV +E++ + +IL E +D + + ++S V MS DL A VY++ D
Sbjct: 9 KEFGRPQRVAQEMQKEI-ALILQREIKDPRLGM-MTTVSGVEMSRDLAYAKVYVTFLNDK 66
Query: 67 SPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
D V I AL FIR +G+++R LR VPEL F YD SL +++ L+
Sbjct: 67 DEDAVKAGIKALQEASGFIRSLLGKAMR-LRIVPELTFFYDNSLVEGMRMSNLVT 120
>gi|331648968|ref|ZP_08350056.1| ribosome-binding factor A [Escherichia coli M605]
gi|331042715|gb|EGI14857.1| ribosome-binding factor A [Escherichia coli M605]
Length = 133
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 61/115 (53%), Gaps = 6/115 (5%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
K R RV +E++ + +IL E +D + + ++S V MS DL A VY++ D
Sbjct: 3 KEFDRPQRVAQEMQKEI-ALILQREIKDPRLGM-MTTVSGVEMSRDLAYAKVYVTFLNDK 60
Query: 67 SPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
D V I AL FIR +G+++R LR VPEL F YD SL +++ L+
Sbjct: 61 DEDAVKAGIKALQEASGFIRSLLGKAMR-LRIVPELTFFYDNSLVEGMRMSNLVT 114
>gi|332799225|ref|YP_004460724.1| Ribosome-binding factor A [Tepidanaerobacter sp. Re1]
gi|332696960|gb|AEE91417.1| Ribosome-binding factor A [Tepidanaerobacter sp. Re1]
Length = 123
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 60/108 (55%), Gaps = 4/108 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP-D 69
R R+ EE++ + +I N++ +D I +IS+++V ++ DL ATV+IS D + D
Sbjct: 5 RNERIAEEIKKGISEII-NSDLKDPRIE-GLISVTKVKVTKDLGHATVFISFYGDKTKRD 62
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ FIR + +R ++Y+PEL FR D S++ +N L+
Sbjct: 63 TTFDVIQNAKNFIRHELASKIR-IKYMPELSFRIDESIEYGIHINKLL 109
>gi|121587846|ref|ZP_01677603.1| ribosome-binding factor A [Vibrio cholerae 2740-80]
gi|121728384|ref|ZP_01681412.1| ribosome-binding factor A [Vibrio cholerae V52]
gi|147673152|ref|YP_001216138.1| ribosome-binding factor A [Vibrio cholerae O395]
gi|153215853|ref|ZP_01950185.1| ribosome-binding factor A [Vibrio cholerae 1587]
gi|153802002|ref|ZP_01956588.1| ribosome-binding factor A [Vibrio cholerae MZO-3]
gi|153818692|ref|ZP_01971359.1| ribosome-binding factor A [Vibrio cholerae NCTC 8457]
gi|153822541|ref|ZP_01975208.1| ribosome-binding factor A [Vibrio cholerae B33]
gi|153826508|ref|ZP_01979175.1| ribosome-binding factor A [Vibrio cholerae MZO-2]
gi|153829183|ref|ZP_01981850.1| ribosome-binding factor A [Vibrio cholerae 623-39]
gi|227080825|ref|YP_002809376.1| ribosome-binding factor A [Vibrio cholerae M66-2]
gi|229505734|ref|ZP_04395244.1| ribosome-binding factor A [Vibrio cholerae BX 330286]
gi|229509233|ref|ZP_04398718.1| ribosome-binding factor A [Vibrio cholerae B33]
gi|229512906|ref|ZP_04402373.1| ribosome-binding factor A [Vibrio cholerae TMA 21]
gi|229530449|ref|ZP_04419837.1| ribosome-binding factor A [Vibrio cholerae 12129(1)]
gi|229608845|ref|YP_002879493.1| ribosome-binding factor A [Vibrio cholerae MJ-1236]
gi|254226549|ref|ZP_04920132.1| ribosome-binding factor A [Vibrio cholerae V51]
gi|254291883|ref|ZP_04962665.1| ribosome-binding factor A [Vibrio cholerae AM-19226]
gi|254850878|ref|ZP_05240228.1| ribosome-binding factor A [Vibrio cholerae MO10]
gi|297580770|ref|ZP_06942696.1| ribosome-binding factor A [Vibrio cholerae RC385]
gi|298500760|ref|ZP_07010563.1| ribosome-binding factor A [Vibrio cholerae MAK 757]
gi|9655080|gb|AAF93810.1| ribosome-binding factor A [Vibrio cholerae O1 biovar El Tor str.
N16961]
gi|121547882|gb|EAX57966.1| ribosome-binding factor A [Vibrio cholerae 2740-80]
gi|121629318|gb|EAX61750.1| ribosome-binding factor A [Vibrio cholerae V52]
gi|124114570|gb|EAY33390.1| ribosome-binding factor A [Vibrio cholerae 1587]
gi|124122461|gb|EAY41204.1| ribosome-binding factor A [Vibrio cholerae MZO-3]
gi|125620953|gb|EAZ49304.1| ribosome-binding factor A [Vibrio cholerae V51]
gi|126510772|gb|EAZ73366.1| ribosome-binding factor A [Vibrio cholerae NCTC 8457]
gi|126519959|gb|EAZ77182.1| ribosome-binding factor A [Vibrio cholerae B33]
gi|146315035|gb|ABQ19574.1| ribosome-binding factor A [Vibrio cholerae O395]
gi|148875372|gb|EDL73507.1| ribosome-binding factor A [Vibrio cholerae 623-39]
gi|149739688|gb|EDM53895.1| ribosome-binding factor A [Vibrio cholerae MZO-2]
gi|150422169|gb|EDN14134.1| ribosome-binding factor A [Vibrio cholerae AM-19226]
gi|227008713|gb|ACP04925.1| ribosome-binding factor A [Vibrio cholerae M66-2]
gi|227012469|gb|ACP08679.1| ribosome-binding factor A [Vibrio cholerae O395]
gi|229332222|gb|EEN97710.1| ribosome-binding factor A [Vibrio cholerae 12129(1)]
gi|229350155|gb|EEO15108.1| ribosome-binding factor A [Vibrio cholerae TMA 21]
gi|229353805|gb|EEO18741.1| ribosome-binding factor A [Vibrio cholerae B33]
gi|229357957|gb|EEO22874.1| ribosome-binding factor A [Vibrio cholerae BX 330286]
gi|229371500|gb|ACQ61923.1| ribosome-binding factor A [Vibrio cholerae MJ-1236]
gi|254846583|gb|EET24997.1| ribosome-binding factor A [Vibrio cholerae MO10]
gi|297535186|gb|EFH74021.1| ribosome-binding factor A [Vibrio cholerae RC385]
gi|297540541|gb|EFH76599.1| ribosome-binding factor A [Vibrio cholerae MAK 757]
Length = 136
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 68/120 (56%), Gaps = 6/120 (5%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
M+N PK R RV ++++ L +IL E +D + +++IS+V +S DL A V++
Sbjct: 1 MRNDMPKEFSRTQRVAQQLQKEL-AMILQREVRDSRLG--MVTISDVEVSRDLAYAKVFV 57
Query: 61 SLPL--DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ + +P+ ++AL + IR +G+ +R LR PE+RF YD +L +++ L+
Sbjct: 58 TFLCIGEQTPESCLAALREHEVQIRMMLGKQIR-LRLTPEIRFYYDNTLVEGMRMSNLVT 116
>gi|258404626|ref|YP_003197368.1| ribosome-binding factor A [Desulfohalobium retbaense DSM 5692]
gi|257796853|gb|ACV67790.1| ribosome-binding factor A [Desulfohalobium retbaense DSM 5692]
Length = 120
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 60/103 (58%), Gaps = 5/103 (4%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS 67
+RRA R+G+ + + +++ RL +++IS V M+ +L+VA V + P
Sbjct: 5 TTRRAQRMGDTIMREIGHLLVEEAKDPRL---QLVTISGVRMNRNLQVAEVLFTHPEGRD 61
Query: 68 PDR-VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQS 109
++ +I+AL F+R +G+ LR LR+VP+LRF +DT L+
Sbjct: 62 KEQEIITALESASGFLRTALGKRLR-LRFVPQLRFTWDTFLED 103
>gi|215488485|ref|YP_002330916.1| ribosome-binding factor A [Escherichia coli O127:H6 str. E2348/69]
gi|312968494|ref|ZP_07782703.1| ribosome-binding factor A [Escherichia coli 2362-75]
gi|254789748|sp|B7UJ62|RBFA_ECO27 RecName: Full=Ribosome-binding factor A
gi|215266557|emb|CAS10996.1| 30s ribosome binding factor RbfA [Escherichia coli O127:H6 str.
E2348/69]
gi|312286712|gb|EFR14623.1| ribosome-binding factor A [Escherichia coli 2362-75]
Length = 133
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 61/115 (53%), Gaps = 6/115 (5%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
K R RV +E++ + +IL E +D + + ++S V MS DL A VY++ D
Sbjct: 3 KEFGRPQRVAQEMQKEI-ALILQREIKDPRLGM-MTTVSGVEMSRDLAYAKVYVTFLNDK 60
Query: 67 SPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
D V I AL FIR +G+++R LR VPEL F YD SL +++ L+
Sbjct: 61 DEDAVKAGIKALQEASGFIRSLLGKAMR-LRIVPELTFFYDNSLVEGMRMSNLVT 114
>gi|15803709|ref|NP_289743.1| ribosome-binding factor A [Escherichia coli O157:H7 EDL933]
gi|15833302|ref|NP_312075.1| ribosome-binding factor A [Escherichia coli O157:H7 str. Sakai]
gi|16131059|ref|NP_417636.1| 30s ribosome binding factor [Escherichia coli str. K-12 substr.
MG1655]
gi|30064507|ref|NP_838678.1| ribosome-binding factor A [Shigella flexneri 2a str. 2457T]
gi|56480279|ref|NP_708968.2| ribosome-binding factor A [Shigella flexneri 2a str. 301]
gi|74313704|ref|YP_312123.1| ribosome-binding factor A [Shigella sonnei Ss046]
gi|82545593|ref|YP_409540.1| ribosome-binding factor A [Shigella boydii Sb227]
gi|82778481|ref|YP_404830.1| ribosome-binding factor A [Shigella dysenteriae Sd197]
gi|89109932|ref|AP_003712.1| 30s ribosome binding factor [Escherichia coli str. K-12 substr.
W3110]
gi|110643408|ref|YP_671138.1| ribosome-binding factor A [Escherichia coli 536]
gi|110807036|ref|YP_690556.1| ribosome-binding factor A [Shigella flexneri 5 str. 8401]
gi|117625463|ref|YP_858786.1| ribosome-binding factor A [Escherichia coli APEC O1]
gi|157154949|ref|YP_001464643.1| ribosome-binding factor A [Escherichia coli E24377A]
gi|157162652|ref|YP_001459970.1| ribosome-binding factor A [Escherichia coli HS]
gi|161486110|ref|NP_755790.2| ribosome-binding factor A [Escherichia coli CFT073]
gi|162138367|ref|YP_542574.2| ribosome-binding factor A [Escherichia coli UTI89]
gi|168749237|ref|ZP_02774259.1| ribosome-binding factor A [Escherichia coli O157:H7 str. EC4113]
gi|168754148|ref|ZP_02779155.1| ribosome-binding factor A [Escherichia coli O157:H7 str. EC4401]
gi|168762133|ref|ZP_02787140.1| ribosome-binding factor A [Escherichia coli O157:H7 str. EC4501]
gi|168769585|ref|ZP_02794592.1| ribosome-binding factor A [Escherichia coli O157:H7 str. EC4486]
gi|168773166|ref|ZP_02798173.1| ribosome-binding factor A [Escherichia coli O157:H7 str. EC4196]
gi|168781310|ref|ZP_02806317.1| ribosome-binding factor A [Escherichia coli O157:H7 str. EC4076]
gi|168786052|ref|ZP_02811059.1| ribosome-binding factor A [Escherichia coli O157:H7 str. EC869]
gi|168797768|ref|ZP_02822775.1| ribosome-binding factor A [Escherichia coli O157:H7 str. EC508]
gi|170018581|ref|YP_001723535.1| ribosome-binding factor A [Escherichia coli ATCC 8739]
gi|170082704|ref|YP_001732024.1| 30s ribosome binding factor [Escherichia coli str. K-12 substr.
DH10B]
gi|170680547|ref|YP_001745441.1| ribosome-binding factor A [Escherichia coli SMS-3-5]
gi|187731087|ref|YP_001881916.1| ribosome-binding factor A [Shigella boydii CDC 3083-94]
gi|188492975|ref|ZP_03000245.1| ribosome-binding factor A [Escherichia coli 53638]
gi|191168041|ref|ZP_03029841.1| ribosome-binding factor A [Escherichia coli B7A]
gi|191172235|ref|ZP_03033778.1| ribosome-binding factor A [Escherichia coli F11]
gi|193062103|ref|ZP_03043199.1| ribosome-binding factor A [Escherichia coli E22]
gi|193067230|ref|ZP_03048198.1| ribosome-binding factor A [Escherichia coli E110019]
gi|194427732|ref|ZP_03060279.1| ribosome-binding factor A [Escherichia coli B171]
gi|194433785|ref|ZP_03066060.1| ribosome-binding factor A [Shigella dysenteriae 1012]
gi|194438794|ref|ZP_03070880.1| ribosome-binding factor A [Escherichia coli 101-1]
gi|195938387|ref|ZP_03083769.1| ribosome-binding factor A [Escherichia coli O157:H7 str. EC4024]
gi|208807175|ref|ZP_03249512.1| ribosome-binding factor A [Escherichia coli O157:H7 str. EC4206]
gi|208814431|ref|ZP_03255760.1| ribosome-binding factor A [Escherichia coli O157:H7 str. EC4045]
gi|208819440|ref|ZP_03259760.1| ribosome-binding factor A [Escherichia coli O157:H7 str. EC4042]
gi|209397218|ref|YP_002272638.1| ribosome-binding factor A [Escherichia coli O157:H7 str. EC4115]
gi|209920644|ref|YP_002294728.1| ribosome-binding factor A [Escherichia coli SE11]
gi|217327738|ref|ZP_03443821.1| ribosome-binding factor A [Escherichia coli O157:H7 str. TW14588]
gi|218550452|ref|YP_002384243.1| ribosome-binding factor A [Escherichia fergusonii ATCC 35469]
gi|218555739|ref|YP_002388652.1| ribosome-binding factor A [Escherichia coli IAI1]
gi|218560239|ref|YP_002393152.1| ribosome-binding factor A [Escherichia coli S88]
gi|218691459|ref|YP_002399671.1| ribosome-binding factor A [Escherichia coli ED1a]
gi|218696874|ref|YP_002404541.1| ribosome-binding factor A [Escherichia coli 55989]
gi|218701938|ref|YP_002409567.1| ribosome-binding factor A [Escherichia coli IAI39]
gi|218706789|ref|YP_002414308.1| ribosome-binding factor A [Escherichia coli UMN026]
gi|227887890|ref|ZP_04005695.1| ribosome binding factor A [Escherichia coli 83972]
gi|238902271|ref|YP_002928067.1| 30s ribosome binding factor [Escherichia coli BW2952]
gi|253771997|ref|YP_003034828.1| ribosome-binding factor A [Escherichia coli 'BL21-Gold(DE3)pLysS
AG']
gi|254163111|ref|YP_003046219.1| ribosome-binding factor A [Escherichia coli B str. REL606]
gi|254795118|ref|YP_003079955.1| ribosome-binding factor A [Escherichia coli O157:H7 str. TW14359]
gi|256018913|ref|ZP_05432778.1| ribosome-binding factor A [Shigella sp. D9]
gi|256024257|ref|ZP_05438122.1| ribosome-binding factor A [Escherichia sp. 4_1_40B]
gi|260845982|ref|YP_003223760.1| 30S ribosome binding factor RbfA [Escherichia coli O103:H2 str.
12009]
gi|260857296|ref|YP_003231187.1| 30S ribosome binding factor RbfA [Escherichia coli O26:H11 str.
11368]
gi|260869919|ref|YP_003236321.1| 30S ribosome binding factor RbfA [Escherichia coli O111:H- str.
11128]
gi|261228179|ref|ZP_05942460.1| 30s ribosome binding factor [Escherichia coli O157:H7 str.
FRIK2000]
gi|261255035|ref|ZP_05947568.1| 30S ribosome binding factor RbfA [Escherichia coli O157:H7 str.
FRIK966]
gi|291284543|ref|YP_003501361.1| Ribosome-binding factor A [Escherichia coli O55:H7 str. CB9615]
gi|293406779|ref|ZP_06650705.1| ribosome-binding factor A [Escherichia coli FVEC1412]
gi|293449503|ref|ZP_06663924.1| ribosome-binding factor A [Escherichia coli B088]
gi|298382519|ref|ZP_06992116.1| ribosome-binding factor A [Escherichia coli FVEC1302]
gi|300817581|ref|ZP_07097797.1| ribosome-binding factor A [Escherichia coli MS 107-1]
gi|300823870|ref|ZP_07103994.1| ribosome-binding factor A [Escherichia coli MS 119-7]
gi|300904353|ref|ZP_07122206.1| ribosome-binding factor A [Escherichia coli MS 84-1]
gi|300918922|ref|ZP_07135481.1| ribosome-binding factor A [Escherichia coli MS 115-1]
gi|300926094|ref|ZP_07141912.1| ribosome-binding factor A [Escherichia coli MS 182-1]
gi|300929857|ref|ZP_07145303.1| ribosome-binding factor A [Escherichia coli MS 187-1]
gi|300938077|ref|ZP_07152855.1| ribosome-binding factor A [Escherichia coli MS 21-1]
gi|300948817|ref|ZP_07162885.1| ribosome-binding factor A [Escherichia coli MS 116-1]
gi|300955753|ref|ZP_07168098.1| ribosome-binding factor A [Escherichia coli MS 175-1]
gi|300977834|ref|ZP_07174074.1| ribosome-binding factor A [Escherichia coli MS 200-1]
gi|300990767|ref|ZP_07179339.1| ribosome-binding factor A [Escherichia coli MS 45-1]
gi|301025988|ref|ZP_07189470.1| ribosome-binding factor A [Escherichia coli MS 196-1]
gi|301047990|ref|ZP_07195032.1| ribosome-binding factor A [Escherichia coli MS 185-1]
gi|301301777|ref|ZP_07207911.1| ribosome-binding factor A [Escherichia coli MS 124-1]
gi|301326410|ref|ZP_07219764.1| ribosome-binding factor A [Escherichia coli MS 78-1]
gi|301644878|ref|ZP_07244850.1| ribosome-binding factor A [Escherichia coli MS 146-1]
gi|306816489|ref|ZP_07450621.1| ribosome-binding factor A [Escherichia coli NC101]
gi|307139854|ref|ZP_07499210.1| ribosome-binding factor A [Escherichia coli H736]
gi|307313126|ref|ZP_07592752.1| ribosome-binding factor A [Escherichia coli W]
gi|309785494|ref|ZP_07680125.1| ribosome-binding factor A [Shigella dysenteriae 1617]
gi|309793745|ref|ZP_07688171.1| ribosome-binding factor A [Escherichia coli MS 145-7]
gi|312972561|ref|ZP_07786734.1| ribosome-binding factor A [Escherichia coli 1827-70]
gi|331643867|ref|ZP_08344998.1| ribosome-binding factor A [Escherichia coli H736]
gi|331654773|ref|ZP_08355773.1| ribosome-binding factor A [Escherichia coli M718]
gi|331659456|ref|ZP_08360398.1| ribosome-binding factor A [Escherichia coli TA206]
gi|331664781|ref|ZP_08365686.1| ribosome-binding factor A [Escherichia coli TA143]
gi|331669996|ref|ZP_08370841.1| ribosome-binding factor A [Escherichia coli TA271]
gi|331674705|ref|ZP_08375464.1| ribosome-binding factor A [Escherichia coli TA280]
gi|331679248|ref|ZP_08379920.1| ribosome-binding factor A [Escherichia coli H591]
gi|331684816|ref|ZP_08385408.1| ribosome-binding factor A [Escherichia coli H299]
gi|67471971|sp|P0A7G2|RBFA_ECOLI RecName: Full=Ribosome-binding factor A; AltName: Full=Protein P15B
gi|67471972|sp|P0A7G3|RBFA_ECOL6 RecName: Full=Ribosome-binding factor A
gi|67471973|sp|P0A7G4|RBFA_ECO57 RecName: Full=Ribosome-binding factor A
gi|67471974|sp|P0A7G5|RBFA_SHIFL RecName: Full=Ribosome-binding factor A
gi|123147649|sp|Q0TCU2|RBFA_ECOL5 RecName: Full=Ribosome-binding factor A
gi|123342479|sp|Q0T0B4|RBFA_SHIF8 RecName: Full=Ribosome-binding factor A
gi|123558564|sp|Q31W46|RBFA_SHIBS RecName: Full=Ribosome-binding factor A
gi|123561526|sp|Q32BG6|RBFA_SHIDS RecName: Full=Ribosome-binding factor A
gi|123616074|sp|Q3YX74|RBFA_SHISS RecName: Full=Ribosome-binding factor A
gi|166218437|sp|A1AG72|RBFA_ECOK1 RecName: Full=Ribosome-binding factor A
gi|166918674|sp|A7ZS64|RBFA_ECO24 RecName: Full=Ribosome-binding factor A
gi|166918675|sp|A8A4Y3|RBFA_ECOHS RecName: Full=Ribosome-binding factor A
gi|172046242|sp|Q1R6H1|RBFA_ECOUT RecName: Full=Ribosome-binding factor A
gi|189039540|sp|B1IQV4|RBFA_ECOLC RecName: Full=Ribosome-binding factor A
gi|226723599|sp|B1XGX9|RBFA_ECODH RecName: Full=Ribosome-binding factor A
gi|226723600|sp|B6I1P2|RBFA_ECOSE RecName: Full=Ribosome-binding factor A
gi|226736644|sp|B7MB88|RBFA_ECO45 RecName: Full=Ribosome-binding factor A
gi|226736645|sp|B7NKN6|RBFA_ECO7I RecName: Full=Ribosome-binding factor A
gi|226736646|sp|B7M075|RBFA_ECO8A RecName: Full=Ribosome-binding factor A
gi|226736647|sp|B7NDF3|RBFA_ECOLU RecName: Full=Ribosome-binding factor A
gi|226736648|sp|B1LFR9|RBFA_ECOSM RecName: Full=Ribosome-binding factor A
gi|226736649|sp|B7LR36|RBFA_ESCF3 RecName: Full=Ribosome-binding factor A
gi|238058487|sp|B5YS57|RBFA_ECO5E RecName: Full=Ribosome-binding factor A
gi|238691777|sp|B2U208|RBFA_SHIB3 RecName: Full=Ribosome-binding factor A
gi|254789749|sp|B7LHN2|RBFA_ECO55 RecName: Full=Ribosome-binding factor A
gi|254789750|sp|B7N0V2|RBFA_ECO81 RecName: Full=Ribosome-binding factor A
gi|259551972|sp|C4ZSQ8|RBFA_ECOBW RecName: Full=Ribosome-binding factor A
gi|12517778|gb|AAG58303.1|AE005545_5 ribosome-binding factor A [Escherichia coli O157:H7 str. EDL933]
gi|42218|emb|CAA32020.1| P15B gene product (AA 1 - 133) [Escherichia coli]
gi|42222|emb|CAA31634.1| unnamed protein product [Escherichia coli]
gi|606107|gb|AAA57970.1| P15B [Escherichia coli str. K-12 substr. MG1655]
gi|1789558|gb|AAC76201.1| 30s ribosome binding factor [Escherichia coli str. K-12 substr.
MG1655]
gi|13363521|dbj|BAB37471.1| ribosome-binding factor A [Escherichia coli O157:H7 str. Sakai]
gi|30042766|gb|AAP18489.1| ribosome-binding factor A [Shigella flexneri 2a str. 2457T]
gi|56383830|gb|AAN44675.2| ribosome-binding factor A [Shigella flexneri 2a str. 301]
gi|73857181|gb|AAZ89888.1| ribosome-binding factor A [Shigella sonnei Ss046]
gi|81242629|gb|ABB63339.1| ribosome-binding factor A [Shigella dysenteriae Sd197]
gi|81247004|gb|ABB67712.1| ribosome-binding factor A [Shigella boydii Sb227]
gi|85675963|dbj|BAE77213.1| 30s ribosome binding factor [Escherichia coli str. K12 substr.
W3110]
gi|110345000|gb|ABG71237.1| ribosome-binding factor A [Escherichia coli 536]
gi|110616584|gb|ABF05251.1| ribosome-binding factor A [Shigella flexneri 5 str. 8401]
gi|115514587|gb|ABJ02662.1| ribosome-binding factor A [Escherichia coli APEC O1]
gi|157068332|gb|ABV07587.1| ribosome-binding factor A [Escherichia coli HS]
gi|157076979|gb|ABV16687.1| ribosome-binding factor A [Escherichia coli E24377A]
gi|169753509|gb|ACA76208.1| ribosome-binding factor A [Escherichia coli ATCC 8739]
gi|169890539|gb|ACB04246.1| 30s ribosome binding factor [Escherichia coli str. K-12 substr.
DH10B]
gi|170518265|gb|ACB16443.1| ribosome-binding factor A [Escherichia coli SMS-3-5]
gi|187428079|gb|ACD07353.1| ribosome-binding factor A [Shigella boydii CDC 3083-94]
gi|187770833|gb|EDU34677.1| ribosome-binding factor A [Escherichia coli O157:H7 str. EC4196]
gi|188016404|gb|EDU54526.1| ribosome-binding factor A [Escherichia coli O157:H7 str. EC4113]
gi|188488174|gb|EDU63277.1| ribosome-binding factor A [Escherichia coli 53638]
gi|189001131|gb|EDU70117.1| ribosome-binding factor A [Escherichia coli O157:H7 str. EC4076]
gi|189358437|gb|EDU76856.1| ribosome-binding factor A [Escherichia coli O157:H7 str. EC4401]
gi|189361487|gb|EDU79906.1| ribosome-binding factor A [Escherichia coli O157:H7 str. EC4486]
gi|189367587|gb|EDU86003.1| ribosome-binding factor A [Escherichia coli O157:H7 str. EC4501]
gi|189373921|gb|EDU92337.1| ribosome-binding factor A [Escherichia coli O157:H7 str. EC869]
gi|189379719|gb|EDU98135.1| ribosome-binding factor A [Escherichia coli O157:H7 str. EC508]
gi|190901910|gb|EDV61659.1| ribosome-binding factor A [Escherichia coli B7A]
gi|190907545|gb|EDV67141.1| ribosome-binding factor A [Escherichia coli F11]
gi|192932323|gb|EDV84921.1| ribosome-binding factor A [Escherichia coli E22]
gi|192959187|gb|EDV89622.1| ribosome-binding factor A [Escherichia coli E110019]
gi|194414240|gb|EDX30515.1| ribosome-binding factor A [Escherichia coli B171]
gi|194418048|gb|EDX34142.1| ribosome-binding factor A [Shigella dysenteriae 1012]
gi|194422266|gb|EDX38267.1| ribosome-binding factor A [Escherichia coli 101-1]
gi|208726976|gb|EDZ76577.1| ribosome-binding factor A [Escherichia coli O157:H7 str. EC4206]
gi|208735708|gb|EDZ84395.1| ribosome-binding factor A [Escherichia coli O157:H7 str. EC4045]
gi|208739563|gb|EDZ87245.1| ribosome-binding factor A [Escherichia coli O157:H7 str. EC4042]
gi|209158618|gb|ACI36051.1| ribosome-binding factor A [Escherichia coli O157:H7 str. EC4115]
gi|209758348|gb|ACI77486.1| ribosome-binding factor A [Escherichia coli]
gi|209758350|gb|ACI77487.1| ribosome-binding factor A [Escherichia coli]
gi|209758352|gb|ACI77488.1| ribosome-binding factor A [Escherichia coli]
gi|209758354|gb|ACI77489.1| ribosome-binding factor A [Escherichia coli]
gi|209758356|gb|ACI77490.1| ribosome-binding factor A [Escherichia coli]
gi|209913903|dbj|BAG78977.1| ribosome-binding factor A [Escherichia coli SE11]
gi|217320105|gb|EEC28530.1| ribosome-binding factor A [Escherichia coli O157:H7 str. TW14588]
gi|218353606|emb|CAU99796.1| 30s ribosome binding factor [Escherichia coli 55989]
gi|218357993|emb|CAQ90639.1| 30s ribosome binding factor [Escherichia fergusonii ATCC 35469]
gi|218362507|emb|CAR00131.1| 30s ribosome binding factor [Escherichia coli IAI1]
gi|218367008|emb|CAR04779.1| 30s ribosome binding factor [Escherichia coli S88]
gi|218371924|emb|CAR19780.1| 30s ribosome binding factor [Escherichia coli IAI39]
gi|218429023|emb|CAR09970.2| 30s ribosome binding factor [Escherichia coli ED1a]
gi|218433886|emb|CAR14803.1| 30s ribosome binding factor [Escherichia coli UMN026]
gi|222034886|emb|CAP77629.1| ribosome-binding factor A [Escherichia coli LF82]
gi|227835286|gb|EEJ45752.1| ribosome binding factor A [Escherichia coli 83972]
gi|238859805|gb|ACR61803.1| 30s ribosome binding factor [Escherichia coli BW2952]
gi|242378712|emb|CAQ33502.1| 30S ribosome binding factor [Escherichia coli BL21(DE3)]
gi|253323041|gb|ACT27643.1| ribosome-binding factor A [Escherichia coli 'BL21-Gold(DE3)pLysS
AG']
gi|253975012|gb|ACT40683.1| ribosome-binding factor A [Escherichia coli B str. REL606]
gi|253979168|gb|ACT44838.1| ribosome-binding factor A [Escherichia coli BL21(DE3)]
gi|254594518|gb|ACT73879.1| 30s ribosome binding factor [Escherichia coli O157:H7 str. TW14359]
gi|257755945|dbj|BAI27447.1| 30S ribosome binding factor RbfA [Escherichia coli O26:H11 str.
11368]
gi|257761129|dbj|BAI32626.1| 30S ribosome binding factor RbfA [Escherichia coli O103:H2 str.
12009]
gi|257766275|dbj|BAI37770.1| 30S ribosome binding factor RbfA [Escherichia coli O111:H- str.
11128]
gi|260447804|gb|ACX38226.1| ribosome-binding factor A [Escherichia coli DH1]
gi|281180211|dbj|BAI56541.1| ribosome-binding factor A [Escherichia coli SE15]
gi|281602551|gb|ADA75535.1| Ribosome-binding factor A [Shigella flexneri 2002017]
gi|290764416|gb|ADD58377.1| Ribosome-binding factor A [Escherichia coli O55:H7 str. CB9615]
gi|291322593|gb|EFE62022.1| ribosome-binding factor A [Escherichia coli B088]
gi|291426785|gb|EFE99817.1| ribosome-binding factor A [Escherichia coli FVEC1412]
gi|294493732|gb|ADE92488.1| ribosome-binding factor A [Escherichia coli IHE3034]
gi|298277659|gb|EFI19175.1| ribosome-binding factor A [Escherichia coli FVEC1302]
gi|299879883|gb|EFI88094.1| ribosome-binding factor A [Escherichia coli MS 196-1]
gi|300300133|gb|EFJ56518.1| ribosome-binding factor A [Escherichia coli MS 185-1]
gi|300308211|gb|EFJ62731.1| ribosome-binding factor A [Escherichia coli MS 200-1]
gi|300317386|gb|EFJ67170.1| ribosome-binding factor A [Escherichia coli MS 175-1]
gi|300403704|gb|EFJ87242.1| ribosome-binding factor A [Escherichia coli MS 84-1]
gi|300407075|gb|EFJ90613.1| ribosome-binding factor A [Escherichia coli MS 45-1]
gi|300413948|gb|EFJ97258.1| ribosome-binding factor A [Escherichia coli MS 115-1]
gi|300417859|gb|EFK01170.1| ribosome-binding factor A [Escherichia coli MS 182-1]
gi|300451706|gb|EFK15326.1| ribosome-binding factor A [Escherichia coli MS 116-1]
gi|300456937|gb|EFK20430.1| ribosome-binding factor A [Escherichia coli MS 21-1]
gi|300462219|gb|EFK25712.1| ribosome-binding factor A [Escherichia coli MS 187-1]
gi|300523638|gb|EFK44707.1| ribosome-binding factor A [Escherichia coli MS 119-7]
gi|300529879|gb|EFK50941.1| ribosome-binding factor A [Escherichia coli MS 107-1]
gi|300842758|gb|EFK70518.1| ribosome-binding factor A [Escherichia coli MS 124-1]
gi|300846899|gb|EFK74659.1| ribosome-binding factor A [Escherichia coli MS 78-1]
gi|301076823|gb|EFK91629.1| ribosome-binding factor A [Escherichia coli MS 146-1]
gi|305850054|gb|EFM50513.1| ribosome-binding factor A [Escherichia coli NC101]
gi|306907037|gb|EFN37545.1| ribosome-binding factor A [Escherichia coli W]
gi|307555263|gb|ADN48038.1| ribosome-binding factor A [Escherichia coli ABU 83972]
gi|307625232|gb|ADN69536.1| ribosome-binding factor A [Escherichia coli UM146]
gi|308122702|gb|EFO59964.1| ribosome-binding factor A [Escherichia coli MS 145-7]
gi|308926614|gb|EFP72090.1| ribosome-binding factor A [Shigella dysenteriae 1617]
gi|309703595|emb|CBJ02935.1| ribosome-binding factor A [Escherichia coli ETEC H10407]
gi|310332503|gb|EFP99716.1| ribosome-binding factor A [Escherichia coli 1827-70]
gi|312947726|gb|ADR28553.1| ribosome-binding factor A [Escherichia coli O83:H1 str. NRG 857C]
gi|313648591|gb|EFS13033.1| ribosome-binding factor A [Shigella flexneri 2a str. 2457T]
gi|315062475|gb|ADT76802.1| 30S ribosome binding factor [Escherichia coli W]
gi|315137755|dbj|BAJ44914.1| ribosome-binding factor A [Escherichia coli DH1]
gi|315257093|gb|EFU37061.1| ribosome-binding factor A [Escherichia coli MS 85-1]
gi|315288931|gb|EFU48329.1| ribosome-binding factor A [Escherichia coli MS 110-3]
gi|315294912|gb|EFU54251.1| ribosome-binding factor A [Escherichia coli MS 153-1]
gi|315297881|gb|EFU57151.1| ribosome-binding factor A [Escherichia coli MS 16-3]
gi|315617250|gb|EFU97859.1| ribosome-binding factor A [Escherichia coli 3431]
gi|320175531|gb|EFW50627.1| Ribosome-binding factor A [Shigella dysenteriae CDC 74-1112]
gi|320181443|gb|EFW56361.1| Ribosome-binding factor A [Shigella boydii ATCC 9905]
gi|320186656|gb|EFW61380.1| Ribosome-binding factor A [Shigella flexneri CDC 796-83]
gi|320189521|gb|EFW64180.1| Ribosome-binding factor A [Escherichia coli O157:H7 str. EC1212]
gi|320194653|gb|EFW69283.1| Ribosome-binding factor A [Escherichia coli WV_060327]
gi|320202081|gb|EFW76656.1| Ribosome-binding factor A [Escherichia coli EC4100B]
gi|320640239|gb|EFX09811.1| ribosome-binding factor A [Escherichia coli O157:H7 str. G5101]
gi|320645536|gb|EFX14545.1| ribosome-binding factor A [Escherichia coli O157:H- str. 493-89]
gi|320650846|gb|EFX19303.1| ribosome-binding factor A [Escherichia coli O157:H- str. H 2687]
gi|320656227|gb|EFX24139.1| ribosome-binding factor A [Escherichia coli O55:H7 str. 3256-97 TW
07815]
gi|320661917|gb|EFX29325.1| ribosome-binding factor A [Escherichia coli O55:H7 str. USDA 5905]
gi|320666752|gb|EFX33731.1| ribosome-binding factor A [Escherichia coli O157:H7 str. LSU-61]
gi|323154381|gb|EFZ40582.1| ribosome-binding factor A [Escherichia coli EPECa14]
gi|323162861|gb|EFZ48696.1| ribosome-binding factor A [Escherichia coli E128010]
gi|323165125|gb|EFZ50915.1| ribosome-binding factor A [Shigella sonnei 53G]
gi|323173573|gb|EFZ59202.1| ribosome-binding factor A [Escherichia coli LT-68]
gi|323178880|gb|EFZ64456.1| ribosome-binding factor A [Escherichia coli 1180]
gi|323183122|gb|EFZ68520.1| ribosome-binding factor A [Escherichia coli 1357]
gi|323189210|gb|EFZ74494.1| ribosome-binding factor A [Escherichia coli RN587/1]
gi|323376937|gb|ADX49205.1| ribosome-binding factor A [Escherichia coli KO11]
gi|323936137|gb|EGB32431.1| ribosome-binding protein A [Escherichia coli E1520]
gi|323941731|gb|EGB37910.1| ribosome-binding proteinA [Escherichia coli E482]
gi|323946977|gb|EGB42993.1| ribosome-binding protein A [Escherichia coli H120]
gi|323951313|gb|EGB47188.1| ribosome-binding proteinA [Escherichia coli H252]
gi|323957684|gb|EGB53398.1| ribosome-binding proteinA [Escherichia coli H263]
gi|323961061|gb|EGB56676.1| ribosome-binding proteinA [Escherichia coli H489]
gi|323966349|gb|EGB61783.1| ribosome-binding proteinA [Escherichia coli M863]
gi|323970268|gb|EGB65539.1| ribosome-binding proteinA [Escherichia coli TA007]
gi|323979114|gb|EGB74192.1| ribosome-binding proteinA [Escherichia coli TW10509]
gi|324008766|gb|EGB77985.1| ribosome-binding factor A [Escherichia coli MS 57-2]
gi|324012107|gb|EGB81326.1| ribosome-binding factor A [Escherichia coli MS 60-1]
gi|324018309|gb|EGB87528.1| ribosome-binding factor A [Escherichia coli MS 117-3]
gi|324115227|gb|EGC09191.1| ribosome-binding proteinA [Escherichia fergusonii B253]
gi|325498750|gb|EGC96609.1| ribosome-binding factor A [Escherichia fergusonii ECD227]
gi|326337869|gb|EGD61703.1| Ribosome-binding factor A [Escherichia coli O157:H7 str. 1125]
gi|326347438|gb|EGD71163.1| Ribosome-binding factor A [Escherichia coli O157:H7 str. 1044]
gi|327251948|gb|EGE63634.1| ribosome-binding factor A [Escherichia coli STEC_7v]
gi|331037338|gb|EGI09562.1| ribosome-binding factor A [Escherichia coli H736]
gi|331048155|gb|EGI20232.1| ribosome-binding factor A [Escherichia coli M718]
gi|331054038|gb|EGI26067.1| ribosome-binding factor A [Escherichia coli TA206]
gi|331058029|gb|EGI30011.1| ribosome-binding factor A [Escherichia coli TA143]
gi|331062909|gb|EGI34823.1| ribosome-binding factor A [Escherichia coli TA271]
gi|331068144|gb|EGI39540.1| ribosome-binding factor A [Escherichia coli TA280]
gi|331073313|gb|EGI44636.1| ribosome-binding factor A [Escherichia coli H591]
gi|331078431|gb|EGI49637.1| ribosome-binding factor A [Escherichia coli H299]
gi|332086101|gb|EGI91263.1| ribosome-binding factor A [Shigella boydii 5216-82]
gi|332086394|gb|EGI91541.1| ribosome-binding factor A [Shigella dysenteriae 155-74]
gi|332090730|gb|EGI95824.1| ribosome-binding factor A [Shigella boydii 3594-74]
gi|332345124|gb|AEE58458.1| ribosome-binding factor RbfA [Escherichia coli UMNK88]
gi|332752327|gb|EGJ82717.1| ribosome-binding factor A [Shigella flexneri 4343-70]
gi|332752854|gb|EGJ83239.1| ribosome-binding factor A [Shigella flexneri K-671]
gi|332754590|gb|EGJ84956.1| ribosome-binding factor A [Shigella flexneri 2747-71]
gi|332765164|gb|EGJ95391.1| ribosome-binding factor A [Shigella flexneri 2930-71]
gi|332998809|gb|EGK18405.1| ribosome-binding factor A [Shigella flexneri VA-6]
gi|333000039|gb|EGK19622.1| ribosome-binding factor A [Shigella flexneri K-218]
gi|333014561|gb|EGK33908.1| ribosome-binding factor A [Shigella flexneri K-304]
Length = 133
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 61/115 (53%), Gaps = 6/115 (5%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
K R RV +E++ + +IL E +D + + ++S V MS DL A VY++ D
Sbjct: 3 KEFGRPQRVAQEMQKEI-ALILQREIKDPRLGM-MTTVSGVEMSRDLAYAKVYVTFLNDK 60
Query: 67 SPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
D V I AL FIR +G+++R LR VPEL F YD SL +++ L+
Sbjct: 61 DEDAVKAGIKALQEASGFIRSLLGKAMR-LRIVPELTFFYDNSLVEGMRMSNLVT 114
>gi|170754753|ref|YP_001781960.1| ribosome-binding factor A [Clostridium botulinum B1 str. Okra]
gi|229564414|sp|B1II48|RBFA_CLOBK RecName: Full=Ribosome-binding factor A
gi|169119965|gb|ACA43801.1| ribosome-binding factor A [Clostridium botulinum B1 str. Okra]
Length = 120
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 63/108 (58%), Gaps = 4/108 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDVSPD 69
RA R+ EEV+ + +I N+ RL + ++S+++V ++ DL+ A VY+S+ + + +
Sbjct: 5 RAGRINEEVKKEVSNIIHNDIKDPRLSA--MVSVTDVDVTKDLKYAKVYVSIFGNEKAKE 62
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ AL ++ FIR IGR ++ LR PE+ D S++ ++ L+
Sbjct: 63 ESLQALKSSVGFIRKEIGRRVK-LRNTPEVIIEVDNSIERGMHIDELL 109
>gi|169824463|ref|YP_001692074.1| ribosome-binding factor A [Finegoldia magna ATCC 29328]
gi|302380621|ref|ZP_07269086.1| ribosome-binding factor A [Finegoldia magna ACS-171-V-Col3]
gi|303233702|ref|ZP_07320356.1| ribosome-binding factor A [Finegoldia magna BVS033A4]
gi|259551994|sp|B0S1E4|RBFA_FINM2 RecName: Full=Ribosome-binding factor A
gi|167831268|dbj|BAG08184.1| ribosome-binding factor A [Finegoldia magna ATCC 29328]
gi|302311564|gb|EFK93580.1| ribosome-binding factor A [Finegoldia magna ACS-171-V-Col3]
gi|302495136|gb|EFL54888.1| ribosome-binding factor A [Finegoldia magna BVS033A4]
Length = 121
Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 62/106 (58%), Gaps = 4/106 (3%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDV 66
N +R R+ E++ + I+N+ +D I + +S++EV ++ DL ATVYI+ + D
Sbjct: 2 NIKRVRRISSEIKKVISSSIINS-LKDPRIDKLNVSVTEVKVTNDLSFATVYIAVIGDDE 60
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYD-TSLQSYW 111
+ + LN F++ +IG ++ +LR+VP+L F+ D TS QS
Sbjct: 61 KKKQTLEGLNKAKGFLKKQIGENV-DLRHVPQLIFKIDETSEQSMH 105
>gi|150390434|ref|YP_001320483.1| ribosome-binding factor A [Alkaliphilus metalliredigens QYMF]
gi|172052480|sp|A6TRK6|RBFA_ALKMQ RecName: Full=Ribosome-binding factor A
gi|149950296|gb|ABR48824.1| ribosome-binding factor A [Alkaliphilus metalliredigens QYMF]
Length = 138
Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 57/99 (57%), Gaps = 4/99 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP-D 69
R R+ EE++ + +I N+ +D I++ + SI EV ++ DLR AT+YIS+ D +
Sbjct: 8 RVNRLAEEIKKIISHMI-RNDLRDPRIAK-MTSIIEVNVTRDLRFATIYISVLGDQQEKE 65
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
I L + FIR +GR + R+ PEL F+ D S++
Sbjct: 66 ETIEGLKKSSGFIRKEVGRQI-TARFTPELIFKLDESIE 103
>gi|52425497|ref|YP_088634.1| ribosome-binding factor A [Mannheimia succiniciproducens MBEL55E]
gi|61214861|sp|Q65SL1|RBFA_MANSM RecName: Full=Ribosome-binding factor A
gi|52307549|gb|AAU38049.1| RbfA protein [Mannheimia succiniciproducens MBEL55E]
Length = 131
Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 65/112 (58%), Gaps = 7/112 (6%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL---DV 66
+R+ RV +E++ + VIL E +D I ++++S+V +S DL A ++++ D
Sbjct: 6 KRSDRVAQELQKEI-AVILQREVKDPRIG--MVTVSDVEVSRDLAYAKIFVTFLFNNDDE 62
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ + + AL +IR +G+++R LR VPELRF YD SL +++ L+
Sbjct: 63 AIKQGMKALEKAAPYIRSLVGKAMR-LRIVPELRFEYDRSLVEGMRMSNLVT 113
>gi|260914252|ref|ZP_05920725.1| ribosome-binding factor A [Pasteurella dagmatis ATCC 43325]
gi|260631885|gb|EEX50063.1| ribosome-binding factor A [Pasteurella dagmatis ATCC 43325]
Length = 140
Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 69/126 (54%), Gaps = 16/126 (12%)
Query: 1 MKNKN-PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVY 59
MK K + +R+ RV +E++ + VIL E +D I ++++S+V +S DL A V+
Sbjct: 1 MKEKQMAREFKRSDRVAQEIQKEI-AVILQREVKDPRIG--MVTVSDVEVSSDLAYAKVF 57
Query: 60 ISLPLDVSPDRVISALNCNIK-------FIRGRIGRSLRNLRYVPELRFRYDTSLQSYWK 112
++ D SA+ +K +IR +G+++R LR VPE+RF YD SL +
Sbjct: 58 VTFLFDNDE----SAIEAGMKGLEKASPYIRSLLGKAMR-LRIVPEIRFIYDRSLIEGMR 112
Query: 113 LNALMC 118
++ L+
Sbjct: 113 MSNLVT 118
>gi|168187907|ref|ZP_02622542.1| ribosome-binding factor A [Clostridium botulinum C str. Eklund]
gi|169294249|gb|EDS76382.1| ribosome-binding factor A [Clostridium botulinum C str. Eklund]
Length = 121
Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 58/109 (53%), Gaps = 4/109 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDVSPD 69
R R+ EEV+ + +I ++ RL ++S++ V ++ DLR A V+IS+ D S
Sbjct: 5 RLGRINEEVKKEISNIIRDDIHDPRLTG--MVSVTRVEVTNDLRYAKVFISIFGSDESKA 62
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ AL + FIR +G ++ LRY PE+ D S++ +N L+
Sbjct: 63 ETLEALKSSAGFIRREVGHRVK-LRYTPEIILELDESIEHGMHINDLLS 110
>gi|254447065|ref|ZP_05060532.1| ribosome-binding factor A [gamma proteobacterium HTCC5015]
gi|198263204|gb|EDY87482.1| ribosome-binding factor A [gamma proteobacterium HTCC5015]
Length = 142
Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 64/111 (57%), Gaps = 4/111 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
K+ R+ RV ++++ L +I E +D +S D +++ EV ++ DL A +YI+ LD
Sbjct: 16 KDYPRSYRVADQIQKDLANLI-RTEVKDPRLS-DFVTLEEVRVTRDLSQAKIYIT-TLDD 72
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ + LN F+RG +G+ LR LR +P+L F YD + + +++ L+
Sbjct: 73 KAEDSAAVLNRASGFLRGVLGKRLR-LRVIPQLHFIYDATQEEAQRIDGLI 122
>gi|83589899|ref|YP_429908.1| ribosome-binding factor A [Moorella thermoacetica ATCC 39073]
gi|123524645|sp|Q2RJM4|RBFA_MOOTA RecName: Full=Ribosome-binding factor A
gi|83572813|gb|ABC19365.1| ribosome-binding factor A [Moorella thermoacetica ATCC 39073]
Length = 122
Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 59/109 (54%), Gaps = 3/109 (2%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP-D 69
R RV EE++ + +I +E +D + ++S++ V +S D A VY+S+ D +
Sbjct: 6 RNQRVAEEMKKEIARII-RDEVKDPRLEAGLVSVTGVELSNDRHYAKVYVSIYGDEEARN 64
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ + L FIR IG+ L +LRY PE+ F+ D S++ +N L+
Sbjct: 65 QAMEGLARATSFIRREIGQRL-SLRYTPEITFKLDVSIEHGDHINRLLA 112
>gi|257066117|ref|YP_003152373.1| ribosome-binding factor A [Anaerococcus prevotii DSM 20548]
gi|256797997|gb|ACV28652.1| ribosome-binding factor A [Anaerococcus prevotii DSM 20548]
Length = 128
Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 62/112 (55%), Gaps = 2/112 (1%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS 67
N RR R+ EV+ L ++ ++ RL + +++I++V ++ DL A Y+S+ D +
Sbjct: 2 NKRRTERISSEVKKELSKILRDDLNDPRLSTEAMVTITDVEVTNDLSYADCYVSVLGDAT 61
Query: 68 -PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ V+ AL +I+ IG +R LR +PE RF+ D S++ ++ L+
Sbjct: 62 NKEDVLEALEQAKGYIKILIGERMR-LRSMPEFRFKIDNSIEHGAYMDKLIA 112
>gi|325578300|ref|ZP_08148435.1| ribosome-binding factor A [Haemophilus parainfluenzae ATCC 33392]
gi|325160036|gb|EGC72165.1| ribosome-binding factor A [Haemophilus parainfluenzae ATCC 33392]
Length = 128
Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 65/112 (58%), Gaps = 7/112 (6%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD---V 66
+R+ RV +E++ + +IL E +D I ++++S+V +S DL A V+++ D V
Sbjct: 6 KRSDRVAQELQKEI-AIILQREVKDPRIG--MVTVSDVEVSSDLAYAKVFVTFLFDHDEV 62
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ + + L +IR +G+++R LR VPE+RF YD SL +++ L+
Sbjct: 63 AIAQGMKGLEKAAPYIRSLVGKAMR-LRIVPEIRFFYDQSLVEGMRMSNLVT 113
>gi|229525297|ref|ZP_04414702.1| ribosome-binding factor A [Vibrio cholerae bv. albensis VL426]
gi|229338878|gb|EEO03895.1| ribosome-binding factor A [Vibrio cholerae bv. albensis VL426]
Length = 136
Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 68/120 (56%), Gaps = 6/120 (5%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
M+N PK R+ RV ++++ L +IL E +D + +++IS+V +S DL A V++
Sbjct: 1 MRNDMPKEFSRSQRVAQQLQKEL-AMILQREVRDSRLG--MVTISDVEVSRDLAYAKVFV 57
Query: 61 SLPL--DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ + +P+ + AL + IR +G+ +R LR PE+RF YD +L +++ L+
Sbjct: 58 TFLCIGEQTPESCLEALREHEVQIRMMLGKQIR-LRLTPEVRFYYDNTLVEGMRMSNLVT 116
>gi|78222797|ref|YP_384544.1| ribosome-binding factor A [Geobacter metallireducens GS-15]
gi|123571972|sp|Q39VA5|RBFA_GEOMG RecName: Full=Ribosome-binding factor A
gi|78194052|gb|ABB31819.1| ribosome-binding factor A [Geobacter metallireducens GS-15]
Length = 118
Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
Query: 42 ISISEVCMSVDLRVATVYIS-LPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELR 100
++I+ V +S D+R AT+Y + + D + + LN ++ FIR + + LR LR+ PEL
Sbjct: 32 VTITGVKVSDDIRHATIYYTVMGSDEAKKSTLHGLNSSVGFIRKEVSKELR-LRFAPELI 90
Query: 101 FRYDTSLQSYWKLNALM 117
F+YD S++ +++ L+
Sbjct: 91 FKYDESIEYGNRIDQLL 107
>gi|257468344|ref|ZP_05632438.1| ribosome-binding factor A [Fusobacterium ulcerans ATCC 49185]
gi|317062617|ref|ZP_07927102.1| ribosome-binding factor A [Fusobacterium ulcerans ATCC 49185]
gi|313688293|gb|EFS25128.1| ribosome-binding factor A [Fusobacterium ulcerans ATCC 49185]
Length = 115
Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 49/81 (60%), Gaps = 3/81 (3%)
Query: 39 RDVISISEVCMSVDLRVATVYISL--PLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYV 96
+ ++S++ V ++ DL+ A V+ S+ DV+ D V+ LN F+R R+ + +RY+
Sbjct: 31 KGIVSVTSVHVTEDLKFADVFFSVMGQEDVNTDEVLEGLNQIKGFLRKRVAEEI-EIRYI 89
Query: 97 PELRFRYDTSLQSYWKLNALM 117
PE+R + D S++ K++ L+
Sbjct: 90 PEIRVKIDDSIEHAVKISKLL 110
>gi|251792717|ref|YP_003007443.1| ribosome-binding factor A [Aggregatibacter aphrophilus NJ8700]
gi|247534110|gb|ACS97356.1| ribosome-binding factor A [Aggregatibacter aphrophilus NJ8700]
Length = 128
Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 63/112 (56%), Gaps = 7/112 (6%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPD 69
+R+ RV +E++ + VIL E +D I ++++S+V +S DL A V+++ D
Sbjct: 6 KRSDRVAQEIQKEI-AVILQREVKDPRIG--MVTVSDVEVSSDLAYAKVFVTFLFDHDEQ 62
Query: 70 RV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ + L +IR +G+++R LR VPE+RF YD SL +++ L+
Sbjct: 63 AIAQGMKGLEKAAPYIRTLLGKAMR-LRIVPEIRFIYDQSLVEGMRMSNLVT 113
>gi|168237986|ref|ZP_02663044.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. SL480]
gi|194737644|ref|YP_002116234.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. CVM19633]
gi|238693707|sp|B4TWD6|RBFA_SALSV RecName: Full=Ribosome-binding factor A
gi|194713146|gb|ACF92367.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. CVM19633]
gi|197289067|gb|EDY28436.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. SL480]
Length = 133
Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 61/115 (53%), Gaps = 6/115 (5%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
K R RV +E++ + +IL E +D + + ++S V MS DL A V+++ D
Sbjct: 3 KEFGRPQRVAQEMQKEI-AIILQREIKDPRLGM-MTTVSGVEMSRDLAYAKVFVTFLNDK 60
Query: 67 SPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
D V I AL FIR +G+++R LR VPEL F YD SL +++ L+
Sbjct: 61 DEDAVKAGIKALQEASGFIRSLLGKAMR-LRIVPELTFFYDNSLVEGMRMSNLVT 114
>gi|148380372|ref|YP_001254913.1| ribosome-binding factor A [Clostridium botulinum A str. ATCC 3502]
gi|153933206|ref|YP_001384592.1| ribosome-binding factor A [Clostridium botulinum A str. ATCC 19397]
gi|153935306|ref|YP_001388108.1| ribosome-binding factor A [Clostridium botulinum A str. Hall]
gi|226949770|ref|YP_002804861.1| ribosome-binding factor A [Clostridium botulinum A2 str. Kyoto]
gi|166218431|sp|A7FVZ2|RBFA_CLOB1 RecName: Full=Ribosome-binding factor A
gi|166218432|sp|A5I4J2|RBFA_CLOBH RecName: Full=Ribosome-binding factor A
gi|254789742|sp|C1FS58|RBFA_CLOBJ RecName: Full=Ribosome-binding factor A
gi|148289856|emb|CAL83964.1| ribosome-binding factor A [Clostridium botulinum A str. ATCC 3502]
gi|152929250|gb|ABS34750.1| ribosome-binding factor A [Clostridium botulinum A str. ATCC 19397]
gi|152931220|gb|ABS36719.1| ribosome-binding factor A [Clostridium botulinum A str. Hall]
gi|226844456|gb|ACO87122.1| ribosome-binding factor A [Clostridium botulinum A2 str. Kyoto]
gi|322806683|emb|CBZ04252.1| ribosome-binding factor A [Clostridium botulinum H04402 065]
Length = 120
Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 63/108 (58%), Gaps = 4/108 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDVSPD 69
RA R+ EEV+ + +I N+ RL + ++S+++V ++ DL+ A VY+S+ + + +
Sbjct: 5 RAGRINEEVKKEVSNIIHNDIKDPRLSA--MVSVTDVNVTKDLKYAKVYVSIFGNEKAKE 62
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ AL ++ FIR +GR ++ LR PE+ D S++ ++ L+
Sbjct: 63 ESLEALKSSVGFIRKEVGRRVK-LRNTPEVIIEVDNSIERGMHIDELL 109
>gi|16766583|ref|NP_462198.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|167990150|ref|ZP_02571250.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar 4,[5],12:i:- str. CVM23701]
gi|168231894|ref|ZP_02656952.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Kentucky str. CDC 191]
gi|194470716|ref|ZP_03076700.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Kentucky str. CVM29188]
gi|198243121|ref|YP_002217258.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Dublin str. CT_02021853]
gi|200387117|ref|ZP_03213729.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Virchow str. SL491]
gi|205354189|ref|YP_002227990.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|207858535|ref|YP_002245186.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|20978604|sp|Q8ZLT1|RBFA_SALTY RecName: Full=Ribosome-binding factor A
gi|226723608|sp|B5FI12|RBFA_SALDC RecName: Full=Ribosome-binding factor A
gi|226723609|sp|B5QZV7|RBFA_SALEP RecName: Full=Ribosome-binding factor A
gi|226723610|sp|B5REN5|RBFA_SALG2 RecName: Full=Ribosome-binding factor A
gi|16421844|gb|AAL22157.1| ribosome-binding factor [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|194457080|gb|EDX45919.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Kentucky str. CVM29188]
gi|197937637|gb|ACH74970.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Dublin str. CT_02021853]
gi|199604215|gb|EDZ02760.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Virchow str. SL491]
gi|205273970|emb|CAR38975.1| ribosome-binding factor A (P15B protein) [Salmonella enterica
subsp. enterica serovar Gallinarum str. 287/91]
gi|205331145|gb|EDZ17909.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar 4,[5],12:i:- str. CVM23701]
gi|205333937|gb|EDZ20701.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Kentucky str. CDC 191]
gi|206710338|emb|CAR34696.1| ribosome-binding factor A (P15B protein) [Salmonella enterica
subsp. enterica serovar Enteritidis str. P125109]
gi|261248451|emb|CBG26288.1| ribosome-binding factor A (P15B protein) [Salmonella enterica
subsp. enterica serovar Typhimurium str. D23580]
gi|267995482|gb|ACY90367.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Typhimurium str. 14028S]
gi|301159835|emb|CBW19354.1| ribosome-binding factor A (P15B protein) [Salmonella enterica
subsp. enterica serovar Typhimurium str. SL1344]
gi|312914311|dbj|BAJ38285.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Typhimurium str. T000240]
gi|321225969|gb|EFX51023.1| Ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Typhimurium str. TN061786]
gi|322615290|gb|EFY12211.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Montevideo str. 315996572]
gi|322618351|gb|EFY15242.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-1]
gi|322622844|gb|EFY19688.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-3]
gi|322626834|gb|EFY23631.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-4]
gi|322631403|gb|EFY28163.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-1]
gi|322635330|gb|EFY32044.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-2]
gi|322643465|gb|EFY40028.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Montevideo str. 531954]
gi|322647099|gb|EFY43600.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Montevideo str. NC_MB110209-0054]
gi|322648902|gb|EFY45347.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Montevideo str. OH_2009072675]
gi|322655094|gb|EFY51405.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Montevideo str. CASC_09SCPH15965]
gi|322657697|gb|EFY53965.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Montevideo str. 19N]
gi|322664193|gb|EFY60391.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Montevideo str. 81038-01]
gi|322667476|gb|EFY63638.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Montevideo str. MD_MDA09249507]
gi|322674724|gb|EFY70816.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Montevideo str. 414877]
gi|322675643|gb|EFY71716.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Montevideo str. 366867]
gi|322682279|gb|EFY78302.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Montevideo str. 413180]
gi|322684882|gb|EFY80880.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Montevideo str. 446600]
gi|323131645|gb|ADX19075.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Typhimurium str. 4/74]
gi|323191871|gb|EFZ77119.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Montevideo str. 609458-1]
gi|323199030|gb|EFZ84127.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Montevideo str. 556150-1]
gi|323204270|gb|EFZ89279.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Montevideo str. 609460]
gi|323207617|gb|EFZ92564.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Montevideo str. 507440-20]
gi|323211330|gb|EFZ96174.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Montevideo str. 556152]
gi|323214728|gb|EFZ99477.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Montevideo str. MB101509-0077]
gi|323221208|gb|EGA05634.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Montevideo str. MB102109-0047]
gi|323224051|gb|EGA08344.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Montevideo str. MB110209-0055]
gi|323230300|gb|EGA14419.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Montevideo str. MB111609-0052]
gi|323233276|gb|EGA17370.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009083312]
gi|323239313|gb|EGA23363.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009085258]
gi|323242436|gb|EGA26462.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Montevideo str. 315731156]
gi|323246946|gb|EGA30912.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2009159199]
gi|323254121|gb|EGA37941.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008282]
gi|323255238|gb|EGA39015.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008283]
gi|323262701|gb|EGA46257.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008284]
gi|323264011|gb|EGA47519.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008285]
gi|323269397|gb|EGA52852.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008287]
gi|326625036|gb|EGE31381.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Dublin str. 3246]
gi|326629310|gb|EGE35653.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Gallinarum str. 9]
gi|332990143|gb|AEF09126.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Typhimurium str. UK-1]
Length = 133
Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 61/115 (53%), Gaps = 6/115 (5%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
K R RV +E++ + +IL E +D + + ++S V MS DL A V+++ D
Sbjct: 3 KEFGRPQRVAQEMQKEI-AIILQREIKDPRLGM-MTTVSGVEMSRDLAYAKVFVTFLNDK 60
Query: 67 SPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
D V I AL FIR +G+++R LR VPEL F YD SL +++ L+
Sbjct: 61 DEDAVKAGIKALQEASGFIRSLLGKAMR-LRIVPELTFFYDNSLVEGMRMSNLVT 114
>gi|330830887|ref|YP_004393839.1| ribosome-binding factor A [Aeromonas veronii B565]
gi|328806023|gb|AEB51222.1| Ribosome-binding factor A [Aeromonas veronii B565]
Length = 145
Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 65/112 (58%), Gaps = 8/112 (7%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
R RVG++++ + +IL E +D I ++++S+V +S DL A +Y++ L L+ +
Sbjct: 7 RTRRVGQQIQREI-ALILQREVKDPRIG--MVTVSDVEVSRDLNYAKIYVTFLQLENDAE 63
Query: 70 RV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
R+ + L +IR +G ++R LR VPELRF YD +L +L+ L+
Sbjct: 64 RIKEGLQGLTEAAGYIRSLLGSAMR-LRVVPELRFYYDQTLVEGMRLSNLVT 114
>gi|293390257|ref|ZP_06634591.1| ribosome-binding factor A [Aggregatibacter actinomycetemcomitans
D7S-1]
gi|290950791|gb|EFE00910.1| ribosome-binding factor A [Aggregatibacter actinomycetemcomitans
D7S-1]
Length = 128
Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 63/112 (56%), Gaps = 7/112 (6%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPD 69
+R+ RV +E++ + VIL E +D I ++++S+V +S DL A V+++ D
Sbjct: 6 KRSDRVAQEIQKEI-AVILQREVKDPRIG--MVTVSDVDVSSDLAYAKVFVTFLFDHDEQ 62
Query: 70 RV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ + L +IR +G+++R LR VPE+RF YD SL +++ L+
Sbjct: 63 AIAQGMKGLEKAAPYIRTLLGKAMR-LRIVPEIRFIYDQSLVEGMRMSNLVT 113
>gi|153938139|ref|YP_001391715.1| ribosome-binding factor A [Clostridium botulinum F str. Langeland]
gi|168180704|ref|ZP_02615368.1| ribosome-binding factor A [Clostridium botulinum NCTC 2916]
gi|168184623|ref|ZP_02619287.1| ribosome-binding factor A [Clostridium botulinum Bf]
gi|237795853|ref|YP_002863405.1| ribosome-binding factor A [Clostridium botulinum Ba4 str. 657]
gi|166218433|sp|A7GG05|RBFA_CLOBL RecName: Full=Ribosome-binding factor A
gi|259551954|sp|C3L0B5|RBFA_CLOB6 RecName: Full=Ribosome-binding factor A
gi|152934035|gb|ABS39533.1| ribosome-binding factor A [Clostridium botulinum F str. Langeland]
gi|182668591|gb|EDT80570.1| ribosome-binding factor A [Clostridium botulinum NCTC 2916]
gi|182672289|gb|EDT84250.1| ribosome-binding factor A [Clostridium botulinum Bf]
gi|229261048|gb|ACQ52081.1| ribosome-binding factor A [Clostridium botulinum Ba4 str. 657]
gi|295319742|gb|ADG00120.1| ribosome-binding factor A [Clostridium botulinum F str. 230613]
Length = 120
Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 63/108 (58%), Gaps = 4/108 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDVSPD 69
RA R+ EEV+ + +I N+ RL + ++S+++V ++ DL+ A VY+S+ + + +
Sbjct: 5 RAGRINEEVKKEVSNIIHNDIKDPRLSA--MVSVTDVNVTKDLKYAKVYVSIFGNEKAKE 62
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ AL ++ FIR +GR ++ LR PE+ D S++ ++ L+
Sbjct: 63 ESLQALKSSVGFIRKEVGRRVK-LRNTPEVIIEVDNSIERGMHIDELL 109
>gi|323705399|ref|ZP_08116974.1| ribosome-binding factor A [Thermoanaerobacterium xylanolyticum
LX-11]
gi|323535301|gb|EGB25077.1| ribosome-binding factor A [Thermoanaerobacterium xylanolyticum
LX-11]
Length = 119
Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 56/99 (56%), Gaps = 4/99 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDVSPD 69
R R+ EE++ + +I E +D IS ++ SI+++ +S DLR A +YIS+ D
Sbjct: 4 RIGRLSEEIKKEVSQMIFE-EIKDPRIS-NMTSITDIEVSKDLRYAKIYISVYGNDDEKK 61
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
I L FIR +G+ ++ LRY+PEL F D S++
Sbjct: 62 NTIEGLKSATGFIRRELGKRIK-LRYIPELIFELDNSIE 99
>gi|297588442|ref|ZP_06947085.1| ribosome-binding factor A [Finegoldia magna ATCC 53516]
gi|297573815|gb|EFH92536.1| ribosome-binding factor A [Finegoldia magna ATCC 53516]
Length = 121
Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 62/104 (59%), Gaps = 4/104 (3%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDV 66
N +R R+ E++ + I+N+ +D I + +S+++V ++ DL ATVYI+ + D
Sbjct: 2 NIKRVRRISSEIKKVISSSIINS-LKDPRIDKLNVSVTDVKVTNDLSFATVYIAVIGDDE 60
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYD-TSLQS 109
+ + LN F++ +IG S+ +LR+VP+L F+ D TS QS
Sbjct: 61 KKKQTLEGLNKAKGFLKKQIGESV-DLRHVPQLIFKIDETSEQS 103
>gi|220931629|ref|YP_002508537.1| ribosome-binding factor A [Halothermothrix orenii H 168]
gi|254789753|sp|B8CW73|RBFA_HALOH RecName: Full=Ribosome-binding factor A
gi|219992939|gb|ACL69542.1| ribosome-binding factor A [Halothermothrix orenii H 168]
Length = 122
Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 62/109 (56%), Gaps = 5/109 (4%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPD 69
+RA R+GE ++ + +IL E +D I IS+++V +S DLR A V++S+ D
Sbjct: 4 QRARRLGELLKKEISDIILR-EVKDPRIG--FISVTDVEVSNDLRHAKVFVSVYGDEKER 60
Query: 70 R-VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ + L +IR IG ++ + Y PE+ FRYD SL+ ++N L+
Sbjct: 61 KETMEGLEKATGYIRKLIGERVK-VYYTPEILFRYDDSLEHGARINELL 108
>gi|312127894|ref|YP_003992768.1| ribosome-binding factor a [Caldicellulosiruptor hydrothermalis 108]
gi|311777913|gb|ADQ07399.1| ribosome-binding factor A [Caldicellulosiruptor hydrothermalis 108]
Length = 132
Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 64/110 (58%), Gaps = 6/110 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
R+ RV EE++ L +I ++ +D + ++ISI +V MS DLR A VY+S+ D ++
Sbjct: 5 RSDRVSEEIKKELSDII-QHDLKDPRLCAELISIVKVNMSKDLRHAKVYVSI-FDKDKEK 62
Query: 71 V---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
V + AL +IR I R + +LR+ PE+ F D S++ +++ ++
Sbjct: 63 VETTMKALENAKPYIRREISRRI-SLRFTPEITFELDDSIEYGARISQIL 111
>gi|148263959|ref|YP_001230665.1| ribosome-binding factor A [Geobacter uraniireducens Rf4]
gi|189039543|sp|A5GF87|RBFA_GEOUR RecName: Full=Ribosome-binding factor A
gi|146397459|gb|ABQ26092.1| ribosome-binding factor A [Geobacter uraniireducens Rf4]
Length = 122
Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 61/109 (55%), Gaps = 5/109 (4%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSP 68
+R+ +V E V L+ +L +D I ++I+ V ++ D+ +ATVY + + D
Sbjct: 3 KRSEKVAEAVHE-LISELLVKGLKDPRIG--FVTITGVKVTDDMHLATVYFTVIGSDAEK 59
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
LN FIR +G+SLR +RYVP++ F+YD S+ +++ +++
Sbjct: 60 KATEQGLNSARGFIRKEMGKSLR-MRYVPDIVFKYDVSVDYGYRIESIL 107
>gi|317153851|ref|YP_004121899.1| ribosome-binding factor A [Desulfovibrio aespoeensis Aspo-2]
gi|316944102|gb|ADU63153.1| ribosome-binding factor A [Desulfovibrio aespoeensis Aspo-2]
Length = 113
Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 66/112 (58%), Gaps = 9/112 (8%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQD-RLISRDVISISEVCMSVDLRVATVYISLPLDV 66
+SRRA+R+G+++ + +L E QD RL ++++S V M+ +LR+A ++ ++ D+
Sbjct: 5 SSRRAVRMGDQIMREV-ATLLVEEVQDPRL---QLVTLSGVRMNANLRIAEMFYTVSGDI 60
Query: 67 SPDR-VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQS--YWKLNA 115
R V L F+R +G+ L+ L++ PELRF +D L+ Y K +A
Sbjct: 61 EHRREVQQGLEKATGFLRSNLGKRLK-LQFTPELRFTFDDFLEDVVYAKPDA 111
>gi|227968183|pdb|1KKG|A Chain A, Nmr Structure Of Ribosome-Binding Factor A (Rbfa)
Length = 108
Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 56/104 (53%), Gaps = 6/104 (5%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
K R RV +E++ + +IL E +D + + ++S V MS DL A VY++ D
Sbjct: 3 KEFGRPQRVAQEMQKEI-ALILQREIKDPRLGM-MTTVSGVEMSRDLAYAKVYVTFLNDK 60
Query: 67 SPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSL 107
D V I AL FIR +G+++R LR VPEL F YD SL
Sbjct: 61 DEDAVKAGIKALQEASGFIRSLLGKAMR-LRIVPELTFFYDNSL 103
>gi|312622700|ref|YP_004024313.1| ribosome-binding factor a [Caldicellulosiruptor kronotskyensis
2002]
gi|312793239|ref|YP_004026162.1| ribosome-binding factor a [Caldicellulosiruptor kristjanssonii
177R1B]
gi|312876949|ref|ZP_07736924.1| ribosome-binding factor A [Caldicellulosiruptor lactoaceticus 6A]
gi|311796264|gb|EFR12618.1| ribosome-binding factor A [Caldicellulosiruptor lactoaceticus 6A]
gi|312180379|gb|ADQ40549.1| ribosome-binding factor A [Caldicellulosiruptor kristjanssonii
177R1B]
gi|312203167|gb|ADQ46494.1| ribosome-binding factor A [Caldicellulosiruptor kronotskyensis
2002]
Length = 132
Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 65/110 (59%), Gaps = 6/110 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
R+ RV EE++ L +I ++ +D + ++ISI +V MS DLR A VY+S+ D ++
Sbjct: 5 RSDRVSEEIKKELSDII-QHDLKDPRLCAELISIVKVNMSKDLRHAKVYVSI-FDKDKEK 62
Query: 71 VISALNC--NIK-FIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
V S + N K +IR I + + +LR+ PE+ F D S++ +++ ++
Sbjct: 63 VESTMKALENAKPYIRREISKRI-SLRFTPEITFELDNSIEYGARISQIL 111
>gi|114769583|ref|ZP_01447193.1| ribosome-binding factor A [alpha proteobacterium HTCC2255]
gi|114549288|gb|EAU52170.1| ribosome-binding factor A [alpha proteobacterium HTCC2255]
gi|297184255|gb|ADI20373.1| ribosome-binding factor a [uncultured alpha proteobacterium
EB080_L27A02]
Length = 135
Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 62/105 (59%), Gaps = 5/105 (4%)
Query: 4 KNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP 63
K P S+R LRVGE +R A+ V+L + D ++ +++ EV + DL++A VY+ LP
Sbjct: 10 KGP--SQRQLRVGEMLRRAVSDVLLRGDIHDADLAHVSVTVGEVRSTPDLKLAIVYV-LP 66
Query: 64 L-DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSL 107
L + + VI ALN N IR + + L +L+Y P+L+F D +
Sbjct: 67 LGGENANIVIDALNRNKYEIRRSVNK-LVSLKYSPDLKFVLDRTF 110
>gi|323489592|ref|ZP_08094819.1| ribosome-binding factor A [Planococcus donghaensis MPA1U2]
gi|323396723|gb|EGA89542.1| ribosome-binding factor A [Planococcus donghaensis MPA1U2]
Length = 116
Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 64/108 (59%), Gaps = 5/108 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
RA RV E+++ L +I + + +D I +++++V ++ DL+ ATVYIS L D + +
Sbjct: 4 RANRVAEQMKKELSDII-SRKLKDPRIG--FVTVTDVEVTGDLQQATVYISVLGEDHAKE 60
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ + L + FIR IG+ +R LR PEL F D+S+ +++ L+
Sbjct: 61 QTLLGLTKSKGFIRSEIGQRIR-LRKTPELSFEIDSSVAYGNRIDTLL 107
>gi|16273202|ref|NP_439440.1| ribosome-binding factor A [Haemophilus influenzae Rd KW20]
gi|260581410|ref|ZP_05849224.1| ribosome-binding factor A [Haemophilus influenzae RdAW]
gi|1172847|sp|P45141|RBFA_HAEIN RecName: Full=Ribosome-binding factor A
gi|33357151|pdb|1JOS|A Chain A, Ribosome Binding Factor A(Rbfa)
gi|1574747|gb|AAC22937.1| ribosome binding factor A (rbfA) [Haemophilus influenzae Rd KW20]
gi|260091952|gb|EEW75901.1| ribosome-binding factor A [Haemophilus influenzae RdAW]
Length = 128
Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 66/112 (58%), Gaps = 7/112 (6%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD---V 66
+R+ RV +E++ + VIL E +D I ++++S+V +S DL A ++++ D +
Sbjct: 6 KRSDRVAQEIQKEI-AVILQREVKDPRIG--MVTVSDVEVSSDLSYAKIFVTFLFDHDEM 62
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ ++ + L +IR +G+++R LR VPE+RF YD SL +++ L+
Sbjct: 63 AIEQGMKGLEKASPYIRSLLGKAMR-LRIVPEIRFIYDQSLVEGMRMSNLVT 113
>gi|68250153|ref|YP_249265.1| ribosome-binding factor A [Haemophilus influenzae 86-028NP]
gi|145629355|ref|ZP_01785154.1| ribosome-binding factor A [Haemophilus influenzae 22.1-21]
gi|145630826|ref|ZP_01786604.1| ribosome-binding factor A [Haemophilus influenzae R3021]
gi|145633238|ref|ZP_01788969.1| ribosome-binding factor A [Haemophilus influenzae 3655]
gi|145634362|ref|ZP_01790072.1| ribosome-binding factor A [Haemophilus influenzae PittAA]
gi|145637806|ref|ZP_01793455.1| ribosome-binding factor A [Haemophilus influenzae PittHH]
gi|145641331|ref|ZP_01796910.1| ribosome-binding factor A [Haemophilus influenzae R3021]
gi|148825872|ref|YP_001290625.1| ribosome-binding factor A [Haemophilus influenzae PittEE]
gi|229845103|ref|ZP_04465238.1| ribosome-binding factor A [Haemophilus influenzae 6P18H1]
gi|229846816|ref|ZP_04466923.1| ribosome-binding factor A [Haemophilus influenzae 7P49H1]
gi|260582496|ref|ZP_05850287.1| ribosome-binding factor A [Haemophilus influenzae NT127]
gi|319896989|ref|YP_004135184.1| 30S ribosome binding factor [Haemophilus influenzae F3031]
gi|81335423|sp|Q4QK42|RBFA_HAEI8 RecName: Full=Ribosome-binding factor A
gi|166218442|sp|A5UBU1|RBFA_HAEIE RecName: Full=Ribosome-binding factor A
gi|68058352|gb|AAX88605.1| ribosome-binding factor A [Haemophilus influenzae 86-028NP]
gi|144978858|gb|EDJ88581.1| ribosome-binding factor A [Haemophilus influenzae 22.1-21]
gi|144983708|gb|EDJ91168.1| ribosome-binding factor A [Haemophilus influenzae R3021]
gi|144986084|gb|EDJ92674.1| ribosome-binding factor A [Haemophilus influenzae 3655]
gi|145268342|gb|EDK08336.1| ribosome-binding factor A [Haemophilus influenzae PittAA]
gi|145268999|gb|EDK08953.1| ribosome-binding factor A [Haemophilus influenzae PittHH]
gi|145273874|gb|EDK13741.1| ribosome-binding factor A [Haemophilus influenzae 22.4-21]
gi|148716032|gb|ABQ98242.1| ribosome-binding factor A [Haemophilus influenzae PittEE]
gi|229810305|gb|EEP46024.1| ribosome-binding factor A [Haemophilus influenzae 7P49H1]
gi|229811939|gb|EEP47633.1| ribosome-binding factor A [Haemophilus influenzae 6P18H1]
gi|260094476|gb|EEW78373.1| ribosome-binding factor A [Haemophilus influenzae NT127]
gi|301170027|emb|CBW29631.1| 30s ribosome binding factor [Haemophilus influenzae 10810]
gi|309750835|gb|ADO80819.1| Ribosome binding factor A [Haemophilus influenzae R2866]
gi|309973016|gb|ADO96217.1| Ribosome binding factor A [Haemophilus influenzae R2846]
gi|317432493|emb|CBY80850.1| 30s ribosome binding factor [Haemophilus influenzae F3031]
Length = 128
Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 65/112 (58%), Gaps = 7/112 (6%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD---V 66
+R+ RV +E++ + VIL E +D I ++++S+V +S DL A ++++ D
Sbjct: 6 KRSDRVAQEIQKEI-AVILQREVKDPRIG--MVTVSDVEVSSDLSYAKIFVTFLFDHDET 62
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ ++ + L +IR +G+++R LR VPE+RF YD SL +++ L+
Sbjct: 63 AIEQGMKGLEKASPYIRSLLGKAMR-LRIVPEIRFIYDQSLVEGMRMSNLVT 113
>gi|296330880|ref|ZP_06873355.1| ribosome-binding factor A [Bacillus subtilis subsp. spizizenii ATCC
6633]
gi|305674398|ref|YP_003866070.1| ribosome-binding factor A [Bacillus subtilis subsp. spizizenii str.
W23]
gi|296151885|gb|EFG92759.1| ribosome-binding factor A [Bacillus subtilis subsp. spizizenii ATCC
6633]
gi|305412642|gb|ADM37761.1| ribosome-binding factor A [Bacillus subtilis subsp. spizizenii str.
W23]
Length = 117
Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 61/110 (55%), Gaps = 5/110 (4%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
S RA RVGE+++ L I++ + +D I +++++V +S DL++A VYIS+ D
Sbjct: 2 SMRANRVGEQMKKEL-GDIISRKLKDPRIG--FLTVTDVRVSGDLQIAKVYISVLGDEKK 58
Query: 69 -DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ + L FIR IG +R LR PE+ F +D S+ ++ L+
Sbjct: 59 REEALKGLEKAKGFIRSEIGSRIR-LRKTPEIEFEFDESIDYGNRIETLI 107
>gi|295097656|emb|CBK86746.1| ribosome-binding factor A [Enterobacter cloacae subsp. cloacae NCTC
9394]
Length = 134
Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 61/115 (53%), Gaps = 6/115 (5%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
K R RV +E++ + +IL E +D + + ++S V MS DL A V+++ D
Sbjct: 3 KEFGRPQRVAQEMQKEI-ALILQREIKDPRVGM-MTTVSGVEMSRDLAYAKVFVTFLNDQ 60
Query: 67 SPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
D V I AL FIR +G+++R LR VPEL F YD SL +++ L+
Sbjct: 61 DEDAVKNGIKALQEASGFIRSLLGKAMR-LRIVPELTFFYDNSLVEGMRMSNLVT 114
>gi|281421510|ref|ZP_06252509.1| ribosome-binding factor A [Prevotella copri DSM 18205]
gi|281404582|gb|EFB35262.1| ribosome-binding factor A [Prevotella copri DSM 18205]
Length = 111
Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Query: 33 QDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRN 92
Q R++ ++S+++V +S DL + T Y+S+ + ++ +N N K IR +G+ +RN
Sbjct: 24 QTRMMHGVMVSVTKVRVSPDLSICTAYLSVFPSEKGEEILKNINANEKTIRFDLGKKVRN 83
Query: 93 -LRYVPELRFRYDTSLQSYWKLNALM 117
LR +PELRF D SL ++ L+
Sbjct: 84 QLRIIPELRFFLDDSLDYLEHIDELL 109
>gi|299823029|ref|ZP_07054915.1| ribosome-binding factor A [Listeria grayi DSM 20601]
gi|299816558|gb|EFI83796.1| ribosome-binding factor A [Listeria grayi DSM 20601]
Length = 114
Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 63/108 (58%), Gaps = 5/108 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
RA R+ E+++ L ILN + +D + ++I++V ++ DL+ AT+YIS L + +
Sbjct: 4 RANRIAEQMKKEL-GDILNRKLKDPRLG--FVTITDVEITGDLQQATIYISVLGEEKERE 60
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ AL FIR IG +R LR VPEL+F D S++ +++ L+
Sbjct: 61 NTLLALEKAHGFIRSEIGSRIR-LRKVPELQFALDGSIEYGNRIDELL 107
>gi|225427802|ref|XP_002270280.1| PREDICTED: hypothetical protein [Vitis vinifera]
Length = 223
Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 65/123 (52%), Gaps = 15/123 (12%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEF------------QDRLISRDVISISEVCMSVDLRV 55
N RR V +++R L ++L ++ DR +S + +IS+V +S DL+V
Sbjct: 60 NQRRVKMVAKQIRRELSDMLLTDKVLQFAVLPEAALGADRYLS-SLTTISDVEVSADLQV 118
Query: 56 ATVYISLPLDVSPDRV-ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLN 114
VY+S+ D V I+ L K++R +GR ++ LR PE+RF D SL+ ++
Sbjct: 119 VKVYVSVFGDEKGKEVAIAGLKSKAKYVRSELGRRMK-LRLTPEIRFVEDESLERGSRVI 177
Query: 115 ALM 117
A++
Sbjct: 178 AIL 180
>gi|73748749|ref|YP_307988.1| ribosome-binding factor A [Dehalococcoides sp. CBDB1]
gi|147669515|ref|YP_001214333.1| ribosome-binding factor A [Dehalococcoides sp. BAV1]
gi|289432775|ref|YP_003462648.1| ribosome-binding factor A [Dehalococcoides sp. GT]
gi|123619752|sp|Q3ZXU4|RBFA_DEHSC RecName: Full=Ribosome-binding factor A
gi|189039538|sp|A5FQR5|RBFA_DEHSB RecName: Full=Ribosome-binding factor A
gi|73660465|emb|CAI83072.1| ribosome-binding factor A [Dehalococcoides sp. CBDB1]
gi|146270463|gb|ABQ17455.1| ribosome-binding factor A [Dehalococcoides sp. BAV1]
gi|288946495|gb|ADC74192.1| ribosome-binding factor A [Dehalococcoides sp. GT]
Length = 118
Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 64/111 (57%), Gaps = 6/111 (5%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQD-RLISRDVISISEVCMSVDLRVATVYIS-LPLDV 66
SRR ++ + R+ + +L E +D RL + ++S++EV +S D+R A VY+S L D
Sbjct: 2 SRRIKKLNQLFRADIS-ALLQKEIRDPRLDT--LLSVNEVDISEDMRHANVYVSHLAGDE 58
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
D +++ALN F R I + ++RY+P F +D +++ +LN L+
Sbjct: 59 HKDEILAALNAAAGFFRTEIAKKT-DIRYMPVFHFVWDITIERGVRLNTLI 108
>gi|292669513|ref|ZP_06602939.1| ribosome-binding factor A [Selenomonas noxia ATCC 43541]
gi|292648876|gb|EFF66848.1| ribosome-binding factor A [Selenomonas noxia ATCC 43541]
Length = 133
Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 57/109 (52%), Gaps = 11/109 (10%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISR------DVISISEVCMSVDLRVATVY 59
P+ RRAL +VR + ++ E D + ++++ V + DLR A +Y
Sbjct: 3 PRERRRAL---AKVRVEKLQELMKQEISDIIFHELKDPRIGFVTVTSVACTEDLREAKIY 59
Query: 60 ISLPLDVSPDR-VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSL 107
+S+ D R ++ LN ++ F+R IG+ +R LR+ PE+ F DTSL
Sbjct: 60 VSVMGDEKKARDTLNGLNSSLGFVRREIGKRIR-LRFTPEISFALDTSL 107
>gi|268592824|ref|ZP_06127045.1| ribosome-binding factor A [Providencia rettgeri DSM 1131]
gi|291311609|gb|EFE52062.1| ribosome-binding factor A [Providencia rettgeri DSM 1131]
Length = 136
Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 64/121 (52%), Gaps = 13/121 (10%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K RA RV +E++ + +IL E +D I + ++S V +S DL V+++ +
Sbjct: 2 AKEFSRAQRVAQEMQKEI-AIILQREIKDPRIG--MATVSGVELSRDLAYGKVFVTF-FN 57
Query: 66 VSPDRV--------ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
++ D+ I ALN FIR IG+++R LR +PEL F YD SL +++ L+
Sbjct: 58 IANDKSEEEMVADGIKALNEASGFIRSLIGKAMR-LRIIPELTFEYDNSLVDGMRMSNLV 116
Query: 118 C 118
Sbjct: 117 S 117
>gi|88607832|ref|YP_505050.1| ribosome-binding factor A [Anaplasma phagocytophilum HZ]
gi|88598895|gb|ABD44365.1| ribosome-binding factor A [Anaplasma phagocytophilum HZ]
Length = 118
Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 63/112 (56%), Gaps = 7/112 (6%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDVSP 68
R+L+V ++ AL + L EF D +IS+SEV + DLR AT+++ + V
Sbjct: 10 HRSLKVSSVLKKALSELFLR-EFYDL---STLISVSEVKVGEDLRNATIFVVVRGKGVDG 65
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKL-NALMCL 119
D ++ ALN + +R + + L+ LRYVP L F+ D +++ ++ +AL L
Sbjct: 66 DEIVRALNASSNVVRKSVFKYLK-LRYVPRLHFKLDVEFENFLRISDALAVL 116
>gi|91762478|ref|ZP_01264443.1| Ribosome-binding factor A [Candidatus Pelagibacter ubique HTCC1002]
gi|91718280|gb|EAS84930.1| Ribosome-binding factor A [Candidatus Pelagibacter ubique HTCC1002]
Length = 122
Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 60/110 (54%), Gaps = 3/110 (2%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-DVS 67
S+R LRVGE +R +L + NE + + + I+++EV MS DL++A Y+ LPL
Sbjct: 10 SQRQLRVGEMIRQSLGMIFARNEAKVPNLETNTITVTEVKMSQDLKIAKAYV-LPLGGKD 68
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ VI L IR + + + ++Y+P++ F D S + K+ L+
Sbjct: 69 SELVIKKLKEYSFLIRKALSKKI-IMKYLPKILFAKDDSFEYAEKIENLI 117
>gi|91206050|ref|YP_538405.1| ribosome-binding factor A [Rickettsia bellii RML369-C]
gi|157826584|ref|YP_001495648.1| ribosome-binding factor A [Rickettsia bellii OSU 85-389]
gi|122425244|sp|Q1RH48|RBFA_RICBR RecName: Full=Ribosome-binding factor A
gi|166219400|sp|A8GUU4|RBFA_RICB8 RecName: Full=Ribosome-binding factor A
gi|91069594|gb|ABE05316.1| Ribosome-binding factor A [Rickettsia bellii RML369-C]
gi|157801888|gb|ABV78611.1| ribosome-binding factor A [Rickettsia bellii OSU 85-389]
Length = 123
Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 62/119 (52%), Gaps = 4/119 (3%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
MK +NS R +V + AL+ ++ + D + ++I+++ ++ DL++A Y
Sbjct: 1 MKKLTSENSHRQQKVASIINEALIEILHRGKMLDPRLYDCPLTITKIIVTADLKIANCYF 60
Query: 61 SLPLD--VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
LP + ++P + +LN + IR + + N++Y P++RF YD + K+ L+
Sbjct: 61 -LPFNTKLTPQEITESLNNSKNAIRNFVTGKI-NMKYSPDIRFHYDHGFDNALKVEQLL 117
>gi|299144049|ref|ZP_07037129.1| ribosome-binding factor A [Peptoniphilus sp. oral taxon 386 str.
F0131]
gi|298518534|gb|EFI42273.1| ribosome-binding factor A [Peptoniphilus sp. oral taxon 386 str.
F0131]
Length = 117
Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 64/111 (57%), Gaps = 4/111 (3%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDV 66
N++R ++ EEVR A+ I+ ++ +D I D+ISIS V ++ DL A VYIS L D
Sbjct: 2 NNKRTHQISEEVRRAISD-IVQHKLKDPRIP-DIISISHVDVTNDLSFAKVYISILDDDN 59
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ I+ +N FI+ + + L +R +PEL F D S++ K++ ++
Sbjct: 60 KIEEAINGINSAKGFIKRELAK-LVKIRAIPELIFVKDDSIEIGMKMSKII 109
>gi|242373562|ref|ZP_04819136.1| ribosome-binding factor A [Staphylococcus epidermidis M23864:W1]
gi|242348925|gb|EES40527.1| ribosome-binding factor A [Staphylococcus epidermidis M23864:W1]
Length = 118
Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 57/99 (57%), Gaps = 5/99 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
RA RVGE+++ +M ++ N + +D + ++I++V ++ DL A VY++ L + D
Sbjct: 7 RAERVGEQMKQEIMDIV-NTKVKDPRVG--FLTITDVELTNDLSQAKVYLTVLGNEKEVD 63
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
AL FI+ +G +R LR +P+L F YD S++
Sbjct: 64 NTFKALEKAKGFIKSELGSRMR-LRIIPDLTFEYDESIE 101
>gi|20807839|ref|NP_623010.1| ribosome-binding factor A [Thermoanaerobacter tengcongensis MB4]
gi|22096031|sp|Q8RA38|RBFA_THETN RecName: Full=Ribosome-binding factor A
gi|20516401|gb|AAM24614.1| Ribosome-binding factor A [Thermoanaerobacter tengcongensis MB4]
Length = 122
Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 61/108 (56%), Gaps = 4/108 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
R+ R+ EE++ + +IL E +D I + ++SI+++ ++ DLR A VY+S+ R
Sbjct: 7 RSHRLSEELKKEISKMILE-EIKDPRI-KAMVSITDIEVTKDLRYAKVYVSIYGSEEEKR 64
Query: 71 -VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
L +IR IGR ++ +RY PE+ F D S++ K++ ++
Sbjct: 65 ETFEGLKSAAGYIRHEIGRRIK-MRYTPEIIFELDHSIEYGAKISEIL 111
>gi|307129386|ref|YP_003881402.1| 30S ribosome binding factor [Dickeya dadantii 3937]
gi|306526915|gb|ADM96845.1| 30S ribosome binding factor [Dickeya dadantii 3937]
Length = 133
Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 63/115 (54%), Gaps = 7/115 (6%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
K R RV +E++ + +I+ E +D + + ++S V +S DL A V+++ D
Sbjct: 3 KEFSRTQRVAQEMQKEI-AIIIQREVKDPRVG--MATVSGVEVSRDLAYAKVFVTFLNDN 59
Query: 67 SPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
P++V + AL FIR +G+++R LR VPEL F YD SL +++ L+
Sbjct: 60 EPEQVKAGVKALQDASGFIRMLLGKAMR-LRVVPELTFSYDNSLVEGMRMSNLVT 113
>gi|260435606|ref|ZP_05789576.1| ribosome-binding factor A [Synechococcus sp. WH 8109]
gi|260413480|gb|EEX06776.1| ribosome-binding factor A [Synechococcus sp. WH 8109]
Length = 140
Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 59/111 (53%), Gaps = 3/111 (2%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS 67
RR RV +R + +++N +D + + ++SI+EV +S DL+ +++S+ +
Sbjct: 3 QGRRVERVAALIRKEVSQLMING-IRDERVHQGMVSITEVEVSGDLQHCKIFVSVFGEAQ 61
Query: 68 P-DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
D+V+ L F+RG +GR L +R PE+ F+ D L+ + L+
Sbjct: 62 ERDQVLEGLEAASGFLRGELGRRL-QMRRAPEVVFQLDRGLERGTSVLGLL 111
>gi|18310667|ref|NP_562601.1| ribosome-binding factor A [Clostridium perfringens str. 13]
gi|110800717|ref|YP_696372.1| ribosome-binding factor A [Clostridium perfringens ATCC 13124]
gi|110802728|ref|YP_698972.1| ribosome-binding factor A [Clostridium perfringens SM101]
gi|168211427|ref|ZP_02637052.1| ribosome-binding factor A [Clostridium perfringens B str. ATCC
3626]
gi|168214482|ref|ZP_02640107.1| ribosome-binding factor A [Clostridium perfringens CPE str. F4969]
gi|168216972|ref|ZP_02642597.1| ribosome-binding factor A [Clostridium perfringens NCTC 8239]
gi|169342675|ref|ZP_02863716.1| ribosome-binding factor A [Clostridium perfringens C str. JGS1495]
gi|182626365|ref|ZP_02954119.1| ribosome-binding factor A [Clostridium perfringens D str. JGS1721]
gi|20978576|sp|Q8XJR9|RBFA_CLOPE RecName: Full=Ribosome-binding factor A
gi|123049758|sp|Q0TPR8|RBFA_CLOP1 RecName: Full=Ribosome-binding factor A
gi|123146056|sp|Q0SSD5|RBFA_CLOPS RecName: Full=Ribosome-binding factor A
gi|18145348|dbj|BAB81391.1| ribosome-binding factor A [Clostridium perfringens str. 13]
gi|110675364|gb|ABG84351.1| ribosome-binding factor A [Clostridium perfringens ATCC 13124]
gi|110683229|gb|ABG86599.1| ribosome-binding factor A [Clostridium perfringens SM101]
gi|169299181|gb|EDS81251.1| ribosome-binding factor A [Clostridium perfringens C str. JGS1495]
gi|170710576|gb|EDT22758.1| ribosome-binding factor A [Clostridium perfringens B str. ATCC
3626]
gi|170714032|gb|EDT26214.1| ribosome-binding factor A [Clostridium perfringens CPE str. F4969]
gi|177908316|gb|EDT70864.1| ribosome-binding factor A [Clostridium perfringens D str. JGS1721]
gi|182380987|gb|EDT78466.1| ribosome-binding factor A [Clostridium perfringens NCTC 8239]
Length = 116
Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 59/109 (54%), Gaps = 5/109 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL--PLDVSP 68
R R+ EEVR + +I N RL + ++S+++V ++ DLR A V++SL D
Sbjct: 5 RGKRINEEVRKEVSDIIRNQIKDPRLTA--MVSVTQVEVTKDLRYAKVFVSLFAKNDEEK 62
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ + AL + FIR +G ++ LR PE+ F D S+ + + +L+
Sbjct: 63 EESLKALKSSAGFIRREVGNRVK-LRSTPEILFEEDNSIDNAMYIESLL 110
>gi|329123371|ref|ZP_08251935.1| ribosome-binding factor A [Haemophilus aegyptius ATCC 11116]
gi|327470953|gb|EGF16408.1| ribosome-binding factor A [Haemophilus aegyptius ATCC 11116]
Length = 128
Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 65/112 (58%), Gaps = 7/112 (6%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD---V 66
+R+ R+ +E++ + VIL E +D I ++++S+V +S DL A ++++ D
Sbjct: 6 KRSDRIAQEIQKEI-AVILQREVKDPRIG--MVTVSDVEVSSDLSYAKIFVTFLFDHDET 62
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ ++ + L +IR +G+++R LR VPE+RF YD SL +++ L+
Sbjct: 63 AIEQSMKGLEKASPYIRSLLGKAMR-LRIVPEIRFIYDQSLVEGMRMSNLVT 113
>gi|320540178|ref|ZP_08039833.1| 30s ribosome binding factor [Serratia symbiotica str. Tucson]
gi|320029844|gb|EFW11868.1| 30s ribosome binding factor [Serratia symbiotica str. Tucson]
Length = 136
Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 65/120 (54%), Gaps = 11/120 (9%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS---- 61
K R+ RV +E++ + +IL E +D I + ++S V +S DL A VY++
Sbjct: 2 AKEFSRSQRVAQEMQKEI-AIILQREIKDPRIG--MATVSGVEISRDLAYAKVYVTFLNV 58
Query: 62 LPLDVSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
L + PD+V I AL +IR +G+++R LR VPEL F YD SL +++ L+
Sbjct: 59 LAENHDPDQVTNGIKALQDAAGYIRTLLGKAMR-LRVVPELTFVYDNSLVEGMRMSNLVT 117
>gi|238927227|ref|ZP_04658987.1| ribosome-binding factor A [Selenomonas flueggei ATCC 43531]
gi|238885009|gb|EEQ48647.1| ribosome-binding factor A [Selenomonas flueggei ATCC 43531]
Length = 118
Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 49/82 (59%), Gaps = 4/82 (4%)
Query: 27 ILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR-VISALNCNIKFIRGR 85
I+ NE +D I ++++ V + DLR A +Y+S+ D R ++ LN ++ F+R
Sbjct: 15 IIFNELKDPRIG--FVTVTSVACTEDLREAKIYVSVMGDEKKARDTLNGLNSSLGFVRRE 72
Query: 86 IGRSLRNLRYVPELRFRYDTSL 107
IG+ +R LR+ PE+ F DTSL
Sbjct: 73 IGKRIR-LRFTPEISFALDTSL 93
>gi|251791034|ref|YP_003005755.1| ribosome-binding factor A [Dickeya zeae Ech1591]
gi|247539655|gb|ACT08276.1| ribosome-binding factor A [Dickeya zeae Ech1591]
Length = 133
Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 63/115 (54%), Gaps = 7/115 (6%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
K R RV +E++ + +I+ E +D + + ++S V +S DL A V+++ D
Sbjct: 3 KEFSRTQRVAQEMQKEI-AIIIQREVKDPRVG--MATVSGVEVSRDLAYAKVFVTFLNDN 59
Query: 67 SPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
P++V + AL FIR +G+++R LR VPEL F YD SL +++ L+
Sbjct: 60 EPEQVKAGVKALQDASGFIRMLLGKAMR-LRVVPELTFSYDNSLVEGMRMSNLVT 113
>gi|218290089|ref|ZP_03494251.1| ribosome-binding factor A [Alicyclobacillus acidocaldarius LAA1]
gi|218239798|gb|EED06987.1| ribosome-binding factor A [Alicyclobacillus acidocaldarius LAA1]
Length = 118
Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 54/97 (55%), Gaps = 5/97 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDVSPD 69
RA +V E+++ L IL +E +D I ++I+ V +S DL+ A VY+S+ +V +
Sbjct: 5 RAQKVAEQMKKELAD-ILQHELKDPRIG--FVTITRVEVSGDLQHAKVYVSVYGPEVEKE 61
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTS 106
+ L FIRG I R L ++R PEL FR D S
Sbjct: 62 ATLGVLTKAAGFIRGEIARRL-HMRIAPELVFRLDES 97
>gi|315652144|ref|ZP_07905142.1| ribosome-binding factor A [Eubacterium saburreum DSM 3986]
gi|315485636|gb|EFU76020.1| ribosome-binding factor A [Eubacterium saburreum DSM 3986]
Length = 123
Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 60/112 (53%), Gaps = 4/112 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLD 65
KNS ++ + EV + +I E +D ++ V S+++ ++ DL+ AT+Y+S L D
Sbjct: 3 KNSLKSTMINSEVMKTVSEII-RGEVKDPRVA-PVTSVTDAEVTTDLKYATIYVSVLGDD 60
Query: 66 VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ + L + FIR + R L NLR PEL+F D SL K++ L+
Sbjct: 61 EQSKKTLLGLKSSAGFIRKELARRL-NLRNTPELKFVLDESLAYGMKMDKLI 111
>gi|15602622|ref|NP_245694.1| ribosome-binding factor A [Pasteurella multocida subsp. multocida
str. Pm70]
gi|13431798|sp|P57872|RBFA_PASMU RecName: Full=Ribosome-binding factor A
gi|12721055|gb|AAK02841.1| RbfA [Pasteurella multocida subsp. multocida str. Pm70]
Length = 132
Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 66/116 (56%), Gaps = 15/116 (12%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPD 69
+R+ RV +E++ + VIL E +D I ++++S+V +S DL A V+++ D
Sbjct: 6 KRSDRVAQEIQKEI-AVILQREVKDPRIG--MVTVSDVEVSSDLAYAKVFVTFLFDNDE- 61
Query: 70 RVISALNCNIK-------FIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
SA++ +K +IR +G+++R LR VPE+RF YD SL +++ L+
Sbjct: 62 ---SAIDAGMKGLEKASPYIRSLLGKAMR-LRIVPEIRFIYDRSLIEGMRMSNLVS 113
>gi|242240748|ref|YP_002988929.1| ribosome-binding factor A [Dickeya dadantii Ech703]
gi|242132805|gb|ACS87107.1| ribosome-binding factor A [Dickeya dadantii Ech703]
Length = 132
Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 62/111 (55%), Gaps = 7/111 (6%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
R RV +E++ + +I+ E +D + + ++S V +S DL A V+++ D P++
Sbjct: 7 RTQRVAQEMQKEI-AIIIQREIKDPRVG--MATVSSVDVSRDLAYAKVFVTFLNDNEPEQ 63
Query: 71 V---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ I AL FIR +G+++R LR VPEL F YD SL +++ L+
Sbjct: 64 IKLGIKALQDASGFIRMLLGKAMR-LRIVPELTFAYDNSLVEGMRMSNLVS 113
>gi|52080272|ref|YP_079063.1| ribosome-binding factor A [Bacillus licheniformis ATCC 14580]
gi|52785649|ref|YP_091478.1| ribosome-binding factor A [Bacillus licheniformis ATCC 14580]
gi|319645948|ref|ZP_08000178.1| ribosome-binding factor A [Bacillus sp. BT1B_CT2]
gi|61214855|sp|Q65JH9|RBFA_BACLD RecName: Full=Ribosome-binding factor A
gi|52003483|gb|AAU23425.1| ribosome-binding factor A [Bacillus licheniformis ATCC 14580]
gi|52348151|gb|AAU40785.1| RbfA [Bacillus licheniformis ATCC 14580]
gi|317391698|gb|EFV72495.1| ribosome-binding factor A [Bacillus sp. BT1B_CT2]
Length = 117
Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 59/108 (54%), Gaps = 5/108 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP-D 69
RA RVGE+++ L I+ + +D I +++++V +S DL++A VYIS+ D +
Sbjct: 4 RATRVGEQMKKEL-GDIIGRKLKDPRIG--FLTVTDVRVSGDLQIAKVYISVLGDEKKRE 60
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ L FIR +G +R LR PE+ F +D S+ ++ L+
Sbjct: 61 ETLKGLAKAKGFIRSELGNRIR-LRKTPEIHFEFDESIDYGNRIETLI 107
>gi|294634516|ref|ZP_06713051.1| ribosome-binding factor A [Edwardsiella tarda ATCC 23685]
gi|291092030|gb|EFE24591.1| ribosome-binding factor A [Edwardsiella tarda ATCC 23685]
Length = 132
Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 62/111 (55%), Gaps = 7/111 (6%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
R RV +E++ + +IL E +D + + ++S V +S DL A V+++ D P+
Sbjct: 7 RTQRVAQEMQKEI-AIILQREVKDPRVG--MATVSGVEVSRDLAYAKVFVTFLNDGEPEA 63
Query: 71 V---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
V + AL FIR +G+++R LR VPEL F YD+SL +++ L+
Sbjct: 64 VKAGLKALQDASGFIRMLLGKAMR-LRVVPELTFSYDSSLVEGMRMSNLVS 113
>gi|269958720|ref|YP_003328507.1| ribosome-binding factor A [Anaplasma centrale str. Israel]
gi|269848549|gb|ACZ49193.1| ribosome-binding factor A [Anaplasma centrale str. Israel]
Length = 117
Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 62/118 (52%), Gaps = 6/118 (5%)
Query: 5 NPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP- 63
P R+L+V ++ AL + + EF D ++SIS V +S D R ATV++++
Sbjct: 5 TPSAGLRSLKVASVLKRALAQLFIR-EFYDL---SSMLSISGVKVSEDTRNATVFVAIGD 60
Query: 64 LDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
V V++ALN IR + R L+ LRYVP L F+ D ++ +++ +M K
Sbjct: 61 RSVDGGEVVAALNDASNSIRRAVFRYLK-LRYVPRLHFKLDVEFDNFLRISEIMAATK 117
>gi|271499175|ref|YP_003332200.1| ribosome-binding factor A [Dickeya dadantii Ech586]
gi|270342730|gb|ACZ75495.1| ribosome-binding factor A [Dickeya dadantii Ech586]
Length = 133
Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 63/115 (54%), Gaps = 7/115 (6%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
K R RV +E++ + +I+ E +D + + ++S V +S DL A V+++ D
Sbjct: 3 KEFSRTQRVAQEMQKEI-AIIIQREVKDPRVG--MATVSGVEVSRDLAYAKVFVTFLNDN 59
Query: 67 SPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
P++V + AL FIR +G+++R LR VPEL F YD SL +++ L+
Sbjct: 60 EPEQVKAGVKALQDASGFIRMLLGKAMR-LRVVPELTFSYDNSLVEGMRMSNLVT 113
>gi|71083095|ref|YP_265814.1| ribosome-binding factor A [Candidatus Pelagibacter ubique HTCC1062]
gi|123647144|sp|Q4FNM8|RBFA_PELUB RecName: Full=Ribosome-binding factor A
gi|71062208|gb|AAZ21211.1| Ribosome-binding factor A [Candidatus Pelagibacter ubique HTCC1062]
Length = 122
Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 62/111 (55%), Gaps = 5/111 (4%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-DVS 67
S+R LRVGE +R +L + NE + + + I+++EV MS DL++A Y+ LPL
Sbjct: 10 SQRQLRVGEMIRQSLGMIFARNEAKVPNLETNTITVTEVKMSQDLKIAKAYV-LPLGGKD 68
Query: 68 PDRVISAL-NCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ VI L C+ IR + + + ++Y+P++ F D S + K+ L+
Sbjct: 69 SELVIKKLKECSF-LIRKALSKKI-IMKYLPKILFAKDDSFEYAEKIENLI 117
>gi|205373416|ref|ZP_03226220.1| ribosome-binding factor A [Bacillus coahuilensis m4-4]
Length = 117
Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 63/109 (57%), Gaps = 4/109 (3%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
S R+ R+GE+++ L I++ + +D I +++++V ++ DL+ A VYI++ D
Sbjct: 2 SLRSNRIGEQMKKEL-GDIISRKIKDPRIG--FVTVTDVQVTGDLQQAKVYITVLDDSKR 58
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ + L+ FIR IG +R LR PEL F +D S+Q ++ +++
Sbjct: 59 EDTLKGLSKAKGFIRSEIGSRIR-LRKTPELLFEFDESIQYGNRIESII 106
>gi|120556254|ref|YP_960605.1| ribosome-binding factor A [Marinobacter aquaeolei VT8]
gi|166218447|sp|A1U5Z9|RBFA_MARAV RecName: Full=Ribosome-binding factor A
gi|120326103|gb|ABM20418.1| ribosome-binding factor A [Marinobacter aquaeolei VT8]
Length = 143
Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 66/114 (57%), Gaps = 11/114 (9%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP-----LD 65
R R+G++++ L +I E +D + ++++++V +S DL A +YISL +
Sbjct: 7 RVDRIGDQMQRELAQLI-QREVKDPRVG--MVTVNDVKVSRDLGYADIYISLLSTEELTE 63
Query: 66 VSPD--RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
SP+ ++ LN F+RG++GR+++ LR VP LRF +D L K++ L+
Sbjct: 64 DSPEVQDSLTVLNKASGFLRGQVGRAMK-LRVVPHLRFHFDKLLGQSRKMDRLI 116
>gi|304316861|ref|YP_003852006.1| ribosome-binding factor A [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302778363|gb|ADL68922.1| ribosome-binding factor A [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 119
Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 56/99 (56%), Gaps = 4/99 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDVSPD 69
R+ R+ EE++ + +I E +D IS ++ SI+++ ++ DLR A +YIS+ D
Sbjct: 4 RSGRLSEEIKKEVSKMIFE-EIKDPRIS-NMTSITDIEVTKDLRYAKIYISVYGNDDEKK 61
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
+ L FIR +G+ ++ LRY PEL F D S++
Sbjct: 62 STLEGLKSATGFIRHELGKRIK-LRYTPELIFEIDNSIE 99
>gi|37523601|ref|NP_926978.1| ribosome binding facror A [Gloeobacter violaceus PCC 7421]
gi|39931738|sp|Q7NE48|RBFA_GLOVI RecName: Full=Ribosome-binding factor A
gi|35214606|dbj|BAC91973.1| ribosome binding facror A [Gloeobacter violaceus PCC 7421]
Length = 129
Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 61/111 (54%), Gaps = 2/111 (1%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS 67
+ R RVGE ++ + ++L + +D + ++S+++V ++ DLR A +++S+
Sbjct: 2 KTHRPARVGELIKREVSDMLLRGQIKDPRVGAGLVSVTDVEVTGDLRQAKIFVSIFGTPE 61
Query: 68 PDRV-ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
++ + AL F+R IG +R LRY PE+ F D SL+ ++ L+
Sbjct: 62 AQKLTMMALAEVTGFVRQEIGHRIR-LRYTPEIAFVQDRSLERGARITRLI 111
>gi|325955537|ref|YP_004239197.1| ribosome-binding factor A [Weeksella virosa DSM 16922]
gi|323438155|gb|ADX68619.1| Ribosome-binding factor A [Weeksella virosa DSM 16922]
Length = 119
Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 58/108 (53%), Gaps = 3/108 (2%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS 67
+S R +VG+ + L ++ L +++S++EV ++ DL +A V+IS+ +
Sbjct: 2 DSNRQQKVGKLFQEELAEAF--RKWASELFPGNLVSVTEVKVTPDLSIAKVFISIFPNDK 59
Query: 68 PDRVISALNCNIKFIRGRIGR-SLRNLRYVPELRFRYDTSLQSYWKLN 114
D ++ +N + RG + + + +N+R PEL FR D +L K++
Sbjct: 60 KDEILQEINTQAPYFRGILSKGAAKNMRLTPELIFRLDPTLDEMDKID 107
>gi|260771813|ref|ZP_05880731.1| ribosome-binding factor A [Vibrio metschnikovii CIP 69.14]
gi|260613105|gb|EEX38306.1| ribosome-binding factor A [Vibrio metschnikovii CIP 69.14]
Length = 131
Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 64/115 (55%), Gaps = 6/115 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL- 64
PK R RV ++++ L +IL E +D + +++IS+V +S DL A V+++
Sbjct: 2 PKEFSRTQRVAQQLQKEL-AMILQREVRDSRLG--MVTISDVEVSRDLAYAKVFVTFLCI 58
Query: 65 -DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ +P+ I AL + IR +G+ +R LR PE+RF YD +L +++ L+
Sbjct: 59 GEQTPESCIKALREHEVHIRMMLGKRIR-LRLTPEIRFHYDNTLVEGMRMSNLVT 112
>gi|304437174|ref|ZP_07397135.1| ribosome-binding factor A [Selenomonas sp. oral taxon 149 str.
67H29BP]
gi|304369836|gb|EFM23500.1| ribosome-binding factor A [Selenomonas sp. oral taxon 149 str.
67H29BP]
Length = 136
Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 49/82 (59%), Gaps = 4/82 (4%)
Query: 27 ILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR-VISALNCNIKFIRGR 85
I+ NE +D I ++++ V + DLR A +Y+S+ D R ++ LN ++ F+R
Sbjct: 33 IIFNELKDPRIG--FVTVTSVACTEDLREAKIYVSVMGDEKKARDTLNGLNSSLGFVRRE 90
Query: 86 IGRSLRNLRYVPELRFRYDTSL 107
IG+ +R LR+ PE+ F DTSL
Sbjct: 91 IGKRIR-LRFTPEISFSLDTSL 111
>gi|288803485|ref|ZP_06408917.1| ribosome-binding factor A [Prevotella melaninogenica D18]
gi|302346037|ref|YP_003814390.1| ribosome-binding factor A [Prevotella melaninogenica ATCC 25845]
gi|288334095|gb|EFC72538.1| ribosome-binding factor A [Prevotella melaninogenica D18]
gi|302149916|gb|ADK96178.1| ribosome-binding factor A [Prevotella melaninogenica ATCC 25845]
Length = 111
Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 33 QDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRN 92
Q R++ ++S++ V +S DL + T Y+S+ D ++ +N N K IR +G+ + N
Sbjct: 24 QTRMMHGVLVSVTRVKVSPDLSICTAYLSIFPSEKGDEILKNINANEKTIRYDLGQRVHN 83
Query: 93 -LRYVPELRFRYDTSLQSYWKLNALM 117
LR +PELRF D SL +++ L+
Sbjct: 84 QLRIIPELRFFIDDSLDYLERIDELL 109
>gi|260593343|ref|ZP_05858801.1| ribosome-binding factor A [Prevotella veroralis F0319]
gi|260534619|gb|EEX17236.1| ribosome-binding factor A [Prevotella veroralis F0319]
Length = 111
Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 33 QDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRN 92
Q R++ ++S++ V +S DL + T Y+S+ D ++ +N N K IR +G+ + N
Sbjct: 24 QTRMMHGVLVSVTRVKVSPDLSICTAYLSIFPSEKGDELLKNINANEKTIRYELGQRVHN 83
Query: 93 -LRYVPELRFRYDTSLQSYWKLNALM 117
LR +PELRF D SL +++ L+
Sbjct: 84 QLRIIPELRFFIDDSLDYIERIDELL 109
>gi|28210962|ref|NP_781906.1| ribosome-binding factor A [Clostridium tetani E88]
gi|32171612|sp|Q895J7|RBFA_CLOTE RecName: Full=Ribosome-binding factor A
gi|28203401|gb|AAO35843.1| ribosome-binding factor A [Clostridium tetani E88]
Length = 121
Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 63/108 (58%), Gaps = 4/108 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV-SPD 69
RA R+ EEV+ + +I + +D IS ++S+++V ++ D R A VY+S+ D S +
Sbjct: 5 RAGRINEEVKKEISSII-RMDLKDPRISA-MVSVTKVDVTKDQRYAKVYVSIFGDEKSKE 62
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ AL + FIR +G ++ LRY PE+ + D S++ +++++
Sbjct: 63 ETLEALKSSSGFIRREVGHRIK-LRYTPEIIIQNDDSIEHGMHIDSIL 109
>gi|16078728|ref|NP_389547.1| ribosome-binding factor A [Bacillus subtilis subsp. subtilis str.
168]
gi|221309543|ref|ZP_03591390.1| ribosome-binding factor A [Bacillus subtilis subsp. subtilis str.
168]
gi|221313867|ref|ZP_03595672.1| ribosome-binding factor A [Bacillus subtilis subsp. subtilis str.
NCIB 3610]
gi|221318790|ref|ZP_03600084.1| ribosome-binding factor A [Bacillus subtilis subsp. subtilis str.
JH642]
gi|221323062|ref|ZP_03604356.1| ribosome-binding factor A [Bacillus subtilis subsp. subtilis str.
SMY]
gi|321315432|ref|YP_004207719.1| ribosome-binding factor A [Bacillus subtilis BSn5]
gi|418464|sp|P32731|RBFA_BACSU RecName: Full=Ribosome-binding factor A
gi|580902|emb|CAA79236.1| ORF6 [Bacillus subtilis subsp. subtilis str. 168]
gi|2634037|emb|CAB13538.1| ribosome-binding factor A [Bacillus subtilis subsp. subtilis str.
168]
gi|320021706|gb|ADV96692.1| ribosome-binding factor A [Bacillus subtilis BSn5]
Length = 117
Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 61/110 (55%), Gaps = 5/110 (4%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
S RA RVGE+++ L I++ + +D I +++++V +S DL++A VYIS+ D
Sbjct: 2 SMRANRVGEQMKKEL-GDIISRKLKDPRIG--FLTVTDVRVSGDLQIAKVYISVLGDEKK 58
Query: 69 -DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ + L FIR IG +R LR PE+ F +D S+ ++ L+
Sbjct: 59 REEALKGLAKAKGFIRSEIGSRIR-LRKTPEIEFEFDESIDYGNRIETLI 107
>gi|330836564|ref|YP_004411205.1| Ribosome-binding factor A [Spirochaeta coccoides DSM 17374]
gi|329748467|gb|AEC01823.1| Ribosome-binding factor A [Spirochaeta coccoides DSM 17374]
Length = 124
Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 61/105 (58%), Gaps = 3/105 (2%)
Query: 14 RVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP-DRVI 72
R+ VR A+ +I++ E ++ L++ ++S++ V +S D ATVY+S P+D + I
Sbjct: 8 RIESRVREAVGMLIVSGEIKNPLLNT-LVSVTRVVVSKDNAYATVYLSAPIDDHDLECSI 66
Query: 73 SALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+AL FI+ R+G L R P L F+ D +++ ++NAL+
Sbjct: 67 TALTKAAGFIQKRVGDFL-GTRNTPRLTFKADVAVRDGDEINALL 110
>gi|322514413|ref|ZP_08067456.1| ribosome-binding factor A [Actinobacillus ureae ATCC 25976]
gi|322119661|gb|EFX91719.1| ribosome-binding factor A [Actinobacillus ureae ATCC 25976]
Length = 137
Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 65/112 (58%), Gaps = 7/112 (6%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD---V 66
+R+ RV +E++ + VIL E +D I ++++S+V +S DL A ++++ D
Sbjct: 16 KRSDRVAQELQKEI-AVILQREVKDPRIG--MVTVSDVEVSRDLAYAKIFVTFLFDNDQS 72
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ ++ + L +IR +G+++R LR VPELRF YD SL +++ L+
Sbjct: 73 AIEQGMKGLEKASPYIRSLVGKAMR-LRIVPELRFIYDQSLVEGMRMSNLVS 123
>gi|238918425|ref|YP_002931939.1| ribosome-binding factor A [Edwardsiella ictaluri 93-146]
gi|259551976|sp|C5BFB8|RBFA_EDWI9 RecName: Full=Ribosome-binding factor A
gi|238867993|gb|ACR67704.1| ribosome-binding factor A, putative [Edwardsiella ictaluri 93-146]
Length = 132
Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 61/111 (54%), Gaps = 7/111 (6%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
R RV +E++ + +IL E +D + + ++S V +S DL A V+++ D P+
Sbjct: 7 RTQRVAQEMQKEI-AIILQREVKDPRVG--MATVSGVEVSRDLAYAKVFVTFLNDGEPET 63
Query: 71 VIS---ALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
V S AL FIR +G+++R LR VPEL F YD SL +++ L+
Sbjct: 64 VKSGLKALQDASGFIRMLLGKAMR-LRVVPELTFAYDASLVEGMRMSNLVS 113
>gi|270265060|ref|ZP_06193323.1| ribosome-binding factor A [Serratia odorifera 4Rx13]
gi|270040994|gb|EFA14095.1| ribosome-binding factor A [Serratia odorifera 4Rx13]
Length = 136
Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 63/119 (52%), Gaps = 11/119 (9%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS----L 62
K R RV +E++ + +IL E +D I + ++S V +S DL A VY++ L
Sbjct: 3 KEFSRGQRVAQEMQKEI-AIILQREVKDPRIG--MATVSGVEVSRDLAYAKVYVTFLNVL 59
Query: 63 PLDVSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ PD V I AL +IR +G+++R LR VPEL F YD SL +++ L+
Sbjct: 60 TENADPDLVPKGIKALEDASGYIRTLLGKAMR-LRVVPELTFAYDNSLVEGMRMSNLVT 117
>gi|78213858|ref|YP_382637.1| ribosome-binding factor A [Synechococcus sp. CC9605]
gi|123577495|sp|Q3AH50|RBFA_SYNSC RecName: Full=Ribosome-binding factor A
gi|78198317|gb|ABB36082.1| ribosome-binding factor A [Synechococcus sp. CC9605]
Length = 140
Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 58/111 (52%), Gaps = 3/111 (2%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS 67
RR RV +R + +++N +D + ++SI+EV +S DL+ +++S+ +
Sbjct: 3 QGRRVERVAALIRKEVSELMING-IRDERVHHGMVSITEVEVSGDLQHCKIFVSVFGEAQ 61
Query: 68 P-DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
D+V+ L F+RG +GR L +R PE+ F+ D L+ + L+
Sbjct: 62 ERDQVLEGLQAASGFLRGELGRRL-QMRRAPEVVFQLDRGLERGTSVLGLL 111
>gi|121998527|ref|YP_001003314.1| ribosome-binding factor A [Halorhodospira halophila SL1]
gi|166218443|sp|A1WXV0|RBFA_HALHL RecName: Full=Ribosome-binding factor A
gi|121589932|gb|ABM62512.1| ribosome-binding factor A [Halorhodospira halophila SL1]
Length = 126
Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 61/113 (53%), Gaps = 6/113 (5%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL--PL 64
K+ R+ R+ E++R L VI ++ R+ S ++ISEV +S DL ATVY+++
Sbjct: 3 KDYPRSRRIAEQLRRELAEVIRDDVDDPRVGS---VTISEVQVSRDLAHATVYVTVLGAE 59
Query: 65 DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
I LN F+R ++ R +R R P LRF +DT+ +L+AL+
Sbjct: 60 AAEAQAGIDILNKAHGFLRSQVARRIRAKR-TPSLRFLHDTAFDRGARLSALI 111
>gi|311068188|ref|YP_003973111.1| ribosome-binding factor A [Bacillus atrophaeus 1942]
gi|310868705|gb|ADP32180.1| ribosome-binding factor A [Bacillus atrophaeus 1942]
Length = 117
Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 61/110 (55%), Gaps = 5/110 (4%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
S RA RVGE+++ L I++ + +D I +++++V ++ DL++A VYIS+ D
Sbjct: 2 SMRANRVGEQMKKEL-GDIISRKLKDPRIG--FLTVTDVRVTGDLQIAKVYISVLGDEKK 58
Query: 69 -DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ + L FIR IG +R LR PE+ F +D S+ ++ L+
Sbjct: 59 REEALKGLEKAKGFIRSEIGSRIR-LRKTPEIEFEFDESIDYGNRIETLI 107
>gi|119944580|ref|YP_942260.1| ribosome-binding factor A [Psychromonas ingrahamii 37]
gi|166219396|sp|A1ST46|RBFA_PSYIN RecName: Full=Ribosome-binding factor A
gi|119863184|gb|ABM02661.1| ribosome-binding factor A [Psychromonas ingrahamii 37]
Length = 133
Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 63/115 (54%), Gaps = 6/115 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL- 64
K R RV ++V+ L IL E +D I +++IS V ++ DL A V+++
Sbjct: 2 AKEYSRTSRVSQQVQKELAR-ILQQEVKDPRIG--MVTISGVDVTRDLAYAKVFVTFLTV 58
Query: 65 -DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
D + D + LN +IR +G+++R LR VPE+RF +D++L +++ L+
Sbjct: 59 GDQTNDESLEGLNAAAGYIRRLLGKAMR-LRIVPEVRFCFDSTLTEGLRISELVS 112
>gi|319776233|ref|YP_004138721.1| 30s ribosome binding factor [Haemophilus influenzae F3047]
gi|317450824|emb|CBY87047.1| 30s ribosome binding factor [Haemophilus influenzae F3047]
Length = 128
Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 64/112 (57%), Gaps = 7/112 (6%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP- 68
+R+ R+ +E++ + VIL E +D I ++++S+V +S DL A ++++ D
Sbjct: 6 KRSDRIAQEIQKEI-AVILQREVKDPRIG--MVTVSDVEVSSDLSYAKIFVTFLFDHDET 62
Query: 69 --DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
++ + L +IR +G+++R LR VPE+RF YD SL +++ L+
Sbjct: 63 VIEQSMKGLEKASPYIRSLLGKAMR-LRIVPEIRFIYDQSLVEGMRMSNLVT 113
>gi|226226963|ref|YP_002761069.1| ribosome-binding factor A [Gemmatimonas aurantiaca T-27]
gi|259551997|sp|C1A8N9|RBFA_GEMAT RecName: Full=Ribosome-binding factor A
gi|226090154|dbj|BAH38599.1| ribosome-binding factor A [Gemmatimonas aurantiaca T-27]
Length = 146
Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 58/110 (52%), Gaps = 4/110 (3%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPD 69
RR RV E +R + + R+ R ++++ V ++ DLR ATV++SL D +
Sbjct: 5 RRPDRVAEAIREEVATFLSEGAKDPRI--RAFVTVTAVEVTRDLRHATVFVSLMGDDADK 62
Query: 70 RVISA-LNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ +A L +R ++G+SLR LR PE+ FR D S+ ++ L+
Sbjct: 63 KSTTAGLASVASHLRSQLGKSLR-LRSAPEIHFRTDESVARASRIEHLLA 111
>gi|160880904|ref|YP_001559872.1| ribosome-binding factor A [Clostridium phytofermentans ISDg]
gi|189039535|sp|A9KNW3|RBFA_CLOPH RecName: Full=Ribosome-binding factor A
gi|160429570|gb|ABX43133.1| ribosome-binding factor A [Clostridium phytofermentans ISDg]
Length = 136
Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 59/103 (57%), Gaps = 4/103 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLD 65
KNS + R+ +EV+ L +I + E +D I+ + SI V ++ DL+ A VYIS L +
Sbjct: 3 KNSIKNTRINQEVQKELSMLI-SRELKDPRIN-PMTSIVAVEVAPDLKTAKVYISVLGDE 60
Query: 66 VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
+S ++ L F+RG++ R + NLR PEL F D S++
Sbjct: 61 LSQKNTLAGLKSAAPFLRGQLARGI-NLRNTPELLFVVDQSIE 102
>gi|296125371|ref|YP_003632623.1| ribosome-binding factor A [Brachyspira murdochii DSM 12563]
gi|296017187|gb|ADG70424.1| ribosome-binding factor A [Brachyspira murdochii DSM 12563]
Length = 122
Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 54/102 (52%), Gaps = 8/102 (7%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
S R LRV E ++ L +I+ E +D I ++++I++V + DL+ A VY +
Sbjct: 3 SHRILRVNENIKQTLSLIIMR-EIEDPRIKNNLVTITKVDTAKDLKNAKVYFVCLNEDKK 61
Query: 69 DRVISALNCNIKFIRGRIGRSLR---NLRYVPELRFRYDTSL 107
+ V++ LN +G I LR +RYVP L F YD +L
Sbjct: 62 NEVLNGLNS----AKGVIFSYLRKQLTIRYVPNLTFHYDKNL 99
>gi|291484220|dbj|BAI85295.1| ribosome-binding factor A [Bacillus subtilis subsp. natto BEST195]
Length = 115
Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 60/108 (55%), Gaps = 5/108 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP-D 69
RA RVGE+++ L I++ + +D I +++++V +S DL++A VYIS+ D +
Sbjct: 2 RANRVGEQMKKEL-GDIISRKLKDPRIG--FLTVTDVRVSGDLQIAKVYISVLGDEKKRE 58
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ L FIR IG +R LR PE+ F +D S+ ++ L+
Sbjct: 59 EALKGLAKAKGFIRSEIGSRIR-LRKTPEIEFEFDESIDYGNRIETLI 105
>gi|317129160|ref|YP_004095442.1| ribosome-binding factor A [Bacillus cellulosilyticus DSM 2522]
gi|315474108|gb|ADU30711.1| ribosome-binding factor A [Bacillus cellulosilyticus DSM 2522]
Length = 116
Score = 50.1 bits (118), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 61/108 (56%), Gaps = 5/108 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP-D 69
RA RVGE+++ + +I E +D + I+++ V ++ DL+ AT +I++ D
Sbjct: 5 RANRVGEQIKKEITEII-QREIKDPRVG--FITVTAVDVTGDLQQATAFITVYGDDDQRS 61
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
++AL FIR IG+ ++ LR P+L F++D S++ ++ L+
Sbjct: 62 NTLAALEKAKGFIRSEIGKRIQ-LRKTPDLSFKFDESIERGNRIEELL 108
>gi|33152522|ref|NP_873875.1| ribosome-binding factor A [Haemophilus ducreyi 35000HP]
gi|38372437|sp|Q7VLI3|RBFA_HAEDU RecName: Full=Ribosome-binding factor A
gi|33148745|gb|AAP96264.1| ribosome binding factor A [Haemophilus ducreyi 35000HP]
Length = 126
Score = 50.1 bits (118), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 64/112 (57%), Gaps = 7/112 (6%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPD 69
+R+ RV +E++ + VIL E +D I ++++S+V +S DL A ++++ D D
Sbjct: 6 KRSDRVAQELQKEI-AVILQREVKDPRIG--MVTVSDVEVSRDLAYAKIFVTFLFDNDQD 62
Query: 70 RVISALNCNIK---FIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ + K +IR +G+++R LR +PELRF YD SL +++ L+
Sbjct: 63 IIAQGMKGLEKAGPYIRTLLGKAMR-LRILPELRFIYDQSLVEGMRMSNLVS 113
>gi|32033693|ref|ZP_00133988.1| COG0858: Ribosome-binding factor A [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|126208122|ref|YP_001053347.1| ribosome-binding factor A [Actinobacillus pleuropneumoniae L20]
gi|165976052|ref|YP_001651645.1| ribosome-binding factor A [Actinobacillus pleuropneumoniae serovar
3 str. JL03]
gi|190149950|ref|YP_001968475.1| ribosome-binding factor A [Actinobacillus pleuropneumoniae serovar
7 str. AP76]
gi|303249645|ref|ZP_07335850.1| ribosome-binding factor A [Actinobacillus pleuropneumoniae serovar
6 str. Femo]
gi|303253710|ref|ZP_07339847.1| ribosome-binding factor A [Actinobacillus pleuropneumoniae serovar
2 str. 4226]
gi|307245496|ref|ZP_07527583.1| Ribosome-binding factor A [Actinobacillus pleuropneumoniae serovar
1 str. 4074]
gi|307247610|ref|ZP_07529653.1| Ribosome-binding factor A [Actinobacillus pleuropneumoniae serovar
2 str. S1536]
gi|307249839|ref|ZP_07531815.1| Ribosome-binding factor A [Actinobacillus pleuropneumoniae serovar
4 str. M62]
gi|307252191|ref|ZP_07534089.1| Ribosome-binding factor A [Actinobacillus pleuropneumoniae serovar
6 str. Femo]
gi|307254450|ref|ZP_07536287.1| Ribosome-binding factor A [Actinobacillus pleuropneumoniae serovar
9 str. CVJ13261]
gi|307256662|ref|ZP_07538441.1| Ribosome-binding factor A [Actinobacillus pleuropneumoniae serovar
10 str. D13039]
gi|307258909|ref|ZP_07540640.1| Ribosome-binding factor A [Actinobacillus pleuropneumoniae serovar
11 str. 56153]
gi|307261097|ref|ZP_07542776.1| Ribosome-binding factor A [Actinobacillus pleuropneumoniae serovar
12 str. 1096]
gi|307263278|ref|ZP_07544896.1| Ribosome-binding factor A [Actinobacillus pleuropneumoniae serovar
13 str. N273]
gi|166218414|sp|A3N006|RBFA_ACTP2 RecName: Full=Ribosome-binding factor A
gi|238687490|sp|B0BNR6|RBFA_ACTPJ RecName: Full=Ribosome-binding factor A
gi|238692383|sp|B3H164|RBFA_ACTP7 RecName: Full=Ribosome-binding factor A
gi|126096914|gb|ABN73742.1| ribosome-binding factor A [Actinobacillus pleuropneumoniae serovar
5b str. L20]
gi|165876153|gb|ABY69201.1| ribosome binding factor A [Actinobacillus pleuropneumoniae serovar
3 str. JL03]
gi|189915081|gb|ACE61333.1| ribosome-binding factor A [Actinobacillus pleuropneumoniae serovar
7 str. AP76]
gi|302647435|gb|EFL77654.1| ribosome-binding factor A [Actinobacillus pleuropneumoniae serovar
2 str. 4226]
gi|302651457|gb|EFL81608.1| ribosome-binding factor A [Actinobacillus pleuropneumoniae serovar
6 str. Femo]
gi|306853555|gb|EFM85773.1| Ribosome-binding factor A [Actinobacillus pleuropneumoniae serovar
1 str. 4074]
gi|306855880|gb|EFM88040.1| Ribosome-binding factor A [Actinobacillus pleuropneumoniae serovar
2 str. S1536]
gi|306858141|gb|EFM90221.1| Ribosome-binding factor A [Actinobacillus pleuropneumoniae serovar
4 str. M62]
gi|306860335|gb|EFM92350.1| Ribosome-binding factor A [Actinobacillus pleuropneumoniae serovar
6 str. Femo]
gi|306862591|gb|EFM94548.1| Ribosome-binding factor A [Actinobacillus pleuropneumoniae serovar
9 str. CVJ13261]
gi|306864710|gb|EFM96614.1| Ribosome-binding factor A [Actinobacillus pleuropneumoniae serovar
10 str. D13039]
gi|306866933|gb|EFM98790.1| Ribosome-binding factor A [Actinobacillus pleuropneumoniae serovar
11 str. 56153]
gi|306869229|gb|EFN01027.1| Ribosome-binding factor A [Actinobacillus pleuropneumoniae serovar
12 str. 1096]
gi|306871340|gb|EFN03066.1| Ribosome-binding factor A [Actinobacillus pleuropneumoniae serovar
13 str. N273]
Length = 127
Score = 50.1 bits (118), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 64/112 (57%), Gaps = 7/112 (6%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP- 68
+R+ RV +E++ + VIL E +D I ++++S+V +S DL A ++++ D
Sbjct: 6 KRSDRVAQELQKEI-AVILQREVKDPRIG--MVTVSDVEVSRDLAYAKIFVTFLFDNDQS 62
Query: 69 --DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
++ + L +IR +G+++R LR VPELRF YD SL +++ L+
Sbjct: 63 VIEQGMKGLEKASPYIRSLVGKAMR-LRIVPELRFIYDQSLVEGMRMSNLVS 113
>gi|254361247|ref|ZP_04977390.1| ribosome binding factor A [Mannheimia haemolytica PHL213]
gi|261492529|ref|ZP_05989082.1| ribosome binding factor A [Mannheimia haemolytica serotype A2 str.
BOVINE]
gi|261496804|ref|ZP_05993178.1| ribosome binding factor A [Mannheimia haemolytica serotype A2 str.
OVINE]
gi|153092743|gb|EDN73786.1| ribosome binding factor A [Mannheimia haemolytica PHL213]
gi|261307551|gb|EEY08880.1| ribosome binding factor A [Mannheimia haemolytica serotype A2 str.
OVINE]
gi|261311688|gb|EEY12838.1| ribosome binding factor A [Mannheimia haemolytica serotype A2 str.
BOVINE]
Length = 126
Score = 50.1 bits (118), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 64/112 (57%), Gaps = 7/112 (6%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPD 69
+R+ RV +E++ + VIL E +D I ++++S+V +S DL A ++++ D +
Sbjct: 6 KRSDRVAQELQKEV-AVILQREVKDPRIG--MVTVSDVEVSRDLAYAKIFVTFLFDNDAE 62
Query: 70 RV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ + L +IR +G+++R LR VPELRF YD SL +++ L+
Sbjct: 63 AIKQGMQGLEKASPYIRTLLGKAMR-LRIVPELRFIYDESLVEGMRMSNLVS 113
>gi|307546726|ref|YP_003899205.1| ribosome-binding factor A [Halomonas elongata DSM 2581]
gi|307218750|emb|CBV44020.1| ribosome-binding factor A [Halomonas elongata DSM 2581]
Length = 139
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 66/111 (59%), Gaps = 7/111 (6%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPD 69
+R RV ++++ L V++ E +D + ++++S V +S DL A V+++L + +
Sbjct: 5 KRTDRVADQLQKEL-AVLIQREIKDPRLG--MVTVSGVEVSRDLGYADVHVTLLGEQDAE 61
Query: 70 RV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
R+ ++ L F+R +I R ++ LR+VPELRF YD S+ +L++L+
Sbjct: 62 RIKENMAVLKRAAGFLRSQIARRIK-LRHVPELRFHYDESVVRGQRLSSLI 111
>gi|320355001|ref|YP_004196340.1| ribosome-binding factor A [Desulfobulbus propionicus DSM 2032]
gi|320123503|gb|ADW19049.1| ribosome-binding factor A [Desulfobulbus propionicus DSM 2032]
Length = 131
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 54/110 (49%), Gaps = 4/110 (3%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS 67
S R RV E +++ L ++L RL + +S V ++ DL+ A VY ++P
Sbjct: 14 ESSRPKRVAEAIKNELTILLLQQVADPRLSG---VLVSRVVVTPDLKQAKVYFTVPAGKD 70
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ ++ F R + ++L NLRY PEL F YD + ++++L
Sbjct: 71 SGPALKGMHRAKGFFRSHLAKTL-NLRYTPELLFYYDNLNEEAERIDSLF 119
>gi|297183949|gb|ADI20070.1| hypothetical protein [uncultured alpha proteobacterium
EB080_L11F12]
Length = 135
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 61/107 (57%), Gaps = 5/107 (4%)
Query: 4 KNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP 63
K P S+R LRVGE +R A+ V+L + D + +++ EV + DL++A VY+ LP
Sbjct: 10 KGP--SQRQLRVGEMLRRAVSDVLLRGDIHDADLVHVSVTVGEVRSTPDLKLAIVYV-LP 66
Query: 64 L-DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQS 109
L + + VI ALN N IR + + L +L+Y P+L+F D +
Sbjct: 67 LGGENANIVIDALNRNKYEIRRSVNK-LVSLKYSPDLKFVLDRTFDQ 112
>gi|281425967|ref|ZP_06256880.1| ribosome-binding factor A [Prevotella oris F0302]
gi|299142405|ref|ZP_07035537.1| ribosome-binding factor A [Prevotella oris C735]
gi|281399860|gb|EFB30691.1| ribosome-binding factor A [Prevotella oris F0302]
gi|298576127|gb|EFI48001.1| ribosome-binding factor A [Prevotella oris C735]
Length = 111
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 33 QDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRN 92
Q R++ ++S++ V +S DL + T Y+S+ + ++ + N+K IR +GR + N
Sbjct: 24 QTRMMHGVMVSVTRVKISPDLSICTAYLSVFPSEKGEEIVRNVTANMKTIRYELGRRVHN 83
Query: 93 -LRYVPELRFRYDTSLQSYWKLNALM 117
LR +PELRF D SL +++ L+
Sbjct: 84 QLRIIPELRFFIDDSLDYIERIDELL 109
>gi|325971222|ref|YP_004247413.1| ribosome-binding factor A [Spirochaeta sp. Buddy]
gi|324026460|gb|ADY13219.1| Ribosome-binding factor A [Spirochaeta sp. Buddy]
Length = 120
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 58/105 (55%), Gaps = 3/105 (2%)
Query: 14 RVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-DVSPDRVI 72
R+ + A+ +I+ E ++ L+S + S+S V +SVD ATV+IS L D S +
Sbjct: 8 RIEARLSEAISTLIVKGEIKNPLLST-LCSVSRVELSVDNAFATVFISSVLDDDSLHASV 66
Query: 73 SALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
AL FI+ R+G L+ R P L F+ D SL+ K+NAL+
Sbjct: 67 DALQKASGFIQKRVGAFLKT-RNTPVLTFKADVSLKEGQKINALI 110
>gi|260771172|ref|ZP_05880099.1| ribosome-binding factor A [Vibrio furnissii CIP 102972]
gi|260613769|gb|EEX38961.1| ribosome-binding factor A [Vibrio furnissii CIP 102972]
gi|315179222|gb|ADT86136.1| ribosome-binding factor A [Vibrio furnissii NCTC 11218]
Length = 131
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 65/115 (56%), Gaps = 6/115 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL- 64
PK R RV ++++ L +IL E +D + +++IS+V +S DL A V+++
Sbjct: 2 PKEFSRTQRVAQQLQKEL-AMILQREVRDSRLG--MVTISDVEVSRDLAYAKVFVTFLCV 58
Query: 65 -DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ +P+ ++AL + IR +G+ +R LR PE+RF YD +L +++ L+
Sbjct: 59 GEQTPESCLNALREHEVHIRMMLGKRIR-LRLTPEIRFHYDNTLVEGMRMSNLVT 112
>gi|53715758|ref|YP_101750.1| ribosome-binding factor A [Bacteroides fragilis YCH46]
gi|60683689|ref|YP_213833.1| putative ribosome-binding factor A [Bacteroides fragilis NCTC 9343]
gi|253566429|ref|ZP_04843882.1| ribosome-binding factor A [Bacteroides sp. 3_2_5]
gi|265767300|ref|ZP_06094966.1| ribosome-binding factor A [Bacteroides sp. 2_1_16]
gi|52218623|dbj|BAD51216.1| ribosome-binding factor A [Bacteroides fragilis YCH46]
gi|60495123|emb|CAH09944.1| putative ribosome-binding factor A [Bacteroides fragilis NCTC 9343]
gi|251944601|gb|EES85076.1| ribosome-binding factor A [Bacteroides sp. 3_2_5]
gi|263252605|gb|EEZ24117.1| ribosome-binding factor A [Bacteroides sp. 2_1_16]
gi|301165202|emb|CBW24773.1| putative ribosome-binding factor A [Bacteroides fragilis 638R]
Length = 110
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Query: 41 VISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRN-LRYVPEL 99
++S+S V +S D+ +A VY+S+ + ++ +N N+K IR +G +R+ LR +PEL
Sbjct: 32 LVSVSAVRISPDMSIARVYLSIFPSEKSEEMVKNINNNMKSIRFELGTRVRHQLRIIPEL 91
Query: 100 RFRYDTSLQSYWKLNALM 117
+F D SL K++AL+
Sbjct: 92 KFFVDDSLDYIEKIDALL 109
>gi|315924371|ref|ZP_07920593.1| ribosome-binding factor A [Pseudoramibacter alactolyticus ATCC
23263]
gi|315622250|gb|EFV02209.1| ribosome-binding factor A [Pseudoramibacter alactolyticus ATCC
23263]
Length = 121
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 61/110 (55%), Gaps = 3/110 (2%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVS 67
S R ++ +++ L +I+ + +D+ + + +SI+ V + DL+VATVYIS L +
Sbjct: 3 SHRKEKIDAQIQREL-SLIIRQKTKDKRLHNNTLSITGVKATPDLKVATVYISVLGSEED 61
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
V+ AL F+R +G+ ++ +PEL F+ D S+ ++A++
Sbjct: 62 AQGVMEALKKAKGFLRSSLGKIMKT-HMIPELHFKRDESVAYGMHIDAIL 110
>gi|90409002|ref|ZP_01217132.1| ribosome-binding factor A [Psychromonas sp. CNPT3]
gi|90309887|gb|EAS38042.1| ribosome-binding factor A [Psychromonas sp. CNPT3]
Length = 134
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 62/115 (53%), Gaps = 6/115 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL- 64
K R RV ++V+ L IL E +D I ++++S V ++ DL A V+++
Sbjct: 2 AKEYSRTSRVSQQVQKELAR-ILQQEVKDPRIG--MVTVSGVDITRDLAYAKVFVTFLTI 58
Query: 65 -DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
D + D + LN +IR +G+++R LR VPE+RF +D +L +L+ L+
Sbjct: 59 GDQTNDESLEGLNSAAGYIRRLLGKAMR-LRIVPEVRFCFDETLTEGLRLSELVS 112
>gi|291287259|ref|YP_003504075.1| ribosome-binding factor A [Denitrovibrio acetiphilus DSM 12809]
gi|290884419|gb|ADD68119.1| ribosome-binding factor A [Denitrovibrio acetiphilus DSM 12809]
Length = 110
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 61/107 (57%), Gaps = 4/107 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
R RVGE +RS +M VI+ E D I +DV+ ++++ ++ DL +A VY S + +
Sbjct: 2 RDRRVGELLRSEIMDVIIK-EVNDPKI-KDVV-LTKIDVTKDLSIAKVYFSTYNKSAKEG 58
Query: 71 VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ LN + FIR I + LR L+ VP LRF YD S K++ L+
Sbjct: 59 IERGLNRSAGFIRHCILKGLR-LKKVPTLRFIYDDSGDYGQKIDGLL 104
>gi|327312746|ref|YP_004328183.1| ribosome-binding factor A [Prevotella denticola F0289]
gi|326944148|gb|AEA20033.1| ribosome-binding factor A [Prevotella denticola F0289]
Length = 111
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 33 QDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRN 92
Q R++ ++S++ V +S DL + T Y+S+ D ++ +N N K IR +G+ + N
Sbjct: 24 QTRMMHGVLVSVTRVKVSPDLSICTAYLSIFPSEKGDELLKNINANEKTIRYDLGQRVHN 83
Query: 93 -LRYVPELRFRYDTSLQSYWKLNALM 117
LR +PELRF D SL +++ L+
Sbjct: 84 QLRIIPELRFFIDDSLDYIERIDELL 109
>gi|240949212|ref|ZP_04753556.1| ribosome-binding factor A [Actinobacillus minor NM305]
gi|240296328|gb|EER46972.1| ribosome-binding factor A [Actinobacillus minor NM305]
Length = 126
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 64/112 (57%), Gaps = 7/112 (6%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPD 69
+R+ RV +E++ + +IL E +D I ++++S+V +S DL A ++++ D +
Sbjct: 6 KRSDRVAQELQKEV-AIILQREVKDPRIG--MVTVSDVEVSRDLAYAKIFVTFLFDNDQE 62
Query: 70 RV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ + L +IR +G+++R LR VPELRF YD SL +++ L+
Sbjct: 63 AIKQGMKGLEKASPYIRSLVGKAMR-LRIVPELRFIYDESLVEGMRMSNLVS 113
>gi|223042080|ref|ZP_03612256.1| ribosome-binding factor A [Actinobacillus minor 202]
gi|223017155|gb|EEF15591.1| ribosome-binding factor A [Actinobacillus minor 202]
Length = 126
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 64/112 (57%), Gaps = 7/112 (6%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPD 69
+R+ RV +E++ + +IL E +D I ++++S+V +S DL A ++++ D +
Sbjct: 6 KRSDRVAQELQKEV-AIILQREVKDPRIG--MVTVSDVEVSRDLAYAKIFVTFLFDNDQE 62
Query: 70 RV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ + L +IR +G+++R LR VPELRF YD SL +++ L+
Sbjct: 63 AIKQGMKGLEKASPYIRSLVGKAMR-LRIVPELRFIYDESLVEGMRMSNLVS 113
>gi|255011427|ref|ZP_05283553.1| putative ribosome-binding factor A [Bacteroides fragilis 3_1_12]
gi|313149243|ref|ZP_07811436.1| ribosome-binding factor A [Bacteroides fragilis 3_1_12]
gi|313138010|gb|EFR55370.1| ribosome-binding factor A [Bacteroides fragilis 3_1_12]
Length = 110
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 51/79 (64%), Gaps = 3/79 (3%)
Query: 41 VISISEVCMSVDLRVATVYIS-LPLDVSPDRVISALNCNIKFIRGRIGRSLRN-LRYVPE 98
++S+S V +S D+ +A VY+S P D S + ++ +N N+K IR +G +R+ LR +PE
Sbjct: 32 LVSVSAVRISPDMSIARVYLSVFPSDKS-EEMVKNINNNMKSIRFELGTRVRHQLRIIPE 90
Query: 99 LRFRYDTSLQSYWKLNALM 117
L+F D SL K++AL+
Sbjct: 91 LKFFVDDSLDYIEKIDALL 109
>gi|262163942|ref|ZP_06031681.1| ribosome-binding factor A [Vibrio mimicus VM223]
gi|262027470|gb|EEY46136.1| ribosome-binding factor A [Vibrio mimicus VM223]
Length = 132
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 65/114 (57%), Gaps = 6/114 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL- 64
PK R RV ++++ L +IL E +D + +++IS+V +S DL A V+++
Sbjct: 2 PKEFSRTQRVAQQLQKEL-AMILQREVRDSRLG--MVTISDVEVSRDLAYAKVFVTFLCI 58
Query: 65 -DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ +P+ ++AL + IR +G+ +R LR PE+RF YD +L +++ L+
Sbjct: 59 GEQTPESCLAALREHEVHIRMMLGKQIR-LRLTPEIRFYYDNTLVEGMRMSNLV 111
>gi|113460965|ref|YP_719032.1| ribosome-binding factor A [Haemophilus somnus 129PT]
gi|170717522|ref|YP_001784613.1| ribosome-binding factor A [Haemophilus somnus 2336]
gi|123327302|sp|Q0I3P4|RBFA_HAES1 RecName: Full=Ribosome-binding factor A
gi|189039544|sp|B0UU14|RBFA_HAES2 RecName: Full=Ribosome-binding factor A
gi|112823008|gb|ABI25097.1| ribosome-binding factor A [Haemophilus somnus 129PT]
gi|168825651|gb|ACA31022.1| ribosome-binding factor A [Haemophilus somnus 2336]
Length = 126
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 63/112 (56%), Gaps = 7/112 (6%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP- 68
+R+ RV +E++ + VIL E +D I ++++S+V +S DL A ++++ D
Sbjct: 6 KRSDRVAQEIQKEV-AVILQREVKDPRIG--MVTVSDVEISSDLAYAKIFVTFLFDQDEN 62
Query: 69 --DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
++ + L +IR +G+ +R LR VPELRF YD SL +++ L+
Sbjct: 63 VIEQGMKGLEKASPYIRSLLGKVMR-LRIVPELRFIYDQSLVDGMRMSNLVT 113
>gi|258620314|ref|ZP_05715352.1| ribosome-binding factor A [Vibrio mimicus VM573]
gi|262172280|ref|ZP_06039958.1| ribosome-binding factor A [Vibrio mimicus MB-451]
gi|258587193|gb|EEW11904.1| ribosome-binding factor A [Vibrio mimicus VM573]
gi|261893356|gb|EEY39342.1| ribosome-binding factor A [Vibrio mimicus MB-451]
Length = 132
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 65/114 (57%), Gaps = 6/114 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL- 64
PK R RV ++++ L +IL E +D + +++IS+V +S DL A V+++
Sbjct: 2 PKEFSRTQRVAQQLQKEL-AMILQREVRDSRLG--MVTISDVEVSRDLAYAKVFVTFLCV 58
Query: 65 -DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ +P+ ++AL + IR +G+ +R LR PE+RF YD +L +++ L+
Sbjct: 59 GEQTPESCLAALREHEVHIRMMLGKQIR-LRLTPEIRFYYDNTLVEGMRMSNLV 111
>gi|16800432|ref|NP_470700.1| ribosome-binding factor A [Listeria innocua Clip11262]
gi|20978611|sp|Q92C27|RBFA_LISIN RecName: Full=Ribosome-binding factor A
gi|16413837|emb|CAC96595.1| rbfA [Listeria innocua Clip11262]
Length = 114
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 60/108 (55%), Gaps = 5/108 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
RA RV E+++ L ILN + +D + ++++ V ++ DL+ A V+IS L D +
Sbjct: 4 RANRVSEQMKKEL-GDILNRKIKDPRLG--FVTVTGVDVTGDLQEAKVFISILGTDKEKE 60
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ AL FIR IGR +R LR VPE+ F D S+ +++ L+
Sbjct: 61 NTLLALEKAHGFIRSEIGRRIR-LRKVPEMSFEIDNSIAYGNRIDELL 107
>gi|152972091|ref|YP_001337237.1| ribosome-binding factor A [Klebsiella pneumoniae subsp. pneumoniae
MGH 78578]
gi|206575945|ref|YP_002236422.1| ribosome-binding factor A [Klebsiella pneumoniae 342]
gi|238896674|ref|YP_002921419.1| ribosome-binding factor A [Klebsiella pneumoniae NTUH-K2044]
gi|262042725|ref|ZP_06015879.1| ribosome-binding factor A [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|288933405|ref|YP_003437464.1| ribosome-binding factor A [Klebsiella variicola At-22]
gi|290511544|ref|ZP_06550913.1| ribosome-binding factor A [Klebsiella sp. 1_1_55]
gi|329997776|ref|ZP_08302915.1| ribosome-binding factor A [Klebsiella sp. MS 92-3]
gi|166218444|sp|A6TEI6|RBFA_KLEP7 RecName: Full=Ribosome-binding factor A
gi|226723604|sp|B5XSX5|RBFA_KLEP3 RecName: Full=Ribosome-binding factor A
gi|150956940|gb|ABR78970.1| ribosome-binding factor A [Klebsiella pneumoniae subsp. pneumoniae
MGH 78578]
gi|206565003|gb|ACI06779.1| ribosome-binding factor A [Klebsiella pneumoniae 342]
gi|238549001|dbj|BAH65352.1| ribosome-binding factor A [Klebsiella pneumoniae subsp. pneumoniae
NTUH-K2044]
gi|259039950|gb|EEW41067.1| ribosome-binding factor A [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|288888134|gb|ADC56452.1| ribosome-binding factor A [Klebsiella variicola At-22]
gi|289776537|gb|EFD84536.1| ribosome-binding factor A [Klebsiella sp. 1_1_55]
gi|328538910|gb|EGF64971.1| ribosome-binding factor A [Klebsiella sp. MS 92-3]
Length = 133
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 60/115 (52%), Gaps = 6/115 (5%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
K R RV +E++ + +IL E +D + + ++S V MS DL A VY++ D
Sbjct: 3 KEFGRPQRVAQEMQKEI-AIILQREIKDPRLGM-MTTVSGVEMSRDLAYAKVYVTFLNDK 60
Query: 67 SPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
V I AL FIR +G+++R LR VPEL F YD SL +++ L+
Sbjct: 61 DEAAVKAGIKALQEASGFIRSLLGKAMR-LRIVPELTFFYDNSLVEGMRMSNLVT 114
>gi|302392346|ref|YP_003828166.1| ribosome-binding factor A [Acetohalobium arabaticum DSM 5501]
gi|302204423|gb|ADL13101.1| ribosome-binding factor A [Acetohalobium arabaticum DSM 5501]
Length = 122
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 57/99 (57%), Gaps = 5/99 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
R RV E ++ + +L E +D I ++I++V +S DLR A V++S L + + +
Sbjct: 5 RPRRVAELIKKEVSQ-MLQQEIKDPRIG--FVTITDVEVSEDLRHAKVFVSVLDAEETKE 61
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
+ L + +IR +G+ +R LR+ PE+ FRYD S++
Sbjct: 62 ETMEGLENAVGYIRRELGQRIR-LRHTPEILFRYDDSIK 99
>gi|325479406|gb|EGC82502.1| ribosome-binding factor A [Anaerococcus prevotii ACS-065-V-Col13]
Length = 128
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 62/111 (55%), Gaps = 2/111 (1%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV- 66
N RR R+ EV+ L ++ ++ RL ++SI++V ++ DL A Y+S+ D
Sbjct: 2 NKRRTERISSEVKKELSKILRDDLNDPRLSMEAMVSITDVEVTNDLSYADCYVSVLGDSH 61
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ + V+ AL+ +I+ IG +R LR +PE RF+ D S++ ++ L+
Sbjct: 62 NKEDVLEALDQAKGYIKILIGERMR-LRSMPEFRFKLDESIERGAYMDKLI 111
>gi|150024347|ref|YP_001295173.1| ribosome-binding factor A [Flavobacterium psychrophilum JIP02/86]
gi|172048600|sp|A6GW80|RBFA_FLAPJ RecName: Full=Ribosome-binding factor A
gi|149770888|emb|CAL42353.1| Ribosome-binding factor A [Flavobacterium psychrophilum JIP02/86]
Length = 130
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 66/118 (55%), Gaps = 4/118 (3%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDVS 67
+ R ++G ++ L+ IL E + IS VIS+S+V ++ DL VA VY+S+ P + +
Sbjct: 3 TNRQKKIGGVIQKDLVD-ILQGEIRKNGISNLVISVSKVSVTTDLGVARVYLSVFPQEKA 61
Query: 68 PDRVISALNCNIKFIRGRIGRSLR-NLRYVPELRFRYDTSLQSYWKLNALMCLPKIPV 124
P+ ++ ++ N+ I+ + + +R LR VP L F D SL K++ + + P+
Sbjct: 62 PE-ILESIKSNMYLIKHDLSQRVRLQLRKVPNLAFYIDDSLDYIEKIDNALAGKENPI 118
>gi|282881986|ref|ZP_06290627.1| ribosome-binding factor A [Peptoniphilus lacrimalis 315-B]
gi|300813721|ref|ZP_07094041.1| ribosome-binding factor A [Peptoniphilus sp. oral taxon 836 str.
F0141]
gi|281298016|gb|EFA90471.1| ribosome-binding factor A [Peptoniphilus lacrimalis 315-B]
gi|300512178|gb|EFK39358.1| ribosome-binding factor A [Peptoniphilus sp. oral taxon 836 str.
F0141]
Length = 118
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 62/111 (55%), Gaps = 4/111 (3%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDV 66
+++R ++ EEV+ LM ++ N+ +D I + SIS V ++ DL A VY+S+ D+
Sbjct: 2 DNKRINKISEEVKRCLMDIV-QNKIKDPRIPT-LTSISHVEVTRDLSFAKVYVSIFADDI 59
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ + L FI+ + R ++ LR +PEL F D S++ K++ L+
Sbjct: 60 KKQKALQGLESAKGFIKKELAREVK-LRVMPELIFINDDSIEKGLKMDKLI 109
>gi|307564965|ref|ZP_07627482.1| ribosome-binding factor A [Prevotella amnii CRIS 21A-A]
gi|307346278|gb|EFN91598.1| ribosome-binding factor A [Prevotella amnii CRIS 21A-A]
Length = 113
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 33 QDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRN 92
Q RL+ ++S++ V +S DL + T Y+S+ + +I +N N K IR +G+ N
Sbjct: 24 QTRLLHGVLVSVTRVRISPDLSICTAYLSIFPSEKTEELIKNINTNEKTIRYELGKRTHN 83
Query: 93 -LRYVPELRFRYDTSLQSYWKLNALM 117
LR +PELRF D SL + L+
Sbjct: 84 QLRIIPELRFFVDDSLDYLEHIEHLL 109
>gi|157825722|ref|YP_001493442.1| ribosome-binding factor A [Rickettsia akari str. Hartford]
gi|166219399|sp|A8GNF9|RBFA_RICAH RecName: Full=Ribosome-binding factor A
gi|157799680|gb|ABV74934.1| ribosome-binding factor A [Rickettsia akari str. Hartford]
Length = 129
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 64/119 (53%), Gaps = 4/119 (3%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
MK NS R ++ + AL+ ++ + D + ++I++V ++ DL++A Y
Sbjct: 1 MKKLTKTNSHRQQKLASIINEALIEILRRGKMLDSRLFNCPLTITKVIVTADLKIANCYF 60
Query: 61 SLPLD--VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
LP + ++ + V++ALN + K IR I + N+++ P++RF YD + K+ L+
Sbjct: 61 -LPFNTKLTINEVMNALNNSKKAIRNFITNKI-NVKFSPDIRFHYDHGFDNAIKVEELL 117
>gi|87119790|ref|ZP_01075687.1| Ribosome-binding factor A [Marinomonas sp. MED121]
gi|86165266|gb|EAQ66534.1| Ribosome-binding factor A [Marinomonas sp. MED121]
Length = 130
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 66/111 (59%), Gaps = 8/111 (7%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
R R+G++++ L +I +F+ + +++I+EV ++ DL A VY + L +D P+
Sbjct: 7 RTSRIGDQLQKELASII---QFEVKDPRLGIVTINEVRVAKDLGYADVYYTVLGMDDKPE 63
Query: 70 RVI---SALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
++ +AL+ F+R R + ++ LR +P LRF YD S+ + K++AL+
Sbjct: 64 KLAENQTALDSASNFLRRRASQEIK-LRVMPLLRFHYDDSVVNGAKMSALI 113
>gi|304320571|ref|YP_003854214.1| ribosome-binding factor A [Parvularcula bermudensis HTCC2503]
gi|303299473|gb|ADM09072.1| ribosome-binding factor A [Parvularcula bermudensis HTCC2503]
Length = 106
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 53/100 (53%), Gaps = 3/100 (3%)
Query: 19 VRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPDRVISALNC 77
+R AL + E + ++I+EV +S DL+ ATV+ S L DV D ++ LN
Sbjct: 2 IRHALAEMFQREEIHEEAFPTTPVTITEVRVSPDLKSATVFCSALGKDVF-DEEVAQLNA 60
Query: 78 NIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
IR +GR + ++Y P L+F D + + ++NAL+
Sbjct: 61 ISGAIRQVLGRKI-TMKYTPSLKFLPDETFEEAARINALL 99
>gi|261407935|ref|YP_003244176.1| ribosome-binding factor A [Paenibacillus sp. Y412MC10]
gi|329929300|ref|ZP_08283053.1| ribosome-binding factor A [Paenibacillus sp. HGF5]
gi|261284398|gb|ACX66369.1| ribosome-binding factor A [Paenibacillus sp. Y412MC10]
gi|328936669|gb|EGG33112.1| ribosome-binding factor A [Paenibacillus sp. HGF5]
Length = 117
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 57/109 (52%), Gaps = 5/109 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
R RVGE+++ L +I E +D I I+++ V ++ DL A VY+S L D
Sbjct: 5 RTGRVGEQIKKELSQLI-QTELKDPRIG--FITVTGVDVTNDLSQAKVYLSVLGDDEQKA 61
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ L F+R +G+ +R LR+VPEL F++D S+ + L+
Sbjct: 62 ASLKGLEKASGFLRSELGKRIR-LRHVPELIFKFDDSIAYGSHIEKLLT 109
>gi|83644102|ref|YP_432537.1| ribosome-binding factor A [Hahella chejuensis KCTC 2396]
gi|123534477|sp|Q2SML2|RBFA_HAHCH RecName: Full=Ribosome-binding factor A
gi|83632145|gb|ABC28112.1| ribosome-binding factor A [Hahella chejuensis KCTC 2396]
Length = 135
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 62/111 (55%), Gaps = 11/111 (9%)
Query: 14 RVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPL-DVSPDRV 71
RV E+++ L +I E +D + +++++ V +S DL A VY++ L L DV D
Sbjct: 10 RVAEQIQKELAQLI-QRELKDPRLG--MVTVNSVKVSKDLSYADVYVTVLNLKDVEDDGD 66
Query: 72 IS-----ALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
S L F+R +GR+++ LR +P+LRF YD S+ + +L AL+
Sbjct: 67 ASKASLKVLESAAGFLRSELGRAIK-LRVMPQLRFHYDASVSNAQRLGALI 116
>gi|161551797|ref|YP_147118.2| ribosome-binding factor A [Geobacillus kaustophilus HTA426]
gi|61214671|sp|Q5L0I6|RBFA_GEOKA RecName: Full=Ribosome-binding factor A
Length = 127
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 60/108 (55%), Gaps = 5/108 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
RA RVGE+++ L +I + +D I +++++V ++ DL+ A VYIS L D +
Sbjct: 4 RATRVGEQMKKELSDII-SRRLKDPRIG--FVTVTDVRVTGDLQQAKVYISVLGDDKQRE 60
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ AL FIR IG+ +R LR PE+ F D +++ ++ L+
Sbjct: 61 NTLKALEKAKGFIRSEIGQRIR-LRKTPEIFFEIDETMEYGSRIEQLI 107
>gi|256830183|ref|YP_003158911.1| ribosome-binding factor A [Desulfomicrobium baculatum DSM 4028]
gi|256579359|gb|ACU90495.1| ribosome-binding factor A [Desulfomicrobium baculatum DSM 4028]
Length = 114
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 61/102 (59%), Gaps = 5/102 (4%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATV-YISLPLDV 66
NSRRA+++G+++ L +++ E +D ++ +++I+ V ++ D +A V Y L
Sbjct: 5 NSRRAIQMGDQIMQVLASLLIQ-EVEDPTLA--LVTITGVRLNRDFSIAEVLYTHLRGRA 61
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
+ + AL F+R R+ + L NLR +P+LRF++DT L+
Sbjct: 62 AEPEITKALYHAKGFLRSRLSKEL-NLRGIPDLRFQWDTFLE 102
>gi|310828064|ref|YP_003960421.1| hypothetical protein ELI_2476 [Eubacterium limosum KIST612]
gi|308739798|gb|ADO37458.1| hypothetical protein ELI_2476 [Eubacterium limosum KIST612]
Length = 130
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 54/96 (56%), Gaps = 2/96 (2%)
Query: 24 MWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDVSPDRVISALNCNIKFI 82
+ +I+ + +D +RD +SI+ V + DL+ ATVY+S+ + V+ L+ F+
Sbjct: 17 LSLIIQQKMKDSRFNRDTLSITHVKAAPDLKTATVYVSIFGTSEEKEEVLGLLDNAKGFL 76
Query: 83 RGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
R +G+ L+ + +P L F+ D S++ +++++
Sbjct: 77 RANLGKVLK-VHSIPALTFKLDDSVEYGMHIDSILA 111
>gi|309791822|ref|ZP_07686309.1| ribosome-binding factor A [Oscillochloris trichoides DG6]
gi|308226144|gb|EFO79885.1| ribosome-binding factor A [Oscillochloris trichoides DG6]
Length = 143
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 56/103 (54%), Gaps = 4/103 (3%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
P + +R ++G+ ++ L VI +E +D + +++ V +S DL+ ATV IS+ D
Sbjct: 17 PMSKQRLQQIGDRIQQVLGAVI-QSEIKDPRVG--FATVTGVEVSADLQHATVRISIMGD 73
Query: 66 VSPDR-VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSL 107
++ L F+R R+ LR++R+VPEL DTSL
Sbjct: 74 AEEQAATMAGLQRARSFLRRRVADELRHMRFVPELHLVQDTSL 116
>gi|167037620|ref|YP_001665198.1| ribosome-binding factor A [Thermoanaerobacter pseudethanolicus ATCC
33223]
gi|289578385|ref|YP_003477012.1| ribosome-binding factor A [Thermoanaerobacter italicus Ab9]
gi|297544661|ref|YP_003676963.1| ribosome-binding factor A [Thermoanaerobacter mathranii subsp.
mathranii str. A3]
gi|320116035|ref|YP_004186194.1| ribosome-binding factor A [Thermoanaerobacter brockii subsp. finnii
Ako-1]
gi|166856454|gb|ABY94862.1| ribosome-binding factor A [Thermoanaerobacter pseudethanolicus ATCC
33223]
gi|289528098|gb|ADD02450.1| ribosome-binding factor A [Thermoanaerobacter italicus Ab9]
gi|296842436|gb|ADH60952.1| ribosome-binding factor A [Thermoanaerobacter mathranii subsp.
mathranii str. A3]
gi|319929126|gb|ADV79811.1| ribosome-binding factor A [Thermoanaerobacter brockii subsp. finnii
Ako-1]
Length = 119
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 55/96 (57%), Gaps = 4/96 (4%)
Query: 14 RVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR-VI 72
R+ EE++ + +IL E +D I + ++SI+++ ++ DLR A VY+S+ + R
Sbjct: 7 RLSEEIKKEISKMILE-EIKDPRI-KAMVSITDIELTKDLRYAKVYVSIYGNEEDKRETF 64
Query: 73 SALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
L +IR IGR ++ +RY PE+ F D S++
Sbjct: 65 EGLKSAAGYIRHEIGRRIK-MRYTPEIIFELDHSIE 99
>gi|306820440|ref|ZP_07454076.1| ribosome-binding factor A [Eubacterium yurii subsp. margaretiae
ATCC 43715]
gi|304551515|gb|EFM39470.1| ribosome-binding factor A [Eubacterium yurii subsp. margaretiae
ATCC 43715]
Length = 131
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 62/115 (53%), Gaps = 9/115 (7%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLI--SRDVISISEVCMSVDLRVATVYISLPLDVS 67
R R+GEE++ + +++ ++ ++ + +IS+ V + DL+ A VYIS+ L
Sbjct: 4 ERTQRIGEEIKKTITKMLIEGHIKNTVLLNTHSLISVVSVDVVRDLKYAYVYISV-LGQG 62
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
+ +I++L + FIR +GR LRY PEL F D S++ N + + KI
Sbjct: 63 QEEIIASLQKSAGFIRKEVGR-FTKLRYTPELIFLEDNSIK-----NGVEMISKI 111
>gi|253581493|ref|ZP_04858718.1| ribosome-binding factor A [Fusobacterium varium ATCC 27725]
gi|251836563|gb|EES65098.1| ribosome-binding factor A [Fusobacterium varium ATCC 27725]
Length = 115
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 49/81 (60%), Gaps = 3/81 (3%)
Query: 39 RDVISISEVCMSVDLRVATVYISL--PLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYV 96
+ ++S++ V ++ DL+ A V+ S+ +++ D V+ LN F+R R+ + +RY+
Sbjct: 31 KGIVSVTSVHVTEDLKFADVFFSIMGQENINTDEVLEGLNQIKGFLRKRVAEEI-EIRYI 89
Query: 97 PELRFRYDTSLQSYWKLNALM 117
PE+R + D S++ K++ L+
Sbjct: 90 PEIRVKIDDSIEHAVKISKLL 110
>gi|224537525|ref|ZP_03678064.1| hypothetical protein BACCELL_02404 [Bacteroides cellulosilyticus
DSM 14838]
gi|224520838|gb|EEF89943.1| hypothetical protein BACCELL_02404 [Bacteroides cellulosilyticus
DSM 14838]
Length = 110
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 41 VISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRN-LRYVPEL 99
+IS+S V +S DL VA Y+S+ + +I +N N+K IR +G +R+ LR +PEL
Sbjct: 32 LISVSAVRISPDLSVARAYLSIFPSEKAEEIIKNVNDNMKSIRYELGTRVRHQLRIIPEL 91
Query: 100 RFRYDTSLQSYWKLNALM 117
+F D SL K++ L+
Sbjct: 92 KFFVDDSLDYLEKIDELL 109
>gi|218131518|ref|ZP_03460322.1| hypothetical protein BACEGG_03137 [Bacteroides eggerthii DSM 20697]
gi|317476473|ref|ZP_07935722.1| ribosome-binding factor A [Bacteroides eggerthii 1_2_48FAA]
gi|217986450|gb|EEC52787.1| hypothetical protein BACEGG_03137 [Bacteroides eggerthii DSM 20697]
gi|316907499|gb|EFV29204.1| ribosome-binding factor A [Bacteroides eggerthii 1_2_48FAA]
Length = 110
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 51/87 (58%), Gaps = 1/87 (1%)
Query: 32 FQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLR 91
Q + +S +IS+S V +S D+ VA Y+S+ + +I +N N+K IR +G +R
Sbjct: 23 LQTKSMSGILISVSAVRISPDMSVARAYLSVFPSEKSEEIIKNINANMKSIRFELGTRVR 82
Query: 92 N-LRYVPELRFRYDTSLQSYWKLNALM 117
+ LR +PEL+F D SL +++ L+
Sbjct: 83 HQLRIIPELKFFVDDSLDYLERIDELL 109
>gi|300721539|ref|YP_003710814.1| ribosome-binding factor, role in processing of 10S rRNA
[Xenorhabdus nematophila ATCC 19061]
gi|297628031|emb|CBJ88580.1| ribosome-binding factor, role in processing of 10S rRNA
[Xenorhabdus nematophila ATCC 19061]
Length = 136
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 65/116 (56%), Gaps = 13/116 (11%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV---- 66
R RV +E++ + +IL E +D I + ++S V +S DL A V+++ L+V
Sbjct: 7 RTQRVAQEMQKEI-AIILQREIKDPRIG--MATVSGVEVSRDLAYAKVFVTF-LNVLVEG 62
Query: 67 -SPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
D+V I ALN FIR +G+++R LR VPEL F YD+SL +++ L+
Sbjct: 63 HDSDQVKEGIKALNDASGFIRSLLGKAMR-LRIVPELTFSYDSSLVEGMRMSNLVS 117
>gi|297744711|emb|CBI37973.3| unnamed protein product [Vitis vinifera]
Length = 146
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 51/85 (60%), Gaps = 3/85 (3%)
Query: 34 DRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRV-ISALNCNIKFIRGRIGRSLRN 92
DR +S + +IS+V +S DL+V VY+S+ D V I+ L K++R +GR ++
Sbjct: 21 DRYLS-SLTTISDVEVSADLQVVKVYVSVFGDEKGKEVAIAGLKSKAKYVRSELGRRMK- 78
Query: 93 LRYVPELRFRYDTSLQSYWKLNALM 117
LR PE+RF D SL+ ++ A++
Sbjct: 79 LRLTPEIRFVEDESLERGSRVIAIL 103
>gi|115372769|ref|ZP_01460075.1| ribosome-binding factor A [Stigmatella aurantiaca DW4/3-1]
gi|310823418|ref|YP_003955776.1| ribosome-binding factor a [Stigmatella aurantiaca DW4/3-1]
gi|3914548|sp|O05340|RBFA_STIAU RecName: Full=Ribosome-binding factor A
gi|1934985|emb|CAA61164.1| ribosome binding factor A [Stigmatella aurantiaca]
gi|115370250|gb|EAU69179.1| ribosome-binding factor A [Stigmatella aurantiaca DW4/3-1]
gi|309396490|gb|ADO73949.1| Ribosome-binding factor A [Stigmatella aurantiaca DW4/3-1]
Length = 119
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 62/109 (56%), Gaps = 6/109 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
R RVG+E+++A+ ++ E +D I I+I+ V +S DLRVA V+ S+ + + +R
Sbjct: 6 RPERVGQEIQAAIGQLLTRGELRDPRIG--FITITGVKVSPDLRVAQVFYSM-MGTAQER 62
Query: 71 VIS--ALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ L+ F+R + ++ NLR PE+ F +D S+ K++ L+
Sbjct: 63 AETQKGLDAAKGFVRREVTAAV-NLRVSPEVFFTFDESVGEGDKIDRLL 110
>gi|258511416|ref|YP_003184850.1| ribosome-binding factor A [Alicyclobacillus acidocaldarius subsp.
acidocaldarius DSM 446]
gi|257478142|gb|ACV58461.1| ribosome-binding factor A [Alicyclobacillus acidocaldarius subsp.
acidocaldarius DSM 446]
Length = 118
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 53/97 (54%), Gaps = 5/97 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDVSPD 69
RA +V E+++ L IL +E +D I ++I+ V +S DL+ A +Y+S+ + +
Sbjct: 5 RAQKVAEQMKKELAD-ILQHELKDPRIG--FVTITRVEVSGDLQHAKIYVSVYGPEAEKE 61
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTS 106
+ L FIRG I R L ++R PEL FR D S
Sbjct: 62 ATLGVLTKAAGFIRGEIARRL-HMRMAPELVFRLDES 97
>gi|261419465|ref|YP_003253147.1| ribosome-binding factor A [Geobacillus sp. Y412MC61]
gi|297530560|ref|YP_003671835.1| ribosome-binding factor A [Geobacillus sp. C56-T3]
gi|319766280|ref|YP_004131781.1| ribosome-binding factor A [Geobacillus sp. Y412MC52]
gi|261375922|gb|ACX78665.1| ribosome-binding factor A [Geobacillus sp. Y412MC61]
gi|297253812|gb|ADI27258.1| ribosome-binding factor A [Geobacillus sp. C56-T3]
gi|317111146|gb|ADU93638.1| ribosome-binding factor A [Geobacillus sp. Y412MC52]
Length = 127
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 60/108 (55%), Gaps = 5/108 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
RA RVGE+++ L +I + +D I +++++V ++ DL+ A VYIS L D +
Sbjct: 4 RATRVGEQMKKELSDII-SRRLKDPRIG--FVTVTDVRVTGDLQQAKVYISVLGDDKQRE 60
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ AL FIR IG+ +R LR PE+ F D +++ ++ L+
Sbjct: 61 NTLKALEKAKGFIRSEIGQRIR-LRKTPEIFFEIDETIEYGSRIEQLI 107
>gi|167630360|ref|YP_001680859.1| ribosome-binding factor a [Heliobacterium modesticaldum Ice1]
gi|238687990|sp|B0THR5|RBFA_HELMI RecName: Full=Ribosome-binding factor A
gi|167593100|gb|ABZ84848.1| ribosome-binding factor a [Heliobacterium modesticaldum Ice1]
Length = 121
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 60/111 (54%), Gaps = 5/111 (4%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
R R+ EE++ L +L +E +D + +SI+ V +S D R A VY+S+ D S
Sbjct: 3 GHRMARMAEEIKRELAR-LLRDEMKDPRLG--FVSITAVEVSGDGRHAKVYVSVMGDESA 59
Query: 69 -DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
D +AL F+R + +SLR +RYVPEL F D S++ ++ L+
Sbjct: 60 RDNSQAALKQATGFLRTELSKSLR-VRYVPELVFLSDLSIERGTRIARLLT 109
>gi|325860163|ref|ZP_08173288.1| ribosome-binding factor A [Prevotella denticola CRIS 18C-A]
gi|327312736|ref|YP_004328173.1| ribosome-binding factor A [Prevotella denticola F0289]
gi|325482250|gb|EGC85258.1| ribosome-binding factor A [Prevotella denticola CRIS 18C-A]
gi|326944166|gb|AEA20051.1| ribosome-binding factor A [Prevotella denticola F0289]
Length = 111
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 33 QDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRN 92
Q R++ ++S++ V +S DL V T Y+S+ + ++ +N N K IR +G+ + N
Sbjct: 24 QTRMMHGVLVSVTRVKISPDLSVCTAYLSIFPSEKGEELLKNINANEKTIRYELGQRVHN 83
Query: 93 -LRYVPELRFRYDTSLQSYWKLNALM 117
LR +PELRF D SL +++ L+
Sbjct: 84 QLRIIPELRFFIDDSLDYLDRIDELL 109
>gi|34762751|ref|ZP_00143740.1| Ribosome-binding factor A [Fusobacterium nucleatum subsp. vincentii
ATCC 49256]
gi|237742961|ref|ZP_04573442.1| ribosome-binding factor A [Fusobacterium sp. 4_1_13]
gi|256846933|ref|ZP_05552387.1| ribosome-binding factor A [Fusobacterium sp. 3_1_36A2]
gi|294784274|ref|ZP_06749569.1| ribosome-binding factor A [Fusobacterium sp. 3_1_27]
gi|27887601|gb|EAA24681.1| Ribosome-binding factor A [Fusobacterium nucleatum subsp. vincentii
ATCC 49256]
gi|229430609|gb|EEO40821.1| ribosome-binding factor A [Fusobacterium sp. 4_1_13]
gi|256717731|gb|EEU31290.1| ribosome-binding factor A [Fusobacterium sp. 3_1_36A2]
gi|294488140|gb|EFG35491.1| ribosome-binding factor A [Fusobacterium sp. 3_1_27]
Length = 120
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 63/115 (54%), Gaps = 10/115 (8%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL--PLD-- 65
+R +G+E+ + VIL ++ + ++S++EV ++ DL+ A Y S+ PL+
Sbjct: 4 QRLEGIGKEIMRVISKVILEEVKNPKI--KGLVSVTEVDVTEDLKFADTYFSILPPLNSD 61
Query: 66 ---VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ ++ ALN F+R R+ + ++RY PE+R + D S+++ K+ L+
Sbjct: 62 EKQYDSEEILEALNEIKGFLRKRVAEEV-DIRYTPEIRVKLDNSMENAMKITKLL 115
>gi|313892629|ref|ZP_07826216.1| ribosome-binding factor A [Dialister microaerophilus UPII 345-E]
gi|329121251|ref|ZP_08249878.1| ribosome-binding factor A [Dialister micraerophilus DSM 19965]
gi|313119026|gb|EFR42231.1| ribosome-binding factor A [Dialister microaerophilus UPII 345-E]
gi|327470185|gb|EGF15648.1| ribosome-binding factor A [Dialister micraerophilus DSM 19965]
Length = 117
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 58/108 (53%), Gaps = 5/108 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDVSPD 69
R ++ E ++ + ++LN RL ++++V ++ DLR ATVY+SL +
Sbjct: 5 RVRKIQEFIKQEVGKLLLNGIKDPRL---GFTTVTDVKVTGDLREATVYVSLFGSEKEKK 61
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
++ LN FIR +G+SL N+ Y PE+ F D SL+ K+ L+
Sbjct: 62 DSLNVLNKAKGFIRKEVGKSL-NIFYSPEISFEEDKSLEYGMKIEKLL 108
>gi|327404009|ref|YP_004344847.1| ribosome-binding factor A [Fluviicola taffensis DSM 16823]
gi|327319517|gb|AEA44009.1| ribosome-binding factor A [Fluviicola taffensis DSM 16823]
Length = 111
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 44/77 (57%)
Query: 41 VISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELR 100
++S++ V ++ DL +A +Y+S+ + V+ + N K IRG +G L+N+ +PEL
Sbjct: 33 MVSVTIVRVTSDLSLARIYLSVFMGPDKQEVLKNIQVNSKKIRGEVGNRLKNMHKIPELL 92
Query: 101 FRYDTSLQSYWKLNALM 117
F D SL +N L+
Sbjct: 93 FYIDDSLDYAETINKLL 109
>gi|29348248|ref|NP_811751.1| ribosome-binding factor A [Bacteroides thetaiotaomicron VPI-5482]
gi|253569386|ref|ZP_04846796.1| ribosome-binding factor A [Bacteroides sp. 1_1_6]
gi|298386059|ref|ZP_06995616.1| ribosome-binding factor A [Bacteroides sp. 1_1_14]
gi|29340151|gb|AAO77945.1| ribosome-binding factor A [Bacteroides thetaiotaomicron VPI-5482]
gi|251841405|gb|EES69486.1| ribosome-binding factor A [Bacteroides sp. 1_1_6]
gi|298261287|gb|EFI04154.1| ribosome-binding factor A [Bacteroides sp. 1_1_14]
Length = 110
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Query: 41 VISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRN-LRYVPEL 99
+IS+S V +S D+ +A VY+S+ + ++ +N N+K IR +G +R+ LR +PEL
Sbjct: 32 LISVSAVRISPDMSIARVYLSVFPSEKAEEMVKNINENMKSIRFELGTRVRHQLRIIPEL 91
Query: 100 RFRYDTSLQSYWKLNALM 117
+F D SL K+++L+
Sbjct: 92 KFFVDDSLDYIEKIDSLL 109
>gi|300087634|ref|YP_003758156.1| ribosome-binding factor A [Dehalogenimonas lykanthroporepellens
BL-DC-9]
gi|299527367|gb|ADJ25835.1| ribosome-binding factor A [Dehalogenimonas lykanthroporepellens
BL-DC-9]
Length = 120
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 65/112 (58%), Gaps = 9/112 (8%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQD-RLISRDVISISEVCMSVDLRVATVYISLPLDVS 67
S R ++ + +R L V + E +D RL +++SI+ V + DL++A V++S L S
Sbjct: 2 SHRIEKINQLIREELSQV-MQREIRDPRL---ELLSINAVETTADLKLAKVFVS-HLSSS 56
Query: 68 PDR--VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+R ++ AL + RG +G+ L LRYVPEL F +D S++ +++ L+
Sbjct: 57 ENRPEIMKALGGATGYFRGELGKVL-TLRYVPELAFYWDDSIERGARMDRLI 107
>gi|270308252|ref|YP_003330310.1| ribosome-binding factor A [Dehalococcoides sp. VS]
gi|270154144|gb|ACZ61982.1| ribosome-binding factor A [Dehalococcoides sp. VS]
Length = 118
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 47/78 (60%), Gaps = 2/78 (2%)
Query: 41 VISISEVCMSVDLRVATVYIS-LPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPEL 99
++S++EV +S D+R A VY+S L + D +++ALN F R I + ++RY+P
Sbjct: 32 LLSVNEVDISEDMRHANVYVSHLSGNEHKDEILAALNTAAGFFRTEIAKKT-DIRYMPVF 90
Query: 100 RFRYDTSLQSYWKLNALM 117
F +D +++ +LN L+
Sbjct: 91 HFVWDDTIERGVRLNTLI 108
>gi|228998587|ref|ZP_04158174.1| Ribosome-binding factor A [Bacillus mycoides Rock3-17]
gi|229006087|ref|ZP_04163775.1| Ribosome-binding factor A [Bacillus mycoides Rock1-4]
gi|228755163|gb|EEM04520.1| Ribosome-binding factor A [Bacillus mycoides Rock1-4]
gi|228761055|gb|EEM10014.1| Ribosome-binding factor A [Bacillus mycoides Rock3-17]
Length = 111
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 59/104 (56%), Gaps = 5/104 (4%)
Query: 15 VGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPDRVIS 73
+GE+++ L +I + + +D I +++++V +S DL++A VYIS L + + +
Sbjct: 1 MGEQMKKELGEII-SRKIKDPRIG--FVTVTDVQVSGDLQIAKVYISVLGDEQQKENTLK 57
Query: 74 ALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
L FIR IG+ +R LR PE+ F +D S+ +++ L+
Sbjct: 58 GLAKAKGFIRAEIGQRIR-LRKTPEITFEFDESIAYGHRIDTLL 100
>gi|197121575|ref|YP_002133526.1| ribosome-binding factor A [Anaeromyxobacter sp. K]
gi|238689882|sp|B4UHG2|RBFA_ANASK RecName: Full=Ribosome-binding factor A
gi|196171424|gb|ACG72397.1| ribosome-binding factor A [Anaeromyxobacter sp. K]
Length = 138
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 56/109 (51%), Gaps = 6/109 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD--VSP 68
R RV EE R L IL +D I+ ++++ MS DL+ ATVY+S+ D V
Sbjct: 6 RPARVAEEFRHEL-SAILARGLKDPRIT-GFVTVTGSKMSPDLKEATVYVSIHGDERVRK 63
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
D + L F++ + R+LR LR P LRF YD S+ ++ L+
Sbjct: 64 D-TFAGLQAAAGFLQREVSRALR-LRNTPHLRFVYDESVARGDRIERLL 110
>gi|220916338|ref|YP_002491642.1| ribosome-binding factor A [Anaeromyxobacter dehalogenans 2CP-1]
gi|254789727|sp|B8JFY8|RBFA_ANAD2 RecName: Full=Ribosome-binding factor A
gi|219954192|gb|ACL64576.1| ribosome-binding factor A [Anaeromyxobacter dehalogenans 2CP-1]
Length = 139
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 56/109 (51%), Gaps = 6/109 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD--VSP 68
R RV EE R L IL +D I+ ++++ MS DL+ ATVY+S+ D V
Sbjct: 6 RPARVAEEFRHEL-SAILARGLKDPRIT-GFVTVTGSKMSPDLKEATVYVSIHGDERVRK 63
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
D + L F++ + R+LR LR P LRF YD S+ ++ L+
Sbjct: 64 D-TFAGLQAAAGFLQREVSRALR-LRNTPHLRFVYDESVARGDRIERLL 110
>gi|315648093|ref|ZP_07901194.1| ribosome-binding factor A [Paenibacillus vortex V453]
gi|315276739|gb|EFU40082.1| ribosome-binding factor A [Paenibacillus vortex V453]
Length = 117
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 57/109 (52%), Gaps = 5/109 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
R RVGE+++ L +I E +D I I+++ V ++ DL A +Y+S L D
Sbjct: 5 RTGRVGEQIKKELSQLI-QTEMKDPRIG--FITVTGVDVTNDLSQAKIYLSVLGDDEQKA 61
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ L F+R +G+ +R LR+VPEL F++D S+ + L+
Sbjct: 62 ASLKGLEKASGFLRSELGKRIR-LRHVPELIFKFDDSIAYGSHIEKLLT 109
>gi|293393152|ref|ZP_06637467.1| ribosome-binding factor A [Serratia odorifera DSM 4582]
gi|291424298|gb|EFE97512.1| ribosome-binding factor A [Serratia odorifera DSM 4582]
Length = 136
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 63/120 (52%), Gaps = 11/120 (9%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS---- 61
K R RV +E++ + +IL E +D + + ++S V +S DL A VY++
Sbjct: 2 AKEFSRGQRVAQEMQKEI-AIILQREVKDPRVG--MATVSGVEVSRDLAYAKVYVTFLNV 58
Query: 62 LPLDVSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
L + PD V I AL +IR +G+++R LR VPEL F YD SL +++ L+
Sbjct: 59 LTENHDPDLVTNGIKALQDASGYIRTLLGKAMR-LRVVPELTFAYDNSLVEGMRMSNLVT 117
>gi|319649518|ref|ZP_08003674.1| ribosome-binding factor A [Bacillus sp. 2_A_57_CT2]
gi|317398680|gb|EFV79362.1| ribosome-binding factor A [Bacillus sp. 2_A_57_CT2]
Length = 126
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 62/110 (56%), Gaps = 5/110 (4%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
S RA RVGE+++ L +I + +D + +++++V ++ DL+ ATV+IS+ D
Sbjct: 2 SLRANRVGEQMKKELGEII-GRKIKDPRVG--FVTVTDVQVTGDLQQATVFISVLGDEEQ 58
Query: 69 -DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ + L FIR IG+ +R LR PE+ F +D S+ ++ +L+
Sbjct: 59 RENTLRGLAKAKGFIRSEIGQRIR-LRKTPEILFEFDESIDYGNRIESLL 107
>gi|282880568|ref|ZP_06289275.1| ribosome-binding factor A [Prevotella timonensis CRIS 5C-B1]
gi|281305671|gb|EFA97724.1| ribosome-binding factor A [Prevotella timonensis CRIS 5C-B1]
Length = 111
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 33 QDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRN 92
Q R ++S++ V +S DL V T Y+S+ D ++ +N N K IR +G +RN
Sbjct: 24 QTRATHGVMVSVTRVRVSPDLSVCTAYLSIFPSEKGDEILENINKNNKSIRYELGSRMRN 83
Query: 93 -LRYVPELRFRYDTSLQSYWKLNALM 117
LR +PELRF D SL ++ L+
Sbjct: 84 QLRIIPELRFFIDDSLDYIEHIDELL 109
>gi|255689941|ref|ZP_05413616.1| ribosome-binding factor A [Bacteroides finegoldii DSM 17565]
gi|260624547|gb|EEX47418.1| ribosome-binding factor A [Bacteroides finegoldii DSM 17565]
Length = 110
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Query: 41 VISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRN-LRYVPEL 99
++S+S V +S D+ +A VY+S+ + ++ +N N+K IR +G +R+ LR +PEL
Sbjct: 32 LVSVSAVRISPDMSIARVYLSVFPSEKAEEIVKNVNDNMKTIRYELGTRVRHQLRIIPEL 91
Query: 100 RFRYDTSLQSYWKLNALM 117
+F D SL K+++L+
Sbjct: 92 KFFVDDSLDYIEKIDSLL 109
>gi|29654722|ref|NP_820414.1| ribosome-binding factor A [Coxiella burnetii RSA 493]
gi|153207247|ref|ZP_01946011.1| ribosome-binding factor A [Coxiella burnetii 'MSU Goat Q177']
gi|154707600|ref|YP_001423974.1| ribosome-binding factor A [Coxiella burnetii Dugway 5J108-111]
gi|161830027|ref|YP_001597275.1| ribosome-binding factor A [Coxiella burnetii RSA 331]
gi|165918811|ref|ZP_02218897.1| ribosome-binding factor A [Coxiella burnetii RSA 334]
gi|212218230|ref|YP_002305017.1| ribosome-binding factor A [Coxiella burnetii CbuK_Q154]
gi|34098454|sp|Q83BS2|RBFA_COXBU RecName: Full=Ribosome-binding factor A
gi|189039536|sp|A9KBM2|RBFA_COXBN RecName: Full=Ribosome-binding factor A
gi|189039537|sp|A9N8V5|RBFA_COXBR RecName: Full=Ribosome-binding factor A
gi|226723595|sp|B6J6B2|RBFA_COXB1 RecName: Full=Ribosome-binding factor A
gi|29541990|gb|AAO90928.1| ribosome-binding factor A [Coxiella burnetii RSA 493]
gi|120576735|gb|EAX33359.1| ribosome-binding factor A [Coxiella burnetii 'MSU Goat Q177']
gi|154356886|gb|ABS78348.1| ribosome-binding factor A [Coxiella burnetii Dugway 5J108-111]
gi|161761894|gb|ABX77536.1| ribosome-binding factor A [Coxiella burnetii RSA 331]
gi|165917535|gb|EDR36139.1| ribosome-binding factor A [Coxiella burnetii RSA 334]
gi|212012492|gb|ACJ19872.1| ribosome-binding factor A [Coxiella burnetii CbuK_Q154]
Length = 119
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 61/109 (55%), Gaps = 4/109 (3%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
S+R RV + + L +L E +D +S+ IS++ V +S DL+ A V+ SL + +
Sbjct: 2 SQRQQRVADLIHQQLAE-LLKKEVRDSRLSK--ISLTAVSISPDLKQAKVFYSLLENQNE 58
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
V ALN ++R + ++ LRYVP+L F YD S++ +++ L+
Sbjct: 59 KEVQKALNKATGYLRHLLAQAT-VLRYVPKLEFVYDESIERAHRISLLI 106
>gi|327398880|ref|YP_004339749.1| Ribosome-binding factor A [Hippea maritima DSM 10411]
gi|327181509|gb|AEA33690.1| Ribosome-binding factor A [Hippea maritima DSM 10411]
Length = 133
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 66/114 (57%), Gaps = 7/114 (6%)
Query: 7 KNS--RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL 64
KNS +R RV +++ A+ ++ ++L S I++++V M+ DLR+A +++S +
Sbjct: 4 KNSSFKRKDRVASQIKKAVSEILEFESGNEKLRS---ITLTDVEMTKDLRIAKIFVSSSM 60
Query: 65 -DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+++ + L FI+ + +R L+Y+P+L F YD S+ +K+++++
Sbjct: 61 TEMTQKDTLDVLESAKGFIKKNLATKVR-LKYMPKLIFEYDASINYGFKIDSIL 113
>gi|291460968|ref|ZP_06026144.2| ribosome-binding factor A [Fusobacterium periodonticum ATCC 33693]
gi|291379766|gb|EFE87284.1| ribosome-binding factor A [Fusobacterium periodonticum ATCC 33693]
Length = 123
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 50/86 (58%), Gaps = 8/86 (9%)
Query: 39 RDVISISEVCMSVDLRVATVYISL--PLD-----VSPDRVISALNCNIKFIRGRIGRSLR 91
+ ++S++EV ++ DL+ A Y S+ PLD + ++ ALN F+R R+ +
Sbjct: 34 KGLVSVTEVNVTEDLKFADTYFSILPPLDNEENQYEHEEILEALNEIKGFLRKRVAEEV- 92
Query: 92 NLRYVPELRFRYDTSLQSYWKLNALM 117
++R+ PE+R + D S+++ K+ L+
Sbjct: 93 DIRFTPEIRVKLDNSMENAMKITKLL 118
>gi|261212245|ref|ZP_05926531.1| ribosome-binding factor A [Vibrio sp. RC341]
gi|262401658|ref|ZP_06078224.1| ribosome-binding factor A [Vibrio sp. RC586]
gi|260838853|gb|EEX65504.1| ribosome-binding factor A [Vibrio sp. RC341]
gi|262352075|gb|EEZ01205.1| ribosome-binding factor A [Vibrio sp. RC586]
Length = 132
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 64/113 (56%), Gaps = 6/113 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL- 64
PK R RV ++++ L +IL E +D + +++IS+V +S DL A V+++
Sbjct: 2 PKEFSRTQRVAQQLQKEL-AMILQREVRDSRLG--MVTISDVEVSRDLAYAKVFVTFLCI 58
Query: 65 -DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNAL 116
+ +P+ ++AL + IR +G+ +R LR PE+RF YD +L +++ L
Sbjct: 59 GEQTPESCLAALREHEVQIRMMLGKQIR-LRLTPEIRFYYDNTLVEGMRMSNL 110
>gi|56963991|ref|YP_175722.1| ribosome-binding factor A [Bacillus clausii KSM-K16]
gi|61214762|sp|Q5WFU4|RBFA_BACSK RecName: Full=Ribosome-binding factor A
gi|56910234|dbj|BAD64761.1| ribosome-binding factor A [Bacillus clausii KSM-K16]
Length = 118
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 62/108 (57%), Gaps = 5/108 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
RA+RVGE+++ L +++ + R+ ++++ V ++ DL+ AT +I++ D +
Sbjct: 5 RAVRVGEQMKKELSDILIRDIKDPRV---RFVTVTGVDVTGDLQQATAFITVLGDEEERK 61
Query: 71 -VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
++ L FIR +G+ +R LR PEL F +D S+Q ++ +L+
Sbjct: 62 ATLAGLEKAKGFIRTELGKRIR-LRKTPELSFSFDESIQYGNRIESLL 108
>gi|37528347|ref|NP_931692.1| ribosome-binding factor A [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|39931723|sp|Q7MYY8|RBFA_PHOLL RecName: Full=Ribosome-binding factor A
gi|36787785|emb|CAE16900.1| ribosome-binding factor A (fragment) [Photorhabdus luminescens
subsp. laumondii TTO1]
Length = 136
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 62/115 (53%), Gaps = 11/115 (9%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS----LPLDV 66
R RV +E++ + +IL E +D I + ++S V +S DL A V+++ L +
Sbjct: 7 RTQRVAQEMQKEI-AIILQREVKDPRIG--MATVSGVEVSRDLAYAKVFVTFLNVLTEEH 63
Query: 67 SPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
D V I ALN FIR +G+++R LR VPEL F YD SL +++ L+
Sbjct: 64 DSDVVKNGIKALNEASGFIRSLLGKAMR-LRVVPELTFSYDNSLVEGMRMSNLVT 117
>gi|95929625|ref|ZP_01312367.1| ribosome-binding factor A [Desulfuromonas acetoxidans DSM 684]
gi|95134322|gb|EAT15979.1| ribosome-binding factor A [Desulfuromonas acetoxidans DSM 684]
Length = 119
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 60/110 (54%), Gaps = 5/110 (4%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVS 67
++R RV E++ + ++L R+ ++I+ V +S DLR A ++ + + +
Sbjct: 3 TQRTYRVAEQIHKEISDIMLRGLRDPRV---GFVTITSVDISSDLRHAKIFFTVMGEEAD 59
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
++ L+ + F+R +G+ ++ LR+VP+L F+YDTS+ + L+
Sbjct: 60 AEKTQQGLDSAVPFLRRELGKRMK-LRHVPDLVFKYDTSIAYGSHIEELL 108
>gi|161582021|ref|NP_230293.2| ribosome-binding factor A [Vibrio cholerae O1 biovar El Tor str.
N16961]
gi|255744139|ref|ZP_05418092.1| ribosome-binding factor A [Vibrio cholera CIRS 101]
gi|258624685|ref|ZP_05719619.1| ribosome-binding factor A [Vibrio mimicus VM603]
gi|262156115|ref|ZP_06029234.1| ribosome-binding factor A [Vibrio cholerae INDRE 91/1]
gi|262169943|ref|ZP_06037633.1| ribosome-binding factor A [Vibrio cholerae RC27]
gi|262189598|ref|ZP_06047996.1| ribosome-binding factor A [Vibrio cholerae CT 5369-93]
gi|20978661|sp|Q9KU79|RBFA_VIBCH RecName: Full=Ribosome-binding factor A
gi|172047750|sp|A5F927|RBFA_VIBC3 RecName: Full=Ribosome-binding factor A
gi|255738079|gb|EET93471.1| ribosome-binding factor A [Vibrio cholera CIRS 101]
gi|258582972|gb|EEW07787.1| ribosome-binding factor A [Vibrio mimicus VM603]
gi|262021677|gb|EEY40388.1| ribosome-binding factor A [Vibrio cholerae RC27]
gi|262030151|gb|EEY48796.1| ribosome-binding factor A [Vibrio cholerae INDRE 91/1]
gi|262034521|gb|EEY52863.1| ribosome-binding factor A [Vibrio cholerae CT 5369-93]
gi|327483445|gb|AEA77852.1| Ribosome-binding factor A [Vibrio cholerae LMA3894-4]
Length = 132
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 65/114 (57%), Gaps = 6/114 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL- 64
PK R RV ++++ L +IL E +D + +++IS+V +S DL A V+++
Sbjct: 2 PKEFSRTQRVAQQLQKEL-AMILQREVRDSRLG--MVTISDVEVSRDLAYAKVFVTFLCI 58
Query: 65 -DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ +P+ ++AL + IR +G+ +R LR PE+RF YD +L +++ L+
Sbjct: 59 GEQTPESCLAALREHEVQIRMMLGKQIR-LRLTPEIRFYYDNTLVEGMRMSNLV 111
>gi|197287231|ref|YP_002153103.1| ribosome-binding factor A [Proteus mirabilis HI4320]
gi|227357074|ref|ZP_03841444.1| ribosome-binding factor A [Proteus mirabilis ATCC 29906]
gi|238690098|sp|B4F2C0|RBFA_PROMH RecName: Full=Ribosome-binding factor A
gi|194684718|emb|CAR46706.1| ribosome-binding factor A [Proteus mirabilis HI4320]
gi|227162766|gb|EEI47729.1| ribosome-binding factor A [Proteus mirabilis ATCC 29906]
Length = 133
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 64/117 (54%), Gaps = 14/117 (11%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP-- 68
RA RV +E++ + +IL E +D I + ++S V +S DL A V+++ L++S
Sbjct: 7 RAQRVSQEMQKEI-AIILQREVKDPRIG--MATVSGVEISRDLAYAKVFVTF-LNLSAGE 62
Query: 69 -------DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ + ALN FIR +G+++R LR VPEL F YD SL +++ L+
Sbjct: 63 ESDEEMVENGLKALNEAAGFIRSLLGKAMR-LRVVPELTFAYDNSLVEGMRMSNLVS 118
>gi|152980431|ref|YP_001354184.1| ribosome-binding factor A [Janthinobacterium sp. Marseille]
gi|172049092|sp|A6T0Y7|RBFA_JANMA RecName: Full=Ribosome-binding factor A
gi|151280508|gb|ABR88918.1| ribosome-binding factor A [Janthinobacterium sp. Marseille]
Length = 128
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 59/109 (54%), Gaps = 6/109 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPD- 69
R LRV ++++ L +I E +D + +I+I+EV ++ D A V+ ++ D D
Sbjct: 11 RGLRVADQIQRDLSEIIAF-ELKDPRVG--MITITEVQVTPDYAHAKVFFTMLSDKKDDI 67
Query: 70 -RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+S L +IRG++GR L + +PEL F +DTS +++ L+
Sbjct: 68 KNTVSGLTAASGYIRGQLGRRL-TIHTLPELHFVHDTSTARGIEMSKLI 115
>gi|269137764|ref|YP_003294464.1| ribosome-binding factor A [Edwardsiella tarda EIB202]
gi|267983424|gb|ACY83253.1| ribosome-binding factor A [Edwardsiella tarda EIB202]
gi|304557821|gb|ADM40485.1| Ribosome-binding factor A [Edwardsiella tarda FL6-60]
Length = 132
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 60/111 (54%), Gaps = 7/111 (6%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
R RV +E++ + +IL E +D + + ++S V +S DL V+++ D P+
Sbjct: 7 RTQRVAQEMQKEI-AIILQREVKDPRVG--MATVSGVEVSRDLAYTKVFVTFLNDGEPET 63
Query: 71 V---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
V + AL FIR +G+++R LR VPEL F YD SL +++ L+
Sbjct: 64 VKAGLKALQDASGFIRMLLGKAMR-LRVVPELTFAYDASLVEGMRMSNLVS 113
>gi|324119534|gb|EGC13416.1| ribosome-binding proteinA [Escherichia coli E1167]
Length = 100
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 41 VISISEVCMSVDLRVATVYISLPLDVSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVP 97
+ ++S V MS DL A VY++ D D V I AL FIR +G+++R LR VP
Sbjct: 2 MTTVSGVEMSRDLAYAKVYVTFLNDKDEDAVKAGIKALQEASGFIRSLLGKAMR-LRIVP 60
Query: 98 ELRFRYDTSLQSYWKLNALMC 118
EL F YD SL +++ L+
Sbjct: 61 ELTFFYDNSLVEGMRMSNLVT 81
>gi|167552067|ref|ZP_02345820.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA29]
gi|168243119|ref|ZP_02668051.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL486]
gi|168262704|ref|ZP_02684677.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Hadar str. RI_05P066]
gi|168463492|ref|ZP_02697409.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Newport str. SL317]
gi|194446175|ref|YP_002042542.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Newport str. SL254]
gi|194448489|ref|YP_002047314.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL476]
gi|197263114|ref|ZP_03163188.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA23]
gi|238690662|sp|B4TJ05|RBFA_SALHS RecName: Full=Ribosome-binding factor A
gi|238693632|sp|B4T6Z7|RBFA_SALNS RecName: Full=Ribosome-binding factor A
gi|194404838|gb|ACF65060.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Newport str. SL254]
gi|194406793|gb|ACF67012.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL476]
gi|195633310|gb|EDX51724.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Newport str. SL317]
gi|197241369|gb|EDY23989.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA23]
gi|205323213|gb|EDZ11052.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA29]
gi|205337734|gb|EDZ24498.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL486]
gi|205348416|gb|EDZ35047.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Hadar str. RI_05P066]
Length = 133
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 60/115 (52%), Gaps = 6/115 (5%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
K R RV +E++ + +IL E +D + + ++S V MS DL A V+++ D
Sbjct: 3 KEFGRPQRVAQEMQKEI-AIILQREIKDPRLGM-MTTVSGVEMSRDLAYAKVFVTFLNDQ 60
Query: 67 SPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
V I AL FIR +G+++R LR VPEL F YD SL +++ L+
Sbjct: 61 DEAAVKNGIKALQEASGFIRSLLGKAMR-LRIVPELTFFYDNSLVEGMRMSNLVT 114
>gi|329962338|ref|ZP_08300343.1| ribosome-binding factor A [Bacteroides fluxus YIT 12057]
gi|328530199|gb|EGF57080.1| ribosome-binding factor A [Bacteroides fluxus YIT 12057]
Length = 110
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 41 VISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRN-LRYVPEL 99
++S+S V +S D+ VA Y+S+ + +I +N N+K +R +G +R+ LR VPEL
Sbjct: 32 LVSVSAVRISPDMSVARAYLSIFPSEKGEEMIKNINANMKSVRYELGTRVRHQLRIVPEL 91
Query: 100 RFRYDTSLQSYWKLNALM 117
+F D SL K++ L+
Sbjct: 92 KFFVDDSLDYLEKIDELL 109
>gi|212212199|ref|YP_002303135.1| ribosome-binding factor A [Coxiella burnetii CbuG_Q212]
gi|226723596|sp|B6IZ62|RBFA_COXB2 RecName: Full=Ribosome-binding factor A
gi|212010609|gb|ACJ17990.1| ribosome-binding factor A [Coxiella burnetii CbuG_Q212]
Length = 119
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 61/109 (55%), Gaps = 4/109 (3%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
S+R RV + + L +L E +D +S+ IS++ V +S DL+ A V+ SL + +
Sbjct: 2 SQRQQRVADLIHQQLAE-LLKKEVRDSRLSK--ISLTAVSISPDLKQAKVFYSLLENQNE 58
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
V ALN ++R + ++ LRYVP+L F YD S++ +++ L+
Sbjct: 59 KEVQKALNKATGYLRHLLAQAT-VLRYVPKLEFVYDESIERAHRISFLI 106
>gi|312898339|ref|ZP_07757729.1| ribosome-binding factor A [Megasphaera micronuciformis F0359]
gi|310620258|gb|EFQ03828.1| ribosome-binding factor A [Megasphaera micronuciformis F0359]
Length = 115
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 47/77 (61%), Gaps = 2/77 (2%)
Query: 42 ISISEVCMSVDLRVATVYISL-PLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELR 100
+++++ ++ DLR ATVY+SL D ++AL+ +IR +G+ L +RY P++
Sbjct: 33 VTVTDARITGDLREATVYVSLFGSDEEKKNTLAALSKAQGYIRSEVGKRL-GIRYSPQIE 91
Query: 101 FRYDTSLQSYWKLNALM 117
F+ D SL+ K+ +++
Sbjct: 92 FKEDESLEYGMKIESIL 108
>gi|222055782|ref|YP_002538144.1| ribosome-binding factor A [Geobacter sp. FRC-32]
gi|254789751|sp|B9M1G1|RBFA_GEOSF RecName: Full=Ribosome-binding factor A
gi|221565071|gb|ACM21043.1| ribosome-binding factor A [Geobacter sp. FRC-32]
Length = 123
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 60/109 (55%), Gaps = 5/109 (4%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSP 68
+R+ +V E V L+ +L +D I ++I+ V ++ D+ +AT+Y + + D
Sbjct: 3 KRSEKVAEAVHE-LVSELLVKGLKDPRIG--FVTITGVKVTDDMHLATIYFTVIGSDEEK 59
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
LN FIR +G+S R +RYVP++ F+YD S++ ++ +++
Sbjct: 60 KATEQGLNSARGFIRKEMGKSFR-MRYVPDIVFKYDASVEYGSRIESIL 107
>gi|188026375|ref|ZP_02961860.2| hypothetical protein PROSTU_03932 [Providencia stuartii ATCC 25827]
gi|188020158|gb|EDU58198.1| hypothetical protein PROSTU_03932 [Providencia stuartii ATCC 25827]
Length = 142
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 64/116 (55%), Gaps = 13/116 (11%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
R+ RV +E++ + +IL E +D I + ++S V +S DL V+++ L++S +
Sbjct: 13 RSQRVAQEMQKEI-AIILQREVKDPRIG--MATVSGVELSRDLAYGKVFVTF-LNISHEE 68
Query: 71 --------VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
I ALN FIR +G+++R LR +PEL F YD+SL +++ L+
Sbjct: 69 HESQMVQDGIKALNEASGFIRSLLGKAMR-LRVIPELTFSYDSSLVDGMRMSNLVS 123
>gi|160884142|ref|ZP_02065145.1| hypothetical protein BACOVA_02119 [Bacteroides ovatus ATCC 8483]
gi|237717204|ref|ZP_04547685.1| ribosome-binding factor A [Bacteroides sp. D1]
gi|237721800|ref|ZP_04552281.1| ribosome-binding factor A [Bacteroides sp. 2_2_4]
gi|260173073|ref|ZP_05759485.1| putative ribosome-binding factor A [Bacteroides sp. D2]
gi|262405972|ref|ZP_06082522.1| ribosome-binding factor A [Bacteroides sp. 2_1_22]
gi|293372464|ref|ZP_06618848.1| ribosome-binding factor A [Bacteroides ovatus SD CMC 3f]
gi|294647944|ref|ZP_06725496.1| ribosome-binding factor A [Bacteroides ovatus SD CC 2a]
gi|294806342|ref|ZP_06765189.1| ribosome-binding factor A [Bacteroides xylanisolvens SD CC 1b]
gi|298479976|ref|ZP_06998175.1| ribosome-binding factor A [Bacteroides sp. D22]
gi|299144799|ref|ZP_07037867.1| ribosome-binding factor A [Bacteroides sp. 3_1_23]
gi|315921350|ref|ZP_07917590.1| ribosome-binding factor A [Bacteroides sp. D2]
gi|156110484|gb|EDO12229.1| hypothetical protein BACOVA_02119 [Bacteroides ovatus ATCC 8483]
gi|229443187|gb|EEO48978.1| ribosome-binding factor A [Bacteroides sp. D1]
gi|229448669|gb|EEO54460.1| ribosome-binding factor A [Bacteroides sp. 2_2_4]
gi|262356847|gb|EEZ05937.1| ribosome-binding factor A [Bacteroides sp. 2_1_22]
gi|292632647|gb|EFF51241.1| ribosome-binding factor A [Bacteroides ovatus SD CMC 3f]
gi|292636852|gb|EFF55318.1| ribosome-binding factor A [Bacteroides ovatus SD CC 2a]
gi|294446598|gb|EFG15218.1| ribosome-binding factor A [Bacteroides xylanisolvens SD CC 1b]
gi|295085580|emb|CBK67103.1| ribosome-binding factor A [Bacteroides xylanisolvens XB1A]
gi|298273785|gb|EFI15347.1| ribosome-binding factor A [Bacteroides sp. D22]
gi|298515290|gb|EFI39171.1| ribosome-binding factor A [Bacteroides sp. 3_1_23]
gi|313695225|gb|EFS32060.1| ribosome-binding factor A [Bacteroides sp. D2]
Length = 110
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 52/87 (59%), Gaps = 1/87 (1%)
Query: 32 FQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLR 91
Q + + ++S+S V +S D+ +A VY+S+ + ++ +N N+K IR +G +R
Sbjct: 23 LQTKSMPGTLVSVSAVRISPDMSIARVYLSVFPSEKAEEMVKNINNNMKSIRYELGTRVR 82
Query: 92 N-LRYVPELRFRYDTSLQSYWKLNALM 117
+ LR +PEL+F D SL K+++L+
Sbjct: 83 HQLRIIPELKFFVDDSLDYIEKIDSLL 109
>gi|153805797|ref|ZP_01958465.1| hypothetical protein BACCAC_00033 [Bacteroides caccae ATCC 43185]
gi|149130474|gb|EDM21680.1| hypothetical protein BACCAC_00033 [Bacteroides caccae ATCC 43185]
Length = 110
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 51/87 (58%), Gaps = 1/87 (1%)
Query: 32 FQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLR 91
Q + + ++S+S V +S D+ +A VY+S+ + ++ +N N+K IR +G +R
Sbjct: 23 LQTKAMHGTLVSVSAVRISPDMSIARVYLSVFPSEKAEEMVKNINDNMKSIRYELGTRVR 82
Query: 92 -NLRYVPELRFRYDTSLQSYWKLNALM 117
LR +PEL+F D SL K+++L+
Sbjct: 83 YQLRIIPELKFFVDDSLDYIEKIDSLL 109
>gi|331269627|ref|YP_004396119.1| ribosome-binding factor A [Clostridium botulinum BKT015925]
gi|329126177|gb|AEB76122.1| ribosome-binding factor A [Clostridium botulinum BKT015925]
Length = 121
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 58/109 (53%), Gaps = 4/109 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
R R+ EEVR + +I ++ RL + ++SI+ V ++ DLR A V+IS + S
Sbjct: 5 RLGRINEEVRKEISNIIRDDIHDPRLTA--MVSITRVEVTNDLRYAKVFISVFGSESSKK 62
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ AL ++ F+R +G ++ LR PE+ D S++ +N L+
Sbjct: 63 ETLEALKSSVGFMRREVGHRVK-LRCTPEIILELDESIEHGMHINDLLS 110
>gi|311277860|ref|YP_003940091.1| ribosome-binding factor A [Enterobacter cloacae SCF1]
gi|308747055|gb|ADO46807.1| ribosome-binding factor A [Enterobacter cloacae SCF1]
Length = 134
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 60/115 (52%), Gaps = 6/115 (5%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
K R RV +E++ + +IL E +D + + ++S V MS DL A V+++ D
Sbjct: 3 KEFGRPQRVAQEMQKEI-AIILQREIKDPRLGM-MTTVSGVEMSRDLAYAKVFVTFLNDK 60
Query: 67 SPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
V I AL FIR +G+++R LR VPEL F YD SL +++ L+
Sbjct: 61 DEAAVKAGIKALQEASGFIRSLLGKAMR-LRIVPELTFFYDNSLVEGMRMSNLVT 114
>gi|188586071|ref|YP_001917616.1| ribosome-binding factor A [Natranaerobius thermophilus JW/NM-WN-LF]
gi|229568641|sp|B2A398|RBFA_NATTJ RecName: Full=Ribosome-binding factor A
gi|179350758|gb|ACB85028.1| ribosome-binding factor A [Natranaerobius thermophilus JW/NM-WN-LF]
Length = 131
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 60/108 (55%), Gaps = 5/108 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
R ++ EE++ ++ IL E +D + ++++ V +S DLR A V++S L +
Sbjct: 5 RKEKLQEELK-KIISDILQREVKDPSVG--FVTVTSVDLSGDLRHAKVFVSILGEKENQQ 61
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ L FIR +G+ +R LR+VPE+ F++D S++ +N L+
Sbjct: 62 DSLRGLEKATGFIRSELGKRVR-LRHVPEIVFKFDESIEHGDHINKLL 108
>gi|255038621|ref|YP_003089242.1| ribosome-binding factor A [Dyadobacter fermentans DSM 18053]
gi|254951377|gb|ACT96077.1| ribosome-binding factor A [Dyadobacter fermentans DSM 18053]
Length = 127
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 59/119 (49%), Gaps = 3/119 (2%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS 67
S+R +VG +++ L + + L ++I+ V ++ DL +A Y+S D +
Sbjct: 2 ESKRQQKVGRQIQKDLGEIFQKDA--QHLTHGSFVTITAVRVTPDLSIARAYLSFLPDKN 59
Query: 68 PDRVISALNCNIKFIRGRIGRSLRN-LRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
++ + N +FIR ++ +R+ LR VP L+F D + + K++ L IP A
Sbjct: 60 KTMLLETIRENTRFIRQKLAERVRHQLRIVPHLQFYIDDTAEYAAKMDQLFADLVIPPA 118
>gi|261345160|ref|ZP_05972804.1| ribosome-binding factor A [Providencia rustigianii DSM 4541]
gi|282566851|gb|EFB72386.1| ribosome-binding factor A [Providencia rustigianii DSM 4541]
Length = 137
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 63/121 (52%), Gaps = 12/121 (9%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K R+ RV +E++ + +IL E +D I + ++S V +S DL V+++
Sbjct: 2 AKEFSRSQRVAQEMQKEI-AIILQREIKDPRIG--MATVSGVELSRDLAYGKVFVTFFNI 58
Query: 66 VSPDRV--------ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ D+ I ALN FIR +G+++R LR +PEL F YD+SL +++ L+
Sbjct: 59 ANDDKSEAEMVAEGIKALNEASGFIRSLLGKAMR-LRIIPELTFEYDSSLVDGMRMSNLV 117
Query: 118 C 118
Sbjct: 118 S 118
>gi|253573568|ref|ZP_04850911.1| ribosome-binding factor A [Paenibacillus sp. oral taxon 786 str.
D14]
gi|251847096|gb|EES75101.1| ribosome-binding factor A [Paenibacillus sp. oral taxon 786 str.
D14]
Length = 117
Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 59/109 (54%), Gaps = 5/109 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP-D 69
R RVGE+++ L V++ +E +D I ++++ V ++ DL A VY+S+ D +
Sbjct: 5 RTGRVGEQIKKEL-SVLIQSELKDPRIG--FVTVTGVDVTNDLSQAKVYLSVFGDEEQKN 61
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ L F+R IG+ +R LR+ PEL F+ D S+ ++ L+
Sbjct: 62 ESLKGLEKATGFLRTEIGKRIR-LRHTPELIFKIDESIAYGSRIEKLLG 109
>gi|237730087|ref|ZP_04560568.1| ribosome-binding factor A [Citrobacter sp. 30_2]
gi|226908693|gb|EEH94611.1| ribosome-binding factor A [Citrobacter sp. 30_2]
Length = 140
Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 60/115 (52%), Gaps = 6/115 (5%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
K R RV +E++ + +IL E +D + + ++S V MS DL A V+++ D
Sbjct: 9 KEFGRPQRVAQEMQKEI-ALILQREIKDPRVGM-MTTVSGVEMSRDLAYAKVFVTFLNDQ 66
Query: 67 SPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
V I AL FIR +G+++R LR VPEL F YD SL +++ L+
Sbjct: 67 DEAAVKNGIKALQEASGFIRSLLGKAMR-LRIVPELTFFYDNSLVEGMRMSNLVT 120
>gi|16762050|ref|NP_457667.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Typhi str. CT18]
gi|29143539|ref|NP_806881.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|56415217|ref|YP_152292.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|62181796|ref|YP_218213.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SC-B67]
gi|161616291|ref|YP_001590256.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Paratyphi B str. SPB7]
gi|168819646|ref|ZP_02831646.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Weltevreden str. HI_N05-537]
gi|197247816|ref|YP_002148211.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Agona str. SL483]
gi|197364147|ref|YP_002143784.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|204928299|ref|ZP_03219499.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Javiana str. GA_MM04042433]
gi|213029804|ref|ZP_03344251.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Typhi str. 404ty]
gi|213052980|ref|ZP_03345858.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Typhi str. E00-7866]
gi|213416951|ref|ZP_03350095.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Typhi str. E01-6750]
gi|213425435|ref|ZP_03358185.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Typhi str. E02-1180]
gi|213582314|ref|ZP_03364140.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Typhi str. E98-0664]
gi|213620436|ref|ZP_03373262.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Typhi str. E98-2068]
gi|213646147|ref|ZP_03376200.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Typhi str. J185]
gi|213852745|ref|ZP_03382277.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Typhi str. M223]
gi|224585083|ref|YP_002638882.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|238910080|ref|ZP_04653917.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Tennessee str. CDC07-0191]
gi|289810349|ref|ZP_06540978.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Typhi str. AG3]
gi|289825799|ref|ZP_06544967.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Typhi str. E98-3139]
gi|20978598|sp|Q8Z3H8|RBFA_SALTI RecName: Full=Ribosome-binding factor A
gi|61214734|sp|Q5PLB1|RBFA_SALPA RecName: Full=Ribosome-binding factor A
gi|75480587|sp|Q57JI0|RBFA_SALCH RecName: Full=Ribosome-binding factor A
gi|189039556|sp|A9N731|RBFA_SALPB RecName: Full=Ribosome-binding factor A
gi|226723607|sp|B5F6T7|RBFA_SALA4 RecName: Full=Ribosome-binding factor A
gi|238690733|sp|B5BGJ4|RBFA_SALPK RecName: Full=Ribosome-binding factor A
gi|254789762|sp|C0PZ53|RBFA_SALPC RecName: Full=Ribosome-binding factor A
gi|25302109|pir||AG0901 ribosome-binding factor A (P15B protein) [imported] - Salmonella
enterica subsp. enterica serovar Typhi (strain CT18)
gi|16504353|emb|CAD07805.1| ribosome-binding factor A (P15B protein) [Salmonella enterica
subsp. enterica serovar Typhi]
gi|29139173|gb|AAO70741.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|56129474|gb|AAV78980.1| ribosome-binding factor A (P15B protein) [Salmonella enterica
subsp. enterica serovar Paratyphi A str. ATCC 9150]
gi|62129429|gb|AAX67132.1| tRNA pseudouridine 5S synthase [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SC-B67]
gi|161365655|gb|ABX69423.1| hypothetical protein SPAB_04097 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|197095624|emb|CAR61192.1| ribosome-binding factor A (P15B protein) [Salmonella enterica
subsp. enterica serovar Paratyphi A str. AKU_12601]
gi|197211519|gb|ACH48916.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Agona str. SL483]
gi|204322621|gb|EDZ07818.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Javiana str. GA_MM04042433]
gi|205343329|gb|EDZ30093.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Weltevreden str. HI_N05-537]
gi|224469611|gb|ACN47441.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|320087732|emb|CBY97496.1| Ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Weltevreden str. 2007-60-3289-1]
gi|322716283|gb|EFZ07854.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Choleraesuis str. A50]
Length = 133
Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 60/115 (52%), Gaps = 6/115 (5%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
K R RV +E++ + +IL E +D + + ++S V MS DL A V+++ D
Sbjct: 3 KEFGRPQRVAQEMQKEI-ALILQREIKDPRVGM-MTTVSGVEMSRDLAYAKVFVTFLNDQ 60
Query: 67 SPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
V I AL FIR +G+++R LR VPEL F YD SL +++ L+
Sbjct: 61 DEAAVKNGIKALQEASGFIRSLLGKAMR-LRIVPELTFFYDNSLVEGMRMSNLVT 114
>gi|146313239|ref|YP_001178313.1| ribosome-binding factor A [Enterobacter sp. 638]
gi|166918676|sp|A4WEY2|RBFA_ENT38 RecName: Full=Ribosome-binding factor A
gi|145320115|gb|ABP62262.1| ribosome-binding factor A [Enterobacter sp. 638]
Length = 133
Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 60/115 (52%), Gaps = 6/115 (5%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
K R RV +E++ + +IL E +D + + ++S V MS DL A V+++ D
Sbjct: 3 KEFGRPQRVAQEMQKEI-ALILQREIKDPRVGM-MTTVSGVEMSRDLAYAKVFVTFLNDQ 60
Query: 67 SPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
V I AL FIR +G+++R LR VPEL F YD SL +++ L+
Sbjct: 61 DEAAVKNGIKALQEASGFIRSLLGKAMR-LRIVPELTFFYDNSLVEGMRMSNLVT 114
>gi|283836287|ref|ZP_06356028.1| ribosome-binding factor A [Citrobacter youngae ATCC 29220]
gi|291067650|gb|EFE05759.1| ribosome-binding factor A [Citrobacter youngae ATCC 29220]
Length = 134
Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 60/115 (52%), Gaps = 6/115 (5%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
K R RV +E++ + +IL E +D + + ++S V MS DL A V+++ D
Sbjct: 3 KEFGRPQRVAQEMQKEI-ALILQREIKDPRVGM-MTTVSGVEMSRDLAYAKVFVTFLNDQ 60
Query: 67 SPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
V I AL FIR +G+++R LR VPEL F YD SL +++ L+
Sbjct: 61 DEAAVKNGIKALQEASGFIRSLLGKAMR-LRIVPELTFFYDNSLVEGMRMSNLVT 114
>gi|212639519|ref|YP_002316039.1| ribosome-binding factor A [Anoxybacillus flavithermus WK1]
gi|212560999|gb|ACJ34054.1| Ribosome-binding factor A [Anoxybacillus flavithermus WK1]
Length = 127
Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 60/110 (54%), Gaps = 5/110 (4%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
S RA RVGE+++ L +I + +D I +++++V ++ DL+ A VYIS+ D
Sbjct: 10 SLRATRVGEQMKKELSDII-GRKLKDPRIG--FVTVTDVRVTGDLQQAKVYISVLGDEEQ 66
Query: 69 DR-VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ + L FIR IG+ +R LR PE+ F D ++ ++ +L+
Sbjct: 67 KKNTLKGLAKATGFIRSEIGQRIR-LRKTPEIYFEIDETIDYGQRIESLI 115
>gi|261342613|ref|ZP_05970471.1| ribosome-binding factor A [Enterobacter cancerogenus ATCC 35316]
gi|296104881|ref|YP_003615027.1| ribosome-binding factor A [Enterobacter cloacae subsp. cloacae ATCC
13047]
gi|288315260|gb|EFC54198.1| ribosome-binding factor A [Enterobacter cancerogenus ATCC 35316]
gi|295059340|gb|ADF64078.1| ribosome-binding factor A [Enterobacter cloacae subsp. cloacae ATCC
13047]
Length = 134
Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 60/115 (52%), Gaps = 6/115 (5%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
K R RV +E++ + +IL E +D + + ++S V MS DL A V+++ D
Sbjct: 3 KEFGRPQRVAQEMQKEI-ALILQREIKDPRVGM-MTTVSGVEMSRDLAYAKVFVTFLNDQ 60
Query: 67 SPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
V I AL FIR +G+++R LR VPEL F YD SL +++ L+
Sbjct: 61 DEAAVKNGIKALQEASGFIRSLLGKAMR-LRIVPELTFFYDNSLVEGMRMSNLVT 114
>gi|329956560|ref|ZP_08297157.1| ribosome-binding factor A [Bacteroides clarus YIT 12056]
gi|328524457|gb|EGF51527.1| ribosome-binding factor A [Bacteroides clarus YIT 12056]
Length = 112
Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 41 VISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRN-LRYVPEL 99
+IS+S V +S D+ VA Y+S+ + +I +N N+K IR +G +R+ LR +PEL
Sbjct: 32 LISVSAVRISPDMSVARAYLSVFPSEKSEEIIKNVNANMKSIRFELGTRVRHQLRIIPEL 91
Query: 100 RFRYDTSLQSYWKLNALM 117
+F D SL +++ L+
Sbjct: 92 KFFVDDSLDYLERIDELL 109
>gi|157964520|ref|YP_001499344.1| ribosome-binding factor A [Rickettsia massiliae MTU5]
gi|157844296|gb|ABV84797.1| Ribosome-binding factor A [Rickettsia massiliae MTU5]
Length = 117
Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 62/119 (52%), Gaps = 4/119 (3%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
MK NS R ++ + AL+ ++ + D + ++I++V ++ DL++A Y
Sbjct: 1 MKKLTKTNSHRQQKLASIINEALIEILRRGKMLDSRLFDCPLTITKVIVTADLKIANCYF 60
Query: 61 SLPLD--VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
LP + ++ D ++ ALN + IR I + N+++ P++RF YD + K+ L+
Sbjct: 61 -LPFNTKLTIDEIMDALNNSKNAIRNFITNKI-NMKFSPDIRFHYDYGFDNAIKVAHLL 117
>gi|261867881|ref|YP_003255803.1| ribosome-binding factor A [Aggregatibacter actinomycetemcomitans
D11S-1]
gi|261413213|gb|ACX82584.1| ribosome-binding factor A [Aggregatibacter actinomycetemcomitans
D11S-1]
Length = 128
Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 62/112 (55%), Gaps = 7/112 (6%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPD 69
+R+ RV +E++ + VIL E +D I ++++S+V +S DL A V+++ D
Sbjct: 6 KRSDRVAQEIQKEIA-VILQREVKDPRIG--MVTVSDVDVSSDLAYAKVFVTFLFDHDEQ 62
Query: 70 RV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ + L +IR +G+++R L VPE+RF YD SL +++ L+
Sbjct: 63 AIAQGMKGLEKAAPYIRTLLGKAMR-LWIVPEIRFIYDQSLVEGMRMSNLVT 113
>gi|222151110|ref|YP_002560264.1| ribosome-binding factor A [Macrococcus caseolyticus JCSC5402]
gi|254789755|sp|B9EBF7|RBFA_MACCJ RecName: Full=Ribosome-binding factor A
gi|222120233|dbj|BAH17568.1| ribosome-binding factor A [Macrococcus caseolyticus JCSC5402]
Length = 114
Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 64/111 (57%), Gaps = 5/111 (4%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVS 67
S R+ RVGE+++ + +I N + ++ + ++++EV ++ DL +A+VY++ L +
Sbjct: 2 SLRSERVGEQLKKEISEII-NQKLKNPNVG--FVTVTEVEVTGDLSLASVYVTVLGEEKE 58
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ + L + FI+ I + +LR VP+L+F+YD S+ K+ ++
Sbjct: 59 RKKSLEGLEKSKGFIKSEIAHRM-DLRIVPDLKFKYDESIDYGNKIERMIA 108
>gi|138894785|ref|YP_001125238.1| ribosome-binding factor A [Geobacillus thermodenitrificans NG80-2]
gi|196247591|ref|ZP_03146293.1| ribosome-binding factor A [Geobacillus sp. G11MC16]
gi|166218441|sp|A4IMD9|RBFA_GEOTN RecName: Full=Ribosome-binding factor A
gi|134266298|gb|ABO66493.1| Ribosome-binding factor A [Geobacillus thermodenitrificans NG80-2]
gi|196212375|gb|EDY07132.1| ribosome-binding factor A [Geobacillus sp. G11MC16]
Length = 128
Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 59/108 (54%), Gaps = 5/108 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
RA RVGE+++ L +I + +D I +++++V ++ DL+ A VYIS D +
Sbjct: 4 RATRVGEQMKKELSDII-GRKLKDPRIG--FVTVTDVRVTGDLQQAKVYISVFGDDEQRE 60
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ AL FIR IG+ +R LR PE+ F D +++ ++ L+
Sbjct: 61 NTLKALEKAKGFIRSEIGQRIR-LRKTPEILFEIDETIEYGSRIERLI 107
>gi|50365189|ref|YP_053614.1| ribosome-binding factor A [Mesoplasma florum L1]
gi|50363745|gb|AAT75730.1| ribosome-binding factor A [Mesoplasma florum L1]
Length = 116
Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 50/82 (60%), Gaps = 7/82 (8%)
Query: 34 DRLISRDVI---SISEVCMSVDLRVATVYIS-LPL--DVSPDRVISALNCNIKFIRGRIG 87
+R + DV+ SI+EV ++ D +A +Y S LPL +++ + + S L N K IR ++
Sbjct: 23 EREMKNDVLRALSIAEVRLTNDSEIAKIYWSFLPLNKEITKELIASELEENKKTIRMKLA 82
Query: 88 RSLRNLRYVPELRFRYDTSLQS 109
L N R VP+L F YDTSL++
Sbjct: 83 HKL-NTRTVPDLFFEYDTSLEN 103
>gi|291532982|emb|CBL06095.1| ribosome-binding factor A [Megamonas hypermegale ART12/1]
Length = 118
Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 45/78 (57%), Gaps = 2/78 (2%)
Query: 42 ISISEVCMSVDLRVATVYIS-LPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELR 100
++I+EV +S DL A +Y+S L D + LN ++ FIR + +R L+++PE++
Sbjct: 33 VTITEVDVSSDLHNAKLYVSILGSDKQIEDTWKGLNSSLGFIRRELAHRIR-LKFIPEIK 91
Query: 101 FRYDTSLQSYWKLNALMC 118
F DTSLQ + L+
Sbjct: 92 FFMDTSLQYSAHIQELLI 109
>gi|224367582|ref|YP_002601745.1| RbfA [Desulfobacterium autotrophicum HRM2]
gi|259551968|sp|C0QHM3|RBFA_DESAH RecName: Full=Ribosome-binding factor A
gi|223690298|gb|ACN13581.1| RbfA [Desulfobacterium autotrophicum HRM2]
Length = 119
Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 60/113 (53%), Gaps = 9/113 (7%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
P++ R A R+ E ++ ++ + QD I ++++IS V ++ DLR+A VY S+ D
Sbjct: 5 PRSERVAARIQE-----ILSDLIKKKVQDPRI--ELVTISSVRLTSDLRIAYVYFSVFGD 57
Query: 66 VS-PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ + L + FI+ + L LRY+PEL+F +D S ++ L+
Sbjct: 58 EARVEEATQGLKSSHGFIKRHVASQL-GLRYMPELKFIHDQSFDRGTHMDQLL 109
>gi|146298830|ref|YP_001193421.1| ribosome-binding factor A [Flavobacterium johnsoniae UW101]
gi|189039541|sp|A5FL10|RBFA_FLAJO RecName: Full=Ribosome-binding factor A
gi|146153248|gb|ABQ04102.1| ribosome-binding factor A [Flavobacterium johnsoniae UW101]
Length = 130
Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 59/117 (50%), Gaps = 2/117 (1%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
+ R ++G ++ L+ IL E + +S VIS+S+V ++ DL VATVY+S+
Sbjct: 3 TNRQKKIGSVIQKDLVD-ILQGEVRKNGVSNLVISVSKVSVTSDLSVATVYLSIFPQEKA 61
Query: 69 DRVISALNCNIKFIRGRIGRSLR-NLRYVPELRFRYDTSLQSYWKLNALMCLPKIPV 124
+ + N I+ + + +R LR VP L F D SL K++ + + P+
Sbjct: 62 KETLEGIKSNTTLIKHDLSQRVRLQLRRVPNLVFFIDDSLDYIEKIDNALAGKENPI 118
>gi|159902668|ref|YP_001550012.1| ribosome-binding factor A [Prochlorococcus marinus str. MIT 9211]
gi|238687122|sp|A9BCX0|RBFA_PROM4 RecName: Full=Ribosome-binding factor A
gi|159887844|gb|ABX08058.1| Ribosome-binding factor A [Prochlorococcus marinus str. MIT 9211]
Length = 130
Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 56/102 (54%), Gaps = 3/102 (2%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDV 66
+ RR +V +R + ++L+ +D ++ +++I+EV +S DL+ +++S+ D
Sbjct: 3 HGRRVEKVSALIRKEMSQLLLDG-IRDERVASSMVTITEVEVSGDLQHCKIFVSIFGQDP 61
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
+ S L F+RG +GR L+ +R PE+ F+ D ++
Sbjct: 62 KREEAFSGLQAASGFLRGELGRRLQ-MRRAPEIVFKLDKGME 102
>gi|325268521|ref|ZP_08135151.1| ribosome-binding factor A [Prevotella multiformis DSM 16608]
gi|324989049|gb|EGC21002.1| ribosome-binding factor A [Prevotella multiformis DSM 16608]
Length = 111
Score = 47.8 bits (112), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 33 QDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRN 92
Q R++ ++S++ V +S DL + T Y+S+ + ++ +N N K +R +G+ + N
Sbjct: 24 QTRMMHGVLVSVTRVKISPDLSICTAYLSIFPSEKGEELLKNINANEKTVRYELGQRVHN 83
Query: 93 -LRYVPELRFRYDTSLQSYWKLNALM 117
LR +PELRF D SL +++ L+
Sbjct: 84 QLRIIPELRFFIDDSLDYLDRIDELL 109
>gi|332519405|ref|ZP_08395872.1| ribosome-binding factor A [Lacinutrix algicola 5H-3-7-4]
gi|332045253|gb|EGI81446.1| ribosome-binding factor A [Lacinutrix algicola 5H-3-7-4]
Length = 133
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 41 VISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRN-LRYVPEL 99
+IS+S+V ++VDL VA VY+S+ + ++ + N FIR + + +N LR +P+L
Sbjct: 37 IISVSKVSVTVDLSVAKVYLSIFPNDKAKELVEGIKSNQPFIRHELAKRTKNQLRRMPQL 96
Query: 100 RFRYDTSLQSYWKL 113
F D SL+ K+
Sbjct: 97 YFFVDDSLEHIDKI 110
>gi|218246068|ref|YP_002371439.1| ribosome-binding factor A [Cyanothece sp. PCC 8801]
gi|257059118|ref|YP_003137006.1| ribosome-binding factor A [Cyanothece sp. PCC 8802]
gi|226736642|sp|B7K2E7|RBFA_CYAP8 RecName: Full=Ribosome-binding factor A
gi|218166546|gb|ACK65283.1| ribosome-binding factor A [Cyanothece sp. PCC 8801]
gi|256589284|gb|ACV00171.1| ribosome-binding factor A [Cyanothece sp. PCC 8802]
Length = 128
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 58/102 (56%), Gaps = 3/102 (2%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDV 66
NSRR RV ++ + ++L++ DR + ++S++EV +S DL+ AT+++S+ +
Sbjct: 3 NSRRVSRVSSLIKREVSQMLLHDIKDDR-VGAGMVSVTEVDVSGDLQHATIFVSIYGSEQ 61
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
+ + L + F+R + +R LR PE+ FR D SL+
Sbjct: 62 AQAETMEGLKSSTSFVRRELSHRMR-LRRSPEVVFRQDHSLE 102
>gi|206900907|ref|YP_002250934.1| ribosome-binding factor A [Dictyoglomus thermophilum H-6-12]
gi|226723598|sp|B5YEH6|RBFA_DICT6 RecName: Full=Ribosome-binding factor A
gi|206740010|gb|ACI19068.1| ribosome-binding factor A [Dictyoglomus thermophilum H-6-12]
Length = 120
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 44 ISEVCMSVDLRVATVYISL-PLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFR 102
I+EV MS DLR A +Y+S+ + + + L FIR +G+ LR +R+VPE+ F
Sbjct: 35 ITEVKMSKDLRYAHIYVSVYGSEEEKKQTMQGLESAKGFIRSELGKDLR-IRFVPEIFFE 93
Query: 103 YDTSLQ 108
D SL+
Sbjct: 94 LDDSLE 99
>gi|294674933|ref|YP_003575549.1| ribosome-binding factor A [Prevotella ruminicola 23]
gi|294472925|gb|ADE82314.1| ribosome-binding factor A [Prevotella ruminicola 23]
Length = 111
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 33 QDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRN 92
Q R +IS++ +S DL + T Y+S+ + +++ +N N K IR +G +RN
Sbjct: 24 QTRATHGVMISVTRTKISPDLSICTAYLSVFPSEKGEEILTNINANTKQIRYELGTRVRN 83
Query: 93 -LRYVPELRFRYDTSLQSYWKLNALM 117
+R +PELRF D SL ++ L+
Sbjct: 84 QMRIIPELRFFIDDSLDYIEHIDELL 109
>gi|319900773|ref|YP_004160501.1| ribosome-binding factor A [Bacteroides helcogenes P 36-108]
gi|319415804|gb|ADV42915.1| ribosome-binding factor A [Bacteroides helcogenes P 36-108]
Length = 110
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 41 VISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRN-LRYVPEL 99
++S+S V +S D+ VA Y+S+ + +I +N N+K +R +G +R+ LR +PEL
Sbjct: 32 LVSVSAVRISPDMSVARAYLSIFPSEKGEEMIKNINANMKSVRYELGTRVRHQLRIIPEL 91
Query: 100 RFRYDTSLQSYWKLNALM 117
+F D SL K++ L+
Sbjct: 92 KFFVDDSLDYLEKIDELL 109
>gi|297584083|ref|YP_003699863.1| ribosome-binding factor A [Bacillus selenitireducens MLS10]
gi|297142540|gb|ADH99297.1| ribosome-binding factor A [Bacillus selenitireducens MLS10]
Length = 115
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 62/108 (57%), Gaps = 5/108 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP-D 69
RA RVGE+++ L +I +D I ++++ V ++ DL+ AT ++++ D +
Sbjct: 5 RANRVGEQIKKELTDIIQRG-IKDPRIG--FVTVTAVDVTGDLQQATAFVTVYGDDDERE 61
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ + AL +IR IG+ ++ LR PEL F++D S++ +++ L+
Sbjct: 62 KSLLALEKANGYIRSEIGKRIK-LRKTPELDFKFDESIERGNRIDELL 108
>gi|283850799|ref|ZP_06368085.1| ribosome-binding factor A [Desulfovibrio sp. FW1012B]
gi|283573722|gb|EFC21696.1| ribosome-binding factor A [Desulfovibrio sp. FW1012B]
Length = 111
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 63/108 (58%), Gaps = 10/108 (9%)
Query: 4 KNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP 63
K P+ SRR+ ++ +++ + +L + RL ++++IS V ++ D+ +A VY +L
Sbjct: 2 KRPE-SRRSTKLADQIAREMATALLEDVQDPRL---ELVTISGVALNADMSIARVYYTLS 57
Query: 64 LDVSPDRVISA---LNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
D + R+ +A L F+R +G+ LR +++VPELRF DT L+
Sbjct: 58 GDEA--RMAAAAKGLEQAKGFLRTLLGQRLR-MKFVPELRFARDTYLE 102
>gi|254302275|ref|ZP_04969633.1| ribosome binding factor A [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
gi|148322467|gb|EDK87717.1| ribosome binding factor A [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
Length = 123
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 63/115 (54%), Gaps = 10/115 (8%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL--PLD-- 65
+R +G+E+ + V+L ++ + ++S++EV ++ DL+ A Y S+ PL+
Sbjct: 7 QRLEGIGKEIMRVISKVLLEEVKNPKI--KGLVSVTEVDVTEDLKFADTYFSILPPLNSD 64
Query: 66 ---VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ ++ ALN F+R R+ + ++RY PE+R + D S+++ K+ L+
Sbjct: 65 EKQYDHEEILEALNEIKGFLRKRVAEEV-DIRYTPEIRVKLDNSMENAMKITKLL 118
>gi|282859948|ref|ZP_06269036.1| ribosome-binding factor A [Prevotella bivia JCVIHMP010]
gi|282587351|gb|EFB92568.1| ribosome-binding factor A [Prevotella bivia JCVIHMP010]
Length = 111
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 33 QDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRN 92
Q R++ ++S++ V +S DL + T Y+S+ + +++ +N N K IR +G+ N
Sbjct: 24 QTRMLHGVLVSVTRVKVSPDLSICTAYLSIFPSDKAEELLNNINANDKTIRYELGQRTHN 83
Query: 93 -LRYVPELRFRYDTSLQSYWKLNALM 117
LR +PELRF D SL +++ L+
Sbjct: 84 QLRIIPELRFFIDDSLDYLDRIDHLL 109
>gi|254519183|ref|ZP_05131239.1| ribosome-binding factor A [Clostridium sp. 7_2_43FAA]
gi|226912932|gb|EEH98133.1| ribosome-binding factor A [Clostridium sp. 7_2_43FAA]
Length = 116
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 62/114 (54%), Gaps = 7/114 (6%)
Query: 11 RALRVGEEVRSALMWVILNNEFQD-RLISRDVISISEVCMSVDLRVATVYISL--PLDVS 67
R R+ EEVR + VI+ +E +D R+ + ++SI+ V ++ DLR A V++S+ +
Sbjct: 5 RGGRINEEVRREI-SVIIRDEIKDPRMTA--MVSITAVKVTKDLRYAKVFVSIFGKNEDE 61
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+ +AL +IR IG+ + NLR P++ F D S+ K+ L+ K
Sbjct: 62 KNETFAALKSASGYIRKEIGQRI-NLRNTPQILFELDDSISYSMKIEELIEKAK 114
>gi|86157531|ref|YP_464316.1| ribosome-binding factor A [Anaeromyxobacter dehalogenans 2CP-C]
gi|123499936|sp|Q2IPZ5|RBFA_ANADE RecName: Full=Ribosome-binding factor A
gi|85774042|gb|ABC80879.1| ribosome-binding factor A [Anaeromyxobacter dehalogenans 2CP-C]
Length = 138
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 56/109 (51%), Gaps = 6/109 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD--VSP 68
R RV EE R L +L +D I+ ++++ MS DL+ ATVY+S+ D V
Sbjct: 6 RPARVAEEFRHEL-SALLARGLKDPRIT-GFVTVTGSKMSPDLKEATVYVSIHGDERVRK 63
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
D + L F++ + R+LR LR P LRF YD S+ ++ L+
Sbjct: 64 D-TFAGLQAAAGFLQREVSRALR-LRNTPHLRFVYDESVARGDRIERLL 110
>gi|123440814|ref|YP_001004805.1| ribosome-binding factor A [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|166199574|sp|A1JIX0|RBFA_YERE8 RecName: Full=Ribosome-binding factor A
gi|122087775|emb|CAL10561.1| ribosome-binding factor A [Yersinia enterocolitica subsp.
enterocolitica 8081]
Length = 136
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 64/119 (53%), Gaps = 11/119 (9%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS----L 62
K R+ RV +E++ + +IL E +D + + ++S + +S DL A V+++ L
Sbjct: 3 KEFSRSQRVSQEMQKEI-ALILQREIKDPRVG--MATVSGIELSRDLAYAKVFVTFLNVL 59
Query: 63 PLDVSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ PD V I AL +IR +G+++R LR VPEL F YD SL +++ L+
Sbjct: 60 TDNADPDTVKNGIKALQDASGYIRTLLGKAMR-LRIVPELTFAYDNSLIEGMRMSNLVT 117
>gi|258516330|ref|YP_003192552.1| ribosome-binding factor A [Desulfotomaculum acetoxidans DSM 771]
gi|257780035|gb|ACV63929.1| ribosome-binding factor A [Desulfotomaculum acetoxidans DSM 771]
Length = 119
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 58/110 (52%), Gaps = 5/110 (4%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVS 67
+ R R+ E ++ + +I+N E +D I SI+ V +S DL A +++S L +
Sbjct: 2 AHRPERLAESIKKEVSDMIIN-ELKDPRIG--FTSITSVEVSRDLSFAKIFVSVLGTEEE 58
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ AL+ FIR IGR +R LR+VPEL F D S+ K+ L+
Sbjct: 59 QKATVEALSRANGFIRAEIGRRIR-LRHVPELAFISDQSIAHGTKIMKLL 107
>gi|167627173|ref|YP_001677673.1| ribosome-binding factor A [Francisella philomiragia subsp.
philomiragia ATCC 25017]
gi|189039542|sp|B0TWR4|RBFA_FRAP2 RecName: Full=Ribosome-binding factor A
gi|167597174|gb|ABZ87172.1| ribosome-binding factor A [Francisella philomiragia subsp.
philomiragia ATCC 25017]
Length = 143
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 62/118 (52%), Gaps = 11/118 (9%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
R RV E++ ++ ++L + +D ++ +I+EV +S DL A VY + LD+ +
Sbjct: 6 RVQRVASELQK-VISLLLRTKIKDSKLA--TATITEVELSKDLSYAKVYYTC-LDIQEAQ 61
Query: 71 VIS-ALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALE 127
IS A + F R I +SL NLR VP L+F YD SL ++ KI ALE
Sbjct: 62 YISKAFEKSKGFFRSSIAKSL-NLRIVPNLKFVYDKSLDYGMEMEG-----KIQQALE 113
>gi|149375754|ref|ZP_01893522.1| ribosome-binding factor A [Marinobacter algicola DG893]
gi|149359879|gb|EDM48335.1| ribosome-binding factor A [Marinobacter algicola DG893]
Length = 145
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 65/119 (54%), Gaps = 11/119 (9%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
P+ R R+G++++ L +I E +D + +++++ V +S DL A VY+SL
Sbjct: 2 PREFSRIDRIGDQMQRELAQLI-QREVKDPRVG--MVTVNAVKVSRDLGYADVYVSLLTT 58
Query: 66 V-----SPD--RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
SP ++ LN F++G++GR+++ LR P+LRF +DT L ++ L+
Sbjct: 59 EELTEESPQVRDSLTVLNKAAGFLKGQVGRAMK-LRVTPQLRFHFDTLLGHSRHMDNLI 116
>gi|300718576|ref|YP_003743379.1| ribosome-binding factor A [Erwinia billingiae Eb661]
gi|299064412|emb|CAX61532.1| Ribosome-binding factor A [Erwinia billingiae Eb661]
Length = 138
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 62/115 (53%), Gaps = 6/115 (5%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
K R RV +E++ + VIL E +D + ++++S V +S DL A V+++ D
Sbjct: 3 KEFGRPQRVSQELQKEI-AVILQREIKDPRLGM-MVTVSGVDLSRDLAYAKVFVTFLNDK 60
Query: 67 SPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
D + + AL +IR +G+++R LR VPEL F YD SL +++ L+
Sbjct: 61 DEDAIKGGLRALGDASGYIRSLLGKAMR-LRIVPELTFFYDNSLVEGMRMSNLVT 114
>gi|39996689|ref|NP_952640.1| ribosome-binding factor A [Geobacter sulfurreducens PCA]
gi|61215118|sp|Q74CT2|RBFA_GEOSL RecName: Full=Ribosome-binding factor A
gi|39983570|gb|AAR34963.1| ribosome-binding factor A [Geobacter sulfurreducens PCA]
gi|298505700|gb|ADI84423.1| ribosome-binding factor A [Geobacter sulfurreducens KN400]
Length = 118
Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 48/78 (61%), Gaps = 4/78 (5%)
Query: 42 ISISEVCMSVDLRVATVYISLPLDVSPDRVISA--LNCNIKFIRGRIGRSLRNLRYVPEL 99
I+I+ V ++ D+R AT+Y ++ D RV +A L F+R IG+ LR L++ PEL
Sbjct: 32 ITITGVKVTDDIRQATIYYTVMGD-DEARVSTARGLASATGFLRREIGKQLR-LKFAPEL 89
Query: 100 RFRYDTSLQSYWKLNALM 117
F+YD S++ +++ L+
Sbjct: 90 HFKYDQSIEYGNRIDQLL 107
>gi|167763867|ref|ZP_02435994.1| hypothetical protein BACSTE_02248 [Bacteroides stercoris ATCC
43183]
gi|167697983|gb|EDS14562.1| hypothetical protein BACSTE_02248 [Bacteroides stercoris ATCC
43183]
Length = 110
Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 41 VISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRN-LRYVPEL 99
+IS+S V +S D+ VA Y+S+ + +I +N N+K IR +G +R+ LR +PEL
Sbjct: 32 LISVSAVRISPDMSVARAYLSVFPSERSEEIIKNVNANMKSIRFELGTRVRHQLRIIPEL 91
Query: 100 RFRYDTSLQSYWKLNALM 117
+F D SL +++ L+
Sbjct: 92 KFFVDDSLDYLERIDELL 109
>gi|160891600|ref|ZP_02072603.1| hypothetical protein BACUNI_04053 [Bacteroides uniformis ATCC 8492]
gi|156859007|gb|EDO52438.1| hypothetical protein BACUNI_04053 [Bacteroides uniformis ATCC 8492]
Length = 113
Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 41 VISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRN-LRYVPEL 99
+IS+S V +S D+ VA Y+S+ + ++ +N N+K IR +G +R+ LR +PEL
Sbjct: 35 LISVSAVRISPDMSVARAYLSIFPSEKSEEIVKNINGNMKSIRFELGTRVRHQLRIIPEL 94
Query: 100 RFRYDTSLQSYWKLNALM 117
+F D SL +++ L+
Sbjct: 95 KFFVDDSLDYLERIDELL 112
>gi|157368737|ref|YP_001476726.1| ribosome-binding factor A [Serratia proteamaculans 568]
gi|166918678|sp|A8G908|RBFA_SERP5 RecName: Full=Ribosome-binding factor A
gi|157320501|gb|ABV39598.1| ribosome-binding factor A [Serratia proteamaculans 568]
Length = 136
Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 63/119 (52%), Gaps = 11/119 (9%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS----L 62
K R RV +E++ + +IL E +D + + ++S V +S DL A VY++ L
Sbjct: 3 KEFSRGQRVAQEMQKEI-AIILQREVKDPRVG--MATVSGVEVSRDLAYAKVYVTFLNVL 59
Query: 63 PLDVSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ P+ V I AL +IR +G+++R LR VPEL F YD SL +++ L+
Sbjct: 60 TENADPNLVPNGIKALEDASGYIRTLLGKAMR-LRVVPELTFAYDNSLVEGMRMSNLVT 117
>gi|78183922|ref|YP_376357.1| ribosome-binding factor A [Synechococcus sp. CC9902]
gi|123582140|sp|Q3B014|RBFA_SYNS9 RecName: Full=Ribosome-binding factor A
gi|78168216|gb|ABB25313.1| ribosome-binding factor A [Synechococcus sp. CC9902]
Length = 134
Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 59/113 (52%), Gaps = 7/113 (6%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL---PL 64
RR RV +R +++N +D + + ++SI+ V ++ DL+ +++S+ P
Sbjct: 3 QGRRVERVAALIRKETSELLING-IRDERVHKGMVSITSVEVAGDLQHCKIFVSIFGEPN 61
Query: 65 DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
D + V+ L F+RG +GR L+ +R PE++F+ D L+ + L+
Sbjct: 62 D--QNEVMEGLEAASGFLRGELGRRLQ-MRRAPEVKFQLDRGLEKGTSVLGLL 111
>gi|226946306|ref|YP_002801379.1| ribosome-binding factor A [Azotobacter vinelandii DJ]
gi|259551948|sp|C1DFK8|RBFA_AZOVD RecName: Full=Ribosome-binding factor A
gi|226721233|gb|ACO80404.1| ribosome-binding factor A [Azotobacter vinelandii DJ]
Length = 129
Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 70/117 (59%), Gaps = 10/117 (8%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQD-RLISRDVISISEVCMSVDLRVATVYIS-LP 63
K+ R R+G++++ L ++I E +D RL +I+++ V ++ DL A V+I+ +
Sbjct: 2 AKDYSRTQRIGDQMQRELSFLI-QREIKDPRL---GMITVTAVEVARDLSHAKVFITVMG 57
Query: 64 LDVSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ S D + + L+ F+R ++G+S++ LR VP+L F YD S++ +L+AL+
Sbjct: 58 KEDSADEIERNLEILHEAAGFLRMQLGKSMK-LRSVPQLHFSYDASVRRGVELSALI 113
>gi|226529836|ref|NP_001149358.1| LOC100282982 [Zea mays]
gi|195626630|gb|ACG35145.1| ribosome-binding factor A [Zea mays]
Length = 206
Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 52/85 (61%), Gaps = 3/85 (3%)
Query: 34 DRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRV-ISALNCNIKFIRGRIGRSLRN 92
DR +S + +I++V +S DL+V VY+S+ D +V I L K++R +IGR ++
Sbjct: 79 DRYLSS-LTTIADVELSNDLQVCKVYVSVFGDERGKKVAIEGLKAKTKYVRSQIGRRMK- 136
Query: 93 LRYVPELRFRYDTSLQSYWKLNALM 117
LR PE+RF D S++ ++ A++
Sbjct: 137 LRLTPEIRFIEDESMERGSRILAIL 161
>gi|326794271|ref|YP_004312091.1| ribosome-binding factor A [Marinomonas mediterranea MMB-1]
gi|326545035|gb|ADZ90255.1| Ribosome-binding factor A [Marinomonas mediterranea MMB-1]
Length = 128
Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 64/111 (57%), Gaps = 8/111 (7%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
R R+G++++ L +I +F+ + ++I+EV ++ DL A VY + L +D P
Sbjct: 7 RTSRIGDQLQKELASLI---QFEVKDPRLGFVTINEVRVAKDLGYADVYYTVLGIDEDPK 63
Query: 70 RVIS---ALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
++ AL+ F+R R+ + ++ LR +P LRF YD S+ + +++AL+
Sbjct: 64 KLADNQVALDSAKSFLRHRLSKEVK-LRVMPHLRFHYDQSVVNGARMSALI 113
>gi|56460075|ref|YP_155356.1| ribosome-binding factor A [Idiomarina loihiensis L2TR]
gi|61214736|sp|Q5QTY9|RBFA_IDILO RecName: Full=Ribosome-binding factor A
gi|56179085|gb|AAV81807.1| Ribosome-binding factor A [Idiomarina loihiensis L2TR]
Length = 128
Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 60/108 (55%), Gaps = 10/108 (9%)
Query: 17 EEVRSAL---MWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVIS 73
E VR L + +IL E +D +S ++++S+V +S DL A V+++ D P++
Sbjct: 9 ERVRHQLQREIAMILQREIKDPRVS--MVTVSDVEVSRDLAYAKVFVTFFQD-DPEQTKQ 65
Query: 74 AL---NCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
AL N FIR +G+ ++ R VP+LRF++D SL ++ L+
Sbjct: 66 ALKVLNEASGFIRSLLGKRIK-ARIVPQLRFQHDASLNEGIRMGKLVA 112
>gi|51594833|ref|YP_069024.1| ribosome-binding factor A [Yersinia pseudotuberculosis IP 32953]
gi|108806043|ref|YP_649959.1| ribosome-binding factor A [Yersinia pestis Antiqua]
gi|108813399|ref|YP_649166.1| ribosome-binding factor A [Yersinia pestis Nepal516]
gi|145600791|ref|YP_001164867.1| ribosome-binding factor A [Yersinia pestis Pestoides F]
gi|153946906|ref|YP_001402549.1| ribosome-binding factor A [Yersinia pseudotuberculosis IP 31758]
gi|153997272|ref|ZP_02022372.1| ribosome-binding factor A [Yersinia pestis CA88-4125]
gi|161484875|ref|NP_668026.2| ribosome-binding factor A [Yersinia pestis KIM 10]
gi|161511439|ref|NP_991981.2| ribosome-binding factor A [Yersinia pestis biovar Microtus str.
91001]
gi|162419142|ref|YP_001608287.1| ribosome-binding factor A [Yersinia pestis Angola]
gi|165925682|ref|ZP_02221514.1| ribosome-binding factor A [Yersinia pestis biovar Orientalis str.
F1991016]
gi|165936784|ref|ZP_02225351.1| ribosome-binding factor A [Yersinia pestis biovar Orientalis str.
IP275]
gi|166010165|ref|ZP_02231063.1| ribosome-binding factor A [Yersinia pestis biovar Antiqua str.
E1979001]
gi|166214622|ref|ZP_02240657.1| ribosome-binding factor A [Yersinia pestis biovar Antiqua str.
B42003004]
gi|167401225|ref|ZP_02306725.1| ribosome-binding factor A [Yersinia pestis biovar Antiqua str.
UG05-0454]
gi|167420727|ref|ZP_02312480.1| ribosome-binding factor A [Yersinia pestis biovar Orientalis str.
MG05-1020]
gi|167423323|ref|ZP_02315076.1| ribosome-binding factor A [Yersinia pestis biovar Mediaevalis str.
K1973002]
gi|167470845|ref|ZP_02335549.1| ribosome-binding factor A [Yersinia pestis FV-1]
gi|170025944|ref|YP_001722449.1| ribosome-binding factor A [Yersinia pseudotuberculosis YPIII]
gi|186893842|ref|YP_001870954.1| ribosome-binding factor A [Yersinia pseudotuberculosis PB1/+]
gi|218930509|ref|YP_002348384.1| ribosome-binding factor A [Yersinia pestis CO92]
gi|229839147|ref|ZP_04459306.1| 30s ribosome binding factor [Yersinia pestis biovar Orientalis str.
PEXU2]
gi|229896636|ref|ZP_04511803.1| 30s ribosome binding factor [Yersinia pestis Pestoides A]
gi|229899711|ref|ZP_04514852.1| 30s ribosome binding factor [Yersinia pestis biovar Orientalis str.
India 195]
gi|229903873|ref|ZP_04518986.1| 30s ribosome binding factor [Yersinia pestis Nepal516]
gi|270489137|ref|ZP_06206211.1| ribosome-binding factor A [Yersinia pestis KIM D27]
gi|294505372|ref|YP_003569434.1| ribosome-binding factor A [Yersinia pestis Z176003]
gi|20978601|sp|Q8ZBC3|RBFA_YERPE RecName: Full=Ribosome-binding factor A
gi|61214873|sp|Q66F59|RBFA_YERPS RecName: Full=Ribosome-binding factor A
gi|122383880|sp|Q1CC08|RBFA_YERPA RecName: Full=Ribosome-binding factor A
gi|122384217|sp|Q1CEL4|RBFA_YERPN RecName: Full=Ribosome-binding factor A
gi|166199575|sp|A4TRI2|RBFA_YERPP RecName: Full=Ribosome-binding factor A
gi|166918680|sp|A7FMS1|RBFA_YERP3 RecName: Full=Ribosome-binding factor A
gi|226723614|sp|A9R5A4|RBFA_YERPG RecName: Full=Ribosome-binding factor A
gi|238688456|sp|B1JLX9|RBFA_YERPY RecName: Full=Ribosome-binding factor A
gi|238691363|sp|B2K2Q6|RBFA_YERPB RecName: Full=Ribosome-binding factor A
gi|51588115|emb|CAH19721.1| ribosome-binding factor A [Yersinia pseudotuberculosis IP 32953]
gi|108777047|gb|ABG19566.1| ribosome-binding factor A [Yersinia pestis Nepal516]
gi|108777956|gb|ABG12014.1| ribosome-binding factor A [Yersinia pestis Antiqua]
gi|115349120|emb|CAL22083.1| ribosome-binding factor A [Yersinia pestis CO92]
gi|145212487|gb|ABP41894.1| ribosome-binding factor A [Yersinia pestis Pestoides F]
gi|149288909|gb|EDM38989.1| ribosome-binding factor A [Yersinia pestis CA88-4125]
gi|152958401|gb|ABS45862.1| ribosome-binding factor A [Yersinia pseudotuberculosis IP 31758]
gi|162351957|gb|ABX85905.1| ribosome-binding factor A [Yersinia pestis Angola]
gi|165915433|gb|EDR34043.1| ribosome-binding factor A [Yersinia pestis biovar Orientalis str.
IP275]
gi|165922294|gb|EDR39471.1| ribosome-binding factor A [Yersinia pestis biovar Orientalis str.
F1991016]
gi|165991072|gb|EDR43373.1| ribosome-binding factor A [Yersinia pestis biovar Antiqua str.
E1979001]
gi|166204197|gb|EDR48677.1| ribosome-binding factor A [Yersinia pestis biovar Antiqua str.
B42003004]
gi|166961533|gb|EDR57554.1| ribosome-binding factor A [Yersinia pestis biovar Orientalis str.
MG05-1020]
gi|167049250|gb|EDR60658.1| ribosome-binding factor A [Yersinia pestis biovar Antiqua str.
UG05-0454]
gi|167057493|gb|EDR67239.1| ribosome-binding factor A [Yersinia pestis biovar Mediaevalis str.
K1973002]
gi|169752478|gb|ACA69996.1| ribosome-binding factor A [Yersinia pseudotuberculosis YPIII]
gi|186696868|gb|ACC87497.1| ribosome-binding factor A [Yersinia pseudotuberculosis PB1/+]
gi|229679643|gb|EEO75746.1| 30s ribosome binding factor [Yersinia pestis Nepal516]
gi|229687203|gb|EEO79278.1| 30s ribosome binding factor [Yersinia pestis biovar Orientalis str.
India 195]
gi|229695513|gb|EEO85560.1| 30s ribosome binding factor [Yersinia pestis biovar Orientalis str.
PEXU2]
gi|229700414|gb|EEO88446.1| 30s ribosome binding factor [Yersinia pestis Pestoides A]
gi|262363438|gb|ACY60159.1| ribosome-binding factor A [Yersinia pestis D106004]
gi|262367187|gb|ACY63744.1| ribosome-binding factor A [Yersinia pestis D182038]
gi|270337641|gb|EFA48418.1| ribosome-binding factor A [Yersinia pestis KIM D27]
gi|294355831|gb|ADE66172.1| ribosome-binding factor A [Yersinia pestis Z176003]
gi|320013698|gb|ADV97269.1| 30s ribosome binding factor [Yersinia pestis biovar Medievalis str.
Harbin 35]
Length = 136
Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 64/119 (53%), Gaps = 11/119 (9%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS----L 62
K R+ RV +E++ + +IL E +D + + ++S + +S DL A V+++ L
Sbjct: 3 KEFSRSQRVSQEMQKEI-ALILQREIKDPRVG--MATVSGIELSRDLAYAKVFVTFLNVL 59
Query: 63 PLDVSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ PD V I AL +IR +G+++R LR VPEL F YD SL +++ L+
Sbjct: 60 TDNADPDTVKNGIKALQDASGYIRTLLGKAMR-LRIVPELTFAYDNSLIEGMRMSNLVS 117
>gi|297180951|gb|ADI17154.1| ribosome-binding factor a [uncultured gamma proteobacterium
HF0070_08D07]
Length = 130
Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 60/111 (54%), Gaps = 6/111 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
R+ ++G+ R + +I N RL+ +IS++EV ++ DL A VY+S D+
Sbjct: 18 RSEKIGDLFRDEIATIIQRNLRDPRLVK--IISVNEVSVAKDLAYADVYVSSFETQDEDQ 75
Query: 71 ---VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+I +LN FIR + ++ + +R P+LRF YD + + +L +L+
Sbjct: 76 KQELILSLNGASGFIRTILSKTHK-MRSTPKLRFHYDDTYERVARLESLIA 125
>gi|270295326|ref|ZP_06201527.1| ribosome-binding factor A [Bacteroides sp. D20]
gi|317478322|ref|ZP_07937486.1| ribosome-binding factor A [Bacteroides sp. 4_1_36]
gi|270274573|gb|EFA20434.1| ribosome-binding factor A [Bacteroides sp. D20]
gi|316905481|gb|EFV27271.1| ribosome-binding factor A [Bacteroides sp. 4_1_36]
Length = 110
Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 41 VISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRN-LRYVPEL 99
+IS+S V +S D+ VA Y+S+ + ++ +N N+K IR +G +R+ LR +PEL
Sbjct: 32 LISVSAVRISPDMSVARAYLSIFPSEKSEEIVKNINGNMKSIRFELGTRVRHQLRIIPEL 91
Query: 100 RFRYDTSLQSYWKLNALM 117
+F D SL +++ L+
Sbjct: 92 KFFVDDSLDYLERIDELL 109
>gi|85058356|ref|YP_454058.1| ribosome-binding factor A [Sodalis glossinidius str. 'morsitans']
gi|123520130|sp|Q2NW22|RBFA_SODGM RecName: Full=Ribosome-binding factor A
gi|84778876|dbj|BAE73653.1| ribosome-binding factor A [Sodalis glossinidius str. 'morsitans']
Length = 138
Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 62/116 (53%), Gaps = 7/116 (6%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K R RV +E++ + +IL E +D + + ++S V +S DL A V+++ D
Sbjct: 2 AKEYSRTQRVAQEMQKEI-AIILQREIKDPRVG--MATVSGVEVSRDLAYAKVFVTFLND 58
Query: 66 VSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ ++V + AL FI +G+++R LR VPEL F YD SL +++ L+
Sbjct: 59 NTLEQVKTGVRALQDAAGFIHSLLGKAMR-LRVVPELTFAYDNSLVEGMRMSNLVS 113
>gi|311030084|ref|ZP_07708174.1| ribosome-binding factor A [Bacillus sp. m3-13]
Length = 130
Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 59/108 (54%), Gaps = 5/108 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
R+ RVGE+++ L +I + +D + +++++V ++ DL+ A V+IS L D
Sbjct: 13 RSNRVGEQMKKELSDII-GRKIKDPRVG--FVTVTDVQVTGDLQQAKVFISVLGDDEKRQ 69
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ L FIR IGR +R LR PEL F +D S+ +N+L+
Sbjct: 70 DTLIGLAKAKGFIRSEIGRRIR-LRKTPELFFEFDESIAYGNHINSLI 116
>gi|242091890|ref|XP_002436435.1| hypothetical protein SORBIDRAFT_10g002540 [Sorghum bicolor]
gi|241914658|gb|EER87802.1| hypothetical protein SORBIDRAFT_10g002540 [Sorghum bicolor]
Length = 207
Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 52/85 (61%), Gaps = 3/85 (3%)
Query: 34 DRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRV-ISALNCNIKFIRGRIGRSLRN 92
DR +S + +I++V +S DL+V VY+S+ D +V I L K++R +IG+ ++
Sbjct: 79 DRYLS-SLTTIADVELSNDLQVCKVYVSVFGDERGKKVAIEGLKAKTKYVRSQIGKRMK- 136
Query: 93 LRYVPELRFRYDTSLQSYWKLNALM 117
LR PE+RF D S++ ++ A++
Sbjct: 137 LRLTPEIRFIEDESMERGSRILAIL 161
>gi|189465192|ref|ZP_03013977.1| hypothetical protein BACINT_01537 [Bacteroides intestinalis DSM
17393]
gi|189437466|gb|EDV06451.1| hypothetical protein BACINT_01537 [Bacteroides intestinalis DSM
17393]
Length = 110
Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 41 VISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRN-LRYVPEL 99
++S+S V +S DL VA Y+S+ + +I +N N+K +R +G +R+ LR +PEL
Sbjct: 32 LVSVSAVRISPDLSVARAYLSIFPSEKAEEMIKNINENMKSVRYELGTRVRHQLRIIPEL 91
Query: 100 RFRYDTSLQSYWKLNALM 117
+F D SL K++ L+
Sbjct: 92 KFFVDDSLDYLEKIDELL 109
>gi|333029565|ref|ZP_08457626.1| ribosome-binding factor A [Bacteroides coprosuis DSM 18011]
gi|332740162|gb|EGJ70644.1| ribosome-binding factor A [Bacteroides coprosuis DSM 18011]
Length = 110
Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 41 VISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRN-LRYVPEL 99
+IS+SEV ++ DL +A Y+S+ + +I +N N K IR +G +R+ LR +PEL
Sbjct: 32 LISVSEVRVTSDLSIARAYLSIFPNDKKQELIENINANAKAIRYDLGTRVRHQLRIIPEL 91
Query: 100 RFRYDTSLQSYWKLNALM 117
F D SL +++ L+
Sbjct: 92 IFHIDDSLDYAERIDELL 109
>gi|254487255|ref|ZP_05100460.1| ribosome-binding factor A [Roseobacter sp. GAI101]
gi|214044124|gb|EEB84762.1| ribosome-binding factor A [Roseobacter sp. GAI101]
Length = 136
Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 53/94 (56%), Gaps = 3/94 (3%)
Query: 15 VGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP-DRVIS 73
+GE +R AL V+ + D ++R I++ EV S DL++AT ++ LPL D V+
Sbjct: 1 MGETIRRALSEVLARGDVHDPELNRMSITVGEVRASPDLKIATAFV-LPLGGEGRDEVLK 59
Query: 74 ALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSL 107
L N +R ++ + L L++ P+LRF+ D +
Sbjct: 60 LLARNKGELRRQLSKKL-VLKFAPDLRFQLDETF 92
>gi|197334491|ref|YP_002155242.1| ribosome-binding factor A [Vibrio fischeri MJ11]
gi|226723615|sp|B5FA80|RBFA_VIBFM RecName: Full=Ribosome-binding factor A
gi|197315981|gb|ACH65428.1| ribosome-binding factor A [Vibrio fischeri MJ11]
Length = 135
Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 64/114 (56%), Gaps = 6/114 (5%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL--PL 64
K R RV ++++ L V+L E +D I +++IS+V +S DL A V+++
Sbjct: 3 KEFSRTQRVSQQLQKEL-AVMLQREVRDSRIG--MVTISDVEVSRDLAYAKVFVTFFCVG 59
Query: 65 DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
D +P+ ++AL + +R +G+ +R LR PE+RF YD +L +++ L+
Sbjct: 60 DQTPESSLAALKEHEPSLRMMLGKRIR-LRLTPEIRFTYDNTLVEGMRMSNLVT 112
>gi|241667735|ref|ZP_04755313.1| ribosome-binding factor A [Francisella philomiragia subsp.
philomiragia ATCC 25015]
gi|254876279|ref|ZP_05248989.1| ribosome-binding factor A [Francisella philomiragia subsp.
philomiragia ATCC 25015]
gi|254842300|gb|EET20714.1| ribosome-binding factor A [Francisella philomiragia subsp.
philomiragia ATCC 25015]
Length = 143
Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 62/118 (52%), Gaps = 11/118 (9%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
R RV E++ ++ ++L + +D ++ +I+EV +S DL A VY + LD+ +
Sbjct: 6 RVQRVASELQK-VISLLLRTKIKDSKLA--TATITEVELSKDLSYAKVYYTC-LDIQEAQ 61
Query: 71 VIS-ALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALE 127
IS A + F R I +SL NLR VP L+F YD SL ++ KI ALE
Sbjct: 62 YISKAFEKSKGFFRSSIAKSL-NLRIVPNLKFIYDKSLDYGMEMEG-----KIQQALE 113
>gi|239947275|ref|ZP_04699028.1| ribosome-binding factor A [Rickettsia endosymbiont of Ixodes
scapularis]
gi|239921551|gb|EER21575.1| ribosome-binding factor A [Rickettsia endosymbiont of Ixodes
scapularis]
Length = 122
Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 62/119 (52%), Gaps = 4/119 (3%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
MK NS R ++ + AL+ ++ + D + ++I++V ++ DL++A Y
Sbjct: 1 MKKLTKTNSYRQQKLASIINEALIEILRRGKMLDSRLFDCPLTITKVIVTADLKIANCYF 60
Query: 61 SLPLD--VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
LP + ++ D ++ ALN + IR I + N+++ P++RF YD + K+ L+
Sbjct: 61 -LPFNTKLTIDEIMDALNNSKNAIRNFITNKI-NIKFSPDIRFHYDYGFDNAIKVEELL 117
>gi|295399855|ref|ZP_06809836.1| ribosome-binding factor A [Geobacillus thermoglucosidasius
C56-YS93]
gi|312111633|ref|YP_003989949.1| ribosome-binding factor A [Geobacillus sp. Y4.1MC1]
gi|294978258|gb|EFG53855.1| ribosome-binding factor A [Geobacillus thermoglucosidasius
C56-YS93]
gi|311216734|gb|ADP75338.1| ribosome-binding factor A [Geobacillus sp. Y4.1MC1]
Length = 126
Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 59/108 (54%), Gaps = 5/108 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
RA RVGE+++ L +I + +D I +++++V ++ DL+ A VYIS+ D +
Sbjct: 4 RATRVGEQMKKELSDII-GRKLKDPRIG--FVTVTDVRVTGDLQQAKVYISIFGDEEQRQ 60
Query: 71 -VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ L FIR IG+ +R LR PE+ F D S++ ++ L+
Sbjct: 61 NTLKGLEKAKGFIRSEIGQRIR-LRKTPEIFFEIDESIEYGTRIEQLI 107
>gi|290473448|ref|YP_003466315.1| ribosome-binding factor, role in processing of 10S rRNA
[Xenorhabdus bovienii SS-2004]
gi|289172748|emb|CBJ79519.1| ribosome-binding factor, role in processing of 10S rRNA
[Xenorhabdus bovienii SS-2004]
Length = 136
Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 64/116 (55%), Gaps = 13/116 (11%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV---- 66
R RV +E++ + +IL E +D I + ++S V +S DL A V+++ L+V
Sbjct: 7 RTQRVAQEMQKEI-AIILQREVKDPRIG--MATVSGVEVSRDLAYAKVFVTF-LNVLVEG 62
Query: 67 -SPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
D V I ALN FIR +G+++R LR +PEL F YD+SL +++ L+
Sbjct: 63 QDSDMVNVGIKALNEASGFIRSLLGKAMR-LRVIPELTFSYDSSLVDGMRMSNLVT 117
>gi|237743257|ref|ZP_04573738.1| ribosome-binding factor A [Fusobacterium sp. 7_1]
gi|256028612|ref|ZP_05442446.1| ribosome-binding factor A [Fusobacterium sp. D11]
gi|260495120|ref|ZP_05815249.1| ribosome-binding factor A [Fusobacterium sp. 3_1_33]
gi|289766530|ref|ZP_06525908.1| ribosome-binding factor A [Fusobacterium sp. D11]
gi|229433036|gb|EEO43248.1| ribosome-binding factor A [Fusobacterium sp. 7_1]
gi|260197563|gb|EEW95081.1| ribosome-binding factor A [Fusobacterium sp. 3_1_33]
gi|289718085|gb|EFD82097.1| ribosome-binding factor A [Fusobacterium sp. D11]
Length = 120
Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 65/115 (56%), Gaps = 10/115 (8%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL--PLDVS 67
+R +G+E+ + V+L E ++ I + ++S++EV ++ DL+ A Y S+ PL+
Sbjct: 4 QRLEGIGKEIMRVISKVLLE-EVKNPKI-KGLVSVTEVDVTEDLKFADTYFSILPPLNSD 61
Query: 68 P-----DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ ++ ALN F+R R+ + ++RY PE+R + D S+++ K+ L+
Sbjct: 62 EKQYDNEEILEALNEIKGFLRKRVAEEV-DIRYTPEIRVKLDNSMENAIKITKLL 115
>gi|21957407|gb|AAM84277.1|AE013671_4 ribosome-binding factor A [Yersinia pestis KIM 10]
gi|45435299|gb|AAS60858.1| ribosome-binding factor A [Yersinia pestis biovar Microtus str.
91001]
Length = 154
Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 59/108 (54%), Gaps = 11/108 (10%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS----L 62
K R+ RV +E++ + +IL E +D + + ++S + +S DL A V+++ L
Sbjct: 21 KEFSRSQRVSQEMQKEIA-LILQREIKDPRVG--MATVSGIELSRDLAYAKVFVTFLNVL 77
Query: 63 PLDVSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSL 107
+ PD V I AL +IR +G+++R LR VPEL F YD SL
Sbjct: 78 TDNADPDTVKNGIKALQDASGYIRTLLGKAMR-LRIVPELTFAYDNSL 124
>gi|289163638|ref|YP_003453776.1| Ribosome-binding factor A [Legionella longbeachae NSW150]
gi|288856811|emb|CBJ10622.1| Ribosome-binding factor A [Legionella longbeachae NSW150]
Length = 121
Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 58/111 (52%), Gaps = 4/111 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
N +R RV E ++ L +I RL ++IS V ++ DL A VY ++ L+
Sbjct: 3 HNFKRTDRVAEMIQRKLAQIIPKEVKDPRLTG--FVTISAVKVAADLGHAKVYFTV-LND 59
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ V S LN ++R + RS+ LR VP+L F YD S++ +L+ L+
Sbjct: 60 DREMVASILNAASSYLRSVLARSI-TLRTVPQLHFVYDESIEYGQRLSRLI 109
>gi|134299803|ref|YP_001113299.1| ribosome-binding factor A [Desulfotomaculum reducens MI-1]
gi|172044303|sp|A4J5X1|RBFA_DESRM RecName: Full=Ribosome-binding factor A
gi|134052503|gb|ABO50474.1| ribosome-binding factor A [Desulfotomaculum reducens MI-1]
Length = 120
Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 59/110 (53%), Gaps = 5/110 (4%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVS 67
S R RV E ++ + +I N+ +D I ++I+ V ++ DL A ++IS + D
Sbjct: 2 SHRPERVAEAIKKEVADLI-RNDIKDPRIG--FVTITGVEVTRDLSFAKIFISVMGSDAH 58
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+S L + ++R IGR ++ LR+ PEL F+ DTSL ++ ++
Sbjct: 59 RQETLSILQKSAGYMRSEIGRRIK-LRHAPELIFKLDTSLDHGTRIAEIL 107
>gi|226329680|ref|ZP_03805198.1| hypothetical protein PROPEN_03590 [Proteus penneri ATCC 35198]
gi|225202866|gb|EEG85220.1| hypothetical protein PROPEN_03590 [Proteus penneri ATCC 35198]
Length = 133
Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 64/117 (54%), Gaps = 14/117 (11%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
R+ RV +E++ + +IL E +D I + ++S V +S DL A V+++ L++S
Sbjct: 7 RSQRVSQEMQKEI-AIILQREVKDPRIG--MATVSGVEISRDLAYAKVFVTF-LNLSGGE 62
Query: 71 ---------VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
++ALN FIR +G+++R LR VPEL F YD SL +++ L+
Sbjct: 63 KSEEEMVAEGLTALNEAAGFIRSLLGKAMR-LRIVPELTFAYDNSLVEGMRMSNLVS 118
>gi|149189793|ref|ZP_01868074.1| ribosome-binding factor A [Vibrio shilonii AK1]
gi|148836442|gb|EDL53398.1| ribosome-binding factor A [Vibrio shilonii AK1]
Length = 138
Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 64/114 (56%), Gaps = 6/114 (5%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL--PL 64
K R RV ++++ L +IL E +D + +++IS+V +S DL A V+++
Sbjct: 3 KEFSRTQRVAQQLQKEL-ALILQREVRDSRLG--MVTISDVEVSRDLAYAKVFVTFLCVG 59
Query: 65 DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ +P+ ++AL + IR +G+ +R LR PE+RF YD +L +++ L+
Sbjct: 60 EQTPESSLAALREHEAHIRMMLGKRIR-LRLTPEVRFHYDNTLVEGMRMSNLVS 112
>gi|219850519|ref|YP_002464952.1| ribosome-binding factor A [Chloroflexus aggregans DSM 9485]
gi|254789740|sp|B8GAE1|RBFA_CHLAD RecName: Full=Ribosome-binding factor A
gi|219544778|gb|ACL26516.1| ribosome-binding factor A [Chloroflexus aggregans DSM 9485]
Length = 127
Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 52/94 (55%), Gaps = 5/94 (5%)
Query: 23 LMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR--VISALNCNIK 80
++ ++ E +D + S+++V +S DL+ A VYIS+ + +R ++AL
Sbjct: 16 ILGEVIQTELKDPRVG--FASVTKVEVSADLQHAKVYISI-MGTPEERATTMAALQRARG 72
Query: 81 FIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLN 114
F+R R+ +R++R++PEL DTS+ +N
Sbjct: 73 FLRKRVAEEMRHMRFIPELHLIEDTSIDYSLHIN 106
>gi|145348606|ref|XP_001418737.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578967|gb|ABO97030.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 171
Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 47/76 (61%), Gaps = 2/76 (2%)
Query: 43 SISEVCMSVDLRVATVYISLPLDV-SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRF 101
++++V +S DL+V VY+S+ D + I + +++R +IGR + +LR PE+RF
Sbjct: 52 TVADVEVSNDLQVVKVYVSILGDERGKNNAIKGMKRMEQYVRRKIGRRM-SLRLTPEIRF 110
Query: 102 RYDTSLQSYWKLNALM 117
YD S + K++AL+
Sbjct: 111 IYDDSFERGQKVSALL 126
>gi|269837287|ref|YP_003319515.1| ribosome-binding factor A [Sphaerobacter thermophilus DSM 20745]
gi|269786550|gb|ACZ38693.1| ribosome-binding factor A [Sphaerobacter thermophilus DSM 20745]
Length = 135
Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 59/103 (57%), Gaps = 7/103 (6%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS 67
SRR +++ + +R + IL E +D + + SI+ V +S DLR A VY+S+ L
Sbjct: 2 TSRRQVQLADFLRDEISE-ILQREMKDPRLG--LASITRVELSPDLRYAKVYVSV-LGSE 57
Query: 68 PDR--VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
DR ++AL F+R + +R +R+VPE+RFR D S++
Sbjct: 58 EDREATMAALTGAAGFVRHLLKPRMR-VRHVPEIRFRLDRSME 99
>gi|126664890|ref|ZP_01735874.1| ribosome-binding factor A [Marinobacter sp. ELB17]
gi|126631216|gb|EBA01830.1| ribosome-binding factor A [Marinobacter sp. ELB17]
Length = 152
Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 66/112 (58%), Gaps = 13/112 (11%)
Query: 14 RVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL----PLDV-SP 68
R+G++++ L +I E +D + +I+++ V +S DL A +Y+SL L SP
Sbjct: 10 RIGDQMQRELAQLI-QREIKDPRVG--MITVNAVKVSRDLGYADIYVSLLTTEELGAESP 66
Query: 69 D--RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYW-KLNALM 117
+ ++ LN F+RG++GR+++ LR VP LRF +D LQ Y +L+ L+
Sbjct: 67 EVKESLAVLNKASGFLRGQVGRAMK-LRVVPLLRFHFD-ELQGYSRRLDGLI 116
>gi|238650293|ref|YP_002916145.1| ribosome-binding factor A [Rickettsia peacockii str. Rustic]
gi|259552070|sp|C4K0J6|RBFA_RICPU RecName: Full=Ribosome-binding factor A
gi|238624391|gb|ACR47097.1| ribosome-binding factor A [Rickettsia peacockii str. Rustic]
Length = 120
Score = 47.0 bits (110), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 62/119 (52%), Gaps = 4/119 (3%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
MK +S R ++ + AL+ ++ + D + ++I++V ++ DL++A Y
Sbjct: 1 MKKLTKTHSHRQQKLASIINEALIEILRRGKMLDSRLFDCPLTITKVIVTTDLKIANCYF 60
Query: 61 SLPLD--VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
LP + ++ D ++ ALN + IR I + N+++ P++RF YD + K+ L+
Sbjct: 61 -LPFNTKLTIDEIMDALNNSKNAIRNFITNKI-NMKFSPDIRFHYDHGFDNAIKVAHLL 117
>gi|51473624|ref|YP_067381.1| ribosome-binding factor A [Rickettsia typhi str. Wilmington]
gi|61214908|sp|Q68WU3|RBFA_RICTY RecName: Full=Ribosome-binding factor A
gi|51459936|gb|AAU03899.1| ribosome-binding factor A [Rickettsia typhi str. Wilmington]
Length = 127
Score = 47.0 bits (110), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 61/119 (51%), Gaps = 4/119 (3%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
MK NS R ++ + L+ ++ + DR + ++I+++ ++ DL++A Y
Sbjct: 1 MKKLTKTNSHRQQKLASIINEVLIEILKRGKMLDRRLFDCPLTITKIVVTADLKIANCYF 60
Query: 61 SLPLD--VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
P + ++ + ++ ALN + IR I + N+++ PE+RF YD + K+ L+
Sbjct: 61 -FPFNTKLTFNDIMDALNNSKHAIRNFITNKI-NMKFSPEIRFHYDYGFDNAIKIEKLL 117
>gi|15892529|ref|NP_360243.1| ribosome-binding factor A [Rickettsia conorii str. Malish 7]
gi|20139548|sp|Q92I14|RBFA_RICCN RecName: Full=Ribosome-binding factor A
gi|15619690|gb|AAL03144.1| ribosome-binding factor A [Rickettsia conorii str. Malish 7]
Length = 120
Score = 47.0 bits (110), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 62/119 (52%), Gaps = 4/119 (3%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
MK +S R ++ + AL+ ++ + D + ++I++V ++ DL++A Y
Sbjct: 1 MKKLTKTHSHRQQKLASIINEALIEILRRGKMLDSRLFDCPLTITKVIVTADLKIANCYF 60
Query: 61 SLPLD--VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
LP + ++ D ++ ALN + IR I + N+++ P++RF YD + K+ L+
Sbjct: 61 -LPFNTKLTIDEIMDALNNSKNAIRNFITNKI-NMKFSPDIRFHYDHGFDNAIKVAHLL 117
>gi|89895262|ref|YP_518749.1| hypothetical protein DSY2516 [Desulfitobacterium hafniense Y51]
gi|219669693|ref|YP_002460128.1| ribosome-binding factor A [Desulfitobacterium hafniense DCB-2]
gi|122482377|sp|Q24UI7|RBFA_DESHY RecName: Full=Ribosome-binding factor A
gi|254789746|sp|B8FR05|RBFA_DESHD RecName: Full=Ribosome-binding factor A
gi|89334710|dbj|BAE84305.1| hypothetical protein [Desulfitobacterium hafniense Y51]
gi|219539953|gb|ACL21692.1| ribosome-binding factor A [Desulfitobacterium hafniense DCB-2]
Length = 125
Score = 47.0 bits (110), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 59/109 (54%), Gaps = 5/109 (4%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPD 69
R+ R+ E ++ + +I E +D I ++++ V ++ DL A VY+S+ D
Sbjct: 4 HRSNRLAETLKQEISQLI-REELKDPRIG--FVTVTSVEVADDLGNAKVYVSVLGDSQQA 60
Query: 70 R-VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ + AL F+R IG+ +R LR+ PE+ F+YDTS++ + L+
Sbjct: 61 KDSLDALKRAAGFVRSEIGKRVR-LRHAPEIVFKYDTSIEHGAHIAQLL 108
>gi|308068701|ref|YP_003870306.1| ribosome-binding factor A [Paenibacillus polymyxa E681]
gi|305857980|gb|ADM69768.1| Ribosome-binding factor A [Paenibacillus polymyxa E681]
Length = 116
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 60/109 (55%), Gaps = 5/109 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
R RVGE+++ L +I E +D I I+++ V ++ DL A +Y+S L + +
Sbjct: 5 RTGRVGEQIKKELSQLI-QTELKDPRIG--FITVTGVDLTNDLSQAKIYLSVLGDEEQKN 61
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ AL+ ++R +G+ +R LR++PEL F+ D S+ ++ L+
Sbjct: 62 SSLKALDKANGYLRSELGKRIR-LRHIPELIFKIDESIAYGSRIEKLLS 109
>gi|152989168|ref|YP_001350785.1| ribosome-binding factor A [Pseudomonas aeruginosa PA7]
gi|166219391|sp|A6VCK0|RBFA_PSEA7 RecName: Full=Ribosome-binding factor A
gi|150964326|gb|ABR86351.1| ribosome-binding factor A [Pseudomonas aeruginosa PA7]
Length = 128
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 66/115 (57%), Gaps = 7/115 (6%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K+ R R+G++++ L +I E +D + +++I+ V +S D+ A V+I++
Sbjct: 2 AKDYSRTQRIGDQMQRELAQLI-QREIKDPRLG--LVTITGVEVSRDVAHAKVFITVMGQ 58
Query: 66 VSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+RV + LN ++R +G+S++ LR VP+L F YD S++ +L+AL+
Sbjct: 59 DDAERVALNMEILNDAAGYLRMLLGKSMK-LRSVPQLHFHYDESIRRGAELSALI 112
>gi|298373455|ref|ZP_06983444.1| ribosome-binding factor A [Bacteroidetes oral taxon 274 str. F0058]
gi|298274507|gb|EFI16059.1| ribosome-binding factor A [Bacteroidetes oral taxon 274 str. F0058]
Length = 111
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 41 VISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRN-LRYVPEL 99
+IS+S+V +S D +A VYIS+ + S ++ + K IR +G+ ++N +R VPEL
Sbjct: 32 IISVSDVSISPDFALARVYISIFPSEKAGDIFSTIDTDSKSIRFELGKRIKNMMRTVPEL 91
Query: 100 RFRYDTSLQSYWKLNALM 117
F D SL +++ L+
Sbjct: 92 TFVLDDSLNYLERIDDLL 109
>gi|312129254|ref|YP_003996594.1| ribosome-binding factor a [Leadbetterella byssophila DSM 17132]
gi|311905800|gb|ADQ16241.1| ribosome-binding factor A [Leadbetterella byssophila DSM 17132]
Length = 124
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 53/103 (51%), Gaps = 2/103 (1%)
Query: 27 ILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRI 86
I EF+ L + + ++I++V +S DL VA VY+S + + + ++ + K IRG
Sbjct: 20 IFQREFRS-LFAGNFVTITDVKVSPDLSVAKVYLSFLKNHNRESLLEEIKEQTKKIRGMF 78
Query: 87 G-RSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALEK 128
G ++ + LR +P F D + + K+ L IP A E+
Sbjct: 79 GMKAGKQLRIIPHFSFFIDDTAEYAQKIEELFANIHIPPAEEE 121
>gi|113953283|ref|YP_731751.1| ribosome-binding factor A [Synechococcus sp. CC9311]
gi|123132376|sp|Q0I721|RBFA_SYNS3 RecName: Full=Ribosome-binding factor A
gi|113880634|gb|ABI45592.1| ribosome-binding factor A [Synechococcus sp. CC9311]
Length = 134
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 52/102 (50%), Gaps = 3/102 (2%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDV 66
RR RV +R ++++ +D + + ++SI+EV +S DL+ +++S
Sbjct: 3 QGRRVERVAALIRKETSELLIHG-IRDERVHQGMVSITEVEVSGDLQHCRIFVSVFGEQA 61
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
D V+ L F+RG +GR L +R PE+ F+ D ++
Sbjct: 62 QKDEVMDGLEAARGFLRGELGRRL-QMRRAPEIVFKLDLGIE 102
>gi|323343542|ref|ZP_08083769.1| ribosome-binding factor A [Prevotella oralis ATCC 33269]
gi|323095361|gb|EFZ37935.1| ribosome-binding factor A [Prevotella oralis ATCC 33269]
Length = 111
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 33 QDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRN 92
Q R++ +IS++ +S DL + T Y+S+ D +I + N K IR +G + N
Sbjct: 24 QTRMMHGVMISVTRARVSPDLSICTAYLSIFPSEKSDEIIHNITKNEKTIRYELGTRVHN 83
Query: 93 -LRYVPELRFRYDTSLQSYWKLNALM 117
LR +PELRF D SL +++ L+
Sbjct: 84 QLRIIPELRFFIDDSLDYIERIDELL 109
>gi|67459061|ref|YP_246685.1| ribosome-binding factor A [Rickettsia felis URRWXCal2]
gi|75536505|sp|Q4ULQ3|RBFA_RICFE RecName: Full=Ribosome-binding factor A
gi|67004594|gb|AAY61520.1| Ribosome-binding factor A [Rickettsia felis URRWXCal2]
Length = 120
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 62/119 (52%), Gaps = 4/119 (3%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
MK NS R ++ + AL+ ++ + D + ++I++V ++ DL++A Y
Sbjct: 1 MKKLTKTNSHRQQKLASIINEALIEILRRGKMLDSRLFDCPLTITKVIVTADLKIANCYF 60
Query: 61 SLPLD--VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
LP + ++ D ++ AL+ + IR I + N+++ P++RF YD + K+ L+
Sbjct: 61 -LPFNTKLTIDEIMDALSNSKNAIRNFITNKI-NMKFSPDIRFHYDHGFDNAIKVEELL 117
>gi|19705315|ref|NP_602810.1| ribosome-binding factor A [Fusobacterium nucleatum subsp. nucleatum
ATCC 25586]
gi|296328563|ref|ZP_06871082.1| ribosome-binding factor A [Fusobacterium nucleatum subsp. nucleatum
ATCC 23726]
gi|22096032|sp|Q8RHJ7|RBFA_FUSNN RecName: Full=Ribosome-binding factor A
gi|19713286|gb|AAL94109.1| Ribosome-binding factor A [Fusobacterium nucleatum subsp. nucleatum
ATCC 25586]
gi|296154372|gb|EFG95171.1| ribosome-binding factor A [Fusobacterium nucleatum subsp. nucleatum
ATCC 23726]
Length = 120
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 62/115 (53%), Gaps = 10/115 (8%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL--PLDVS 67
+R +G+E+ + V+L ++ + ++S++EV ++ DL+ A Y S+ PL
Sbjct: 4 QRLEGIGKEIMRVISKVLLEEVKNPKI--KGLVSVTEVDVTEDLKFADTYFSILPPLKSD 61
Query: 68 P-----DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ ++ ALN F+R R+ + ++RY PE+R + D S+++ K+ L+
Sbjct: 62 EKKYDHEEILEALNEIKGFLRKRVAEEV-DIRYTPEIRVKLDNSMENAIKITKLL 115
>gi|15604300|ref|NP_220816.1| ribosome-binding factor A [Rickettsia prowazekii str. Madrid E]
gi|3914549|sp|O05964|RBFA_RICPR RecName: Full=Ribosome-binding factor A
gi|2073498|emb|CAA72443.1| ribosomal binding factor A [Rickettsia prowazekii]
gi|3860992|emb|CAA14892.1| RIBOSOME-BINDING FACTOR A (rbfA) [Rickettsia prowazekii]
gi|292572049|gb|ADE29964.1| Ribosome-binding factor A [Rickettsia prowazekii Rp22]
Length = 128
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 61/119 (51%), Gaps = 4/119 (3%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
MK NS R ++ + L+ ++ + D+ + ++I+++ ++ DL++A Y
Sbjct: 1 MKKLTKTNSHRQQKLASIINEVLIEILKRGKMLDKRLFDCPLTITKIIVTADLKIANCYF 60
Query: 61 SLPLD--VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
P + ++ D ++ ALN + IR I + N+++ PE+RF YD + K+ L+
Sbjct: 61 -FPFNTKLTFDEIMDALNNSKHAIRNFITNRI-NMKFSPEIRFYYDYGFDNAIKIEELL 117
>gi|302874664|ref|YP_003843297.1| ribosome-binding factor A [Clostridium cellulovorans 743B]
gi|307690722|ref|ZP_07633168.1| ribosome-binding factor A [Clostridium cellulovorans 743B]
gi|302577521|gb|ADL51533.1| ribosome-binding factor A [Clostridium cellulovorans 743B]
Length = 127
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 57/108 (52%), Gaps = 4/108 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDVSPD 69
R+ ++ EE++ + VI N RL +IS++ V ++ DL+ A VY+S+ D D
Sbjct: 5 RSEKINEEMKKQISDVIRNRVRDPRLAP--MISVTSVDVTKDLKYAKVYVSIFGSDTEKD 62
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ L + FIR + + NLR PEL F DTS++ ++ L+
Sbjct: 63 ESLKILKNSSGFIRREVASKI-NLRSTPELLFNLDTSIEYGMHIDRLI 109
>gi|262393383|ref|YP_003285237.1| ribosome-binding factor A [Vibrio sp. Ex25]
gi|262336977|gb|ACY50772.1| ribosome-binding factor A [Vibrio sp. Ex25]
Length = 131
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 64/113 (56%), Gaps = 6/113 (5%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-- 64
K R RV ++++ L +IL E +D + +++IS+V +S DL A V+++
Sbjct: 3 KEFSRTQRVAQQLQKEL-AMILQREVRDSRLG--MVTISDVEVSRDLAYAKVFVTFLCVG 59
Query: 65 DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ +P+ ++AL + IR +G+ +R LR PE+RF YD +L +++ L+
Sbjct: 60 EQTPESCLAALREHEVHIRMMLGKRIR-LRLTPEIRFHYDNTLVEGMRMSNLV 111
>gi|146283629|ref|YP_001173782.1| ribosome-binding factor A [Pseudomonas stutzeri A1501]
gi|166219395|sp|A4VPN9|RBFA_PSEU5 RecName: Full=Ribosome-binding factor A
gi|145571834|gb|ABP80940.1| ribosome-binding factor A [Pseudomonas stutzeri A1501]
gi|327482024|gb|AEA85334.1| ribosome-binding factor A [Pseudomonas stutzeri DSM 4166]
Length = 129
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 63/116 (54%), Gaps = 8/116 (6%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K R R+G++++ L +I E +D + +I+I+ V +S DL A ++I++
Sbjct: 2 AKEFSRTQRIGDQMQRELALLI-QREIKDPRLG--LITITAVDVSRDLSHAKIFITIMGQ 58
Query: 66 VSPDRVISA----LNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
I LN F+R ++G+S++ LR VP+L F YD S++ +L++L+
Sbjct: 59 DDDQEAIKGNLRILNDAAGFLRMQLGKSMK-LRTVPQLHFNYDASIRRGVELSSLI 113
>gi|91228268|ref|ZP_01262204.1| ribosome-binding factor A [Vibrio alginolyticus 12G01]
gi|269966861|ref|ZP_06180934.1| ribosome-binding factor A [Vibrio alginolyticus 40B]
gi|91188145|gb|EAS74447.1| ribosome-binding factor A [Vibrio alginolyticus 12G01]
gi|269828528|gb|EEZ82789.1| ribosome-binding factor A [Vibrio alginolyticus 40B]
Length = 131
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 64/113 (56%), Gaps = 6/113 (5%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-- 64
K R RV ++++ L +IL E +D + +++IS+V +S DL A V+++
Sbjct: 3 KEFSRTQRVAQQLQKEL-AMILQREVRDSRLG--MVTISDVEVSRDLAYAKVFVTFLCVG 59
Query: 65 DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ +P+ ++AL + IR +G+ +R LR PE+RF YD +L +++ L+
Sbjct: 60 EQTPESCLAALREHEVHIRMMLGKRIR-LRLTPEIRFHYDNTLVEGMRMSNLV 111
>gi|209694191|ref|YP_002262119.1| ribosome-binding factor A [Aliivibrio salmonicida LFI1238]
gi|226723591|sp|B6ENE3|RBFA_ALISL RecName: Full=Ribosome-binding factor A
gi|208008142|emb|CAQ78284.1| ribosome-binding factor A [Aliivibrio salmonicida LFI1238]
Length = 135
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 65/113 (57%), Gaps = 6/113 (5%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-- 64
K RA RV ++++ L VIL E +D I +++IS+V +S DL A V+++
Sbjct: 3 KEFSRAQRVSQQLQKEL-AVILQREVRDSRIG--MVTISDVEVSRDLAYAKVFVTFFCVG 59
Query: 65 DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ +P+ ++AL + +R +G+ +R+ R PE+RF YD +L +++ L+
Sbjct: 60 EQTPETCLAALKEHEVPVRMMLGKRIRH-RLTPEVRFTYDNTLVEGMRMSNLV 111
>gi|297617189|ref|YP_003702348.1| ribosome-binding factor A [Syntrophothermus lipocalidus DSM 12680]
gi|297145026|gb|ADI01783.1| ribosome-binding factor A [Syntrophothermus lipocalidus DSM 12680]
Length = 126
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 59/111 (53%), Gaps = 3/111 (2%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS 67
+SRR R+ EE++ L + +D I +SI+ V +S DL A V++S+ D
Sbjct: 2 SSRRQERLAEEIKRGLSALFFEG-LKDPGIDPRAVSITRVDVSRDLSYARVHVSVLGDEK 60
Query: 68 PDR-VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
R ++AL FIR + L NLR+ PE+ F+ D S++ ++ A++
Sbjct: 61 KCRDTMAALERARGFIRSVLAGEL-NLRHAPEIVFQMDKSIEHGVRIAAIL 110
>gi|186681202|ref|YP_001864398.1| ribosome-binding factor A [Nostoc punctiforme PCC 73102]
gi|28380131|sp|Q93LL7|RBFA_NOSP7 RecName: Full=Ribosome-binding factor A
gi|14594717|gb|AAK68649.1| ribosome binding factor A [Nostoc punctiforme PCC 73102]
gi|186463654|gb|ACC79455.1| ribosome-binding factor A [Nostoc punctiforme PCC 73102]
Length = 139
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 61/111 (54%), Gaps = 3/111 (2%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDVS 67
+RR RV E ++ + ++LN DR + ++S+++V +S DL+ A +Y+S+ D +
Sbjct: 4 NRRVSRVAELIKREVSQMLLNGIKDDR-VGTGMVSVTDVDVSGDLQHAKIYVSIYGTDEA 62
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
++ L ++R +G +R LR PE+ F D S++ K+ AL+
Sbjct: 63 KVETMAGLKSATGYVRSELGARVR-LRRTPEVIFLEDRSIERGNKVLALLS 112
>gi|329905068|ref|ZP_08273996.1| Ribosome-binding factor A [Oxalobacteraceae bacterium IMCC9480]
gi|327547740|gb|EGF32516.1| Ribosome-binding factor A [Oxalobacteraceae bacterium IMCC9480]
Length = 129
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 62/112 (55%), Gaps = 12/112 (10%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
R +RV ++++ L ++ E +D + +I+++EV ++ D A V+ ++ +S D+
Sbjct: 11 RGIRVADQIQRDLAEIVAY-ELKDPRVG--MITVTEVQLTPDYAHAKVFFTM---LSDDK 64
Query: 71 -----VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
++ L FIRG++GR L ++ +PEL F +DTS +L+ L+
Sbjct: 65 EAIKNTVTGLKIASGFIRGQLGRRL-HVHTLPELHFVHDTSTARGMELSKLI 115
>gi|332706081|ref|ZP_08426153.1| ribosome-binding factor A [Lyngbya majuscula 3L]
gi|332355173|gb|EGJ34641.1| ribosome-binding factor A [Lyngbya majuscula 3L]
Length = 132
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 58/105 (55%), Gaps = 3/105 (2%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDVSP 68
RR RV ++ + ++LN+ DR+ S ++SI+ V +S DL+ A +Y+S+ D +
Sbjct: 5 RRVFRVSSLIQQEVSQMLLNDIKDDRVGS-GMVSITNVDVSGDLQHAKIYVSIYGTDEAR 63
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKL 113
+ ++ L ++R +GR +R LR PE+ F D L+ ++
Sbjct: 64 SKTMAGLKSATGYVRRELGRRIR-LRRTPEVMFIEDRGLEGGDQM 107
>gi|126730446|ref|ZP_01746257.1| ribosome-binding factor A [Sagittula stellata E-37]
gi|126709179|gb|EBA08234.1| ribosome-binding factor A [Sagittula stellata E-37]
Length = 113
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 53/94 (56%), Gaps = 3/94 (3%)
Query: 17 EEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS-PDRVISAL 75
E +R L V++ + D ++R I++ EV +S DL+VAT Y+ +PL D + + L
Sbjct: 3 EVIRRQLSDVLMRGDVHDPELNRLSITVGEVRVSPDLKVATAYV-VPLGGQKADDMFALL 61
Query: 76 NCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQS 109
+ N +R + + L L++ PELRFR D + +
Sbjct: 62 DRNKGELRRAVSKGL-TLKFAPELRFRLDETFDN 94
>gi|307111428|gb|EFN59662.1| hypothetical protein CHLNCDRAFT_12877 [Chlorella variabilis]
Length = 128
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 48/82 (58%), Gaps = 4/82 (4%)
Query: 43 SISEVCMSVDLRVATVYISL-PLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRF 101
S++EV +S DL+VA VY+S+ DV + I L ++R IG+ +R LR PE+RF
Sbjct: 49 SVTEVHISNDLQVAKVYLSIYSDDVGKEVAIEGLQRLEGYVRKHIGKQIR-LRLTPEIRF 107
Query: 102 RYDTSLQSYWKLNALMCLPKIP 123
D S++ ++ L L ++P
Sbjct: 108 VRDDSIERSERI--LKLLDQVP 127
>gi|156935693|ref|YP_001439609.1| ribosome-binding factor A [Cronobacter sakazakii ATCC BAA-894]
gi|156533947|gb|ABU78773.1| hypothetical protein ESA_03560 [Cronobacter sakazakii ATCC BAA-894]
Length = 150
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 60/115 (52%), Gaps = 6/115 (5%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
K R RV +E++ + +IL E +D + + ++S V +S DL A V+++ D
Sbjct: 20 KEFGRPQRVAQEMQKEI-AIILQREIKDPRVGL-MTTVSGVEVSRDLAYAKVFVTFLNDK 77
Query: 67 SPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
V I AL FIR +G+++R LR VPEL F YD SL +++ L+
Sbjct: 78 DEAAVKAGIKALQDASGFIRSLLGKAMR-LRIVPELTFFYDNSLVEGMRMSNLVT 131
>gi|148241380|ref|YP_001226537.1| ribosome-binding factor A [Synechococcus sp. RCC307]
gi|166219414|sp|A5GQM5|RBFA_SYNR3 RecName: Full=Ribosome-binding factor A
gi|147849690|emb|CAK27184.1| Ribosome-binding factor A [Synechococcus sp. RCC307]
Length = 131
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 59/112 (52%), Gaps = 3/112 (2%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDV 66
+ RR RV +R + +++N +D +++ ++SI+ V ++ DL+ V +S+ +
Sbjct: 3 HGRRVERVASMIRREMSELLVNG-VRDERVNQGMVSITNVVVAGDLQHCKVSVSIFGSES 61
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
D+ ++ L ++RG + R L N+R PEL F +D L ++ L+
Sbjct: 62 EQDQAMAGLRSAAPYLRGELSRRL-NMRRTPELVFHHDKGLAQGVEVLGLLS 112
>gi|126652566|ref|ZP_01724731.1| ribosome-binding factor A [Bacillus sp. B14905]
gi|126590694|gb|EAZ84810.1| ribosome-binding factor A [Bacillus sp. B14905]
Length = 113
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 62/110 (56%), Gaps = 5/110 (4%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI-SLPLDVS 67
S R+ RV E+++ L IL + +D + ++++ V ++ DL+ AT+YI SL +
Sbjct: 2 SLRSNRVAEQMKKEL-GDILGRKIKDPRVG--FVTVTGVEVTGDLQQATIYITSLGNERE 58
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ I AL FIR IG +R LR PEL F +D+S++ +++ L+
Sbjct: 59 REETIKALVKASGFIRSEIGSRIR-LRRTPELIFEFDSSIEYGNRIDTLL 107
>gi|294783783|ref|ZP_06749107.1| ribosome-binding factor A [Fusobacterium sp. 1_1_41FAA]
gi|294480661|gb|EFG28438.1| ribosome-binding factor A [Fusobacterium sp. 1_1_41FAA]
Length = 120
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 50/86 (58%), Gaps = 8/86 (9%)
Query: 39 RDVISISEVCMSVDLRVATVYISL--PLD-----VSPDRVISALNCNIKFIRGRIGRSLR 91
+ ++S++EV ++ DL+ A Y S+ PL+ + ++ ALN F+R R+ +
Sbjct: 31 KGLVSVTEVNVTEDLKFADTYFSILPPLNDEEKQYDHEEILEALNEIKGFLRKRVAEEV- 89
Query: 92 NLRYVPELRFRYDTSLQSYWKLNALM 117
++R+ PE+R + D S+++ K+ L+
Sbjct: 90 DIRFTPEIRVKLDNSMENAMKITKLL 115
>gi|326389434|ref|ZP_08211001.1| ribosome-binding factor A [Thermoanaerobacter ethanolicus JW 200]
gi|325994439|gb|EGD52864.1| ribosome-binding factor A [Thermoanaerobacter ethanolicus JW 200]
Length = 119
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 55/99 (55%), Gaps = 4/99 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDVSPD 69
R R+ EE++ + +IL E +D I + ++SI+++ ++ DLR A VY+S+ +
Sbjct: 4 RNSRLSEEMKREISKMILE-EIKDPRI-KAMVSITDIEVTKDLRYAKVYVSIYGSEEDKQ 61
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
L +IR IGR ++ +RY PE+ F D S++
Sbjct: 62 ETFEGLKSAAGYIRHEIGRRIK-MRYTPEIIFELDRSIE 99
>gi|237808989|ref|YP_002893429.1| ribosome-binding factor A [Tolumonas auensis DSM 9187]
gi|259552120|sp|C4L8X3|RBFA_TOLAT RecName: Full=Ribosome-binding factor A
gi|237501250|gb|ACQ93843.1| ribosome-binding factor A [Tolumonas auensis DSM 9187]
Length = 134
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 66/114 (57%), Gaps = 6/114 (5%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
K RA RV ++++ + VIL E +D + ++++S+V ++ DL+ A ++++ L+
Sbjct: 3 KEFGRADRVAQQIQREI-AVILQREVKDPRVG--MVTVSDVELTRDLQHAKIFVTFFLNE 59
Query: 67 SPD--RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
D + LN +IR +G++++ LR VPE+RF YD +L +++ L+
Sbjct: 60 VDDIEAGVKVLNDASGYIRILMGKAMK-LRVVPEIRFVYDKTLVEGMRISNLVT 112
>gi|212709944|ref|ZP_03318072.1| hypothetical protein PROVALCAL_00994 [Providencia alcalifaciens DSM
30120]
gi|212687456|gb|EEB46984.1| hypothetical protein PROVALCAL_00994 [Providencia alcalifaciens DSM
30120]
Length = 136
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 64/120 (53%), Gaps = 11/120 (9%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL--- 62
K R+ RV +E++ + +IL E +D I + ++S V +S DL V+++
Sbjct: 2 AKEFSRSQRVAQEMQKEI-AIILQREIKDPRIG--MATVSGVELSRDLAYGKVFVTFFNF 58
Query: 63 PLDVSPDRVIS----ALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ S + +++ ALN FIR +G+++R LR +PEL F YD SL +++ L+
Sbjct: 59 ANEKSEEEMVADGIKALNEASGFIRSLLGKAMR-LRIIPELTFEYDNSLVDGMRMSNLVS 117
>gi|282879081|ref|ZP_06287841.1| ribosome-binding factor A [Prevotella buccalis ATCC 35310]
gi|281298815|gb|EFA91224.1| ribosome-binding factor A [Prevotella buccalis ATCC 35310]
Length = 111
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 33 QDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRN 92
Q R ++S++ V +S DL + T Y+S+ + +I + N K IR +G +RN
Sbjct: 24 QTRATHGVMVSVTRVRVSPDLSICTAYLSIFPSEKAEEIIKNITANEKTIRYDLGTRVRN 83
Query: 93 -LRYVPELRFRYDTSLQSYWKLNALM 117
LR VPELRF D SL ++ L+
Sbjct: 84 QLRIVPELRFFIDDSLDYIEHIDELL 109
>gi|56478756|ref|YP_160345.1| ribosome-binding factor A [Aromatoleum aromaticum EbN1]
gi|61214724|sp|Q5NZS0|RBFA_AZOSE RecName: Full=Ribosome-binding factor A
gi|56314799|emb|CAI09444.1| ribosome-binding factor A [Aromatoleum aromaticum EbN1]
Length = 127
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 63/117 (53%), Gaps = 13/117 (11%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRD----VISISEVCMSVDLRVATVYI- 60
PK R+ RV E+VR L +I RL +D I++++V ++ D A V+
Sbjct: 2 PKEFSRSQRVAEQVRRELAELI-------RLEVKDPRVGFITLTDVEITPDYAHAKVFFT 54
Query: 61 SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
S+ + D +++ L+ F+R +G+ +R + +PEL F YD+S++ +++ L+
Sbjct: 55 SMKGEEGLDEILTGLHRASGFLRRELGKRVR-IHTLPELHFHYDSSVERGSRMSQLI 110
>gi|239826659|ref|YP_002949283.1| ribosome-binding factor A [Geobacillus sp. WCH70]
gi|259552007|sp|C5D9D1|RBFA_GEOSW RecName: Full=Ribosome-binding factor A
gi|239806952|gb|ACS24017.1| ribosome-binding factor A [Geobacillus sp. WCH70]
Length = 126
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 58/108 (53%), Gaps = 5/108 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP-D 69
RA RVGE+++ L +I + +D I +++++V ++ DL+ A VYIS+ D
Sbjct: 4 RATRVGEQMKKELSDII-GRKLKDPRIG--FVTVTDVRVTGDLQQAKVYISVLGDEEQRQ 60
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ L FIR IG+ +R LR PE+ F D S++ ++ L+
Sbjct: 61 NTLKGLEKAKGFIRSEIGQRIR-LRKTPEIFFEIDESIEYGNRIEQLI 107
>gi|253991501|ref|YP_003042857.1| ribosome-binding factor A [Photorhabdus asymbiotica subsp.
asymbiotica ATCC 43949]
gi|211638379|emb|CAR67001.1| ribosome-binding factor a [Photorhabdus asymbiotica subsp.
asymbiotica ATCC 43949]
gi|253782951|emb|CAQ86116.1| ribosome-binding factor a [Photorhabdus asymbiotica]
Length = 136
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 61/115 (53%), Gaps = 11/115 (9%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS----LPLDV 66
R RV +E++ + +IL E +D I + ++S V +S DL A V+++ L +
Sbjct: 7 RTQRVAQEMQKEI-AIILQREVKDPRIG--MATVSGVEVSRDLAYAKVFVTFLNVLTEEH 63
Query: 67 SPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
D V I AL FIR +G+++R LR VPEL F YD SL +++ L+
Sbjct: 64 DSDVVKNGIKALGEASGFIRSLLGKAMR-LRVVPELTFSYDNSLVEGMRMSNLVT 117
>gi|167040281|ref|YP_001663266.1| ribosome-binding factor A [Thermoanaerobacter sp. X514]
gi|256750793|ref|ZP_05491678.1| ribosome-binding factor A [Thermoanaerobacter ethanolicus CCSD1]
gi|300914365|ref|ZP_07131681.1| ribosome-binding factor A [Thermoanaerobacter sp. X561]
gi|307724399|ref|YP_003904150.1| ribosome-binding factor A [Thermoanaerobacter sp. X513]
gi|166854521|gb|ABY92930.1| ribosome-binding factor A [Thermoanaerobacter sp. X514]
gi|256750376|gb|EEU63395.1| ribosome-binding factor A [Thermoanaerobacter ethanolicus CCSD1]
gi|300889300|gb|EFK84446.1| ribosome-binding factor A [Thermoanaerobacter sp. X561]
gi|307581460|gb|ADN54859.1| ribosome-binding factor A [Thermoanaerobacter sp. X513]
Length = 119
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 55/99 (55%), Gaps = 4/99 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDVSPD 69
R R+ EE++ + +IL E +D I + ++SI+++ ++ DLR A VY+S+ +
Sbjct: 4 RNSRLSEEMKREISKMILE-EIKDPRI-KAMVSITDIEVTKDLRYAKVYVSIYGSEEDKQ 61
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
L +IR IGR ++ +RY PE+ F D S++
Sbjct: 62 ETFEGLKSAAGYIRHEIGRRIK-MRYTPEIIFELDRSIE 99
>gi|307264916|ref|ZP_07546478.1| ribosome-binding factor A [Thermoanaerobacter wiegelii Rt8.B1]
gi|306920174|gb|EFN50386.1| ribosome-binding factor A [Thermoanaerobacter wiegelii Rt8.B1]
Length = 119
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 55/99 (55%), Gaps = 4/99 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDVSPD 69
R R+ EE++ + +IL E +D I + ++SI+++ ++ DLR A VY+S+ +
Sbjct: 4 RNSRLSEEMKREISKMILE-EIKDPRI-KAMVSITDIEVTKDLRYAKVYVSIYGSEEDKQ 61
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
L +IR IGR ++ +RY PE+ F D S++
Sbjct: 62 ETFEGLKSAAGYIRHEIGRRIK-MRYTPEIIFELDRSIE 99
>gi|171769878|sp|A7MQE0|RBFA_ENTS8 RecName: Full=Ribosome-binding factor A
Length = 133
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 60/115 (52%), Gaps = 6/115 (5%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
K R RV +E++ + +IL E +D + + ++S V +S DL A V+++ D
Sbjct: 3 KEFGRPQRVAQEMQKEI-AIILQREIKDPRVGL-MTTVSGVEVSRDLAYAKVFVTFLNDK 60
Query: 67 SPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
V I AL FIR +G+++R LR VPEL F YD SL +++ L+
Sbjct: 61 DEAAVKAGIKALQDASGFIRSLLGKAMR-LRIVPELTFFYDNSLVEGMRMSNLVT 114
>gi|260887253|ref|ZP_05898516.1| ribosome-binding factor A [Selenomonas sputigena ATCC 35185]
gi|330838990|ref|YP_004413570.1| Ribosome-binding factor A [Selenomonas sputigena ATCC 35185]
gi|260863315|gb|EEX77815.1| ribosome-binding factor A [Selenomonas sputigena ATCC 35185]
gi|329746754|gb|AEC00111.1| Ribosome-binding factor A [Selenomonas sputigena ATCC 35185]
Length = 119
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 58/109 (53%), Gaps = 5/109 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
R +V E ++ + +IL E +D I +++++V M+ DLR A +++S + D +
Sbjct: 5 RIEKVQELMKQEISQIILQ-ELKDPRIG--FVTVTKVEMTGDLREAKIFVSIMGKDEALK 61
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ L ++ FIR IG+ +R LR+ PE+ F D SL + L+
Sbjct: 62 DTLQGLKSSLGFIRREIGKRIR-LRFTPEISFALDDSLAYSSHIQELLI 109
>gi|237739233|ref|ZP_04569714.1| ribosome-binding factor A [Fusobacterium sp. 2_1_31]
gi|229422841|gb|EEO37888.1| ribosome-binding factor A [Fusobacterium sp. 2_1_31]
Length = 120
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 50/86 (58%), Gaps = 8/86 (9%)
Query: 39 RDVISISEVCMSVDLRVATVYISL--PLDVSP-----DRVISALNCNIKFIRGRIGRSLR 91
+ ++S++EV ++ DL+ A Y S+ PL+ + ++ ALN F+R R+ +
Sbjct: 31 KGLVSVTEVNVTEDLKFADTYFSILPPLNNEEKQYDNEEILEALNEIKGFLRKRVAEEV- 89
Query: 92 NLRYVPELRFRYDTSLQSYWKLNALM 117
++R+ PE+R + D S+++ K+ L+
Sbjct: 90 DIRFTPEIRVKLDNSMENAMKITKLL 115
>gi|75908877|ref|YP_323173.1| ribosome-binding factor A [Anabaena variabilis ATCC 29413]
gi|123609303|sp|Q3M9Q8|RBFA_ANAVT RecName: Full=Ribosome-binding factor A
gi|75702602|gb|ABA22278.1| ribosome-binding factor A [Anabaena variabilis ATCC 29413]
Length = 133
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 64/126 (50%), Gaps = 10/126 (7%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDV 66
+RR RV E ++ + +++N DR + ++S+++V +S DL+ A +Y+S+ +
Sbjct: 3 TNRRVSRVAELIKREVSQMLINGIKDDR-VGTGMVSVTDVDVSGDLQHAKIYVSIYGTEE 61
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM-------CL 119
+ ++ L F+R +G +R LR PE+ F D S++ K+ L+ L
Sbjct: 62 AKAETMAGLKSATGFVRSELGARVR-LRRTPEVTFIEDRSIERGTKVLTLLNKLENARSL 120
Query: 120 PKIPVA 125
IP A
Sbjct: 121 DDIPSA 126
>gi|332160080|ref|YP_004296657.1| ribosome-binding factor A [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|318607360|emb|CBY28858.1| ribosome-binding factor A [Yersinia enterocolitica subsp.
palearctica Y11]
gi|325664310|gb|ADZ40954.1| ribosome-binding factor A [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|330862025|emb|CBX72192.1| ribosome-binding factor A [Yersinia enterocolitica W22703]
Length = 136
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 63/119 (52%), Gaps = 11/119 (9%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS----L 62
K R+ RV +E++ + +IL E +D + + ++S + +S DL A V+++ L
Sbjct: 3 KEFSRSQRVSQEMQKEI-ALILQREIKDPRVG--MATVSGIELSRDLAYAKVFVTFLNVL 59
Query: 63 PLDVSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ PD I AL +IR +G+++R LR VPEL F YD SL +++ L+
Sbjct: 60 TDNADPDTAKNGIKALQDASGYIRTLLGKAMR-LRIVPELTFAYDNSLIEGMRMSNLVT 117
>gi|198277392|ref|ZP_03209923.1| hypothetical protein BACPLE_03604 [Bacteroides plebeius DSM 17135]
gi|198269890|gb|EDY94160.1| hypothetical protein BACPLE_03604 [Bacteroides plebeius DSM 17135]
Length = 111
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 41 VISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRN-LRYVPEL 99
++S+S V +S D+ A VY+S+ + ++ +N N+K IR +G +R+ LR +PEL
Sbjct: 32 LVSVSIVRISPDMSYARVYLSVFPSERSEEIVKNINTNMKSIRFELGNRVRHQLRIIPEL 91
Query: 100 RFRYDTSLQSYWKLNALM 117
+F D SL K++ L+
Sbjct: 92 KFFVDDSLDYAEKIDELL 109
>gi|224080508|ref|XP_002306146.1| predicted protein [Populus trichocarpa]
gi|222849110|gb|EEE86657.1| predicted protein [Populus trichocarpa]
Length = 166
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 47/78 (60%), Gaps = 2/78 (2%)
Query: 41 VISISEVCMSVDLRVATVYISLPLDVSPDRV-ISALNCNIKFIRGRIGRSLRNLRYVPEL 99
+ +IS+V +S DL+V VY+S+ D V I+ L K++R ++GR ++ LR PE+
Sbjct: 47 LTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMK-LRLTPEI 105
Query: 100 RFRYDTSLQSYWKLNALM 117
RF D L+ ++ A++
Sbjct: 106 RFIEDEGLERGSRVIAIL 123
>gi|182417577|ref|ZP_02948902.1| ribosome-binding factor A [Clostridium butyricum 5521]
gi|237668125|ref|ZP_04528109.1| ribosome-binding factor A [Clostridium butyricum E4 str. BoNT E
BL5262]
gi|182378590|gb|EDT76118.1| ribosome-binding factor A [Clostridium butyricum 5521]
gi|237656473|gb|EEP54029.1| ribosome-binding factor A [Clostridium butyricum E4 str. BoNT E
BL5262]
Length = 117
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 62/110 (56%), Gaps = 7/110 (6%)
Query: 11 RALRVGEEVRSALMWVILNNEFQD-RLISRDVISISEVCMSVDLRVATVYISLPLDVSPD 69
R R+ EE + + +I NE +D RL + +IS+++V ++ DLR A VY+S+ + +
Sbjct: 5 RGGRINEEFKREISNLI-QNEIKDPRLTA--MISVTDVKVTKDLRYAKVYVSIFCNDEEE 61
Query: 70 RV--ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ ++AL FIR +G+ + NLR+ PE+ D S+ ++ L+
Sbjct: 62 KKSNLAALRGASGFIRKNVGQRI-NLRHTPEILIELDDSINYGMHMDELI 110
>gi|150016087|ref|YP_001308341.1| ribosome-binding factor A [Clostridium beijerinckii NCIMB 8052]
gi|189039533|sp|A6LSQ5|RBFA_CLOB8 RecName: Full=Ribosome-binding factor A
gi|149902552|gb|ABR33385.1| ribosome-binding factor A [Clostridium beijerinckii NCIMB 8052]
Length = 118
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 56/109 (51%), Gaps = 5/109 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL--PLDVSP 68
R R+ EE + + +I N RL + +IS+++V ++ DLR A VY+S+ D
Sbjct: 5 RGGRINEEFKREISNLIQNEVKDPRLTA--MISVTDVKVTKDLRYAKVYVSIFSKDDEEK 62
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ AL FIR +G+ + NLR+ PE+ D S+ ++ L+
Sbjct: 63 KNNLEALKNASGFIRKSVGQKI-NLRHTPEIIIELDDSINYGMHMDELI 110
>gi|89898350|ref|YP_515460.1| ribosome-binding factor A [Chlamydophila felis Fe/C-56]
gi|123483300|sp|Q254H3|RBFA_CHLFF RecName: Full=Ribosome-binding factor A
gi|89331722|dbj|BAE81315.1| ribosome binding factor A [Chlamydophila felis Fe/C-56]
Length = 120
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 3/94 (3%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVS 67
+RR +V +R A+ VIL + + IS I+++ VC+S DL A VY+S +P + +
Sbjct: 4 NRRIQKVNSLIREAIANVILKDVKHPK-ISNRWITVTRVCLSKDLHTARVYVSIMPHENT 62
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRF 101
+ AL + FI R + + L+Y PE+ F
Sbjct: 63 SAETLKALKASAGFIAYRASKGVF-LKYFPEISF 95
>gi|260596203|ref|YP_003208774.1| ribosome-binding factor A [Cronobacter turicensis z3032]
gi|260215380|emb|CBA27405.1| Ribosome-binding factor A [Cronobacter turicensis z3032]
Length = 133
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 60/115 (52%), Gaps = 6/115 (5%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
K R RV +E++ + +IL E +D + + ++S V +S DL A V+++ D
Sbjct: 3 KEFGRPQRVAQEMQKEI-AIILQREIKDPRVGL-MTTVSGVEVSRDLAYAKVFVTFLNDK 60
Query: 67 SPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
V I AL FIR +G+++R LR VPEL F YD SL +++ L+
Sbjct: 61 DDAAVKAGIKALQDASGFIRSLLGKAMR-LRIVPELTFFYDNSLVEGMRMSNLVT 114
>gi|238019438|ref|ZP_04599864.1| hypothetical protein VEIDISOL_01307 [Veillonella dispar ATCC 17748]
gi|237864137|gb|EEP65427.1| hypothetical protein VEIDISOL_01307 [Veillonella dispar ATCC 17748]
Length = 118
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 43 SISEVCMSVDLRVATVYISL-PLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRF 101
+I++V ++ DLR AT+Y+SL D + + AL IR +G+ L+ LR++P + F
Sbjct: 34 TITDVHVTGDLREATIYVSLFGSDKEKEDTLIALKHAAGHIRTELGKVLK-LRHIPSITF 92
Query: 102 RYDTSLQSYWKLNALM 117
DTSL + +L+
Sbjct: 93 DKDTSLDYSMHIESLL 108
>gi|88812959|ref|ZP_01128202.1| ribosome-binding factor A [Nitrococcus mobilis Nb-231]
gi|88789737|gb|EAR20861.1| ribosome-binding factor A [Nitrococcus mobilis Nb-231]
Length = 114
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 45/77 (58%), Gaps = 3/77 (3%)
Query: 43 SISEVCMSVDLRVATVYISL--PLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELR 100
++SEV +S D+ A V ++ + ++ALN + +RG +G+SLR LR VP LR
Sbjct: 26 TVSEVRLSRDMAYADVLVTRLGAQREESQQAVAALNHAARHLRGLLGQSLR-LRAVPALR 84
Query: 101 FRYDTSLQSYWKLNALM 117
F YD S + +++ L+
Sbjct: 85 FHYDDSFERSARVSHLI 101
>gi|92115188|ref|YP_575116.1| ribosome-binding factor A [Chromohalobacter salexigens DSM 3043]
gi|122419135|sp|Q1QSZ1|RBFA_CHRSD RecName: Full=Ribosome-binding factor A
gi|91798278|gb|ABE60417.1| ribosome-binding factor A [Chromohalobacter salexigens DSM 3043]
Length = 131
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 63/111 (56%), Gaps = 7/111 (6%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPD 69
+R RV ++++ L V++ E +D + ++++S V +S DL A +YI+L +
Sbjct: 5 KRTDRVADQLQQEL-AVLIQREIKDPRLG--MVTVSSVKVSRDLGYADIYITLLGENDAA 61
Query: 70 RV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
R+ + L F+R +I ++ LR+VPELRF YD S+ +L++L+
Sbjct: 62 RIDENLKVLRHARGFLRSQIANRIK-LRHVPELRFHYDESVVRGQRLSSLI 111
>gi|23099055|ref|NP_692521.1| ribosome-binding factor A [Oceanobacillus iheyensis HTE831]
gi|29427761|sp|Q8EQT9|RBFA_OCEIH RecName: Full=Ribosome-binding factor A
gi|22777283|dbj|BAC13556.1| ribosome-binding factor A [Oceanobacillus iheyensis HTE831]
Length = 113
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 60/108 (55%), Gaps = 5/108 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
RA R+ E+++ L IL+ + +D + +++++V ++ DL+ A VYIS+ D +
Sbjct: 5 RAHRIAEQMKKEL-GEILSRKIKDPRVG--FVTVTDVEVTGDLQQAKVYISVLGDEKKKQ 61
Query: 71 -VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ L+ FIR IG +R LR PE+ F +D +L+ ++ ++
Sbjct: 62 DTLLGLSKAKGFIRSEIGNRIR-LRKTPEITFEFDEALEQGNRIETIL 108
>gi|294791741|ref|ZP_06756889.1| ribosome-binding factor A [Veillonella sp. 6_1_27]
gi|294456971|gb|EFG25333.1| ribosome-binding factor A [Veillonella sp. 6_1_27]
Length = 118
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 43 SISEVCMSVDLRVATVYISL-PLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRF 101
+I++V ++ DLR AT+Y+SL D + + AL IR +G+ L+ LR++P + F
Sbjct: 34 TITDVHVTGDLREATIYVSLFGSDKEKEDTLIALKHAAGHIRTELGKVLK-LRHIPSITF 92
Query: 102 RYDTSLQSYWKLNALM 117
DTSL + +L+
Sbjct: 93 DKDTSLDYSMHIESLL 108
>gi|258545581|ref|ZP_05705815.1| ribosome-binding factor A [Cardiobacterium hominis ATCC 15826]
gi|258519281|gb|EEV88140.1| ribosome-binding factor A [Cardiobacterium hominis ATCC 15826]
Length = 128
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 64/117 (54%), Gaps = 12/117 (10%)
Query: 6 PKNSRRALRVGEEVRSALMWV---ILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL 62
PK R R+GE++R L IL++ ++SI+ V ++ DL A VY++
Sbjct: 2 PKGQDRTRRIGEQMRRDLAVAVPQILDHPHAS------LLSITAVRVTRDLSFAKVYVTH 55
Query: 63 PLDVSPDR--VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
++ + +R ++ ALN + +R + + L ++R +PEL F YD S++ +++ L+
Sbjct: 56 VINDADERQTLLRALNAHAGQLRHALAQKL-SIRKMPELHFVYDDSVEYGARMDHLL 111
>gi|254507466|ref|ZP_05119600.1| ribosome-binding factor A [Vibrio parahaemolyticus 16]
gi|219549536|gb|EED26527.1| ribosome-binding factor A [Vibrio parahaemolyticus 16]
Length = 135
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 63/113 (55%), Gaps = 6/113 (5%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-- 64
K R RV ++++ L +IL E +D + +++IS+V +S DL A V+++
Sbjct: 3 KEFSRTQRVAQQLQKEL-AMILQREVRDSRLG--MVTISDVEVSRDLAYAKVFVTFLCVG 59
Query: 65 DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ +P+ + AL + IR +G+ +R LR PE+RF YD +L +++ L+
Sbjct: 60 EQTPESCLEALREHEVHIRMMLGKRIR-LRLTPEVRFHYDNTLVEGMRMSNLV 111
>gi|294671352|ref|ZP_06736203.1| hypothetical protein NEIELOOT_03061 [Neisseria elongata subsp.
glycolytica ATCC 29315]
gi|291306984|gb|EFE48227.1| hypothetical protein NEIELOOT_03061 [Neisseria elongata subsp.
glycolytica ATCC 29315]
Length = 123
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 61/126 (48%), Gaps = 8/126 (6%)
Query: 3 NKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL 62
NKN + R RV E++ L ++ R I+I++V ++ D ATVY ++
Sbjct: 2 NKNHRGYARQDRVKEQIMRELAELVRRGLKDPRA---GFITINDVEVTRDYSHATVYYTV 58
Query: 63 PLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
D + D AL F+R + + ++ R +PEL F+YD SL+ ++ L+
Sbjct: 59 LDDATRDITAEALEHAKGFLRSELSKRIKLFR-IPELHFQYDQSLERGMSISHLIE---- 113
Query: 123 PVALEK 128
VA EK
Sbjct: 114 QVAAEK 119
>gi|282848831|ref|ZP_06258224.1| ribosome-binding factor A [Veillonella parvula ATCC 17745]
gi|294793602|ref|ZP_06758739.1| ribosome-binding factor A [Veillonella sp. 3_1_44]
gi|282581485|gb|EFB86875.1| ribosome-binding factor A [Veillonella parvula ATCC 17745]
gi|294455172|gb|EFG23544.1| ribosome-binding factor A [Veillonella sp. 3_1_44]
Length = 118
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 43 SISEVCMSVDLRVATVYISL-PLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRF 101
+I++V ++ DLR AT+Y+SL D + + AL IR +G+ L+ LR++P + F
Sbjct: 34 TITDVHVTGDLREATIYVSLFGSDKEKEDTLIALKHAAGHIRTELGKVLK-LRHIPSITF 92
Query: 102 RYDTSLQSYWKLNALM 117
DTSL + +L+
Sbjct: 93 DKDTSLDYSMHIESLL 108
>gi|229586718|ref|YP_002845219.1| ribosome-binding factor A [Rickettsia africae ESF-5]
gi|259552067|sp|C3PNG6|RBFA_RICAE RecName: Full=Ribosome-binding factor A
gi|228021768|gb|ACP53476.1| Ribosome-binding factor A [Rickettsia africae ESF-5]
Length = 120
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 62/119 (52%), Gaps = 4/119 (3%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
MK +S R ++ + AL+ ++ + D + ++I++V ++ DL++A Y
Sbjct: 1 MKKLTKTHSHRQQKLASIINEALIEILRRGKMLDTRLFDCPLTITKVIVTADLKIANCYF 60
Query: 61 SLPLD--VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
LP + ++ D ++ ALN + IR I + N+++ P++RF YD + K+ L+
Sbjct: 61 -LPFNTKLTIDEIMDALNNSKNAIRNFITNKI-NMKFSPDIRFYYDHGFDNAIKVAHLL 117
>gi|89101191|ref|ZP_01174022.1| ribosome-binding factor A [Bacillus sp. NRRL B-14911]
gi|89084100|gb|EAR63270.1| ribosome-binding factor A [Bacillus sp. NRRL B-14911]
Length = 112
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 42 ISISEVCMSVDLRVATVYISLPLDVSP-DRVISALNCNIKFIRGRIGRSLRNLRYVPELR 100
+++++V ++ DL+ ATVYIS+ D + + L FIR IG+ +R LR PE+
Sbjct: 21 VTVTDVAVTGDLQQATVYISVLGDEEKRENTLKGLAKAKGFIRSEIGQRIR-LRKTPEII 79
Query: 101 FRYDTSLQSYWKLNALM 117
F +D S+ +++ L+
Sbjct: 80 FEFDESIDYGNRIDTLL 96
>gi|323495470|ref|ZP_08100545.1| ribosome-binding factor A [Vibrio sinaloensis DSM 21326]
gi|323319467|gb|EGA72403.1| ribosome-binding factor A [Vibrio sinaloensis DSM 21326]
Length = 135
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 63/113 (55%), Gaps = 6/113 (5%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-- 64
K R RV ++++ L +IL E +D + +++IS+V +S DL A V+++
Sbjct: 3 KEFSRTQRVAQQLQKEL-AMILQREVRDSRLG--MVTISDVEVSRDLAYAKVFVTFLCVG 59
Query: 65 DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ +P+ + AL + IR +G+ +R LR PE+RF YD +L +++ L+
Sbjct: 60 EQTPESCLEALREHEVHIRMMLGKRIR-LRLTPEVRFHYDNTLVEGMRMSNLV 111
>gi|261879008|ref|ZP_06005435.1| ribosome-binding factor A [Prevotella bergensis DSM 17361]
gi|270334392|gb|EFA45178.1| ribosome-binding factor A [Prevotella bergensis DSM 17361]
Length = 111
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 33 QDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRN 92
Q R + ++S+++V +S DL + T Y+S+ ++ + N K IR +G+ +RN
Sbjct: 24 QTRQMKGVLVSVTKVRISPDLSICTAYLSIFPSEKGSELLDNIKANEKTIRYELGKRVRN 83
Query: 93 -LRYVPELRFRYDTSLQSYWKLNALM 117
LR +PELRF D SL ++ L+
Sbjct: 84 QLRIIPELRFFIDDSLDYSEHIDELL 109
>gi|3914553|sp|O34272|RBFA_YEREN RecName: Full=Ribosome-binding factor A
gi|2462713|emb|CAA71698.1| yhbB [Yersinia enterocolitica]
Length = 133
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 62/115 (53%), Gaps = 11/115 (9%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS----LPLDV 66
R+ RV +E++ + +IL E +D + + ++S + +S DL A V+++ L +
Sbjct: 4 RSQRVSQEMQKEI-ALILQREIKDPRVG--MATVSGIELSRDLAYAKVFVTFLNVLTDNA 60
Query: 67 SPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
PD I AL +IR +G+++R LR VPEL F YD SL +++ L+
Sbjct: 61 DPDTAKNGIKALQDASGYIRTLLGKAMR-LRIVPELTFAYDNSLIEGMRMSNLVT 114
>gi|146328987|ref|YP_001208966.1| ribosome-binding factor A [Dichelobacter nodosus VCS1703A]
gi|166218436|sp|A5EWY8|RBFA_DICNV RecName: Full=Ribosome-binding factor A
gi|146232457|gb|ABQ13435.1| ribosome-binding factor A [Dichelobacter nodosus VCS1703A]
Length = 122
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 58/110 (52%), Gaps = 6/110 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
R R+GE++R L +++ ++S + V ++ DL A VY++ LD +R
Sbjct: 7 RTRRIGEQMRRDLAQALVDIVHHPHA---SLLSFTAVHLTRDLSFAKVYVTHVLDNEEER 63
Query: 71 --VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+++ LN R + ++L ++R VPEL+F YD S++ ++ L+
Sbjct: 64 SELVAELNAKAGQFRHYLAKNL-SIRKVPELQFYYDQSVEYGARMEQLLT 112
>gi|89095213|ref|ZP_01168136.1| Ribosome-binding factor A [Oceanospirillum sp. MED92]
gi|89080510|gb|EAR59759.1| Ribosome-binding factor A [Oceanospirillum sp. MED92]
Length = 135
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 63/113 (55%), Gaps = 10/113 (8%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
R R+ ++++ L +I +F+ + ++++S V +S DL A VYI+ LPL+ +
Sbjct: 7 RTERIADQLQRELAQLI---QFEIKDPRLGMVTVSYVKVSKDLGFADVYITVLPLNGKDE 63
Query: 70 -----RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ LN F+RG + R+++ LR +P+LRF +D +++ L+ L+
Sbjct: 64 AEAIVDSLKVLNSAAGFLRGELARNIK-LRIMPQLRFHFDETIERGRHLHHLI 115
>gi|134095609|ref|YP_001100684.1| ribosome-binding factor A [Herminiimonas arsenicoxydans]
gi|172044150|sp|A4G7S6|RBFA_HERAR RecName: Full=Ribosome-binding factor A
gi|133739512|emb|CAL62563.1| ribosome-binding factor A [Herminiimonas arsenicoxydans]
Length = 128
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 61/109 (55%), Gaps = 6/109 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPD- 69
R LRV ++++ L ++ E +D + +I+I+EV ++ D A V+ ++ D +
Sbjct: 11 RGLRVADQIQRDLSEIVAF-ELKDPRVG--MITITEVQVTPDYAHAKVFFTMLSDNKDEI 67
Query: 70 -RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+S L+ +IRG++GR L ++ +PEL F +DTS +++ L+
Sbjct: 68 KNTVSGLSAASGYIRGQLGRRL-SIHTLPELHFVHDTSTARGIEMSKLI 115
>gi|260910466|ref|ZP_05917135.1| ribosome-binding factor A [Prevotella sp. oral taxon 472 str.
F0295]
gi|260635412|gb|EEX53433.1| ribosome-binding factor A [Prevotella sp. oral taxon 472 str.
F0295]
Length = 111
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 33 QDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRN 92
Q R++ ++S++ +S DL + T Y+S+ + ++ + NIK IR +G + N
Sbjct: 24 QTRMMHGVMVSVTRTRVSPDLSICTAYLSVFPSEKGEELLKNIESNIKTIRYELGTRVHN 83
Query: 93 -LRYVPELRFRYDTSLQSYWKLNALM 117
LR +PELRF D SL +++ L+
Sbjct: 84 QLRIIPELRFFIDDSLDYIERIDELL 109
>gi|37199640|dbj|BAC95471.1| ribosome-binding factor A [Vibrio vulnificus YJ016]
Length = 148
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 65/114 (57%), Gaps = 6/114 (5%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-- 64
K+ R RV ++++ L +IL E +D + +++IS+V +S DL A V+++
Sbjct: 20 KDFSRTQRVSQQLQKELA-MILQREVRDSRLG--MVTISDVEVSRDLAYAKVFVTFLCVG 76
Query: 65 DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ +P+ ++AL + IR +G+ +R LR PE+RF YD +L +++ L+
Sbjct: 77 EQTPESCLAALREHEVHIRMMLGKRIR-LRLTPEVRFYYDNTLVEGMRMSNLVT 129
>gi|317121858|ref|YP_004101861.1| ribosome-binding factor A [Thermaerobacter marianensis DSM 12885]
gi|315591838|gb|ADU51134.1| ribosome-binding factor A [Thermaerobacter marianensis DSM 12885]
Length = 177
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 57/109 (52%), Gaps = 6/109 (5%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSP 68
+R RV E +R AL ++ +D + + ++ V +S D+R A V IS + D +
Sbjct: 4 KRRERVAEAIREALAEIL--RRVKDPRVG--MAGVTSVELSPDMRHARVRISVIGDDETR 59
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
R + L FIR +GR++R LR+VPEL FR D S ++ L+
Sbjct: 60 RRTMEGLERARGFIRSELGRAIR-LRHVPELDFRLDESAAYSVRIAQLL 107
>gi|194476765|ref|YP_002048944.1| ribosome-binding factor A [Paulinella chromatophora]
gi|171191772|gb|ACB42734.1| ribosome-binding factor A [Paulinella chromatophora]
Length = 124
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 53/92 (57%), Gaps = 2/92 (2%)
Query: 27 ILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDVSPDRVISALNCNIKFIRGR 85
++++ +DR + + ++S++EV ++ DL+ +++S+ + +V++ L F+RG
Sbjct: 21 LISSSIRDRRVHQGMMSVTEVKLAGDLQHCKIFVSIFGSEEERHQVLTGLQSASAFVRGE 80
Query: 86 IGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+GR L+ LR PE+ F D ++ + L+
Sbjct: 81 LGRRLK-LRRTPEIVFELDRGIEKGTSVIGLL 111
>gi|33860672|ref|NP_892233.1| ribosome-binding factor A [Prochlorococcus marinus subsp. pastoris
str. CCMP1986]
gi|39931780|sp|Q7V3G3|RBFA_PROMP RecName: Full=Ribosome-binding factor A
gi|33633614|emb|CAE18571.1| Ribosome-binding factor A [Prochlorococcus marinus subsp. pastoris
str. CCMP1986]
Length = 132
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 50/86 (58%), Gaps = 2/86 (2%)
Query: 24 MWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI-SLPLDVSPDRVISALNCNIKFI 82
+ +IL N+ ++ L+ + I+IS++ +S DL+ +YI S + ++ LN +I
Sbjct: 18 ITLILQNDLENDLLRSNFINISKIELSGDLQFCKIYITSTAEEAIRKEIVEELNLAKTYI 77
Query: 83 RGRIGRSLRNLRYVPELRFRYDTSLQ 108
R +G+ + +R VPE+ F+ DT L+
Sbjct: 78 RHTLGQRIE-MRRVPEMTFKDDTVLE 102
>gi|330444478|ref|YP_004377464.1| ribosome-binding factor A [Chlamydophila pecorum E58]
gi|328807588|gb|AEB41761.1| ribosome-binding factor A [Chlamydophila pecorum E58]
Length = 119
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 53/99 (53%), Gaps = 4/99 (4%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLD- 65
+RR +V +R A+ VIL + Q IS I+++ V +S DLR A VY+S +P +
Sbjct: 3 GNRRIQKVNSLLREAIAEVILKD-VQHPKISNHWITVTRVSLSKDLRFAQVYVSIMPQEK 61
Query: 66 VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYD 104
V+ + AL + FI R + + L+Y PEL F +
Sbjct: 62 VTIQETLEALKVSAGFIACRTSKKVV-LKYFPELNFHLE 99
>gi|28899229|ref|NP_798834.1| ribosome-binding factor A [Vibrio parahaemolyticus RIMD 2210633]
gi|153838296|ref|ZP_01990963.1| ribosome-binding factor A [Vibrio parahaemolyticus AQ3810]
gi|260362208|ref|ZP_05775192.1| ribosome-binding factor A [Vibrio parahaemolyticus K5030]
gi|260879076|ref|ZP_05891431.1| ribosome-binding factor A [Vibrio parahaemolyticus AN-5034]
gi|260897747|ref|ZP_05906243.1| ribosome-binding factor A [Vibrio parahaemolyticus Peru-466]
gi|260900803|ref|ZP_05909198.1| ribosome-binding factor A [Vibrio parahaemolyticus AQ4037]
gi|31076895|sp|Q87M03|RBFA_VIBPA RecName: Full=Ribosome-binding factor A
gi|28807453|dbj|BAC60718.1| ribosome-binding factor A [Vibrio parahaemolyticus RIMD 2210633]
gi|149748285|gb|EDM59144.1| ribosome-binding factor A [Vibrio parahaemolyticus AQ3810]
gi|308088966|gb|EFO38661.1| ribosome-binding factor A [Vibrio parahaemolyticus Peru-466]
gi|308089597|gb|EFO39292.1| ribosome-binding factor A [Vibrio parahaemolyticus AN-5034]
gi|308108183|gb|EFO45723.1| ribosome-binding factor A [Vibrio parahaemolyticus AQ4037]
gi|308111465|gb|EFO49005.1| ribosome-binding factor A [Vibrio parahaemolyticus K5030]
gi|328474235|gb|EGF45040.1| ribosome-binding factor A [Vibrio parahaemolyticus 10329]
Length = 131
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 64/114 (56%), Gaps = 6/114 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL- 64
K R RV ++++ L +IL E +D + +++IS+V +S DL A V+++
Sbjct: 2 SKEFSRTQRVAQQLQKEL-AMILQREVRDSRLG--MVTISDVEVSRDLAYAKVFVTFLCV 58
Query: 65 -DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ +P+ ++AL + IR +G+ +R LR PE+RF YD +L +++ L+
Sbjct: 59 GEQTPESCLAALREHEVHIRMMLGKRIR-LRLTPEIRFYYDNTLVEGMRMSNLV 111
>gi|299534738|ref|ZP_07048068.1| ribosome-binding factor A [Lysinibacillus fusiformis ZC1]
gi|298729826|gb|EFI70371.1| ribosome-binding factor A [Lysinibacillus fusiformis ZC1]
Length = 113
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 63/110 (57%), Gaps = 5/110 (4%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI-SLPLDVS 67
S R+ RV E+++ L IL + +D + ++++ V ++ DL+ AT+YI SL +
Sbjct: 2 SLRSNRVAEQMKKEL-GDILGRKIKDPRVG--FVTVTGVEVTGDLQQATIYITSLGNERE 58
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ + AL FIR IG +R LR PEL F +D+S++ ++++L+
Sbjct: 59 REETLKALVKASGFIRSEIGSRIR-LRRTPELIFEFDSSIEYGNRIDSLL 107
>gi|229592635|ref|YP_002874754.1| ribosome-binding factor A [Pseudomonas fluorescens SBW25]
gi|259552059|sp|C3K258|RBFA_PSEFS RecName: Full=Ribosome-binding factor A
gi|229364501|emb|CAY52349.1| ribosome-binding factor A [Pseudomonas fluorescens SBW25]
Length = 131
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 62/114 (54%), Gaps = 7/114 (6%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
K R R+G++++ L +I E +D + +++I+ V +S D+ A ++I++
Sbjct: 3 KEYSRTQRIGDQMQRELAQLI-RREVKDPRVG--LVTITAVEVSRDVGHAKIFITVMGQD 59
Query: 67 SPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
S + + I LN F+R ++ R ++ LR VP+L F YD S+ L+AL+
Sbjct: 60 SAEEIAQSIKVLNAAAGFLRMQLAREMK-LRSVPQLHFHYDESVVRGAHLSALI 112
>gi|86605483|ref|YP_474246.1| ribosome-binding factor A [Synechococcus sp. JA-3-3Ab]
gi|123507268|sp|Q2JW85|RBFA_SYNJA RecName: Full=Ribosome-binding factor A
gi|86554025|gb|ABC98983.1| ribosome-binding factor A [Synechococcus sp. JA-3-3Ab]
Length = 149
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 65/122 (53%), Gaps = 3/122 (2%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD-V 66
+RR RV E ++ + ++L+ E +D + ++SI +V +S DL+ A +++S+ D
Sbjct: 3 TARRVARVAELIKREVSQILLS-EIKDDRVGAGMVSIVDVEVSNDLQNARIFVSIYGDEA 61
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVAL 126
+ + + L F+R IG+ L LR VP + F D SL+ ++ AL+ + P
Sbjct: 62 AQQQTMEGLASATPFVRREIGQRL-GLRRVPTVVFLQDRSLERGSRVLALLNQLRQPAEA 120
Query: 127 EK 128
++
Sbjct: 121 QQ 122
>gi|17227559|ref|NP_484107.1| ribosome-binding factor A [Nostoc sp. PCC 7120]
gi|20978596|sp|Q8Z0M8|RBFA_ANASP RecName: Full=Ribosome-binding factor A
gi|17135041|dbj|BAB77587.1| ribosome binding facror A [Nostoc sp. PCC 7120]
Length = 133
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 60/111 (54%), Gaps = 3/111 (2%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDV 66
+RR RV E ++ + +++N DR + ++S+++V +S DL+ A +Y+S+ +
Sbjct: 3 TNRRVSRVAELIKREVSQMLINGIKDDR-VGTGMVSVTDVDVSGDLQHAKIYVSIYGTEE 61
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ ++ L F+R +G +R LR PE+ F D S++ K+ L+
Sbjct: 62 AKAETMAGLKSATGFVRSELGARVR-LRRTPEVTFIEDRSIERGTKVLTLL 111
>gi|116071460|ref|ZP_01468728.1| Ribosome-binding factor A [Synechococcus sp. BL107]
gi|116065083|gb|EAU70841.1| Ribosome-binding factor A [Synechococcus sp. BL107]
Length = 134
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 59/113 (52%), Gaps = 7/113 (6%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL---PL 64
RR RV +R +++N +D + + ++SI+ V ++ DL+ +++S+ P
Sbjct: 3 QGRRVERVAALIRKETSELLING-IRDERVHKGMVSITSVEVAGDLQHCKIFVSIFGEPN 61
Query: 65 DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
D + V+ L ++RG +GR L+ +R PE++F+ D L+ + L+
Sbjct: 62 D--QNEVMEGLEAASGYLRGELGRRLQ-MRRAPEVKFQLDRGLEKGTSVLGLL 111
>gi|256821532|ref|YP_003145495.1| ribosome-binding factor A [Kangiella koreensis DSM 16069]
gi|256795071|gb|ACV25727.1| ribosome-binding factor A [Kangiella koreensis DSM 16069]
Length = 122
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 64/111 (57%), Gaps = 9/111 (8%)
Query: 11 RALRVGEEVRSALMWVILNNEFQD-RLISRDVISISEVCMSVDLRVATVYIS-LPLDVSP 68
RA RV ++++ L V+L E +D RL ++++S V ++ DL+ A V+++ L D
Sbjct: 5 RAKRVADQIQRDL-AVLLQREMKDPRL---GIVTVSGVEVTSDLQNAKVFVTFLGKDEEQ 60
Query: 69 D--RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ + + L F+R ++ +S+R +R VP LRF +D S+ K+ +L+
Sbjct: 61 EIKQALEVLTGAAGFLRSQLAKSIR-MRSVPSLRFLFDKSIVEGQKMTSLI 110
>gi|300113658|ref|YP_003760233.1| ribosome-binding factor A [Nitrosococcus watsonii C-113]
gi|299539595|gb|ADJ27912.1| ribosome-binding factor A [Nitrosococcus watsonii C-113]
Length = 127
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 61/108 (56%), Gaps = 5/108 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
RA RVGE ++ L +L E +D + ++++S V +S D R A VY++ L +
Sbjct: 7 RARRVGELLQRELAR-LLQAELKDPRVK--LVTVSHVRVSPDFRQAKVYVTFLGKEEDTQ 63
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
R ++ LN F++ + + + LR VP L+F YD S++ +L+AL+
Sbjct: 64 RQLTILNKATGFLQHGLSQRV-ELRVVPRLQFVYDDSIKRGRRLSALI 110
>gi|255543903|ref|XP_002513014.1| Ribosome-binding factor A, putative [Ricinus communis]
gi|223548025|gb|EEF49517.1| Ribosome-binding factor A, putative [Ricinus communis]
Length = 221
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 59/114 (51%), Gaps = 15/114 (13%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEF------------QDRLISRDVISISEVCMSVDLRV 55
N RR V ++++ L ++L ++ D+ +S + +IS+V +S DL+V
Sbjct: 59 NPRRVKMVAKQIQRELSDMLLTDKVLQYAILPEAALGADKYLSS-LTTISDVEVSTDLQV 117
Query: 56 ATVYISLPLDVSPDRV-ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
VY+S+ D V I+ L K++R +GR ++ LR PE+RF D S +
Sbjct: 118 VKVYVSVFGDDRGKEVAIAGLKAKAKYVRSELGRRMK-LRLTPEIRFIEDESFE 170
>gi|139436988|ref|ZP_01771148.1| Hypothetical protein COLAER_00122 [Collinsella aerofaciens ATCC
25986]
gi|133776635|gb|EBA40455.1| Hypothetical protein COLAER_00122 [Collinsella aerofaciens ATCC
25986]
Length = 136
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 66/124 (53%), Gaps = 9/124 (7%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
K ++ R+GE++R L +++L RL D+++++ V ++VD A VY+S D
Sbjct: 2 KQTQATRRLGEQLREKLGYILLFEVSDPRL---DLVTLTAVEVAVDRSFARVYVS--CDA 56
Query: 67 SP-DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLN-ALMCLPKIPV 124
S D V+ AL IR + RSL + R PEL FR D S ++ AL +P +
Sbjct: 57 SRYDEVMEALASAKGRIRSLLARSL-DWRVTPELDFRIDRSTDEAERITRALENVPAT-L 114
Query: 125 ALEK 128
A+EK
Sbjct: 115 AIEK 118
>gi|27365058|ref|NP_760586.1| ribosome-binding factor A [Vibrio vulnificus CMCP6]
gi|161486605|ref|NP_935500.2| ribosome-binding factor A [Vibrio vulnificus YJ016]
gi|320155442|ref|YP_004187821.1| ribosome-binding factor A [Vibrio vulnificus MO6-24/O]
gi|29427705|sp|Q8DBV9|RBFA_VIBVU RecName: Full=Ribosome-binding factor A
gi|39931703|sp|Q7MI10|RBFA_VIBVY RecName: Full=Ribosome-binding factor A
gi|27361204|gb|AAO10113.1| ribosome-binding factor A [Vibrio vulnificus CMCP6]
gi|319930754|gb|ADV85618.1| ribosome-binding factor A [Vibrio vulnificus MO6-24/O]
Length = 131
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 65/113 (57%), Gaps = 6/113 (5%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-- 64
K+ R RV ++++ L +IL E +D + +++IS+V +S DL A V+++
Sbjct: 3 KDFSRTQRVSQQLQKEL-AMILQREVRDSRLG--MVTISDVEVSRDLAYAKVFVTFLCVG 59
Query: 65 DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ +P+ ++AL + IR +G+ +R LR PE+RF YD +L +++ L+
Sbjct: 60 EQTPESCLAALREHEVHIRMMLGKRIR-LRLTPEVRFYYDNTLVEGMRMSNLV 111
>gi|310641597|ref|YP_003946355.1| ribosome-binding factor a [Paenibacillus polymyxa SC2]
gi|309246547|gb|ADO56114.1| Ribosome-binding factor A [Paenibacillus polymyxa SC2]
Length = 116
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 59/109 (54%), Gaps = 5/109 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
R RVGE+++ L +I E +D I I+++ V ++ DL A VY+S L +
Sbjct: 5 RTGRVGEQIKKELSLLI-QTELKDPRIG--FITVTGVDVTNDLSQAKVYLSVLGDEEQKT 61
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ AL+ ++R +G+ +R LR++PEL F+ D S+ ++ L+
Sbjct: 62 SSLKALDKANGYLRSELGKRIR-LRHIPELIFKIDESIAYGSRIEKLLS 109
>gi|313906210|ref|ZP_07839556.1| ribosome-binding factor A [Eubacterium cellulosolvens 6]
gi|313468940|gb|EFR64296.1| ribosome-binding factor A [Eubacterium cellulosolvens 6]
Length = 129
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 54/103 (52%), Gaps = 4/103 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLD 65
KNS + R+ E V+ L +I N+ R+ + S++E ++ DL+ V IS L +
Sbjct: 3 KNSVKNTRINEAVKEELSSIIRNSVKDPRIAM--MTSVTEAIVAPDLKTCKVMISVLGDE 60
Query: 66 VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
+ ++ L + KFIR + L NLR PEL FR D S++
Sbjct: 61 KAKSDTMTGLRSSAKFIRHELAVRL-NLRNTPELTFRLDESIE 102
>gi|148240554|ref|YP_001225941.1| ribosome-binding factor A [Synechococcus sp. WH 7803]
gi|166219413|sp|A5GNX9|RBFA_SYNPW RecName: Full=Ribosome-binding factor A
gi|147849093|emb|CAK24644.1| Ribosome-binding factor A [Synechococcus sp. WH 7803]
Length = 140
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 59/112 (52%), Gaps = 7/112 (6%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
RR RV +R ++++ DR + + +ISI++V +S DL+ +++S+ D P
Sbjct: 4 GRRVERVAALIRKETSELLMHGIRDDR-VHQGLISITQVDVSGDLQHCKIFVSVLAD--P 60
Query: 69 D---RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ +V+ L F+RG +GR L+ +R PE+ F D L+ + L+
Sbjct: 61 EGRAQVMEGLQAASSFLRGELGRRLQ-MRRAPEVVFHLDRGLEKGASVLGLL 111
>gi|59711094|ref|YP_203870.1| ribosome-binding factor A [Vibrio fischeri ES114]
gi|71648821|sp|Q5E7L4|RBFA_VIBF1 RecName: Full=Ribosome-binding factor A
gi|59479195|gb|AAW84982.1| 30s ribosome binding factor [Vibrio fischeri ES114]
Length = 135
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 64/114 (56%), Gaps = 6/114 (5%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL--PL 64
K R RV ++++ L V+L E +D I +++IS+V +S DL A V+++
Sbjct: 3 KEFSRTQRVSQQLQKEL-AVMLQREVRDSRIG--MVTISDVEVSRDLAYAKVFVTFFCVG 59
Query: 65 DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ +P+ ++AL + +R +G+ +R LR PE+RF YD +L +++ L+
Sbjct: 60 EQTPESSLAALKEHEPSLRMMLGKRIR-LRLTPEIRFTYDNTLVEGMRMSNLVT 112
>gi|300871728|ref|YP_003786601.1| ribosome-binding factor A [Brachyspira pilosicoli 95/1000]
gi|300689429|gb|ADK32100.1| ribosome binding factor A [Brachyspira pilosicoli 95/1000]
Length = 122
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 57/106 (53%), Gaps = 4/106 (3%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS- 67
S R LRV E ++ L ++L E +D I ++++I+ + + DL+ A VY + LD S
Sbjct: 3 SHRILRVNENIKQILSTILLR-EIEDPRIKNNLVTITRIDTAKDLKEAKVYF-VCLDPSK 60
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKL 113
+ V++ LN I + + L +RYVP L F YD +L K+
Sbjct: 61 QNEVLNGLNSAKGVIFSYLRKQL-TIRYVPNLTFYYDKTLMETNKV 105
>gi|86607701|ref|YP_476463.1| ribosome-binding factor A [Synechococcus sp. JA-2-3B'a(2-13)]
gi|123504067|sp|Q2JPS6|RBFA_SYNJB RecName: Full=Ribosome-binding factor A
gi|86556243|gb|ABD01200.1| ribosome-binding factor A [Synechococcus sp. JA-2-3B'a(2-13)]
Length = 144
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 62/111 (55%), Gaps = 3/111 (2%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD-V 66
+RR RV E ++ + ++L+ E +D + ++SI +V +S DL+ A +++S+ D
Sbjct: 3 TARRVARVAELIKREVSQILLS-EIKDDRVGAGMVSIVDVEVSNDLQNARIFVSIYGDET 61
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ + + L F+R IG+ L +LR VP + F D SL+ ++ AL+
Sbjct: 62 AQHQAMEGLAAATPFVRREIGQRL-SLRRVPTVVFLQDRSLERGSRVLALL 111
>gi|317504480|ref|ZP_07962458.1| ribosome-binding factor A [Prevotella salivae DSM 15606]
gi|315664423|gb|EFV04112.1| ribosome-binding factor A [Prevotella salivae DSM 15606]
Length = 111
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 33 QDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRN 92
Q R + ++S++ V +S DL + T Y+S+ + ++ + N K IR +G +RN
Sbjct: 24 QTRQMHGVMVSVTRVKISPDLSICTAYLSIFPSEKSEEILKNVTANTKTIRYDLGCRVRN 83
Query: 93 -LRYVPELRFRYDTSLQSYWKLNALM 117
LR +PELRF D SL +++ L+
Sbjct: 84 QLRIIPELRFFIDDSLDYIERIDELL 109
>gi|313901528|ref|ZP_07834974.1| ribosome-binding factor A [Thermaerobacter subterraneus DSM 13965]
gi|313468206|gb|EFR63674.1| ribosome-binding factor A [Thermaerobacter subterraneus DSM 13965]
Length = 139
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 56/100 (56%), Gaps = 6/100 (6%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS 67
+++R RV + ++ AL ++ +D + + +++ V +S DLR A V IS+ D +
Sbjct: 8 SAKRHQRVADAIQEALAEIL--RRVKDPRVG--MAAVTGVELSPDLRHARVRISVIGDEA 63
Query: 68 P-DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTS 106
R + L FIR +GR++R LR+VPEL FR D S
Sbjct: 64 ERQRTMEGLEHARGFIRSELGRAVR-LRHVPELDFRLDDS 102
>gi|300725871|ref|ZP_07059335.1| ribosome-binding factor A [Prevotella bryantii B14]
gi|299776859|gb|EFI73405.1| ribosome-binding factor A [Prevotella bryantii B14]
Length = 111
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 41 VISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSL-RNLRYVPEL 99
++S++ V +S DL + T Y+S+ + +++ +N N K IR +G+ + + LR VPEL
Sbjct: 32 MVSVTRVKVSPDLGICTAYLSIFPSEKGEELMANINSNEKSIRYELGKRVGKQLRIVPEL 91
Query: 100 RFRYDTSLQSYWKLNALM 117
RF D SL +++ L+
Sbjct: 92 RFFIDDSLDYIERIDELL 109
>gi|302389794|ref|YP_003825615.1| ribosome-binding factor A [Thermosediminibacter oceani DSM 16646]
gi|302200422|gb|ADL07992.1| ribosome-binding factor A [Thermosediminibacter oceani DSM 16646]
Length = 119
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 65/110 (59%), Gaps = 8/110 (7%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
R RV E++ A+ +I NN+ +D I + +IS+++V +S DLR A +++S+ + S +
Sbjct: 5 RTDRVSGEIKKAVSEII-NNDLKDPRI-QGLISVTKVEVSKDLRHAKIFLSIYGEESVKQ 62
Query: 71 VISALNCNIKFIRGRIGRSLRN---LRYVPELRFRYDTSLQSYWKLNALM 117
+AL IK G I R L N L+++P+L F+ D S++ ++ L+
Sbjct: 63 --NALEG-IKNAEGFIRRELANRIRLKFIPQLNFKLDDSIEYGIHISKLL 109
>gi|115466270|ref|NP_001056734.1| Os06g0137600 [Oryza sativa Japonica Group]
gi|55296456|dbj|BAD68652.1| ribosome-binding factor A protein-like [Oryza sativa Japonica
Group]
gi|55296997|dbj|BAD68472.1| ribosome-binding factor A protein-like [Oryza sativa Japonica
Group]
gi|113594774|dbj|BAF18648.1| Os06g0137600 [Oryza sativa Japonica Group]
gi|125553968|gb|EAY99573.1| hypothetical protein OsI_21548 [Oryza sativa Indica Group]
gi|125595983|gb|EAZ35763.1| hypothetical protein OsJ_20053 [Oryza sativa Japonica Group]
gi|215701451|dbj|BAG92875.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215704652|dbj|BAG94280.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765427|dbj|BAG87124.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 209
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 49/78 (62%), Gaps = 2/78 (2%)
Query: 41 VISISEVCMSVDLRVATVYISLPLDVSPDRV-ISALNCNIKFIRGRIGRSLRNLRYVPEL 99
+ +I++V +S DL+V VY+S+ D +V I+ L K++R +IG+ ++ LR PE+
Sbjct: 87 LTTIADVELSNDLQVCKVYVSVFGDERGKKVAIAGLKAKTKYVRSQIGKRMK-LRLTPEI 145
Query: 100 RFRYDTSLQSYWKLNALM 117
RF D S++ ++ A++
Sbjct: 146 RFIEDESMERGSRILAIL 163
>gi|169827170|ref|YP_001697328.1| ribosome-binding factor A [Lysinibacillus sphaericus C3-41]
gi|168991658|gb|ACA39198.1| Ribosome-binding factor A [Lysinibacillus sphaericus C3-41]
Length = 113
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 62/110 (56%), Gaps = 5/110 (4%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI-SLPLDVS 67
S R+ RV E+++ L IL + +D + ++++ V ++ DL+ AT+YI SL +
Sbjct: 2 SLRSNRVAEQMKKEL-GDILGRKIKDPRVG--FVTVTGVEVTGDLQQATIYITSLGNERE 58
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ + AL FIR IG +R LR PEL F +D+S++ +++ L+
Sbjct: 59 REETLKALVKASGFIRSEIGSRIR-LRRTPELIFEFDSSIEYGNRIDTLL 107
>gi|325286200|ref|YP_004261990.1| Ribosome-binding factor A [Cellulophaga lytica DSM 7489]
gi|324321654|gb|ADY29119.1| Ribosome-binding factor A [Cellulophaga lytica DSM 7489]
Length = 130
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Query: 41 VISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRN-LRYVPEL 99
+IS+S+V ++ DL +A VYIS+ + D ++ + N I+ + + +N LR VPEL
Sbjct: 34 LISVSKVVVTTDLSIAKVYISIFPHKNADELLEGIKSNQPLIKHELAQRTKNQLRRVPEL 93
Query: 100 RFRYDTSLQ 108
F D SL+
Sbjct: 94 LFFIDDSLE 102
>gi|28871623|ref|NP_794242.1| ribosome-binding factor A [Pseudomonas syringae pv. tomato str.
DC3000]
gi|213966646|ref|ZP_03394797.1| ribosome-binding factor A [Pseudomonas syringae pv. tomato T1]
gi|301383156|ref|ZP_07231574.1| ribosome-binding factor A [Pseudomonas syringae pv. tomato Max13]
gi|302063409|ref|ZP_07254950.1| ribosome-binding factor A [Pseudomonas syringae pv. tomato K40]
gi|302133782|ref|ZP_07259772.1| ribosome-binding factor A [Pseudomonas syringae pv. tomato NCPPB
1108]
gi|32171593|sp|Q87WQ6|RBFA_PSESM RecName: Full=Ribosome-binding factor A
gi|28854875|gb|AAO57937.1| ribosome-binding factor A [Pseudomonas syringae pv. tomato str.
DC3000]
gi|213928496|gb|EEB62040.1| ribosome-binding factor A [Pseudomonas syringae pv. tomato T1]
gi|330963976|gb|EGH64236.1| ribosome-binding factor A [Pseudomonas syringae pv. actinidiae str.
M302091]
gi|331016649|gb|EGH96705.1| ribosome-binding factor A [Pseudomonas syringae pv. lachrymans str.
M302278PT]
Length = 138
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 63/114 (55%), Gaps = 7/114 (6%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLD 65
K R R+G++++ L +I E +D + +++I+ V +S D+ A ++++ + D
Sbjct: 3 KEYSRTQRIGDQMQRELAQLI-RREIKDPRVG--LVTITAVDVSRDVGHAKIFMTVMGQD 59
Query: 66 VSPD--RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ D + I LN F+R ++ R ++ LR VP+L F YD S+ L+AL+
Sbjct: 60 NAEDIAQTIKVLNAAAGFLRMQLAREMK-LRSVPQLHFHYDESVVRGAHLSALI 112
>gi|260775408|ref|ZP_05884305.1| ribosome-binding factor A [Vibrio coralliilyticus ATCC BAA-450]
gi|260608589|gb|EEX34754.1| ribosome-binding factor A [Vibrio coralliilyticus ATCC BAA-450]
Length = 137
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 63/114 (55%), Gaps = 6/114 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL- 64
K R RV ++++ L +IL E +D + +++IS+V +S DL A V+++
Sbjct: 2 SKEFSRTQRVSQQLQKEL-AMILQREVRDSRLG--MVTISDVEVSRDLAYAKVFVTFLCV 58
Query: 65 -DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ +P+ + AL + IR +G+ +R LR PE+RF YD +L +++ L+
Sbjct: 59 GEQTPESCLKALREHEVHIRMMLGKRIR-LRLTPEIRFEYDNTLVEGMRMSNLV 111
>gi|85712991|ref|ZP_01044029.1| ribosome-binding factor A [Idiomarina baltica OS145]
gi|85693160|gb|EAQ31120.1| ribosome-binding factor A [Idiomarina baltica OS145]
Length = 125
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 61/107 (57%), Gaps = 10/107 (9%)
Query: 17 EEVRSAL---MWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRV-- 71
E VR L + +IL E +D +S ++++S+V +S DL A V+++ D D+V
Sbjct: 9 ERVRHQLQREIAMILQREVKDPRVS--MVTVSDVEVSRDLAYAKVFVTFLHD-DDDQVKA 65
Query: 72 -ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ LN FIR +G+ ++ R VPEL+F++D SL +++ L+
Sbjct: 66 GLKVLNQASGFIRSLLGKRIK-ARVVPELKFQHDGSLNEGIRMSRLV 111
>gi|330807484|ref|YP_004351946.1| ribosome-binding factor A; RBFA, ribosome-binding factor A
superfamily [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|327375592|gb|AEA66942.1| ribosome-binding factor A; RBFA, Ribosome-binding factor A
superfamily [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
Length = 133
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 62/114 (54%), Gaps = 7/114 (6%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
K R R+G++++ L +I E +D + +++I+ V +S D+ A ++I++
Sbjct: 3 KEYSRTQRIGDQMQRELAQLI-RREVKDPRVG--LVTITAVEVSRDVGHAKIFITVMGQD 59
Query: 67 SPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
S + + I LN F+R ++ R ++ LR VP+L F YD S+ L+AL+
Sbjct: 60 SAEEIAQSIKVLNSAAGFLRMQLAREMK-LRSVPQLHFHYDESVVRGAHLSALI 112
>gi|157828480|ref|YP_001494722.1| ribosome-binding factor A [Rickettsia rickettsii str. 'Sheila
Smith']
gi|165933198|ref|YP_001649987.1| ribosome-binding factor A [Rickettsia rickettsii str. Iowa]
gi|166219401|sp|A8GS39|RBFA_RICRS RecName: Full=Ribosome-binding factor A
gi|189039553|sp|B0BXK5|RBFA_RICRO RecName: Full=Ribosome-binding factor A
gi|157800961|gb|ABV76214.1| ribosome-binding factor A [Rickettsia rickettsii str. 'Sheila
Smith']
gi|165908285|gb|ABY72581.1| hypothetical protein RrIowa_0723 [Rickettsia rickettsii str. Iowa]
Length = 120
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 62/119 (52%), Gaps = 4/119 (3%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
MK +S R ++ + AL+ ++ + D + ++I++V ++ DL++A Y
Sbjct: 1 MKKLTKTHSHRQQKLASIINEALIEILRRGKMLDSRLFDCPLTITKVIVTTDLKIANCYF 60
Query: 61 SLPLD--VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
LP + ++ D ++ ALN + IR I + ++++ P++RF YD + K+ L+
Sbjct: 61 -LPFNTKLTIDEIMDALNNSKNAIRNFITNKI-HMKFSPDIRFHYDHGFDNAIKVAHLL 117
>gi|157803804|ref|YP_001492353.1| ribosome-binding factor A [Rickettsia canadensis str. McKiel]
gi|157785067|gb|ABV73568.1| ribosome-binding factor A [Rickettsia canadensis str. McKiel]
Length = 144
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 61/119 (51%), Gaps = 4/119 (3%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
MK N+ R ++ + L+ ++ + D + ++I++V ++ DL++A Y
Sbjct: 16 MKKLTKTNAHRQQKLASIINEVLIEILRRGKMLDIRLFNCPLAITKVIVTADLKIANCYF 75
Query: 61 SLPLD--VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
LP + ++ D ++ ALN + IR + + N+++ PE+RF YD + K+ L+
Sbjct: 76 -LPFNTKLTIDDIMDALNNSKNAIRNFVTNKI-NMKFSPEIRFHYDHGFDNAIKVEKLL 132
>gi|332981615|ref|YP_004463056.1| ribosome-binding factor A [Mahella australiensis 50-1 BON]
gi|332699293|gb|AEE96234.1| ribosome-binding factor A [Mahella australiensis 50-1 BON]
Length = 122
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 58/108 (53%), Gaps = 4/108 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP-D 69
R R+ EE++ + +I NE +D + + S+++V ++ DL+ A VY+S+ D
Sbjct: 5 RLARISEELKREISDII-RNELKDPRVPM-MTSVTKVEITNDLKYAKVYVSVLGDEDTVK 62
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
LN F+R +G +R LRY P++ F DTS++ ++ L+
Sbjct: 63 NAFDGLNSAAGFVRKEVGSRIR-LRYTPQIIFVRDTSIEYGAHISKLL 109
>gi|260885919|ref|ZP_05736166.2| ribosome-binding factor A [Prevotella tannerae ATCC 51259]
gi|260851001|gb|EEX70870.1| ribosome-binding factor A [Prevotella tannerae ATCC 51259]
Length = 134
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 41 VISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRN-LRYVPEL 99
++S+S V +S DL V Y+S+ + +++ +N N+K +R +G+ +R+ LR +PEL
Sbjct: 55 LVSVSRVRISPDLSVCRGYLSVFPSERGEEIVANINANVKTVRFELGKRVRHQLRIIPEL 114
Query: 100 RFRYDTSLQSYWKLNALM 117
+F D SL ++ L+
Sbjct: 115 KFFIDDSLDYIEHIDELL 132
>gi|197294653|ref|YP_001799194.1| Ribosome-binding factor A [Candidatus Phytoplasma australiense]
gi|171853980|emb|CAM11943.1| Ribosome-binding factor A [Candidatus Phytoplasma australiense]
Length = 114
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 57/104 (54%), Gaps = 9/104 (8%)
Query: 12 ALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRV 71
A R+ ++ L V++N QD I I++++V ++ DL A VY ++ D SPD +
Sbjct: 6 AERMASAIKKEL--VLINTIIQDEQIG--YINLTDVQVTKDLSFANVYYTILSD-SPDIL 60
Query: 72 ISALNC---NIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWK 112
A N N IR + + ++N R +P+L F+YD SL SY +
Sbjct: 61 KLASNAIEENKVVIRMELAKKIKNFRKIPDLIFKYDKSL-SYGR 103
>gi|123965361|ref|YP_001010442.1| ribosome-binding factor A [Prochlorococcus marinus str. MIT 9515]
gi|166219389|sp|A2BU74|RBFA_PROM5 RecName: Full=Ribosome-binding factor A
gi|123199727|gb|ABM71335.1| Ribosome-binding factor A [Prochlorococcus marinus str. MIT 9515]
Length = 132
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 52/85 (61%), Gaps = 2/85 (2%)
Query: 24 MWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR-VISALNCNIKFI 82
+ +IL N+ ++ L+ + ISIS++ ++ DL+ +YIS + + + +I LN +I
Sbjct: 18 ITLILQNDLENDLLRSNFISISKIEVTGDLQFCKIYISSAAEGNIRKEIIENLNLAKNYI 77
Query: 83 RGRIGRSLRNLRYVPELRFRYDTSL 107
+ +G+ + +R VPEL F+ DT+L
Sbjct: 78 KHILGQRIE-MRRVPELTFKDDTAL 101
>gi|77457007|ref|YP_346512.1| ribosome-binding factor A [Pseudomonas fluorescens Pf0-1]
gi|123606004|sp|Q3KI83|RBFA_PSEPF RecName: Full=Ribosome-binding factor A
gi|77381010|gb|ABA72523.1| ribosome-binding factor A [Pseudomonas fluorescens Pf0-1]
Length = 133
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 63/114 (55%), Gaps = 7/114 (6%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLD 65
K R R+G++++ L +I E +D + +++I+ V +S D+ A ++I+ + D
Sbjct: 3 KEYSRTQRIGDQMQRELAQLI-RREVKDPRVG--LVTITAVEVSRDVGHAKIFITVMGQD 59
Query: 66 VSPD--RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ D + I LN F+R ++ R ++ LR VP+L F YD S+ L+AL+
Sbjct: 60 NAEDIAQSIKVLNAAAGFLRMQLAREMK-LRSVPQLHFHYDESVVRGAHLSALI 112
>gi|317046742|ref|YP_004114390.1| ribosome-binding factor A [Pantoea sp. At-9b]
gi|316948359|gb|ADU67834.1| ribosome-binding factor A [Pantoea sp. At-9b]
Length = 135
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 62/115 (53%), Gaps = 6/115 (5%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
K R RV +E++ + +IL E +D + ++++S V +S DL A V+++ D
Sbjct: 3 KEFGRPQRVSQELQKEI-AIILQREIKDPRLGM-MVTVSGVEVSRDLAYAKVFVTFLNDK 60
Query: 67 SPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ V + AL +IR +G+++R LR VPEL F YD SL +++ L+
Sbjct: 61 DEEAVKNGLKALKEASGYIRTLVGKAMR-LRIVPELTFFYDNSLIEGMRMSNLVT 114
>gi|223936319|ref|ZP_03628231.1| ribosome-binding factor A [bacterium Ellin514]
gi|223894837|gb|EEF61286.1| ribosome-binding factor A [bacterium Ellin514]
Length = 125
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 44/74 (59%), Gaps = 2/74 (2%)
Query: 41 VISISEVCMSVDLRVATVYIS-LPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPEL 99
+I+++EV +S DL ATV+I L D + + LN + K I+G +G+++ L+Y P L
Sbjct: 32 LITVNEVGVSSDLHSATVFIGILGTDQQKKKGFAQLNHHRKRIQGLVGQAVI-LKYTPTL 90
Query: 100 RFRYDTSLQSYWKL 113
RF D S+ K+
Sbjct: 91 RFVLDESIAEGNKV 104
>gi|330958048|gb|EGH58308.1| ribosome-binding factor A [Pseudomonas syringae pv. maculicola str.
ES4326]
Length = 138
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 63/114 (55%), Gaps = 7/114 (6%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLD 65
K R R+G++++ L +I E +D + +++I+ V +S D+ A ++++ + D
Sbjct: 3 KEYSRTQRIGDQMQRELAQLI-RREIKDPRVG--LVTITAVDVSRDVGHAKIFMTVMGQD 59
Query: 66 VSPD--RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ D + I LN F+R ++ R ++ LR VP+L F YD S+ L+AL+
Sbjct: 60 NAEDIAQTIKVLNAAAGFLRMQLAREMK-LRSVPQLHFHYDESVVRGAHLSALI 112
>gi|88802041|ref|ZP_01117569.1| putative ribosome-binding factor A [Polaribacter irgensii 23-P]
gi|88782699|gb|EAR13876.1| putative ribosome-binding factor A [Polaribacter irgensii 23-P]
Length = 131
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 41 VISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRN-LRYVPEL 99
+IS+S+V ++ DL VA VY+S+ + D ++ + N IR + + RN LR +PEL
Sbjct: 34 IISVSKVHVTADLGVAKVYLSIFPSENRDEIVKGVQSNTPLIRHEMAKRTRNQLRRMPEL 93
Query: 100 RFRYDTSL 107
F D +L
Sbjct: 94 LFFGDDTL 101
>gi|258591352|emb|CBE67651.1| Ribosome-binding factor A [NC10 bacterium 'Dutch sediment']
Length = 119
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 56/113 (49%), Gaps = 8/113 (7%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS 67
RRA RVG ++ + +IL + R+ +++ V +S DL+ A VYI+ +
Sbjct: 2 QGRRADRVGTLIQEEISRLILQSVKDPRV---RCATVTRVRVSDDLQHAKVYIA-SMGGD 57
Query: 68 PDRVISAL---NCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+R AL F+RG +GR L LRY+PEL F D SL+ L L
Sbjct: 58 KERCQEALIGLKSAAGFLRGELGRRL-CLRYIPELLFSLDDSLEQELHLAELF 109
>gi|254496142|ref|ZP_05109040.1| ribosome-binding factor A [Legionella drancourtii LLAP12]
gi|254354629|gb|EET13266.1| ribosome-binding factor A [Legionella drancourtii LLAP12]
Length = 123
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 61/113 (53%), Gaps = 8/113 (7%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
+N +R R+ E ++ L +I RL ++IS V ++ DL A +Y ++ +
Sbjct: 3 QNFKRTDRIAEMIQRKLAQIIPQEVKDPRL--NGFVTISAVKVAADLGHAKIYFTV---L 57
Query: 67 SPDRVISA--LNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ D+ ++A LN ++R + RS+ LR VP+L F YD S++ +L+ L+
Sbjct: 58 NADKKLAATILNAAASYLRSALARSI-TLRTVPQLHFIYDESIEYGQRLSRLI 109
>gi|294101961|ref|YP_003553819.1| ribosome-binding factor A [Aminobacterium colombiense DSM 12261]
gi|293616941|gb|ADE57095.1| ribosome-binding factor A [Aminobacterium colombiense DSM 12261]
Length = 130
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 50/82 (60%), Gaps = 4/82 (4%)
Query: 37 ISRDVISISEVCMSVDLRVATVYISLPLDVSPDR-VISALNCNIKFIRGRIGRSLRNLRY 95
+++D I I+EV S DL VATV+ + LD + V+ AL IR +G+ LR LR
Sbjct: 29 VAKDAI-ITEVSCSKDLEVATVFF-VTLDQKQRKAVLKALESVAGPIRSLLGKRLR-LRQ 85
Query: 96 VPELRFRYDTSLQSYWKLNALM 117
+PE+RF D+S+ +++AL+
Sbjct: 86 IPEIRFEIDSSVDYGRRIDALL 107
>gi|253580819|ref|ZP_04858082.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251847889|gb|EES75856.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 131
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 59/112 (52%), Gaps = 4/112 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLD 65
KNS + R+ EV+ L I+ NE +D I + S+ V ++ DL+ YIS L
Sbjct: 3 KNSIKNTRINGEVQKEL-STIIRNEIKDPRI-HPMTSVMAVEVAPDLKTCRAYISVLGEK 60
Query: 66 VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ + I LN +IR ++ R+L NLR PE+RF D S++ ++ L+
Sbjct: 61 EAKEATIKGLNSAEGYIRRQLARNL-NLRNTPEIRFILDESIEYGVNMSKLI 111
>gi|150003447|ref|YP_001298191.1| ribosome-binding factor A [Bacteroides vulgatus ATCC 8482]
gi|212695394|ref|ZP_03303522.1| hypothetical protein BACDOR_04943 [Bacteroides dorei DSM 17855]
gi|237711569|ref|ZP_04542050.1| ribosome-binding factor A [Bacteroides sp. 9_1_42FAA]
gi|254881255|ref|ZP_05253965.1| ribosome-binding factor A [Bacteroides sp. 4_3_47FAA]
gi|265752997|ref|ZP_06088566.1| ribosome-binding factor A [Bacteroides sp. 3_1_33FAA]
gi|294777671|ref|ZP_06743122.1| ribosome-binding factor A [Bacteroides vulgatus PC510]
gi|319640257|ref|ZP_07994982.1| ribosome-binding factor A [Bacteroides sp. 3_1_40A]
gi|149931871|gb|ABR38569.1| ribosome-binding factor A [Bacteroides vulgatus ATCC 8482]
gi|212662029|gb|EEB22603.1| hypothetical protein BACDOR_04943 [Bacteroides dorei DSM 17855]
gi|229454264|gb|EEO59985.1| ribosome-binding factor A [Bacteroides sp. 9_1_42FAA]
gi|254834048|gb|EET14357.1| ribosome-binding factor A [Bacteroides sp. 4_3_47FAA]
gi|263236183|gb|EEZ21678.1| ribosome-binding factor A [Bacteroides sp. 3_1_33FAA]
gi|294448739|gb|EFG17288.1| ribosome-binding factor A [Bacteroides vulgatus PC510]
gi|317388032|gb|EFV68886.1| ribosome-binding factor A [Bacteroides sp. 3_1_40A]
Length = 111
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 41 VISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRN-LRYVPEL 99
++S+S V +S D+ +A VY+S+ ++ +N N+K IR +G +R+ LR +PEL
Sbjct: 32 LVSVSAVRISPDMSIARVYLSVFPSERSQEIVKNINDNMKSIRYELGTRVRHQLRIIPEL 91
Query: 100 RFRYDTSLQSYWKLNALM 117
+F D SL +++ L+
Sbjct: 92 KFFVDDSLDYAERIDELL 109
>gi|189424729|ref|YP_001951906.1| ribosome-binding factor A [Geobacter lovleyi SZ]
gi|259552000|sp|B3EAE8|RBFA_GEOLS RecName: Full=Ribosome-binding factor A
gi|189420988|gb|ACD95386.1| ribosome-binding factor A [Geobacter lovleyi SZ]
Length = 123
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 61/109 (55%), Gaps = 5/109 (4%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPD 69
+R+ +V E + + + IL+ D I ++I+ V ++ DL +A ++ ++ D +
Sbjct: 4 KRSDKVAETIHTTI-STILSRGLNDPRIG--FVTITGVEVTDDLHLARIFFTVIGDEAAK 60
Query: 70 RVISA-LNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ A LN +FIR +G+ L+ +RY P++ F+YD S + +++ L+
Sbjct: 61 KSSEAGLNSAARFIRHELGKVLK-MRYTPDILFKYDHSQEYGQRIDDLL 108
>gi|172045663|sp|A8EYY5|RBFA_RICCK RecName: Full=Ribosome-binding factor A
Length = 129
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 61/119 (51%), Gaps = 4/119 (3%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
MK N+ R ++ + L+ ++ + D + ++I++V ++ DL++A Y
Sbjct: 1 MKKLTKTNAHRQQKLASIINEVLIEILRRGKMLDIRLFNCPLAITKVIVTADLKIANCYF 60
Query: 61 SLPLD--VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
LP + ++ D ++ ALN + IR + + N+++ PE+RF YD + K+ L+
Sbjct: 61 -LPFNTKLTIDDIMDALNNSKNAIRNFVTNKI-NMKFSPEIRFHYDHGFDNAIKVEKLL 117
>gi|269797848|ref|YP_003311748.1| ribosome-binding factor A [Veillonella parvula DSM 2008]
gi|269094477|gb|ACZ24468.1| ribosome-binding factor A [Veillonella parvula DSM 2008]
Length = 118
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 43 SISEVCMSVDLRVATVYISL-PLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRF 101
+I++V ++ DLR AT+Y+SL D + AL IR +G+ L+ LR++P + F
Sbjct: 34 TITDVHVTGDLREATIYVSLFGSDKEKQDTLIALKHAAGHIRTELGKVLK-LRHIPSITF 92
Query: 102 RYDTSLQSYWKLNALM 117
DTSL + +L+
Sbjct: 93 DKDTSLDYSMHIESLL 108
>gi|291616011|ref|YP_003518753.1| RbfA [Pantoea ananatis LMG 20103]
gi|291151041|gb|ADD75625.1| RbfA [Pantoea ananatis LMG 20103]
gi|327396262|dbj|BAK13684.1| ribosome-binding factor A RbfA [Pantoea ananatis AJ13355]
Length = 140
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 63/118 (53%), Gaps = 6/118 (5%)
Query: 4 KNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP 63
K K R RV +E++ + +IL E +D + ++++S V +S DL A V+++
Sbjct: 5 KMAKEFGRPQRVSQELQKEI-AMILQREIKDPRLGM-MVTVSGVEVSRDLAYAKVFVTFL 62
Query: 64 LDVSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
D + V + AL +IR +G+++R LR VPEL F YD SL +++ L+
Sbjct: 63 NDKDEEAVQNGLKALKEASGYIRTLLGKAMR-LRIVPELTFFYDNSLIEGMRMSNLVT 119
>gi|156975662|ref|YP_001446569.1| ribosome-binding factor A [Vibrio harveyi ATCC BAA-1116]
gi|156527256|gb|ABU72342.1| hypothetical protein VIBHAR_03395 [Vibrio harveyi ATCC BAA-1116]
Length = 137
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 63/113 (55%), Gaps = 6/113 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL- 64
K R RV ++++ L +IL E +D + +++IS+V +S DL A V+++
Sbjct: 4 SKEFSRTQRVSQQLQKEL-AMILQREVRDSRLG--MVTISDVEVSRDLAYAKVFVTFLCV 60
Query: 65 -DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNAL 116
+ +P+ ++AL + IR +G+ +R LR PE+RF YD +L +++ L
Sbjct: 61 GEQTPESCLAALREHEVHIRMMLGKRIR-LRLTPEIRFYYDNTLVEGMRMSNL 112
>gi|154497686|ref|ZP_02036064.1| hypothetical protein BACCAP_01662 [Bacteroides capillosus ATCC
29799]
gi|150273184|gb|EDN00329.1| hypothetical protein BACCAP_01662 [Bacteroides capillosus ATCC
29799]
Length = 129
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 62/115 (53%), Gaps = 6/115 (5%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
S R R+ EE++ L +I +D + ++SI+ V + DLR A +++S+ LD S
Sbjct: 3 SNRIGRINEEIQRELSGLI--RTVKDPRV-HGLVSITAVDTTTDLRYAKIHVSV-LDKSD 58
Query: 69 -DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
+ V+ L ++R +G +L +LRY PEL F D S+ + +++ P++
Sbjct: 59 VNEVVKGLKSAAGYLRRELGAAL-SLRYTPELIFEKDDSMAQGAHILSMLRDPEV 112
>gi|188587938|ref|YP_001920619.1| ribosome-binding factor A [Clostridium botulinum E3 str. Alaska
E43]
gi|251781062|ref|ZP_04823982.1| ribosome-binding factor A [Clostridium botulinum E1 str. 'BoNT E
Beluga']
gi|238689677|sp|B2V4H0|RBFA_CLOBA RecName: Full=Ribosome-binding factor A
gi|188498219|gb|ACD51355.1| ribosome-binding factor A [Clostridium botulinum E3 str. Alaska
E43]
gi|243085377|gb|EES51267.1| ribosome-binding factor A [Clostridium botulinum E1 str. 'BoNT E
Beluga']
Length = 116
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 61/110 (55%), Gaps = 7/110 (6%)
Query: 11 RALRVGEEVRSALMWVILNNEFQD-RLISRDVISISEVCMSVDLRVATVYISLPLDVSPD 69
R R+ EE + + +I NE +D RL + +IS+++V ++ DLR A VY+S+ +
Sbjct: 5 RGGRINEEFKREISNII-QNEIKDPRLTA--MISVTDVKVTKDLRYAKVYVSIFSTKEEE 61
Query: 70 RV--ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ +AL FIR +G+ + N+R+ PE+ F D S+ ++ L+
Sbjct: 62 KKDNFTALKSASGFIRKILGQRI-NVRHNPEILFELDDSINYAMHIDELI 110
>gi|153835029|ref|ZP_01987696.1| ribosome-binding factor A [Vibrio harveyi HY01]
gi|269961981|ref|ZP_06176336.1| ribosome-binding factor A [Vibrio harveyi 1DA3]
gi|172044101|sp|A7MZI4|RBFA_VIBHB RecName: Full=Ribosome-binding factor A
gi|148868506|gb|EDL67605.1| ribosome-binding factor A [Vibrio harveyi HY01]
gi|269833304|gb|EEZ87408.1| ribosome-binding factor A [Vibrio harveyi 1DA3]
Length = 135
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 64/114 (56%), Gaps = 6/114 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL- 64
K R RV ++++ L +IL E +D + +++IS+V +S DL A V+++
Sbjct: 2 SKEFSRTQRVSQQLQKEL-AMILQREVRDSRLG--MVTISDVEVSRDLAYAKVFVTFLCV 58
Query: 65 -DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ +P+ ++AL + IR +G+ +R LR PE+RF YD +L +++ L+
Sbjct: 59 GEQTPESCLAALREHEVHIRMMLGKRIR-LRLTPEIRFYYDNTLVEGMRMSNLV 111
>gi|303236415|ref|ZP_07323004.1| ribosome-binding factor A [Prevotella disiens FB035-09AN]
gi|302483387|gb|EFL46393.1| ribosome-binding factor A [Prevotella disiens FB035-09AN]
Length = 111
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 33 QDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRN 92
Q R + ++S++ +S DL + T Y+S+ + ++ +N N K IR +G+ + N
Sbjct: 24 QTRAMHGVLVSVTRAKVSPDLGICTAYLSIFPSEKSEELLENINKNEKSIRFELGQRVHN 83
Query: 93 -LRYVPELRFRYDTSLQSYWKLNALM 117
LR +PELRF D SL +++ L+
Sbjct: 84 QLRIIPELRFFIDDSLDYIERIDELL 109
>gi|291460008|ref|ZP_06599398.1| ribosome-binding factor A [Oribacterium sp. oral taxon 078 str.
F0262]
gi|291417349|gb|EFE91068.1| ribosome-binding factor A [Oribacterium sp. oral taxon 078 str.
F0262]
Length = 139
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 62/112 (55%), Gaps = 4/112 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLD 65
K S + R E+VR L +++ +E +D +S + +I+ V ++ DL+ VY+S L +
Sbjct: 3 KQSFKYQRRNEDVRRQL-SLLVRDELKDARVS-PMTNITGVDLTPDLQYCKVYVSALGGE 60
Query: 66 VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
D+ + L F+R + RSL NLR+ PEL F D S + +++AL+
Sbjct: 61 EVLDKTMEGLRAASGFLRRELARSL-NLRHTPELSFVADRSAEYGSRMDALI 111
>gi|42523055|ref|NP_968435.1| hypothetical protein Bd1548 [Bdellovibrio bacteriovorus HD100]
gi|61215037|sp|Q6MMS5|RBFA_BDEBA RecName: Full=Ribosome-binding factor A
gi|39575260|emb|CAE79428.1| unnamed protein product [Bdellovibrio bacteriovorus HD100]
Length = 134
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 58/115 (50%), Gaps = 5/115 (4%)
Query: 4 KNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP 63
KN + RR RV E+++ + ++ F+ L +++++ V M DLR A VY+S+
Sbjct: 2 KNMGDGRRIARVEREIQATIAQFLIRG-FKTPLPG--LVTVASVKMPADLRAAKVYVSIL 58
Query: 64 LDV-SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
D D + L I+ IG+ L+ +RY P+L F D + + K+ ++
Sbjct: 59 GDEKQQDEALDLLQERAFEIQNYIGKELK-MRYCPKLTFYLDHATEQVLKVEKIL 112
>gi|34580479|ref|ZP_00141959.1| ribosome-binding factor A [Rickettsia sibirica 246]
gi|28261864|gb|EAA25368.1| ribosome-binding factor A [Rickettsia sibirica 246]
Length = 120
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 61/119 (51%), Gaps = 4/119 (3%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
MK +S R ++ + L+ ++ + D + ++I++V ++ DL++A Y
Sbjct: 1 MKKLTKTHSHRQQKLASIINEVLIEILRRGKMLDTRLFDCPLTITKVIVTADLKIANCYF 60
Query: 61 SLPLD--VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
LP + ++ D ++ ALN + IR I + N+++ P++RF YD + K+ L+
Sbjct: 61 -LPFNTKLTIDEIMDALNNSKNAIRNFITNKI-NMKFSPDIRFHYDHGFDNAIKVAHLL 117
>gi|237798564|ref|ZP_04587025.1| ribosome-binding factor A [Pseudomonas syringae pv. oryzae str.
1_6]
gi|331021417|gb|EGI01474.1| ribosome-binding factor A [Pseudomonas syringae pv. oryzae str.
1_6]
Length = 138
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 63/114 (55%), Gaps = 7/114 (6%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLD 65
K R R+G++++ L +I E +D + +++I+ V +S D+ A ++++ + D
Sbjct: 3 KEYSRTQRIGDQMQRELAQLI-RREIKDPRVG--LVTITAVDVSRDVGHAKIFMTVMGQD 59
Query: 66 VSPD--RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ D + I LN F+R ++ R ++ LR VP+L F YD S+ L+AL+
Sbjct: 60 NAEDIAQTIKVLNSAAGFLRMQLAREMK-LRSVPQLHFHYDESVVRGAHLSALI 112
>gi|149926270|ref|ZP_01914532.1| ribosome-binding factor A [Limnobacter sp. MED105]
gi|149825088|gb|EDM84300.1| ribosome-binding factor A [Limnobacter sp. MED105]
Length = 134
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 61/108 (56%), Gaps = 6/108 (5%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
M++K K R +RV E+++ L +I E +D + ++I++V ++ D ATVY
Sbjct: 1 MRHKK-KAPARGIRVAEQIQKDLAELI-PRELRDPRLG--FVTITDVELTPDYAYATVYF 56
Query: 61 SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
S+ L S + ALN + ++R I + L ++ VP LRF++D S++
Sbjct: 57 SV-LTGSAETTEEALNDSSGYLRNLIFKKL-HIHTVPTLRFKHDQSVE 102
>gi|330981091|gb|EGH79194.1| ribosome-binding factor A [Pseudomonas syringae pv. aptata str. DSM
50252]
Length = 138
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 62/114 (54%), Gaps = 7/114 (6%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
K R R+G++++ L +I E +D + +++I+ V +S D+ A +++++
Sbjct: 3 KKYSRTQRIGDQMQRELAQLI-RREIKDPRVG--LVTITAVDVSRDVGHAKIFMTVMGQD 59
Query: 67 SPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
S + + I LN F+R ++ R ++ LR VP+L F YD S+ L+AL+
Sbjct: 60 SAEEIAQTIKVLNAAAGFLRMQLAREMK-LRSVPQLHFHYDESVVRGAHLSALI 112
>gi|29840225|ref|NP_829331.1| ribosome-binding factor A [Chlamydophila caviae GPIC]
gi|33301499|sp|Q823F3|RBFA_CHLCV RecName: Full=Ribosome-binding factor A
gi|29834573|gb|AAP05209.1| ribosome-binding factor A [Chlamydophila caviae GPIC]
Length = 120
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 51/94 (54%), Gaps = 3/94 (3%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVS 67
+RR +V +R A+ VIL + + IS I+++ VC+S DL A VY+S +P + +
Sbjct: 4 NRRIKKVNSLLREAIANVILKDVKHPK-ISNQWITVTRVCLSKDLHSARVYVSIMPHENT 62
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRF 101
+ AL + FI + + + L+Y PE+ F
Sbjct: 63 SAETLDALKASAGFIAYKASKGVV-LKYFPEIHF 95
>gi|308272449|emb|CBX29053.1| Ribosome-binding factor A [uncultured Desulfobacterium sp.]
Length = 119
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 5/97 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD-VSPD 69
RA RVG +++ L +L RL ++ +I+ V MS DL++A +Y + + D
Sbjct: 6 RAERVGGQIQKVLSGALLKGIKDPRL---EMTTITAVKMSKDLKIARIYFTTTGGKTNAD 62
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTS 106
F++ + L LRY+PEL F YD S
Sbjct: 63 EAAKGFKSAAGFLKRSLSSEL-TLRYMPELIFFYDES 98
>gi|91774424|ref|YP_544180.1| ribosome-binding factor A [Methylobacillus flagellatus KT]
gi|122399242|sp|Q1GXD5|RBFA_METFK RecName: Full=Ribosome-binding factor A
gi|91708411|gb|ABE48339.1| ribosome-binding factor A [Methylobacillus flagellatus KT]
Length = 125
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 60/119 (50%), Gaps = 5/119 (4%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
K R+ RV E+++ L +L E +D +S +++++EV +S D+ A VY + P
Sbjct: 3 KEFSRSDRVAEQIQRELAD-LLQFEVKDPRVS-SMVTVTEVEVSGDMSHAKVYYTAPQGT 60
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
+ L F+R ++ R L LR VP+L F YD S+ ++ L+ PVA
Sbjct: 61 P--ELQKGLEKTAGFLRSQLARRLL-LRTVPQLHFVYDASIDRGMRIAKLIDEALPPVA 116
>gi|297798442|ref|XP_002867105.1| hypothetical protein ARALYDRAFT_353351 [Arabidopsis lyrata subsp.
lyrata]
gi|297312941|gb|EFH43364.1| hypothetical protein ARALYDRAFT_353351 [Arabidopsis lyrata subsp.
lyrata]
Length = 787
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 50/85 (58%), Gaps = 3/85 (3%)
Query: 34 DRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPDRVISALNCNIKFIRGRIGRSLRN 92
DR +S + +IS+V +S DL+V VY+S D D I+ L K++R +G+ ++
Sbjct: 601 DRYLSS-LTTISDVEVSNDLQVVKVYVSVFGDDRGKDVAIAGLKSKAKYVRSELGKRMK- 658
Query: 93 LRYVPELRFRYDTSLQSYWKLNALM 117
LR PE+RF D S++ ++ A++
Sbjct: 659 LRLTPEVRFIEDESMERGSRVIAIL 683
>gi|255994866|ref|ZP_05428001.1| MgpA protein [Eubacterium saphenum ATCC 49989]
gi|255993579|gb|EEU03668.1| MgpA protein [Eubacterium saphenum ATCC 49989]
Length = 458
Score = 45.1 bits (105), Expect = 0.004, Method: Composition-based stats.
Identities = 35/102 (34%), Positives = 54/102 (52%), Gaps = 9/102 (8%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRL---ISRDVISISEVCMSVDLRVATVYISLPLDV 66
+R R+ EE++ I++N F ++ I + I+I+ V +S D R A VY +
Sbjct: 5 KRKDRLAEEIKK-----IVSNAFLLKVRDPILKMAINITAVDVSPDGRNAKVYYVVFSGS 59
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
D V +AL IR I ++R +RYVP + F YDTSL+
Sbjct: 60 DKDEVAAALKKVEPLIRKEIAENMR-VRYVPNICFAYDTSLE 100
>gi|217967597|ref|YP_002353103.1| ribosome-binding factor A [Dictyoglomus turgidum DSM 6724]
gi|217336696|gb|ACK42489.1| ribosome-binding factor A [Dictyoglomus turgidum DSM 6724]
Length = 127
Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 44 ISEVCMSVDLRVATVYISL-PLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFR 102
I+ V MS DLR A +Y+S+ + + + L FIR +G+ LR +R+VPE+ F
Sbjct: 42 ITGVKMSKDLRYAHIYVSVYGSEEEKKQTMKGLESAKGFIRSELGKDLR-IRFVPEIFFE 100
Query: 103 YDTSLQ 108
D SL+
Sbjct: 101 LDDSLE 106
>gi|330877232|gb|EGH11381.1| ribosome-binding factor A [Pseudomonas syringae pv. morsprunorum
str. M302280PT]
Length = 138
Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 63/114 (55%), Gaps = 7/114 (6%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLD 65
K R R+G++++ L +I E +D + +++I+ V +S D+ A ++++ + D
Sbjct: 3 KEYSRTQRIGDQMQRELAQLI-RREIKDPRVG--LVTITAVDVSRDVGHAKIFMTVMGQD 59
Query: 66 VSPD--RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ D + I LN F+R ++ R ++ LR VP+L F YD S+ L+AL+
Sbjct: 60 NAEDIAQTIKVLNSAAGFLRMQLAREMK-LRSVPQLHFHYDESVVRGAHLSALI 112
>gi|292492787|ref|YP_003528226.1| ribosome-binding factor A [Nitrosococcus halophilus Nc4]
gi|291581382|gb|ADE15839.1| ribosome-binding factor A [Nitrosococcus halophilus Nc4]
Length = 127
Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 61/108 (56%), Gaps = 5/108 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
R R+GE ++ L +I E +D + ++++S V +S DLR A VY++ L + +
Sbjct: 7 RTRRIGELLQRELAQLI-QEELKDPRVK--LVTVSHVGVSPDLRQAKVYVTFLGGEKNIQ 63
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ ++ LN F++ + + + LR +P LRF YD S++ L+AL+
Sbjct: 64 QQLAVLNKAAGFLQHGLSQRV-ELRAIPRLRFVYDDSIERGRHLSALI 110
>gi|156741119|ref|YP_001431248.1| ribosome-binding factor A [Roseiflexus castenholzii DSM 13941]
gi|189039554|sp|A7NID0|RBFA_ROSCS RecName: Full=Ribosome-binding factor A
gi|156232447|gb|ABU57230.1| ribosome-binding factor A [Roseiflexus castenholzii DSM 13941]
Length = 130
Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 60/111 (54%), Gaps = 6/111 (5%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
S+R ++G E++ ++ IL E +D + ++ V ++ DL++A V IS+ +
Sbjct: 2 SKRTEQLGHEIQR-ILGEILQYELKDPRVG--FATVVGVEVTADLQIARVRISV-MGTPE 57
Query: 69 DR--VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+R ++AL F+R R+ L LR+VPELR DTS+ ++ L+
Sbjct: 58 ERKETMAALERAKGFLRRRLAEELNYLRFVPELRLILDTSVDYSLHIDELL 108
>gi|323144577|ref|ZP_08079166.1| ribosome-binding factor A [Succinatimonas hippei YIT 12066]
gi|322415653|gb|EFY06398.1| ribosome-binding factor A [Succinatimonas hippei YIT 12066]
Length = 119
Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 3/78 (3%)
Query: 43 SISEVCMSVDLRVATVYISLPL--DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELR 100
+++EV ++ DLR A +++S + + + LN FIR + L+ LRY+PE+
Sbjct: 36 TVTEVSVNSDLRDARIFVSFLTNDEQAVKEAMEGLNKAKGFIRSELASRLK-LRYMPEIH 94
Query: 101 FRYDTSLQSYWKLNALMC 118
F +D+ L KL+AL+
Sbjct: 95 FIFDSLLSESMKLDALIA 112
>gi|88807131|ref|ZP_01122643.1| possible Ribosome-binding factor A [Synechococcus sp. WH 7805]
gi|88788345|gb|EAR19500.1| possible Ribosome-binding factor A [Synechococcus sp. WH 7805]
Length = 140
Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 56/110 (50%), Gaps = 3/110 (2%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD-VS 67
RR RV +R ++++ +D + + +ISI+ V +S DL+ +++S+ D
Sbjct: 4 GRRVERVAALIRKETSELLIHG-IRDERVHQGLISITGVEVSGDLQHCKIFVSVLADPEG 62
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+V+ L F+RG +GR L+ +R PE+ F D L+ + L+
Sbjct: 63 KAQVMDGLQAASSFLRGELGRRLK-MRRAPEVVFHLDRGLEKGASVLGLL 111
>gi|330937948|gb|EGH41735.1| ribosome-binding factor A [Pseudomonas syringae pv. pisi str.
1704B]
Length = 138
Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 62/114 (54%), Gaps = 7/114 (6%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
K R R+G++++ L +I E +D + +++I+ V +S D+ A +++++
Sbjct: 3 KEYSRTQRIGDQMQRELAQLI-RREIKDPRVG--LVTITAVDVSRDVGHAKIFMTVMGQD 59
Query: 67 SPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
S + + I LN F+R ++ R ++ LR VP+L F YD S+ L+AL+
Sbjct: 60 SAEEIAQTIKVLNAAAGFLRMQLAREMK-LRSVPQLHFHYDESVVRGAHLSALI 112
>gi|284108778|ref|ZP_06386443.1| Ribosome-binding factor A [Candidatus Poribacteria sp. WGA-A3]
gi|283829852|gb|EFC34143.1| Ribosome-binding factor A [Candidatus Poribacteria sp. WGA-A3]
Length = 117
Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 42 ISISEVCMSVDLRVATVYIS-LPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELR 100
+++++V M+ DLR A VY+S L V + V L+ F+R +GR L LRY PE+
Sbjct: 19 VTVTDVEMNNDLRKAYVYVSLLGNQVETETVGKILDNASGFVRLELGRRLE-LRYTPEVS 77
Query: 101 FRYDTSLQSYWKLNALM 117
FR+D+ K+ ++
Sbjct: 78 FRFDSGGSRAEKIGLIL 94
>gi|330950304|gb|EGH50564.1| ribosome-binding factor A [Pseudomonas syringae Cit 7]
Length = 138
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 62/114 (54%), Gaps = 7/114 (6%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
K R R+G++++ L +I E +D + +++I+ V +S D+ A +++++
Sbjct: 3 KEYSRTQRIGDQMQRELAQLI-RREIKDPRVG--LVTITAVDVSRDVGHAKIFMTVMGQD 59
Query: 67 SPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
S + + I LN F+R ++ R ++ LR VP+L F YD S+ L+AL+
Sbjct: 60 SAEEIAQTIKVLNAAAGFLRMQLAREMK-LRSVPQLHFHYDESVVRGAHLSALI 112
>gi|90961549|ref|YP_535465.1| ribosome-binding factor A [Lactobacillus salivarius UCC118]
gi|122449169|sp|Q1WUF3|RBFA_LACS1 RecName: Full=Ribosome-binding factor A
gi|90820743|gb|ABD99382.1| Ribosome-binding factor A [Lactobacillus salivarius UCC118]
Length = 119
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 3/78 (3%)
Query: 42 ISISEVCMSVDLRVATVYISLPLDVSPD--RVISALNCNIKFIRGRIGRSLRNLRYVPEL 99
++I+ V +S DL+ AT+Y S+ D + D +V + L+ IRG +G L ++ PE+
Sbjct: 34 VTITGVEVSGDLQHATIYYSILSDKASDEKKVQTGLDKATSLIRGELGHRL-SIYVTPEI 92
Query: 100 RFRYDTSLQSYWKLNALM 117
+F D S+Q +N L+
Sbjct: 93 KFERDKSVQYGDHINELL 110
>gi|288800321|ref|ZP_06405779.1| ribosome-binding factor A [Prevotella sp. oral taxon 299 str.
F0039]
gi|288332534|gb|EFC71014.1| ribosome-binding factor A [Prevotella sp. oral taxon 299 str.
F0039]
Length = 111
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 33 QDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSL-R 91
Q R + ++S++ +S DL V T Y+S+ D ++ + N K IR +G+ + +
Sbjct: 24 QTRAMMGMMVSVTRCKVSPDLGVCTAYLSVFPSEKGDEILENIRANYKSIRFELGKKIGK 83
Query: 92 NLRYVPELRFRYDTSLQSYWKLNALMC 118
+R VPELRF D SL +++ L+
Sbjct: 84 QVRIVPELRFFIDDSLDYLERIDELLA 110
>gi|254490537|ref|ZP_05103723.1| ribosome-binding factor A [Methylophaga thiooxidans DMS010]
gi|224464281|gb|EEF80544.1| ribosome-binding factor A [Methylophaga thiooxydans DMS010]
Length = 124
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 59/118 (50%), Gaps = 10/118 (8%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS----LPLDV 66
R R GE V L ++L E D I ++++S V ++ DL+ A VY++ +
Sbjct: 7 RTNRFGEVVMREL-ALMLQREISDPRIG--MVTVSHVDVTADLKYAKVYVTRFNGFESEQ 63
Query: 67 SPDRVISALNCNIKFIR-GRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIP 123
+ LN ++R G GR LR +PEL+F YD SL++ ++++ L+ P
Sbjct: 64 DVQECLQGLNSASGYLRRGLAGRV--KLRSIPELQFVYDKSLENGFRMDELIAKANKP 119
>gi|330969653|gb|EGH69719.1| ribosome-binding factor A [Pseudomonas syringae pv. aceris str.
M302273PT]
Length = 138
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 63/114 (55%), Gaps = 7/114 (6%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLD 65
K R R+G++++ L +I E +D + +++I+ V +S D+ A ++++ + D
Sbjct: 3 KEYSRTQRIGDQMQRELAQLI-RREIKDPRVG--LVTITAVDVSRDVGHAKIFMTVMGQD 59
Query: 66 VSPD--RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
S + + I LN F+R ++ R ++ LR VP+L F YD S+ L+AL+
Sbjct: 60 SSEEIAQTIKVLNSAAGFLRMQLAREMK-LRSVPQLHFHYDESVVRGAHLSALI 112
>gi|158523043|ref|YP_001530913.1| ribosome-binding factor A [Desulfococcus oleovorans Hxd3]
gi|238686917|sp|A8ZZ63|RBFA_DESOH RecName: Full=Ribosome-binding factor A
gi|158511869|gb|ABW68836.1| ribosome-binding factor A [Desulfococcus oleovorans Hxd3]
Length = 129
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 57/114 (50%), Gaps = 9/114 (7%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
K+ RA R+G ++ + ++ RL D+ +I+ V +S DL VA VY +P D
Sbjct: 2 KSFPRADRIGSSIQRGVSEILRKGLGDPRL---DMATITGVKVSRDLGVAYVYYVIPGDT 58
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNL---RYVPELRFRYDTSLQSYWKLNALM 117
+ +A K G I RSL + +Y+P++RFRYD S ++ ++
Sbjct: 59 A---GRAAAAAGFKSAEGFIKRSLAGMLKMKYMPDIRFRYDESFAYGQSIDTVL 109
>gi|313894756|ref|ZP_07828316.1| ribosome-binding factor A [Selenomonas sp. oral taxon 137 str.
F0430]
gi|312976437|gb|EFR41892.1| ribosome-binding factor A [Selenomonas sp. oral taxon 137 str.
F0430]
Length = 124
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 55/98 (56%), Gaps = 5/98 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP-D 69
R +V E ++ + +IL++ +D I ++++ V + DLR A +Y+S+ D
Sbjct: 5 RVEKVQELMKQEISDIILHD-LKDPRIG--FVTVTSVACTEDLREAKIYVSVMGDEKGVQ 61
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSL 107
++ LN + ++R IGR +R LR+ PE+ F DTSL
Sbjct: 62 ESLAGLNRALGYVRREIGRRIR-LRFTPEISFALDTSL 98
>gi|304396349|ref|ZP_07378230.1| ribosome-binding factor A [Pantoea sp. aB]
gi|308189114|ref|YP_003933245.1| Ribosome-binding factor A [Pantoea vagans C9-1]
gi|304355858|gb|EFM20224.1| ribosome-binding factor A [Pantoea sp. aB]
gi|308059624|gb|ADO11796.1| Ribosome-binding factor A [Pantoea vagans C9-1]
Length = 136
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 62/115 (53%), Gaps = 6/115 (5%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
K R RV +E++ + +IL E +D + ++++S V +S DL A V+++ D
Sbjct: 4 KEFGRPQRVSQELQKEI-AMILQREIKDPRLGM-MVTVSGVEVSRDLAYAKVFVTFLNDK 61
Query: 67 SPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
D + + AL +IR +G+++R LR VPEL F YD SL +++ L+
Sbjct: 62 DEDAIKHGLKALKEASGYIRILLGKAMR-LRIVPELTFFYDNSLVEGMRMSNLVT 115
>gi|303248246|ref|ZP_07334509.1| ribosome-binding factor A [Desulfovibrio fructosovorans JJ]
gi|302490384|gb|EFL50295.1| ribosome-binding factor A [Desulfovibrio fructosovorans JJ]
Length = 111
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 59/104 (56%), Gaps = 7/104 (6%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQD-RLISRDVISISEVCMSVDLRVATVYISLPLD 65
K SRR+ R+ +++ + M + L + QD RL ++++IS ++ DL +A VY +L D
Sbjct: 4 KPSRRSSRLADQI-AREMALALAEDVQDPRL---ELVTISGAALNADLSIARVYYTLSGD 59
Query: 66 VSPDRVISALNCNIK-FIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
+ + K F+R +G+ LR LR VP+LRF DT L+
Sbjct: 60 EARLAEAAEALEQAKGFLRTLLGKRLR-LRAVPQLRFARDTFLE 102
>gi|87125212|ref|ZP_01081058.1| Ribosome-binding factor A [Synechococcus sp. RS9917]
gi|86166981|gb|EAQ68242.1| Ribosome-binding factor A [Synechococcus sp. RS9917]
Length = 136
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 53/101 (52%), Gaps = 3/101 (2%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDVS 67
RR RV +R ++++ +D + + ++SI+EV +S DL+ +++S+ D
Sbjct: 4 GRRVERVAALIRRETSELLIHG-IRDERVHQGMVSITEVEVSGDLQHCKIFVSIYGEDAD 62
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
V+ L ++RG +GR L +R PE+ F+ D ++
Sbjct: 63 KQNVLEGLKAASGYLRGELGRRL-QMRRAPEVVFQLDRGIE 102
>gi|261253849|ref|ZP_05946422.1| ribosome-binding factor A [Vibrio orientalis CIP 102891]
gi|260937240|gb|EEX93229.1| ribosome-binding factor A [Vibrio orientalis CIP 102891]
Length = 135
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 63/113 (55%), Gaps = 6/113 (5%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-- 64
K R RV ++++ L +IL E +D + +++IS+V +S DL A V+++
Sbjct: 3 KEFSRTQRVAQQLQKEL-AMILQREVRDSRLG--MVTISDVEVSRDLAYAKVFVTFLCIG 59
Query: 65 DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ +P+ + AL + IR +G+ +R LR PE+RF YD +L +++ L+
Sbjct: 60 EQTPESCLEALREHEVHIRMMLGKRIR-LRLTPEVRFYYDNTLVEGMRMSNLV 111
>gi|224025278|ref|ZP_03643644.1| hypothetical protein BACCOPRO_02017 [Bacteroides coprophilus DSM
18228]
gi|224018514|gb|EEF76512.1| hypothetical protein BACCOPRO_02017 [Bacteroides coprophilus DSM
18228]
Length = 111
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 41 VISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRN-LRYVPEL 99
++S+S V +S D+ A VY+S+ + ++ +N N+K IR +G +R+ LR +PEL
Sbjct: 32 LVSVSIVRISPDMSYARVYLSVFPSERSEEIVKNINANMKAIRFELGNRVRHQLRIIPEL 91
Query: 100 RFRYDTSLQSYWKLNALM 117
+F D SL ++ L+
Sbjct: 92 KFFVDDSLDYAAHIDELL 109
>gi|70734338|ref|YP_257978.1| ribosome-binding factor A [Pseudomonas fluorescens Pf-5]
gi|123658131|sp|Q4KIF5|RBFA_PSEF5 RecName: Full=Ribosome-binding factor A
gi|68348637|gb|AAY96243.1| ribosome-binding factor A [Pseudomonas fluorescens Pf-5]
Length = 133
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 63/114 (55%), Gaps = 7/114 (6%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
K R R+G++++ L +I E +D + +++I+ V +S D+ A ++I++
Sbjct: 3 KEYSRTQRIGDQMQRELAQLI-RREVKDPRVG--LVTITAVEVSRDVGHAKIFITVMGQE 59
Query: 67 SPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ +++ I LN F+R ++ + ++ LR VP+L F YD S+ L+AL+
Sbjct: 60 NAEQIAQSIKVLNSAAGFLRMQLAKEMK-LRSVPQLHFHYDESVARGAHLSALI 112
>gi|30690114|ref|NP_195199.2| ribosome-binding factor A family protein [Arabidopsis thaliana]
gi|78099793|sp|O65693|RBFA_ARATH RecName: Full=Probable ribosome-binding factor A, chloroplastic;
Flags: Precursor
gi|25082957|gb|AAN72022.1| putative protein [Arabidopsis thaliana]
gi|30023650|gb|AAP13358.1| At4g34730 [Arabidopsis thaliana]
gi|332661016|gb|AEE86416.1| ribosome-binding factor A [Arabidopsis thaliana]
Length = 215
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 50/85 (58%), Gaps = 3/85 (3%)
Query: 34 DRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPDRVISALNCNIKFIRGRIGRSLRN 92
DR +S + +IS+V +S DL+V VY+S D D I+ L K++R +G+ ++
Sbjct: 94 DRYLSS-LTTISDVEVSNDLQVVKVYVSVFGDDRGKDVAIAGLKSKAKYVRSELGKRMK- 151
Query: 93 LRYVPELRFRYDTSLQSYWKLNALM 117
LR PE+RF D +++ ++ A++
Sbjct: 152 LRLTPEVRFIEDEAMERGSRVIAIL 176
>gi|52842970|ref|YP_096769.1| ribosome-binding factor A [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
gi|54298755|ref|YP_125124.1| ribosome-binding factor A [Legionella pneumophila str. Paris]
gi|148361085|ref|YP_001252292.1| ribosome binding factor A [Legionella pneumophila str. Corby]
gi|61214776|sp|Q5X1C4|RBFA_LEGPA RecName: Full=Ribosome-binding factor A
gi|61214803|sp|Q5ZRV5|RBFA_LEGPH RecName: Full=Ribosome-binding factor A
gi|166218446|sp|A5IHU6|RBFA_LEGPC RecName: Full=Ribosome-binding factor A
gi|52630081|gb|AAU28822.1| ribosome binding factor A [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
gi|53752540|emb|CAH13972.1| Ribosome-binding factor A [Legionella pneumophila str. Paris]
gi|148282858|gb|ABQ56946.1| ribosome binding factor A [Legionella pneumophila str. Corby]
gi|307611643|emb|CBX01329.1| ribosome-binding factor A [Legionella pneumophila 130b]
Length = 123
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 58/110 (52%), Gaps = 4/110 (3%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS 67
N +R R+ E ++ L +I RL + ++IS V ++ DL A +Y ++ L+
Sbjct: 4 NFKRTDRIAEMIQRKLALIIPQEIKDPRL--KGFVTISAVKVAADLGHAKIYFTV-LNED 60
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
V + LN ++R + RS+ LR VP+L F YD S++ +L+ L+
Sbjct: 61 KSVVTNILNGAASYLRSALARSI-TLRTVPQLHFIYDESIEYGQRLSRLI 109
>gi|302185433|ref|ZP_07262106.1| ribosome-binding factor A [Pseudomonas syringae pv. syringae 642]
Length = 138
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 62/114 (54%), Gaps = 7/114 (6%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
K R R+G++++ L +I E +D + +++I+ V +S D+ A +++++
Sbjct: 3 KEYSRTQRIGDQMQRELAQLI-RREIKDPRVG--LVTITAVDVSRDVGHAKIFMTVMGQD 59
Query: 67 SPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
S + + I LN F+R ++ R ++ LR VP+L F YD S+ L+AL+
Sbjct: 60 SAEEIAQTIKVLNSAAGFLRMQLAREMK-LRSVPQLHFHYDESVVRGAHLSALI 112
>gi|218438840|ref|YP_002377169.1| ribosome-binding factor A [Cyanothece sp. PCC 7424]
gi|226736641|sp|B7KDJ9|RBFA_CYAP7 RecName: Full=Ribosome-binding factor A
gi|218171568|gb|ACK70301.1| ribosome-binding factor A [Cyanothece sp. PCC 7424]
Length = 131
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 57/102 (55%), Gaps = 3/102 (2%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDV 66
RR RV ++ + ++L+ DR + ++SI++V +S DL+ A +++S+ +
Sbjct: 3 TDRRVSRVSSLIKREVSQMLLHGIKDDR-VGAGMVSITDVDVSGDLQHAKIFVSIYGTEQ 61
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
+ + L ++ F+R +G+ +R LR PE+ F DTSL+
Sbjct: 62 AKAETMEGLKSSVGFVRRELGQRIR-LRRTPEVVFLEDTSLE 102
>gi|54295601|ref|YP_128016.1| ribosome-binding factor A [Legionella pneumophila str. Lens]
gi|296108415|ref|YP_003620116.1| ribosome-binding factor A [Legionella pneumophila 2300/99 Alcoy]
gi|61214769|sp|Q5WT37|RBFA_LEGPL RecName: Full=Ribosome-binding factor A
gi|53755433|emb|CAH16929.1| Ribosome-binding factor A [Legionella pneumophila str. Lens]
gi|295650317|gb|ADG26164.1| ribosome-binding factor A [Legionella pneumophila 2300/99 Alcoy]
Length = 123
Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 58/110 (52%), Gaps = 4/110 (3%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS 67
N +R R+ E ++ L +I RL + ++IS V ++ DL A +Y ++ L+
Sbjct: 4 NFKRTDRIAEMIQRKLALIIPQEIKDPRL--KGFVTISAVKVAADLGHAKIYFTV-LNED 60
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
V + LN ++R + RS+ LR VP+L F YD S++ +L+ L+
Sbjct: 61 KSVVTNILNGAASYLRSALARSI-TLRTVPQLHFIYDESIEYGQRLSRLI 109
>gi|312885212|ref|ZP_07744891.1| ribosome-binding factor A [Vibrio caribbenthicus ATCC BAA-2122]
gi|309367152|gb|EFP94725.1| ribosome-binding factor A [Vibrio caribbenthicus ATCC BAA-2122]
Length = 136
Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 63/114 (55%), Gaps = 6/114 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL- 64
K R RV ++++ L +IL E +D + +++IS+V +S DL A V+++
Sbjct: 2 SKEFSRTQRVAQQLQKEL-ALILQREVRDSRLG--MVTISDVEVSRDLAYAKVFVTFLCV 58
Query: 65 -DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ +P+ + AL + IR +G+ +R LR PE+RF YD +L +++ L+
Sbjct: 59 GEQTPESCLEALREHEVHIRMMLGKRIR-LRLTPEVRFYYDNTLVEGMRMSNLV 111
>gi|163802305|ref|ZP_02196199.1| ribosome-binding factor A [Vibrio sp. AND4]
gi|159173834|gb|EDP58648.1| ribosome-binding factor A [Vibrio sp. AND4]
Length = 135
Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 63/114 (55%), Gaps = 6/114 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL- 64
K R RV ++++ L +IL E +D + +++IS+V S DL A V+++
Sbjct: 2 SKEFSRTQRVSQQLQKEL-AMILQREVRDSRLG--MVTISDVEASRDLAYAKVFVTFLCV 58
Query: 65 -DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ +P+ ++AL + IR +G+ +R LR PE+RF YD +L +++ L+
Sbjct: 59 GEQTPESCLAALREHEVHIRMMLGKRIR-LRLTPEIRFYYDNTLVEGMRMSNLV 111
>gi|107103842|ref|ZP_01367760.1| hypothetical protein PaerPA_01004913 [Pseudomonas aeruginosa PACS2]
gi|218893838|ref|YP_002442707.1| ribosome-binding factor A [Pseudomonas aeruginosa LESB58]
gi|254244355|ref|ZP_04937677.1| ribosome-binding factor A [Pseudomonas aeruginosa 2192]
gi|226736650|sp|B7V1F5|RBFA_PSEA8 RecName: Full=Ribosome-binding factor A
gi|126197733|gb|EAZ61796.1| ribosome-binding factor A [Pseudomonas aeruginosa 2192]
gi|218774066|emb|CAW29882.1| ribosome-binding factor A [Pseudomonas aeruginosa LESB58]
Length = 130
Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 65/115 (56%), Gaps = 7/115 (6%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K+ R R+G++++ L +I E +D + +++I+ V +S D+ A V+I++
Sbjct: 2 AKDYSRTQRIGDQMQRELAQLI-QREIKDPRLG--LVTITGVEVSRDVAHAKVFITVMGQ 58
Query: 66 VSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
++ + LN ++R +G+S++ LR VP+L F YD S++ +L+AL+
Sbjct: 59 DDAGKIALNMEILNDAAGYLRMLLGKSMK-LRSVPQLHFHYDESIRRGAELSALI 112
>gi|148976706|ref|ZP_01813393.1| ribosome-binding factor A [Vibrionales bacterium SWAT-3]
gi|145964057|gb|EDK29315.1| ribosome-binding factor A [Vibrionales bacterium SWAT-3]
Length = 137
Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 64/113 (56%), Gaps = 6/113 (5%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-- 64
K R RV ++++ L +IL E +D I +++IS+V +S DL A V+++
Sbjct: 3 KEFSRTQRVSQQLQKEL-ALILQREVRDSRIG--MVTISDVEVSRDLAYAKVFVTFLCIG 59
Query: 65 DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ +P+ ++AL + IR +G+ +R+ R PE+RF YD +L +++ L+
Sbjct: 60 EQTPESCLAALKEHEVPIRMALGKRIRH-RLTPEVRFTYDNTLVEGMRMSNLV 111
>gi|289676026|ref|ZP_06496916.1| ribosome-binding factor A [Pseudomonas syringae pv. syringae FF5]
Length = 117
Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 62/115 (53%), Gaps = 7/115 (6%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K R R+G++++ L +I E +D + +++I+ V +S D+ A +++++
Sbjct: 2 AKEYSRTQRIGDQMQRELAQLI-RREIKDPRVG--LVTITAVDVSRDVGHAKIFMTVMGQ 58
Query: 66 VSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
S + + I LN F+R ++ R ++ LR VP+L F YD S+ L+AL+
Sbjct: 59 DSAEEIAQTIKVLNAAAGFLRMQLAREMK-LRSVPQLHFHYDESVVRGAHLSALI 112
>gi|66047406|ref|YP_237247.1| ribosome-binding factor A [Pseudomonas syringae pv. syringae B728a]
gi|75500704|sp|Q4ZNR3|RBFA_PSEU2 RecName: Full=Ribosome-binding factor A
gi|63258113|gb|AAY39209.1| Ribosome-binding factor A [Pseudomonas syringae pv. syringae B728a]
Length = 138
Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 62/114 (54%), Gaps = 7/114 (6%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
K R R+G++++ L +I E +D + +++I+ V +S D+ A +++++
Sbjct: 3 KEYSRTQRIGDQMQRELAQLI-RREIKDPRVG--LVTITAVDVSRDVGHAKIFMTVMGQD 59
Query: 67 SPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
S + + I LN F+R ++ R ++ LR VP+L F YD S+ L+AL+
Sbjct: 60 SAEEIAQTIKVLNSAAGFLRMQLAREMK-LRSVPQLHFHYDESVVRGAHLSALI 112
>gi|49077912|gb|AAT49730.1| PA4743 [synthetic construct]
Length = 130
Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 65/115 (56%), Gaps = 7/115 (6%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K+ R R+G++++ L +I E +D + +++I+ V +S D+ A V+I++
Sbjct: 2 AKDYSRTQRIGDQMQRELAQLI-QREIKDPRLG--LVTITGVEVSRDVAHAKVFITVMGQ 58
Query: 66 VSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
++ + LN ++R +G+S++ LR VP+L F YD S++ +L+AL+
Sbjct: 59 DDAGKIALNMEILNDAAGYLRMLLGKSMK-LRSVPQLHFHYDESIRRGAELSALI 112
>gi|119774099|ref|YP_926839.1| ribosome-binding factor A [Shewanella amazonensis SB2B]
gi|166219403|sp|A1S463|RBFA_SHEAM RecName: Full=Ribosome-binding factor A
gi|119766599|gb|ABL99169.1| ribosome-binding factor A [Shewanella amazonensis SB2B]
Length = 137
Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 62/111 (55%), Gaps = 8/111 (7%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
R R+G++++ L +V L + +D I ++++++V +S DL A VY++ + P
Sbjct: 7 RTRRIGQQLQQELAFV-LQRDMKDPRIG--MVTVNDVDVSRDLSHAKVYVTF-FEEDPQV 62
Query: 71 V---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ ++ALN + R + ++ LR +PELRF YD SL +++ L+
Sbjct: 63 IEAKLAALNTAAPYARTLVAGRMK-LRVMPELRFIYDASLVEGMRMSNLVS 112
>gi|71736021|ref|YP_276310.1| ribosome-binding factor A [Pseudomonas syringae pv. phaseolicola
1448A]
gi|257482260|ref|ZP_05636301.1| ribosome-binding factor A [Pseudomonas syringae pv. tabaci ATCC
11528]
gi|289627534|ref|ZP_06460488.1| ribosome-binding factor A [Pseudomonas syringae pv. aesculi str.
NCPPB3681]
gi|289646962|ref|ZP_06478305.1| ribosome-binding factor A [Pseudomonas syringae pv. aesculi str.
2250]
gi|298488457|ref|ZP_07006488.1| Ribosome-binding factor A [Pseudomonas savastanoi pv. savastanoi
NCPPB 3335]
gi|123635189|sp|Q48E78|RBFA_PSE14 RecName: Full=Ribosome-binding factor A
gi|71556574|gb|AAZ35785.1| ribosome-binding factor A [Pseudomonas syringae pv. phaseolicola
1448A]
gi|298157082|gb|EFH98171.1| Ribosome-binding factor A [Pseudomonas savastanoi pv. savastanoi
NCPPB 3335]
gi|320322527|gb|EFW78620.1| ribosome-binding factor A [Pseudomonas syringae pv. glycinea str.
B076]
gi|320330004|gb|EFW85991.1| ribosome-binding factor A [Pseudomonas syringae pv. glycinea str.
race 4]
gi|330868247|gb|EGH02956.1| ribosome-binding factor A [Pseudomonas syringae pv. aesculi str.
0893_23]
gi|330987056|gb|EGH85159.1| ribosome-binding factor A [Pseudomonas syringae pv. lachrymans str.
M301315]
Length = 138
Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 62/114 (54%), Gaps = 7/114 (6%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
K R R+G++++ L +I E +D + +++I+ V +S D+ A +++++
Sbjct: 3 KEYSRTQRIGDQMQRELAQLI-RREIKDPRVG--LVTITAVDVSRDVGHAKIFMTVMGQD 59
Query: 67 SPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
S + + I LN F+R ++ R ++ LR VP+L F YD S+ L+AL+
Sbjct: 60 SAEEIAQTIKVLNSAAGFLRMQLAREMK-LRSVPQLHFHYDESVVRGAHLSALI 112
>gi|15599937|ref|NP_253431.1| ribosome-binding factor A [Pseudomonas aeruginosa PAO1]
gi|116052890|ref|YP_793207.1| ribosome-binding factor A [Pseudomonas aeruginosa UCBPP-PA14]
gi|296391570|ref|ZP_06881045.1| ribosome-binding factor A [Pseudomonas aeruginosa PAb1]
gi|313109724|ref|ZP_07795664.1| ribosome-binding factor A [Pseudomonas aeruginosa 39016]
gi|20978658|sp|Q9HV56|RBFA_PSEAE RecName: Full=Ribosome-binding factor A
gi|122257099|sp|Q02FS9|RBFA_PSEAB RecName: Full=Ribosome-binding factor A
gi|9951005|gb|AAG08129.1|AE004888_4 ribosome-binding factor A [Pseudomonas aeruginosa PAO1]
gi|115588111|gb|ABJ14126.1| ribosome-binding factor A [Pseudomonas aeruginosa UCBPP-PA14]
gi|310882166|gb|EFQ40760.1| ribosome-binding factor A [Pseudomonas aeruginosa 39016]
Length = 129
Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 65/115 (56%), Gaps = 7/115 (6%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K+ R R+G++++ L +I E +D + +++I+ V +S D+ A V+I++
Sbjct: 2 AKDYSRTQRIGDQMQRELAQLI-QREIKDPRLG--LVTITGVEVSRDVAHAKVFITVMGQ 58
Query: 66 VSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
++ + LN ++R +G+S++ LR VP+L F YD S++ +L+AL+
Sbjct: 59 DDAGKIALNMEILNDAAGYLRMLLGKSMK-LRSVPQLHFHYDESIRRGAELSALI 112
>gi|262197034|ref|YP_003268243.1| ribosome-binding factor A [Haliangium ochraceum DSM 14365]
gi|262080381|gb|ACY16350.1| ribosome-binding factor A [Haliangium ochraceum DSM 14365]
Length = 150
Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 49/97 (50%), Gaps = 4/97 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL---PLDVS 67
R RVG +R L ++ R+ + ++SI++V ++ DL VA +Y+S P +
Sbjct: 6 RRQRVGNALREVLTELVARELKDPRVHAAGLVSINQVELNRDLSVAFIYVSFVGAPDARA 65
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYD 104
R + L F+RG R L+ L+ PELRF D
Sbjct: 66 EKRALDGLQAAAGFLRGPAARRLK-LQRAPELRFMDD 101
>gi|76788809|ref|YP_327895.1| ribosome-binding factor A [Chlamydia trachomatis A/HAR-13]
gi|237802527|ref|YP_002887721.1| ribosome-binding factor A [Chlamydia trachomatis B/Jali20/OT]
gi|237804444|ref|YP_002888598.1| ribosome-binding factor A [Chlamydia trachomatis B/TZ1A828/OT]
gi|123607168|sp|Q3KMS5|RBFA_CHLTA RecName: Full=Ribosome-binding factor A
gi|76167339|gb|AAX50347.1| ribosome-binding factor A [Chlamydia trachomatis A/HAR-13]
gi|231272744|emb|CAX09648.1| ribosome-binding factor A [Chlamydia trachomatis B/TZ1A828/OT]
gi|231273761|emb|CAX10542.1| ribosome-binding factor A [Chlamydia trachomatis B/Jali20/OT]
Length = 123
Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 53/94 (56%), Gaps = 3/94 (3%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVS 67
+RR +V +R A+ VIL + + IS I+I+ V +S DL+ A VY+S +P + S
Sbjct: 4 NRRMKKVNAMLREAIAKVILKDVKHPK-ISNRWITITRVSLSRDLQSACVYVSIMPHENS 62
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRF 101
+ ++AL + FI + + L L+Y P+L F
Sbjct: 63 QEETLAALKASAGFIAFQASKDLV-LKYFPDLNF 95
>gi|237725978|ref|ZP_04556459.1| ribosome-binding factor A [Bacteroides sp. D4]
gi|229435786|gb|EEO45863.1| ribosome-binding factor A [Bacteroides dorei 5_1_36/D4]
Length = 111
Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 41 VISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRN-LRYVPEL 99
++S+S V ++ D+ +A VY+S+ ++ +N N+K IR +G +R+ LR +PEL
Sbjct: 32 LVSVSAVRITPDMSIARVYLSVFPSERSQEIVKNINDNMKSIRYELGTRVRHQLRIIPEL 91
Query: 100 RFRYDTSLQSYWKLNALM 117
+F D SL +++ L+
Sbjct: 92 KFFVDDSLDYAERIDELL 109
>gi|323491072|ref|ZP_08096264.1| ribosome-binding factor A [Vibrio brasiliensis LMG 20546]
gi|323314736|gb|EGA67808.1| ribosome-binding factor A [Vibrio brasiliensis LMG 20546]
Length = 136
Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 63/114 (55%), Gaps = 6/114 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL- 64
K R RV ++++ L +IL E +D + +++IS+V +S DL A V+++
Sbjct: 2 SKEFSRTQRVSQQLQKEL-ALILQREVRDSRLG--MVTISDVEVSRDLAYAKVFVTFLCV 58
Query: 65 -DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ +P+ + AL + IR +G+ +R LR PE+RF YD +L +++ L+
Sbjct: 59 GEQTPESCLEALREHEVHIRMMLGKRIR-LRLTPEVRFYYDNTLVEGMRMSNLV 111
>gi|15604814|ref|NP_219598.1| ribosome-binding factor A [Chlamydia trachomatis D/UW-3/CX]
gi|166154316|ref|YP_001654434.1| ribosome-binding factor A [Chlamydia trachomatis 434/Bu]
gi|166155191|ref|YP_001653446.1| ribosome-binding factor A [Chlamydia trachomatis
L2b/UCH-1/proctitis]
gi|255310897|ref|ZP_05353467.1| ribosome-binding factor A [Chlamydia trachomatis 6276]
gi|255317197|ref|ZP_05358443.1| ribosome-binding factor A [Chlamydia trachomatis 6276s]
gi|255348457|ref|ZP_05380464.1| ribosome-binding factor A [Chlamydia trachomatis 70]
gi|255502999|ref|ZP_05381389.1| ribosome-binding factor A [Chlamydia trachomatis 70s]
gi|255506670|ref|ZP_05382309.1| ribosome-binding factor A [Chlamydia trachomatis D(s)2923]
gi|301335567|ref|ZP_07223811.1| ribosome-binding factor A [Chlamydia trachomatis L2tet1]
gi|6685836|sp|O84097|RBFA_CHLTR RecName: Full=Ribosome-binding factor A
gi|226723593|sp|B0B9K3|RBFA_CHLT2 RecName: Full=Ribosome-binding factor A
gi|226723594|sp|B0BB82|RBFA_CHLTB RecName: Full=Ribosome-binding factor A
gi|3328491|gb|AAC67686.1| Ribosome Binding Factor A [Chlamydia trachomatis D/UW-3/CX]
gi|165930304|emb|CAP03790.1| ribosome-binding factor A [Chlamydia trachomatis 434/Bu]
gi|165931179|emb|CAP06744.1| ribosome-binding factor A [Chlamydia trachomatis
L2b/UCH-1/proctitis]
gi|289525139|emb|CBJ14611.1| ribosome-binding factor A [Chlamydia trachomatis Sweden2]
gi|296434683|gb|ADH16861.1| ribosome-binding factor A [Chlamydia trachomatis E/150]
gi|296435612|gb|ADH17786.1| ribosome-binding factor A [Chlamydia trachomatis G/9768]
gi|296436535|gb|ADH18705.1| ribosome-binding factor A [Chlamydia trachomatis G/11222]
gi|296437472|gb|ADH19633.1| ribosome-binding factor A [Chlamydia trachomatis G/11074]
gi|296438400|gb|ADH20553.1| ribosome-binding factor A [Chlamydia trachomatis E/11023]
gi|297139971|gb|ADH96729.1| ribosome-binding factor A [Chlamydia trachomatis G/9301]
gi|297748224|gb|ADI50770.1| Ribosome-binding factor A [Chlamydia trachomatis D-EC]
gi|297749104|gb|ADI51782.1| Ribosome-binding factor A [Chlamydia trachomatis D-LC]
Length = 123
Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 53/94 (56%), Gaps = 3/94 (3%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVS 67
+RR +V +R A+ VIL + + IS I+I+ V +S DL+ A VY+S +P + S
Sbjct: 4 NRRMKKVNAMLREAIAKVILKDVKHPK-ISNRWITITRVSLSRDLQSACVYVSIMPHENS 62
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRF 101
+ ++AL + FI + + L L+Y P+L F
Sbjct: 63 QEETLAALKASAGFIAFQASKDLV-LKYFPDLNF 95
>gi|320530112|ref|ZP_08031182.1| ribosome-binding factor A [Selenomonas artemidis F0399]
gi|320137545|gb|EFW29457.1| ribosome-binding factor A [Selenomonas artemidis F0399]
Length = 112
Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 42 ISISEVCMSVDLRVATVYISLPLDVSP-DRVISALNCNIKFIRGRIGRSLRNLRYVPELR 100
++++ V + DLR A +Y+S+ D ++ LN + ++R IGR +R LR+ PE+
Sbjct: 21 VTVTSVACTEDLREAKIYVSVMGDEKGVQESLAGLNRALGYVRREIGRRIR-LRFTPEIS 79
Query: 101 FRYDTSL 107
F DTSL
Sbjct: 80 FALDTSL 86
>gi|117926999|ref|YP_867616.1| ribosome-binding factor A [Magnetococcus sp. MC-1]
gi|171460788|sp|A0LE17|RBFA_MAGSM RecName: Full=Ribosome-binding factor A
gi|117610755|gb|ABK46210.1| ribosome-binding factor A [Magnetococcus sp. MC-1]
Length = 123
Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 55/115 (47%), Gaps = 2/115 (1%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
R RVG +R + ++ E +D + ++I EV +S DL A VY ++ +
Sbjct: 4 RTERVGNAIRKEVASMLTRGEIKDPRLG-GFVNIQEVRVSPDLSYAKVYYTVFGESDQAG 62
Query: 71 VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
V A F+R I + L+ LR+ PELRF D +++ L+ +IP A
Sbjct: 63 VADAWQRASGFLRNVIAKRLK-LRHAPELRFELDHVADYSKRIDELLNGLEIPPA 116
>gi|289549104|ref|YP_003474092.1| ribosome-binding factor A [Thermocrinis albus DSM 14484]
gi|289182721|gb|ADC89965.1| ribosome-binding factor A [Thermocrinis albus DSM 14484]
Length = 107
Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 60/105 (57%), Gaps = 4/105 (3%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
RR R+ E ++ + +IL + RL ++V+ ++ + +S D++ TVY + +
Sbjct: 2 ERRKERLRELLKQEIANLILYHLKDPRL--KEVV-VTRIELSPDMKDMTVYYTTLTEGEE 58
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKL 113
+++ AL FIR ++ +SL +++YVP +RF++D L+ +L
Sbjct: 59 EKIQKALEQAKGFIRHQLMKSL-DIKYVPNMRFKFDKELKQMERL 102
>gi|238897561|ref|YP_002923240.1| 30S ribosome-binding factor [Candidatus Hamiltonella defensa 5AT
(Acyrthosiphon pisum)]
gi|229465318|gb|ACQ67092.1| 30S ribosome-binding factor [Candidatus Hamiltonella defensa 5AT
(Acyrthosiphon pisum)]
Length = 137
Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 58/109 (53%), Gaps = 12/109 (11%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS----L 62
K RA RV E++ + +IL E +D + ++++S V MS DL A ++++ L
Sbjct: 2 KEFSRAQRVSHEIQKEI-ALILQREIKDPRVG--MVTVSSVKMSRDLAYAKIFVTFLNDL 58
Query: 63 PLDVSPDRV----ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSL 107
+++PD I AL +IR +G+++ LR VP L F YD SL
Sbjct: 59 TENMAPDHHHADGIKALQEASGYIRVLLGKAM-CLRIVPHLTFIYDDSL 106
>gi|331011500|gb|EGH91556.1| ribosome-binding factor A [Pseudomonas syringae pv. tabaci ATCC
11528]
Length = 138
Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 62/114 (54%), Gaps = 7/114 (6%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
K R R+G++++ L +I E +D + +++I+ V +S D+ A +++++
Sbjct: 3 KKYSRTQRIGDQMQRELAQLI-RREIKDPRVG--LVTITPVDVSRDVGHAKIFMTVMGQD 59
Query: 67 SPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
S + + I LN F+R ++ R ++ LR VP+L F YD S+ L+AL+
Sbjct: 60 SAEEIAQTIKVLNSAAGFLRMQLAREMK-LRSVPQLHFHYDESVVRGAHLSALI 112
>gi|77919157|ref|YP_356972.1| ribosome-binding factor A [Pelobacter carbinolicus DSM 2380]
gi|123574181|sp|Q3A4A5|RBFA_PELCD RecName: Full=Ribosome-binding factor A
gi|77545240|gb|ABA88802.1| ribosome-binding factor A [Pelobacter carbinolicus DSM 2380]
Length = 119
Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 58/108 (53%), Gaps = 5/108 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
R RVGE+++ + ++L +D + ++I+ V ++ D+ +A VY ++ + +
Sbjct: 5 RPHRVGEQLQKEISALLLKG-LKDPRVG--FVTITAVSVTPDMHLARVYYTVYGEEEQRK 61
Query: 71 VIS-ALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
L F R +GR LR +RYVP+L F +D +L+ ++ +L+
Sbjct: 62 ETQKGLESATPFFRRELGRRLR-MRYVPDLVFEFDKALEYGNRIESLL 108
>gi|187933507|ref|YP_001885472.1| ribosome-binding factor A [Clostridium botulinum B str. Eklund 17B]
gi|238691621|sp|B2TJ56|RBFA_CLOBB RecName: Full=Ribosome-binding factor A
gi|187721660|gb|ACD22881.1| ribosome-binding factor A [Clostridium botulinum B str. Eklund 17B]
Length = 116
Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 61/110 (55%), Gaps = 7/110 (6%)
Query: 11 RALRVGEEVRSALMWVILNNEFQD-RLISRDVISISEVCMSVDLRVATVYISLPLDVSPD 69
R R+ EE + + +I NE +D RL + +IS+++V ++ DL+ A VY+S+ +
Sbjct: 5 RGGRINEEFKREISNII-QNEIKDPRLTA--MISVTDVKVTKDLKYAKVYVSIFSTKEEE 61
Query: 70 RV--ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ +AL FIR +G+ + N+R+ PE+ F D S+ ++ L+
Sbjct: 62 KKDNFTALKSASGFIRKILGQRI-NVRHNPEILFELDDSINYAMHIDELI 110
>gi|291523278|emb|CBK81571.1| ribosome-binding factor A [Coprococcus catus GD/7]
Length = 130
Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 60/112 (53%), Gaps = 4/112 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
KNS + R+ EV+ L +I + E +D IS + S+ V ++ DL+ YIS+ D
Sbjct: 3 KNSIKNTRINGEVQKELSRII-SREIKDPRIS-PMTSVVAVEVAPDLKQCKAYISVLGDK 60
Query: 67 -SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ D ++ L I FIR + R++ NLR PE+ F D S++ ++ L+
Sbjct: 61 DAQDATLAGLKSAIGFIRRELARTV-NLRNTPEIHFVLDQSIEYGVNMSKLI 111
>gi|288928933|ref|ZP_06422779.1| ribosome-binding factor A [Prevotella sp. oral taxon 317 str.
F0108]
gi|288329917|gb|EFC68502.1| ribosome-binding factor A [Prevotella sp. oral taxon 317 str.
F0108]
Length = 111
Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 33 QDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRN 92
Q R++ ++S++ +S DL + T Y+S+ + ++ + N K IR +G + N
Sbjct: 24 QTRMMHGVMVSVTRTRVSPDLSICTAYLSVFPSEKGEELLKNIESNTKTIRYELGTRVHN 83
Query: 93 -LRYVPELRFRYDTSLQSYWKLNALM 117
LR +PELRF D SL +++ L+
Sbjct: 84 QLRIIPELRFFIDDSLDYIERIDELL 109
>gi|285017809|ref|YP_003375520.1| ribosome-binding factor a protein [Xanthomonas albilineans GPE
PC73]
gi|283473027|emb|CBA15532.1| probable ribosome-binding factor a protein [Xanthomonas
albilineans]
Length = 136
Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 64/122 (52%), Gaps = 5/122 (4%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
K+ RR RV ++R L I++ +D + +S+S+V ++ D+ A V+++ +
Sbjct: 4 KSFRRTDRVAAQIRRDL-GTIVHAAVRDHGLPS--VSVSDVEVTRDMAHAKVFVTALMPE 60
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM-CLPKIPVA 125
+ L +R + R+++ LR+VPEL F YD S+ +++ L+ +P++
Sbjct: 61 RSSEAVKGLKELAPQLRTELARAMK-LRHVPELHFHYDDSVDRGERIDTLLRDMPELQSG 119
Query: 126 LE 127
+E
Sbjct: 120 VE 121
>gi|229918670|ref|YP_002887316.1| ribosome-binding factor A [Exiguobacterium sp. AT1b]
gi|229470099|gb|ACQ71871.1| ribosome-binding factor A [Exiguobacterium sp. AT1b]
Length = 115
Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 58/110 (52%), Gaps = 8/110 (7%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL---PLDVS 67
RA RV E++R + V+L R + +I+ V ++ DL+ ATVY ++ DV
Sbjct: 4 RAQRVAEQMRKEITDVLLREVSDPRTKN---ATITSVDVTGDLQQATVYYTVLGDEEDVK 60
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ + L+ FIR IG +R LR PE+ F YD+S+ +++L+
Sbjct: 61 AE-TQAGLDKAKGFIRREIGNRIR-LRKTPEISFEYDSSVAYGSHIDSLI 108
>gi|303229587|ref|ZP_07316375.1| ribosome-binding factor A [Veillonella atypica ACS-134-V-Col7a]
gi|302515712|gb|EFL57666.1| ribosome-binding factor A [Veillonella atypica ACS-134-V-Col7a]
Length = 118
Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 43 SISEVCMSVDLRVATVYISL-PLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRF 101
++++V ++ DLR AT+Y+SL D + + AL +R +G+ L+ LR++P + F
Sbjct: 34 TVTDVHVTGDLREATIYVSLFGSDKEKEDTLIALKHASGHVRTELGKVLK-LRHIPTITF 92
Query: 102 RYDTSLQSYWKLNALM 117
DTSL + +L+
Sbjct: 93 DKDTSLDYSMHIESLL 108
>gi|87301786|ref|ZP_01084620.1| ribosome-binding factor A [Synechococcus sp. WH 5701]
gi|87283354|gb|EAQ75309.1| ribosome-binding factor A [Synechococcus sp. WH 5701]
Length = 128
Score = 43.9 bits (102), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 50/94 (53%), Gaps = 4/94 (4%)
Query: 27 ILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR--VISALNCNIKFIRG 84
+L N +D +S ++S+++V ++ DL+ +++S+ DR ++ L F++G
Sbjct: 12 LLVNGIKDERVSLGMVSVTQVEVAGDLQHCKIFVSI-FGTDEDRQTALAGLKSAAPFVKG 70
Query: 85 RIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ R L NLR PE++F D LQ + L+
Sbjct: 71 ELARRL-NLRRTPEVQFLLDRGLQKGSSVLGLLS 103
>gi|329295927|ref|ZP_08253263.1| ribosome-binding factor A [Plautia stali symbiont]
Length = 135
Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 62/115 (53%), Gaps = 6/115 (5%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
K R RV +E++ + +IL E +D + ++++S V +S DL A V+++ D
Sbjct: 3 KEFGRPQRVAQELQKEI-AIILQREIKDPRLGM-MVTVSGVEVSRDLAYAKVFVTFLNDQ 60
Query: 67 SPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ V + AL +IR +G+++R LR VPEL F YD SL +++ L+
Sbjct: 61 DEEAVKNGLKALKEASGYIRILLGKAMR-LRIVPELTFFYDNSLIEGMRMSNLVS 114
>gi|312963082|ref|ZP_07777567.1| Ribosome-binding factor A [Pseudomonas fluorescens WH6]
gi|311282593|gb|EFQ61189.1| Ribosome-binding factor A [Pseudomonas fluorescens WH6]
Length = 131
Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 63/114 (55%), Gaps = 7/114 (6%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLD 65
K R R+G++++ L +I E +D + +++I+ V +S D+ A ++I+ + D
Sbjct: 3 KEYSRTQRIGDQMQRELAQLI-RREVKDPRVG--LVTITAVEVSRDVGHAKIFITVMGQD 59
Query: 66 VSPD--RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
S + + I LN F+R ++ R ++ LR VP+L F YD S+ L+AL+
Sbjct: 60 NSEEIAQSIKVLNSAAGFLRMQLAREMK-LRSVPQLHFHYDESVVRGAHLSALI 112
>gi|220934180|ref|YP_002513079.1| ribosome-binding factor A [Thioalkalivibrio sp. HL-EbGR7]
gi|254789772|sp|B8GP03|RBFA_THISH RecName: Full=Ribosome-binding factor A
gi|219995490|gb|ACL72092.1| ribosome-binding factor A [Thioalkalivibrio sp. HL-EbGR7]
Length = 129
Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 60/113 (53%), Gaps = 5/113 (4%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPL 64
P++ R RVG++++ L +I E +D + +++++ V +S DL A V+ + L
Sbjct: 2 PRDFSRTERVGDQIQRELAELI-RMELKDPRVG--MVTLAGVEVSRDLAHAKVWFTVLGS 58
Query: 65 DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ L F+R +GR +R LR VP L F+YD + + +L+AL+
Sbjct: 59 EQQIADTTEGLQRAAGFLRRELGRRMR-LRTVPHLHFQYDDTQEKGARLSALI 110
>gi|301300287|ref|ZP_07206496.1| ribosome-binding factor A [Lactobacillus salivarius
ACS-116-V-Col5a]
gi|300852128|gb|EFK79803.1| ribosome-binding factor A [Lactobacillus salivarius
ACS-116-V-Col5a]
Length = 119
Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 46/78 (58%), Gaps = 3/78 (3%)
Query: 42 ISISEVCMSVDLRVATVYISLPLDVSPD--RVISALNCNIKFIRGRIGRSLRNLRYVPEL 99
++I+ V +S DL+ AT+Y S+ D + D +V + L+ IRG++G L ++ PE+
Sbjct: 34 VTITGVEVSGDLQHATIYYSILSDKASDEKKVQTGLDKATSLIRGKLGHRL-SIYVTPEI 92
Query: 100 RFRYDTSLQSYWKLNALM 117
+F D S+Q ++ L+
Sbjct: 93 KFERDKSVQYGDHIDELL 110
>gi|206895632|ref|YP_002247273.1| ribosome-binding factor A [Coprothermobacter proteolyticus DSM
5265]
gi|226736640|sp|B5Y926|RBFA_COPPD RecName: Full=Ribosome-binding factor A
gi|206738249|gb|ACI17327.1| ribosome-binding factor A [Coprothermobacter proteolyticus DSM
5265]
Length = 137
Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 54/98 (55%), Gaps = 4/98 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
R R+ + ++ L ++L + +RL ++I++V +S D + VY S + ++
Sbjct: 5 RKERLQQAIKQELSKILLEDMNDERL---KFVTITDVELSDDQKYLKVYFSTMPGKNSEQ 61
Query: 71 VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
++ +L ++ G + R+LR LR+ PE++F D S++
Sbjct: 62 ILQSLERVKGYVSGEVARTLR-LRFAPEIKFELDNSIE 98
>gi|226313018|ref|YP_002772912.1| ribosome binding factor A [Brevibacillus brevis NBRC 100599]
gi|254789735|sp|C0ZF49|RBFA_BREBN RecName: Full=Ribosome-binding factor A
gi|226095966|dbj|BAH44408.1| ribosome binding factor A [Brevibacillus brevis NBRC 100599]
Length = 121
Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 62/112 (55%), Gaps = 7/112 (6%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS 67
N R RVGEE++ L V L +D + +++++V +S DL++A V++S+
Sbjct: 2 NKTRISRVGEEIKKELSLV-LQRGLKDPRVG--FVTVTDVEVSSDLQLAKVFVSI-FGSE 57
Query: 68 PDR--VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+R ++ L ++R IG+ ++ LR++P+ F+ D S+ K+ +++
Sbjct: 58 EERKASLAGLTKAKGYLRTEIGKRVK-LRHIPDFVFKLDESIDYGSKIESIL 108
>gi|330504826|ref|YP_004381695.1| ribosome-binding factor A [Pseudomonas mendocina NK-01]
gi|328919112|gb|AEB59943.1| ribosome-binding factor A [Pseudomonas mendocina NK-01]
Length = 129
Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 68/116 (58%), Gaps = 8/116 (6%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPL 64
K+ R R+G++++ L V++ E +D + +++I+ V +S DL A V+I+ +
Sbjct: 2 AKDYSRTQRIGDQMQREL-AVLIQREIKDPRLG--LVTITAVDVSRDLSHAKVFITVMGK 58
Query: 65 DVSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
D +++ + L ++R +G+S++ +R +P+L F+YD S++ +L+AL+
Sbjct: 59 DDDAEQIKLNLEILGEAAGYLRMLLGKSMK-VRTIPQLHFQYDASIRRGAELSALI 113
>gi|86148616|ref|ZP_01066899.1| ribosome-binding factor A [Vibrio sp. MED222]
gi|218710444|ref|YP_002418065.1| ribosome-binding factor A [Vibrio splendidus LGP32]
gi|254789773|sp|B7VJH6|RBFA_VIBSL RecName: Full=Ribosome-binding factor A
gi|85833607|gb|EAQ51782.1| ribosome-binding factor A [Vibrio sp. MED222]
gi|218323463|emb|CAV19640.1| ribosome-binding factor A [Vibrio splendidus LGP32]
Length = 137
Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 64/113 (56%), Gaps = 6/113 (5%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-- 64
K R RV ++++ L +IL E +D I +++IS+V +S DL A V+++
Sbjct: 3 KEFSRTQRVSQQLQKEL-ALILQREVRDSRIG--MVTISDVEVSRDLAYAKVFVTFLCIG 59
Query: 65 DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ +P+ ++AL + +R +G+ +R+ R PE+RF YD +L +++ L+
Sbjct: 60 EQTPESCLAALKEHEVPVRMALGKRIRH-RLTPEVRFTYDNTLVEGMRMSNLV 111
>gi|121535263|ref|ZP_01667077.1| ribosome-binding factor A [Thermosinus carboxydivorans Nor1]
gi|121306148|gb|EAX47076.1| ribosome-binding factor A [Thermosinus carboxydivorans Nor1]
Length = 117
Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 57/108 (52%), Gaps = 5/108 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDVSPD 69
R ++ E ++ + +IL E +D I ++++ V +S DLR A +++SL D
Sbjct: 5 RVEKIQEFIKQEVSKIILT-ELKDPRIG--FVTVTRVEVSGDLRYAKIFLSLMGSDEEKA 61
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ L+ + +IR IG+ L +R+VPEL D SLQ ++ L+
Sbjct: 62 GTWAGLHRALGYIRTEIGKHL-GIRHVPELSLHLDESLQYSARIQELL 108
>gi|84387284|ref|ZP_00990305.1| ribosome-binding factor A [Vibrio splendidus 12B01]
gi|84377931|gb|EAP94793.1| ribosome-binding factor A [Vibrio splendidus 12B01]
Length = 137
Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 64/113 (56%), Gaps = 6/113 (5%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-- 64
K R RV ++++ L +IL E +D I +++IS+V +S DL A V+++
Sbjct: 3 KEFSRTQRVSQQLQKEL-ALILQREVRDSRIG--MVTISDVEVSRDLAYAKVFVTFLCIG 59
Query: 65 DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ +P+ ++AL + +R +G+ +R+ R PE+RF YD +L +++ L+
Sbjct: 60 EQTPESCLAALKEHEVPVRMALGKRIRH-RLTPEVRFTYDNTLVEGMRMSNLV 111
>gi|88797624|ref|ZP_01113213.1| ribosome-binding factor A [Reinekea sp. MED297]
gi|88779796|gb|EAR10982.1| ribosome-binding factor A [Reinekea sp. MED297]
Length = 137
Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 64/121 (52%), Gaps = 16/121 (13%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS 67
NS R ++G++++ L VI+ E +D + +++I++V +S DL A VY + +
Sbjct: 4 NSSRIRKIGDQIQKDL-SVIIQREVKDPRVG--MVTINDVKVSSDLSYADVYFTC-MAFG 59
Query: 68 PDRVISA-----------LNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNAL 116
P A LN F+R ++ + L+ LR +P+LRF YD +++ +++ L
Sbjct: 60 PQSEAEAQEQERKEQEKLLNRAAGFMRTQLAQGLK-LRVIPQLRFHYDVVIETGARVSQL 118
Query: 117 M 117
+
Sbjct: 119 I 119
>gi|148657851|ref|YP_001278056.1| ribosome-binding factor A [Roseiflexus sp. RS-1]
gi|172048090|sp|A5UZQ3|RBFA_ROSS1 RecName: Full=Ribosome-binding factor A
gi|148569961|gb|ABQ92106.1| ribosome-binding factor A [Roseiflexus sp. RS-1]
Length = 130
Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 59/112 (52%), Gaps = 8/112 (7%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
S+R ++G E++ L VI E +D + ++ V ++ DL++A V IS+ +P
Sbjct: 2 SKRTEQLGHEIQRILGEVI-QYELKDPRVG--FATVVGVEVTADLQIARVRISVM--GTP 56
Query: 69 DR---VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
D ++AL F+R R+ L LR+VPELR DTS+ ++ L+
Sbjct: 57 DERRETMAALERARGFLRRRLAEELNYLRFVPELRLILDTSVDYSLHIDELL 108
>gi|116073898|ref|ZP_01471160.1| ribosome-binding factor A [Synechococcus sp. RS9916]
gi|116069203|gb|EAU74955.1| ribosome-binding factor A [Synechococcus sp. RS9916]
Length = 133
Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 54/101 (53%), Gaps = 3/101 (2%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDVS 67
RR RV +R +++N +D + + ++SI+EV +S DL+ +++S+ +
Sbjct: 4 GRRVERVAALIRRETSELLING-IRDERVHQGMVSITEVEVSGDLQHCKIFVSIYSEEEQ 62
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
+V+ L ++RG +GR L +R PE+ F+ D ++
Sbjct: 63 RQQVLEGLQAASGYLRGELGRRL-QMRRAPEVVFQLDRGIE 102
>gi|124024303|ref|YP_001018610.1| ribosome-binding factor A [Prochlorococcus marinus str. MIT 9303]
gi|166219388|sp|A2CCY5|RBFA_PROM3 RecName: Full=Ribosome-binding factor A
gi|123964589|gb|ABM79345.1| Ribosome-binding factor A [Prochlorococcus marinus str. MIT 9303]
Length = 142
Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 58/115 (50%), Gaps = 4/115 (3%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDVS 67
RR RV +R ++++ +D + + ++SI+ V +S DL+ +++S+ ++
Sbjct: 4 GRRVERVAALIRRETSELLIHG-IRDERVHQGMVSITNVEVSGDLQHCKIFVSIYGEEIQ 62
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWK-LNALMCLPK 121
V+ L F+RG +GR L+ +R PE+ F D ++ LN L L +
Sbjct: 63 RSEVLEGLEAASGFLRGELGRRLQ-MRRAPEVHFHLDRGIEKGTSVLNLLEQLEQ 116
>gi|302811611|ref|XP_002987494.1| hypothetical protein SELMODRAFT_48536 [Selaginella moellendorffii]
gi|302822285|ref|XP_002992801.1| hypothetical protein SELMODRAFT_48535 [Selaginella moellendorffii]
gi|300139349|gb|EFJ06091.1| hypothetical protein SELMODRAFT_48535 [Selaginella moellendorffii]
gi|300144648|gb|EFJ11330.1| hypothetical protein SELMODRAFT_48536 [Selaginella moellendorffii]
Length = 162
Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 46/78 (58%), Gaps = 2/78 (2%)
Query: 41 VISISEVCMSVDLRVATVYISLPLDVSPDRV-ISALNCNIKFIRGRIGRSLRNLRYVPEL 99
V +IS+V +S DL+VA +YIS+ D + I L K++R ++G+ ++ LR PE+
Sbjct: 48 VTTISDVEISRDLQVAKIYISVFGDERGKEIAIEGLKSREKYVRMQLGKRMK-LRLTPEV 106
Query: 100 RFRYDTSLQSYWKLNALM 117
RF D S + ++ L+
Sbjct: 107 RFIADDSFERGARVIKLL 124
>gi|146308622|ref|YP_001189087.1| ribosome-binding factor A [Pseudomonas mendocina ymp]
gi|166219393|sp|A4XYD9|RBFA_PSEMY RecName: Full=Ribosome-binding factor A
gi|145576823|gb|ABP86355.1| ribosome-binding factor A [Pseudomonas mendocina ymp]
Length = 129
Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 67/116 (57%), Gaps = 8/116 (6%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPL 64
K+ R R+G++++ L V++ E +D + +++I+ V +S DL A V+I+ +
Sbjct: 2 AKDYSRTQRIGDQMQREL-AVLIQREIKDPRLG--LVTITAVDVSRDLSHAKVFITVMGK 58
Query: 65 DVSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
D +++ + L ++R +G+S++ +R +P+L F YD S++ +L+AL+
Sbjct: 59 DDDAEQIKLNLEILGEAAGYLRMLLGKSMK-VRTIPQLHFHYDASIRRGAELSALI 113
>gi|33864228|ref|NP_895788.1| ribosome-binding factor A [Prochlorococcus marinus str. MIT 9313]
gi|39931781|sp|Q7V4I8|RBFA_PROMM RecName: Full=Ribosome-binding factor A
gi|33635812|emb|CAE22137.1| Ribosome-binding factor A [Prochlorococcus marinus str. MIT 9313]
Length = 142
Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 53/101 (52%), Gaps = 3/101 (2%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDVS 67
RR RV +R ++++ +D + + ++SI+ V +S DL+ +++S+ ++
Sbjct: 4 GRRVERVAALIRRETSELLIHG-IRDERVHQGMVSITNVEVSGDLQHCKIFVSIYGEEIQ 62
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
V+ L F+RG +GR L+ +R PE+ F D ++
Sbjct: 63 RSEVLEGLEAASGFLRGELGRRLQ-MRRAPEVHFHLDRGIE 102
>gi|332881242|ref|ZP_08448892.1| ribosome-binding factor A [Capnocytophaga sp. oral taxon 329 str.
F0087]
gi|332680618|gb|EGJ53565.1| ribosome-binding factor A [Capnocytophaga sp. oral taxon 329 str.
F0087]
Length = 111
Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 32 FQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLR 91
Q + + ++S+S +S DL + VY+S+ + ++ +N N+K IR +G +R
Sbjct: 23 LQTKAMKGVLVSVSACRISPDLSICRVYLSIFPSQQSEEIVKNINGNMKAIRYELGTRVR 82
Query: 92 N-LRYVPELRFRYDTSLQSYWKLNALM 117
+ LR +PEL+F D SL ++ L+
Sbjct: 83 HQLRIIPELKFFVDDSLDYIENIDKLL 109
>gi|330997439|ref|ZP_08321290.1| ribosome-binding factor A [Paraprevotella xylaniphila YIT 11841]
gi|329570813|gb|EGG52529.1| ribosome-binding factor A [Paraprevotella xylaniphila YIT 11841]
Length = 111
Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 32 FQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLR 91
Q + + ++S+S +S DL + VY+S+ + +I +N N+K IR +G +R
Sbjct: 23 LQTKAMKGVLVSVSACRISPDLSICRVYLSIFPSRQSEEIIKNINGNMKAIRYELGTRVR 82
Query: 92 N-LRYVPELRFRYDTSLQSYWKLNALM 117
+ LR +PEL+F D SL ++ L+
Sbjct: 83 HQLRIIPELKFFVDDSLDYIENIDKLL 109
>gi|153812991|ref|ZP_01965659.1| hypothetical protein RUMOBE_03398 [Ruminococcus obeum ATCC 29174]
gi|149830938|gb|EDM86028.1| hypothetical protein RUMOBE_03398 [Ruminococcus obeum ATCC 29174]
Length = 127
Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 59/112 (52%), Gaps = 4/112 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLD 65
KNS + R+ EV+ L I+ NE +D I + S+ V ++ DL+ +IS L
Sbjct: 3 KNSIKNTRINGEVQKEL-STIIRNEVKDPRI-HPMTSVMAVEVAPDLKTCKAFISVLGNK 60
Query: 66 VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ D I LN +IR ++ ++L NLR PE+RF D S++ ++ L+
Sbjct: 61 EAKDATIQGLNKAEGYIRRQLAKNL-NLRNTPEIRFILDESIEYGVNMSKLI 111
>gi|240146072|ref|ZP_04744673.1| ribosome-binding factor A [Roseburia intestinalis L1-82]
gi|257201817|gb|EEV00102.1| ribosome-binding factor A [Roseburia intestinalis L1-82]
gi|291536071|emb|CBL09183.1| ribosome-binding factor A [Roseburia intestinalis M50/1]
gi|291538568|emb|CBL11679.1| ribosome-binding factor A [Roseburia intestinalis XB6B4]
Length = 126
Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 61/112 (54%), Gaps = 4/112 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLD 65
KNS + R+ EV+ L +I E +D I+ + S+ V ++ DL+ YIS L +
Sbjct: 3 KNSIKNTRINGEVQRELSNII-RGEIKDPRIN-PLTSVVAVEVAPDLKTCKAYISVLGDE 60
Query: 66 VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
S + ++ L FIR ++ +++ NLR PE+RF D S++ K++ ++
Sbjct: 61 ESQAKTLAGLKSAEGFIRSKLAKTV-NLRNTPEIRFVLDQSIEYGVKMSKMI 111
>gi|251772262|gb|EES52832.1| ribosome-binding factor A [Leptospirillum ferrodiazotrophum]
Length = 120
Score = 43.5 bits (101), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 54/108 (50%), Gaps = 4/108 (3%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPD 69
RRA RV E+R + V+ + R+ S ++I+ V +S DLR ATV+ ++ P
Sbjct: 8 RRADRVASEIREIMATVVARYFREPRIAS---VTITRVRLSDDLRNATVFFAVFPGEDPQ 64
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ L + +R + R LR ++Y+P L F +D ++ +L
Sbjct: 65 SMGEILERHSPILRKEMARQLR-IKYIPRLSFVHDNGNDEEGRIESLF 111
>gi|152995059|ref|YP_001339894.1| ribosome-binding factor A [Marinomonas sp. MWYL1]
gi|189039546|sp|A6VU30|RBFA_MARMS RecName: Full=Ribosome-binding factor A
gi|150835983|gb|ABR69959.1| ribosome-binding factor A [Marinomonas sp. MWYL1]
Length = 129
Score = 43.5 bits (101), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 65/111 (58%), Gaps = 8/111 (7%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
R R+G++++ L +I +F+ + +++++EV ++ DL A +Y + L D P+
Sbjct: 7 RTSRIGDQLQKELASLI---QFEVKDPRLGLVTVNEVRVAKDLGYADIYYTVLGKDDQPE 63
Query: 70 RVI---SALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ +AL+ F+R R+ + ++ LR +P LRF YD S+ + +++AL+
Sbjct: 64 VLAENQAALDSAKGFLRRRLAQEVK-LRVMPHLRFHYDQSVVNGSRMSALI 113
>gi|329942816|ref|ZP_08291595.1| ribosome-binding factor A [Chlamydophila psittaci Cal10]
gi|332287408|ref|YP_004422309.1| ribosome-binding factor A [Chlamydophila psittaci 6BC]
gi|313847988|emb|CBY16985.1| ribosome-binding factor A [Chlamydophila psittaci RD1]
gi|325507251|gb|ADZ18889.1| ribosome-binding factor A [Chlamydophila psittaci 6BC]
gi|328815076|gb|EGF85065.1| ribosome-binding factor A [Chlamydophila psittaci Cal10]
gi|328914657|gb|AEB55490.1| ribosome-binding factor A [Chlamydophila psittaci 6BC]
Length = 120
Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 52/94 (55%), Gaps = 3/94 (3%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVS 67
+RR +V +R A+ VIL + + IS I+++ VC+S DL A VY+S +P + +
Sbjct: 4 NRRIQKVNSLLREAIANVILKDVKHPK-ISNRWITVTRVCLSKDLHSARVYVSIMPHENT 62
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRF 101
+ AL + ++I + + + L+Y PE+ F
Sbjct: 63 STETLEALKASARYIAYKASKGVV-LKYFPEINF 95
>gi|119509684|ref|ZP_01628830.1| ribosome-binding factor A [Nodularia spumigena CCY9414]
gi|119465703|gb|EAW46594.1| ribosome-binding factor A [Nodularia spumigena CCY9414]
Length = 142
Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 59/109 (54%), Gaps = 3/109 (2%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDVSP 68
RR RV E ++ + ++L+ DR + ++S++ V +S DL+ A VY+S+ + +
Sbjct: 5 RRISRVAELIKREVSQMLLHGIKDDR-VGTGMVSVTYVDVSGDLQHAKVYVSIYGTESAK 63
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
++ L F+R +G +R LR PE+ F D S++ K+ +L+
Sbjct: 64 SETMAGLKSATGFVRSELGSRVR-LRRTPEVIFIEDDSIEQGNKVLSLL 111
>gi|124024898|ref|YP_001014014.1| ribosome-binding factor A [Prochlorococcus marinus str. NATL1A]
gi|166219387|sp|A2BZT9|RBFA_PROM1 RecName: Full=Ribosome-binding factor A
gi|123959966|gb|ABM74749.1| Ribosome-binding factor A [Prochlorococcus marinus str. NATL1A]
Length = 123
Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 56/101 (55%), Gaps = 3/101 (2%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDV 66
NSRR ++ ++ + +++N +D I + +I+I+ V +S DL+ A ++ISL +
Sbjct: 3 NSRRVEKLAALLKREISELLVNG-IRDERIHQAMITITSVEVSGDLQHARIFISLFGEEK 61
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSL 107
D+V+ L FIR + R L+ +R PEL F+ D +
Sbjct: 62 KKDQVLVGLEEAKGFIRAELARRLQ-MRRSPELVFKIDKGM 101
>gi|254525665|ref|ZP_05137717.1| ribosome-binding factor A [Prochlorococcus marinus str. MIT 9202]
gi|221537089|gb|EEE39542.1| ribosome-binding factor A [Prochlorococcus marinus str. MIT 9202]
Length = 130
Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Query: 24 MWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI-SLPLDVSPDRVISALNCNIKFI 82
+ +IL N+ ++ LI ++IS++ +S DL+ +YI S + ++S LN FI
Sbjct: 18 ITLILQNDLENDLIRDHFVNISKIDLSGDLQHCKIYITSTAQEKVRKEIVSNLNTAKSFI 77
Query: 83 RGRIGRSLRNLRYVPELRFRYDTSL 107
R +G+ + +R VPE+ F+ D L
Sbjct: 78 RHSLGKRIE-MRRVPEIIFKEDVVL 101
>gi|116618449|ref|YP_818820.1| ribosome-binding factor A [Leuconostoc mesenteroides subsp.
mesenteroides ATCC 8293]
gi|227431855|ref|ZP_03913879.1| ribosome-binding factor A [Leuconostoc mesenteroides subsp.
cremoris ATCC 19254]
gi|122271351|sp|Q03WH5|RBFA_LEUMM RecName: Full=Ribosome-binding factor A
gi|116097296|gb|ABJ62447.1| ribosome-binding factor A [Leuconostoc mesenteroides subsp.
mesenteroides ATCC 8293]
gi|227352397|gb|EEJ42599.1| ribosome-binding factor A [Leuconostoc mesenteroides subsp.
cremoris ATCC 19254]
Length = 117
Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 56/103 (54%), Gaps = 6/103 (5%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS 67
N +RA R+ +EV+ + ++L R+ ++++ V +S DL++AT+Y S+ D++
Sbjct: 3 NPQRAGRLAQEVQRDVTDLLLKRINDPRVKE---VTVTSVELSGDLQIATIYYSILSDLA 59
Query: 68 PD--RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
D + + L IR +G L + PEL+F DTS+Q
Sbjct: 60 SDAKKTQAGLEAASGLIRKELGSRL-TVYKTPELKFVRDTSVQ 101
>gi|310778375|ref|YP_003966708.1| ribosome-binding factor A [Ilyobacter polytropus DSM 2926]
gi|309747698|gb|ADO82360.1| ribosome-binding factor A [Ilyobacter polytropus DSM 2926]
Length = 117
Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 48/83 (57%), Gaps = 5/83 (6%)
Query: 39 RDVISISEVCMSVDLRVATVYIS-LPL---DVSPDRVISALNCNIKFIRGRIGRSLRNLR 94
+ ++S++ V ++ DL+ V S LP+ V+ + V+ LN + R RIG ++ +R
Sbjct: 31 KGIVSVTHVRVTQDLKFVDVSFSVLPMAGQTVNRETVLKGLNETRGYFRKRIGEEIK-IR 89
Query: 95 YVPELRFRYDTSLQSYWKLNALM 117
+VPE+R D S++ K++ L+
Sbjct: 90 FVPEVRVHLDDSIEHAVKISKLL 112
>gi|160947560|ref|ZP_02094727.1| hypothetical protein PEPMIC_01495 [Parvimonas micra ATCC 33270]
gi|158446694|gb|EDP23689.1| hypothetical protein PEPMIC_01495 [Parvimonas micra ATCC 33270]
Length = 132
Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 57/111 (51%), Gaps = 3/111 (2%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV- 66
N++R R+ E+ L I N +D I + +I++V ++ DL + V I + D
Sbjct: 2 NAKRLGRIESEINRVLSDAIYNG-IKDNRIDPSITNITKVSVTNDLGICYVSIGVFGDTK 60
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ ++ + L +++ RI +L +LR+ P+L F+ D S + +N L+
Sbjct: 61 TKEKTMKGLESATGYMKKRISETL-DLRHTPKLIFKLDESFEKAALMNELI 110
>gi|62185079|ref|YP_219864.1| ribosome-binding factor A [Chlamydophila abortus S26/3]
gi|81312755|sp|Q5L628|RBFA_CHLAB RecName: Full=Ribosome-binding factor A
gi|62148146|emb|CAH63903.1| ribosome-binding factor A [Chlamydophila abortus S26/3]
Length = 120
Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 52/94 (55%), Gaps = 3/94 (3%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVS 67
+RR +V +R A+ VIL + + IS I+++ VC+S DL A VY+S +P + +
Sbjct: 4 NRRIKKVNSLLREAIANVILKDVKHPK-ISNRWITVTRVCLSKDLHSARVYVSIMPHENT 62
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRF 101
+ AL + ++I + + + L+Y PE+ F
Sbjct: 63 STETLEALKASARYIAYKASKGVV-LKYFPEINF 95
>gi|325299551|ref|YP_004259468.1| ribosome-binding factor A [Bacteroides salanitronis DSM 18170]
gi|324319104|gb|ADY36995.1| ribosome-binding factor A [Bacteroides salanitronis DSM 18170]
Length = 111
Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 33 QDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLR- 91
Q R + ++S+S V +S D+ A Y+S+ + ++ +N N+K IR +G+ +R
Sbjct: 24 QTRAMHGVLVSVSVVRISPDMSYARGYLSVFPSERAEEIVKNINDNVKSIRYELGKRVRF 83
Query: 92 NLRYVPELRFRYDTSLQSYWKLNALM 117
LR +PEL+F D SL ++ L+
Sbjct: 84 QLRIIPELKFFVDDSLDYAAHIDELL 109
>gi|189459725|ref|ZP_03008510.1| hypothetical protein BACCOP_00353 [Bacteroides coprocola DSM 17136]
gi|189433572|gb|EDV02557.1| hypothetical protein BACCOP_00353 [Bacteroides coprocola DSM 17136]
Length = 111
Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 41 VISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRN-LRYVPEL 99
++S+S V +S D+ A VY+S+ + ++ +N N+K IR +G +R+ LR +PEL
Sbjct: 32 LVSVSVVRISPDMSYARVYLSVFPSERSEEIVKNINDNMKSIRFELGNRVRHQLRIIPEL 91
Query: 100 RFRYDTSLQSYWKLNALM 117
+F D SL ++ L+
Sbjct: 92 KFFVDDSLDYAAHIDELL 109
>gi|238020387|ref|ZP_04600813.1| hypothetical protein GCWU000324_00267 [Kingella oralis ATCC 51147]
gi|237867367|gb|EEP68373.1| hypothetical protein GCWU000324_00267 [Kingella oralis ATCC 51147]
Length = 125
Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 63/129 (48%), Gaps = 13/129 (10%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
MK + R RV E++ L ++ E +D +I+I++V ++ D ATVY
Sbjct: 1 MKKQQRNGYARVDRVKEQIMRELAELV-RTELKDPRAG--LITINDVEVTRDYSHATVYY 57
Query: 61 SLPLDVSPDRVISA--LNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM- 117
++ ++ DR SA L F+R ++ R + R VPEL F YD SL+ L+ L+
Sbjct: 58 TV---LNGDRAASAEALEHAKGFLRSKLSRRITVFR-VPELHFEYDHSLERGMTLSHLIE 113
Query: 118 ---CLPKIP 123
P +P
Sbjct: 114 QAAAEPDVP 122
>gi|326516090|dbj|BAJ88068.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 212
Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 48/76 (63%), Gaps = 3/76 (3%)
Query: 34 DRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRV-ISALNCNIKFIRGRIGRSLRN 92
DR +S + +I++V +S DL+V VY+S+ D +V ++ L K++R +IG+ ++
Sbjct: 84 DRYLS-SLTTIADVELSNDLQVCKVYVSVFGDERGKKVAMAGLKDKTKYVRSQIGKRMK- 141
Query: 93 LRYVPELRFRYDTSLQ 108
LR PE+RF D S++
Sbjct: 142 LRLTPEIRFIEDESME 157
>gi|257463894|ref|ZP_05628280.1| ribosome-binding factor A [Fusobacterium sp. D12]
gi|317061423|ref|ZP_07925908.1| ribosome-binding factor A [Fusobacterium sp. D12]
gi|313687099|gb|EFS23934.1| ribosome-binding factor A [Fusobacterium sp. D12]
Length = 122
Score = 43.5 bits (101), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 49/87 (56%), Gaps = 9/87 (10%)
Query: 39 RDVISISEVCMSVDLRVATVYISL--PL------DVSPDRVISALNCNIKFIRGRIGRSL 90
R ++S+++V ++ DL+ A Y S+ P+ + ++++ AL F+R RI +
Sbjct: 31 RGLVSVTKVRVTEDLKFADTYFSIMPPIASEGQKTIEREKILEALEEVRGFLRKRIAEEI 90
Query: 91 RNLRYVPELRFRYDTSLQSYWKLNALM 117
NLR++PE+R + D S++ + L+
Sbjct: 91 -NLRFIPEIRVKLDDSIEHAIHITKLL 116
>gi|227890637|ref|ZP_04008442.1| ribosome-binding factor A [Lactobacillus salivarius ATCC 11741]
gi|227867575|gb|EEJ74996.1| ribosome-binding factor A [Lactobacillus salivarius ATCC 11741]
Length = 119
Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 45/78 (57%), Gaps = 3/78 (3%)
Query: 42 ISISEVCMSVDLRVATVYISLPLDVSPD--RVISALNCNIKFIRGRIGRSLRNLRYVPEL 99
++I+ V +S DL+ AT+Y S+ D + D +V + L+ IRG +G L ++ PE+
Sbjct: 34 VTITGVEVSGDLQHATIYYSILSDKASDEKKVQTGLDKATSLIRGELGHRL-SIYVTPEI 92
Query: 100 RFRYDTSLQSYWKLNALM 117
+F D S+Q ++ L+
Sbjct: 93 KFERDKSVQYGDHIDELL 110
>gi|292486838|ref|YP_003529708.1| ribosome-binding factor A [Erwinia amylovora CFBP1430]
gi|292900764|ref|YP_003540133.1| ribosome-binding factor A [Erwinia amylovora ATCC 49946]
gi|291200612|emb|CBJ47744.1| ribosome-binding factor A [Erwinia amylovora ATCC 49946]
gi|291552255|emb|CBA19292.1| Ribosome-binding factor A [Erwinia amylovora CFBP1430]
gi|312170906|emb|CBX79165.1| Ribosome-binding factor A [Erwinia amylovora ATCC BAA-2158]
Length = 137
Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 61/115 (53%), Gaps = 6/115 (5%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
K R RV +E++ + +IL E +D + ++++S V +S DL A V+++ D
Sbjct: 3 KEFGRPQRVSQELQKEI-AIILQREIKDPRLGM-MVTVSGVDVSRDLAYAKVFVTFLNDK 60
Query: 67 SPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ + AL +IR +G+++R LR VPEL F YD SL +++ L+
Sbjct: 61 DEAAIKAGLRALGDASGYIRTLLGKAMR-LRIVPELTFFYDNSLVEGMRMSNLVT 114
>gi|298493008|ref|YP_003723185.1| ribosome-binding factor A ['Nostoc azollae' 0708]
gi|298234926|gb|ADI66062.1| ribosome-binding factor A ['Nostoc azollae' 0708]
Length = 132
Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 60/111 (54%), Gaps = 3/111 (2%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDV 66
+RR RV E ++ + ++LN DR + ++S+++V +S DL+ A +++S+
Sbjct: 3 TNRRVSRVAELIKREVSQMLLNGIKDDR-VGTGMVSVTDVDVSGDLQHAKIFVSIYGTQE 61
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ ++ L ++R +G +R LR PE+ F D SL+ K+ +L+
Sbjct: 62 AKAETMAGLKSATGYVRSELGARVR-LRRTPEVIFVEDRSLERGTKVLSLL 111
>gi|303271249|ref|XP_003054986.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226462960|gb|EEH60238.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 160
Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 67/122 (54%), Gaps = 13/122 (10%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEF-------QDRLISRDVISI----SEVCMSVDLRVA 56
N RR +V +++R + ++ ++ ++R+ +VIS+ ++V +S DL+V
Sbjct: 6 NPRRVAKVQQQMRREISNMLQTDKNLRNMISPEERMGVDNVISVMATVADVEVSNDLQVV 65
Query: 57 TVYISLPLDVSPDR-VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNA 115
V++S+ D + I+ L ++R IG+ + +LR PE+RF YD S + K++A
Sbjct: 66 KVFVSILGDERGKKNAINGLKKMEGYVRRNIGKKV-SLRLTPEIRFVYDDSFERGQKVSA 124
Query: 116 LM 117
L+
Sbjct: 125 LL 126
>gi|188532505|ref|YP_001906302.1| ribosome-binding factor A [Erwinia tasmaniensis Et1/99]
gi|238689698|sp|B2VGN3|RBFA_ERWT9 RecName: Full=Ribosome-binding factor A
gi|188027547|emb|CAO95394.1| Ribosome-binding factor A [Erwinia tasmaniensis Et1/99]
Length = 137
Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 61/115 (53%), Gaps = 6/115 (5%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
K R RV +E++ + +IL E +D + ++++S V +S DL A V+++ D
Sbjct: 3 KEFGRPQRVSQELQKEI-AIILQREIKDPRLGM-MVTVSGVDVSRDLAYAKVFVTFLNDK 60
Query: 67 SPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ + AL +IR +G+++R LR VPEL F YD SL +++ L+
Sbjct: 61 DEAAIKGGLRALGDASGYIRTLLGKAMR-LRIVPELTFFYDNSLVEGMRMSNLVT 114
>gi|319760249|ref|YP_004124187.1| ribosome-binding factor A [Candidatus Blochmannia vafer str. BVAF]
gi|318038963|gb|ADV33513.1| ribosome-binding factor A [Candidatus Blochmannia vafer str. BVAF]
Length = 122
Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 57/104 (54%), Gaps = 7/104 (6%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
+ S R R+ +E++ + VI+ + D I V +IS V +S DLR A V+I+
Sbjct: 4 RRSNRIQRISQEIQRKI-SVIIQQKVHDPRIG--VPTISGVQVSKDLRYAKVFITFLDKN 60
Query: 67 SPDRVISALNCNIK---FIRGRIGRSLRNLRYVPELRFRYDTSL 107
S + + SA+ K FIR + RS+ N R +P L F+YD+SL
Sbjct: 61 SSEEINSAIAILQKASCFIRFLLARSV-NFRIIPILSFKYDSSL 103
>gi|259907043|ref|YP_002647399.1| ribosome-binding factor A [Erwinia pyrifoliae Ep1/96]
gi|224962665|emb|CAX54120.1| Ribosome-binding factor A [Erwinia pyrifoliae Ep1/96]
gi|283476839|emb|CAY72677.1| rbfA [Erwinia pyrifoliae DSM 12163]
gi|310766255|gb|ADP11205.1| ribosome-binding factor A [Erwinia sp. Ejp617]
Length = 137
Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 61/115 (53%), Gaps = 6/115 (5%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
K R RV +E++ + +IL E +D + ++++S V +S DL A V+++ D
Sbjct: 3 KEFGRPQRVSQELQKEI-AIILQREIKDPRLGM-MVTVSGVDVSRDLAYAKVFVTFLNDK 60
Query: 67 SPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ + AL +IR +G+++R LR VPEL F YD SL +++ L+
Sbjct: 61 DEAAIKAGLRALGDASGYIRTLLGKAMR-LRIVPELTFFYDNSLVEGMRMSNLVT 114
>gi|291562549|emb|CBL41365.1| ribosome-binding factor A [butyrate-producing bacterium SS3/4]
Length = 131
Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 61/112 (54%), Gaps = 4/112 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
KNS + +R+ EV+ AL +I +E +D + + S+ +V ++ DL++ YIS+ D
Sbjct: 3 KNSVKNIRINGEVQKALSEII-RSELKDPRV-HPMTSVVQVSVTPDLKICKAYISVLADE 60
Query: 67 SPDR-VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ I L FIR ++ + + NLR P++ F D S++ +++ L+
Sbjct: 61 EQAKDTIRGLKSAEGFIRTQLAKKV-NLRNTPQIFFVLDQSIEYGVRMSKLI 111
>gi|189183521|ref|YP_001937306.1| ribosome-binding factor A [Orientia tsutsugamushi str. Ikeda]
gi|189180292|dbj|BAG40072.1| ribosome-binding factor A [Orientia tsutsugamushi str. Ikeda]
Length = 120
Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 54/107 (50%), Gaps = 6/107 (5%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
MK S + LR +R AL+ V+ +N+ L I++++V + YI
Sbjct: 1 MKKIYQAKSYKTLRTANMIRLALIDVLHSNKLHTDLFECK-ITVTKVLAQAGQGMYHCYI 59
Query: 61 SLPLD---VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYD 104
LP VS D+++ A+N ++ IR I + + NL+Y PELR YD
Sbjct: 60 -LPFSNSKVSQDKLMHAINDSLPIIRRMITQKI-NLKYSPELRIFYD 104
>gi|257452232|ref|ZP_05617531.1| ribosome-binding factor A [Fusobacterium sp. 3_1_5R]
gi|257465973|ref|ZP_05630284.1| ribosome-binding factor A [Fusobacterium gonidiaformans ATCC 25563]
gi|315917129|ref|ZP_07913369.1| ribosome-binding factor A [Fusobacterium gonidiaformans ATCC 25563]
gi|317058775|ref|ZP_07923260.1| ribosome-binding factor A [Fusobacterium sp. 3_1_5R]
gi|313684451|gb|EFS21286.1| ribosome-binding factor A [Fusobacterium sp. 3_1_5R]
gi|313691004|gb|EFS27839.1| ribosome-binding factor A [Fusobacterium gonidiaformans ATCC 25563]
Length = 122
Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 48/87 (55%), Gaps = 9/87 (10%)
Query: 39 RDVISISEVCMSVDLRVATVYISL--PLD------VSPDRVISALNCNIKFIRGRIGRSL 90
R ++S+++V ++ DL+ A Y S+ P+ V ++++ AL F R RI +
Sbjct: 31 RGLVSVTKVRVTEDLKFADTYFSIMPPIASEGQKPVEREKILEALEEVRGFFRKRIAEEI 90
Query: 91 RNLRYVPELRFRYDTSLQSYWKLNALM 117
NLR+VPE+R + D S++ + L+
Sbjct: 91 -NLRFVPEVRVKLDDSIEHAIHITKLL 116
>gi|237736661|ref|ZP_04567142.1| ribosome-binding factor A [Fusobacterium mortiferum ATCC 9817]
gi|229420523|gb|EEO35570.1| ribosome-binding factor A [Fusobacterium mortiferum ATCC 9817]
Length = 120
Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 47/86 (54%), Gaps = 8/86 (9%)
Query: 39 RDVISISEVCMSVDLRVATVYISL-------PLDVSPDRVISALNCNIKFIRGRIGRSLR 91
R ++S++ + ++ DL+ A VY S+ V + V+ LN ++R R+ +
Sbjct: 31 RGLVSVTNIRVTEDLKFADVYFSIMSGQMNGEKAVDKETVLEGLNQIKGYLRKRVAEEI- 89
Query: 92 NLRYVPELRFRYDTSLQSYWKLNALM 117
+RY+PE+R + D S++ K++ L+
Sbjct: 90 EIRYIPEIRVKLDDSIEHAIKISKLL 115
>gi|304384251|ref|ZP_07366662.1| ribosome-binding factor A [Prevotella marshii DSM 16973]
gi|304334567|gb|EFM00849.1| ribosome-binding factor A [Prevotella marshii DSM 16973]
Length = 154
Score = 43.1 bits (100), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 33 QDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRN 92
Q R + ++S++ +S DL + T Y+S+ + ++ +N N + IR +G +RN
Sbjct: 54 QTRSMHGVMVSVTRCRISPDLSICTGYLSIFPSERGEEILKNINANAQTIRYDLGTRVRN 113
Query: 93 -LRYVPELRFRYDTSLQSYWKLNALM 117
LR +PE+RF D SL K++ L+
Sbjct: 114 QLRIIPEVRFFLDDSLDYIEKIDRLL 139
>gi|114331631|ref|YP_747853.1| ribosome-binding factor A [Nitrosomonas eutropha C91]
gi|122313590|sp|Q0AFJ4|RBFA_NITEC RecName: Full=Ribosome-binding factor A
gi|114308645|gb|ABI59888.1| ribosome-binding factor A [Nitrosomonas eutropha C91]
Length = 117
Score = 43.1 bits (100), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 60/113 (53%), Gaps = 5/113 (4%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATV-YISLPL 64
PK+ R LRV ++V+ L +I NE D I +I+++ V ++ D A V Y +L
Sbjct: 2 PKDFSRTLRVADQVQRELASLI-QNEIMDPRIG--MITLTGVEVTRDYTYAKVFYTTLGG 58
Query: 65 DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ + L F+R ++ +R LR +P+L+F YD S++ KL+ L+
Sbjct: 59 NENAQLAEEGLKRAAGFLRSQLAGKIR-LRIIPKLQFVYDESIERGIKLSRLI 110
>gi|295136509|ref|YP_003587185.1| ribosome-binding factor A [Zunongwangia profunda SM-A87]
gi|294984524|gb|ADF54989.1| ribosome-binding factor A [Zunongwangia profunda SM-A87]
Length = 130
Score = 42.7 bits (99), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 61/118 (51%), Gaps = 2/118 (1%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
+ R ++G ++ L ILNN +D I+ +IS+S+V ++ DL +A Y+S+
Sbjct: 3 TNRQKKIGGVLQKDLAE-ILNNNLRDAGINGILISVSKVKVTTDLSIAKAYLSVFPQKHA 61
Query: 69 DRVISALNCNIKFIRGRIG-RSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
+++ LN I+ ++ R+ LR +P+L F D SL+ + M + P++
Sbjct: 62 GDILTELNEVKSKIKHQMALRTKNQLRKMPDLSFFIDDSLEYIENIEKSMKGDENPIS 119
>gi|228473890|ref|ZP_04058632.1| ribosome-binding factor A [Capnocytophaga gingivalis ATCC 33624]
gi|228274731|gb|EEK13565.1| ribosome-binding factor A [Capnocytophaga gingivalis ATCC 33624]
Length = 130
Score = 42.7 bits (99), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 27 ILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRI 86
IL Q+ ++ ++S+++V ++VDL +A VYIS+ ++ A+ N I+ +
Sbjct: 20 ILGRAVQNGGLTNLILSVTKVAITVDLTLAKVYISVFPSEQGKEILKAIQSNSFQIKHEV 79
Query: 87 GRSLRN-LRYVPELRFRYDTSLQ 108
+ +R+ LR +P+L F D SL+
Sbjct: 80 AQRVRHQLRKMPDLSFFLDDSLE 102
>gi|56707230|ref|YP_169126.1| ribosome-binding factor A [Francisella tularensis subsp. tularensis
SCHU S4]
gi|89257071|ref|YP_514433.1| ribosome-binding factor A [Francisella tularensis subsp. holarctica
LVS]
gi|110669700|ref|YP_666257.1| ribosome-binding factor A [Francisella tularensis subsp. tularensis
FSC198]
gi|115315427|ref|YP_764150.1| ribosome-binding factor A [Francisella tularensis subsp. holarctica
OSU18]
gi|134301265|ref|YP_001121233.1| ribosome-binding factor A [Francisella tularensis subsp. tularensis
WY96-3418]
gi|156503281|ref|YP_001429346.1| ribosome-binding factor A [Francisella tularensis subsp. holarctica
FTNF002-00]
gi|167009458|ref|ZP_02274389.1| ribosome-binding factor A [Francisella tularensis subsp. holarctica
FSC200]
gi|187931007|ref|YP_001890991.1| ribosome-binding factor A [Francisella tularensis subsp.
mediasiatica FSC147]
gi|224456291|ref|ZP_03664764.1| ribosome-binding factor A [Francisella tularensis subsp. tularensis
MA00-2987]
gi|254368309|ref|ZP_04984328.1| ribosome binding factor A [Francisella tularensis subsp. holarctica
257]
gi|254369908|ref|ZP_04985917.1| ribosome-binding factor A [Francisella tularensis subsp. holarctica
FSC022]
gi|254369915|ref|ZP_04985923.1| ribosome-binding factor A [Francisella tularensis subsp. tularensis
FSC033]
gi|254874069|ref|ZP_05246779.1| ribosome-binding factor A [Francisella tularensis subsp. tularensis
MA00-2987]
gi|290954353|ref|ZP_06558974.1| ribosome-binding factor A [Francisella tularensis subsp. holarctica
URFT1]
gi|295312217|ref|ZP_06803017.1| ribosome-binding factor A [Francisella tularensis subsp. holarctica
URFT1]
gi|61214713|sp|Q5NIL6|RBFA_FRATT RecName: Full=Ribosome-binding factor A
gi|122324587|sp|Q0BK71|RBFA_FRATO RecName: Full=Ribosome-binding factor A
gi|122500221|sp|Q2A1G9|RBFA_FRATH RecName: Full=Ribosome-binding factor A
gi|123063628|sp|Q14K19|RBFA_FRAT1 RecName: Full=Ribosome-binding factor A
gi|166218438|sp|A7NEI7|RBFA_FRATF RecName: Full=Ribosome-binding factor A
gi|166218440|sp|A4IW11|RBFA_FRATW RecName: Full=Ribosome-binding factor A
gi|238691527|sp|B2SEW8|RBFA_FRATM RecName: Full=Ribosome-binding factor A
gi|54114151|gb|AAV29709.1| NT02FT1759 [synthetic construct]
gi|56603722|emb|CAG44684.1| Ribosome-binding factor A [Francisella tularensis subsp. tularensis
SCHU S4]
gi|89144902|emb|CAJ80247.1| Ribosome-binding factor A [Francisella tularensis subsp. holarctica
LVS]
gi|110320033|emb|CAL08067.1| Ribosome-binding factor A [Francisella tularensis subsp. tularensis
FSC198]
gi|115130326|gb|ABI83513.1| ribosome-binding factor A [Francisella tularensis subsp. holarctica
OSU18]
gi|134049042|gb|ABO46113.1| ribosome-binding factor A [Francisella tularensis subsp. tularensis
WY96-3418]
gi|134254118|gb|EBA53212.1| ribosome binding factor A [Francisella tularensis subsp. holarctica
257]
gi|151568161|gb|EDN33815.1| ribosome-binding factor A [Francisella tularensis subsp. tularensis
FSC033]
gi|156253884|gb|ABU62390.1| ribosome-binding factor A [Francisella tularensis subsp. holarctica
FTNF002-00]
gi|157122878|gb|EDO66995.1| ribosome-binding factor A [Francisella tularensis subsp. holarctica
FSC022]
gi|187711916|gb|ACD30213.1| ribosome-binding factor A [Francisella tularensis subsp.
mediasiatica FSC147]
gi|254840068|gb|EET18504.1| ribosome-binding factor A [Francisella tularensis subsp. tularensis
MA00-2987]
gi|282158338|gb|ADA77729.1| ribosome-binding factor A [Francisella tularensis subsp. tularensis
NE061598]
Length = 143
Score = 42.7 bits (99), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 6/85 (7%)
Query: 43 SISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFR 102
+I+EV +S DL A +Y + + + A + F R I +SL +LR VP L+F
Sbjct: 35 TITEVDLSKDLSYAKIYYTCLAIEDAEYIDKAFEKSKGFFRSSIAKSL-SLRIVPNLKFI 93
Query: 103 YDTSLQSYWKLNALMCLPKIPVALE 127
YDTSL ++ KI ALE
Sbjct: 94 YDTSLDYGMQME-----EKIQQALE 113
>gi|206889505|ref|YP_002249675.1| ribosome-binding factor A [Thermodesulfovibrio yellowstonii DSM
11347]
gi|226723613|sp|B5YHT9|RBFA_THEYD RecName: Full=Ribosome-binding factor A
gi|206741443|gb|ACI20500.1| ribosome-binding factor A [Thermodesulfovibrio yellowstonii DSM
11347]
Length = 118
Score = 42.7 bits (99), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 57/108 (52%), Gaps = 4/108 (3%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPD 69
+RA R+ ++ + +IL+ RL I++++V +S DLR+A V+IS+
Sbjct: 5 KRAQRLKVLLKEEVAEIILHKIKDPRL---GFITVTDVELSDDLRIAKVFISVLKTEDRQ 61
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ LN F+R I + LR ++ +P F +D S+ ++++ L+
Sbjct: 62 LTLQILNDAKGFVRSEIAKRLR-IKIIPTFEFLFDESIDRGFRIDQLL 108
>gi|218133593|ref|ZP_03462397.1| hypothetical protein BACPEC_01462 [Bacteroides pectinophilus ATCC
43243]
gi|217990968|gb|EEC56974.1| hypothetical protein BACPEC_01462 [Bacteroides pectinophilus ATCC
43243]
Length = 136
Score = 42.7 bits (99), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 62/118 (52%), Gaps = 4/118 (3%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
M+N KNS + R+ EV+ L +I +NE +D I + S+ V ++ DL+ YI
Sbjct: 1 MENDMRKNSIKNTRINGEVQRELSNII-HNEIKDPRI-HPMTSVVTVEVAPDLKTCKAYI 58
Query: 61 SLPLDVSPDR-VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
S+ D + I+ L +IR + ++ NLR PE+RF D S++ +++ L+
Sbjct: 59 SVLGDEKAQQDTIAGLKSAEGYIRRELAHTV-NLRNTPEIRFILDQSIEYGVRMSRLI 115
>gi|118498221|ref|YP_899271.1| ribosome-binding factor A [Francisella tularensis subsp. novicida
U112]
gi|194324405|ref|ZP_03058178.1| ribosome-binding factor A [Francisella tularensis subsp. novicida
FTE]
gi|208780248|ref|ZP_03247590.1| ribosome-binding factor A [Francisella novicida FTG]
gi|254373564|ref|ZP_04989051.1| ribosome-binding factor A [Francisella tularensis subsp. novicida
GA99-3549]
gi|254375029|ref|ZP_04990509.1| ribosome-binding factor A [Francisella novicida GA99-3548]
gi|166218439|sp|A0Q8F2|RBFA_FRATN RecName: Full=Ribosome-binding factor A
gi|118424127|gb|ABK90517.1| ribosome-binding factor A [Francisella novicida U112]
gi|151571289|gb|EDN36943.1| ribosome-binding factor A [Francisella novicida GA99-3549]
gi|151572747|gb|EDN38401.1| ribosome-binding factor A [Francisella novicida GA99-3548]
gi|194321470|gb|EDX18955.1| ribosome-binding factor A [Francisella tularensis subsp. novicida
FTE]
gi|208743897|gb|EDZ90199.1| ribosome-binding factor A [Francisella novicida FTG]
gi|332678957|gb|AEE88086.1| Ribosome-binding factor A [Francisella cf. novicida Fx1]
Length = 143
Score = 42.7 bits (99), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 6/85 (7%)
Query: 43 SISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFR 102
+I+EV +S DL A +Y + + + A + F R I +SL +LR VP L+F
Sbjct: 35 TITEVDLSKDLSYAKIYYTCLAIEDAEYIDKAFEKSKGFFRSSIAKSL-SLRIVPNLKFI 93
Query: 103 YDTSLQSYWKLNALMCLPKIPVALE 127
YDTSL ++ KI ALE
Sbjct: 94 YDTSLDYGMQME-----EKIQQALE 113
>gi|73667085|ref|YP_303101.1| ribosome-binding factor A [Ehrlichia canis str. Jake]
gi|72394226|gb|AAZ68503.1| ribosome-binding factor A [Ehrlichia canis str. Jake]
Length = 115
Score = 42.7 bits (99), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 61/109 (55%), Gaps = 7/109 (6%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRD-VISISEVCMSVDLRVATVYISLPLDVS-P 68
R L+V + A+ V++ QD +S + +I+IS+V +S D+R A V+I + D +
Sbjct: 9 RNLKVASVLNRAISKVLM----QDICLSNNHLITISKVEVSNDIRNANVFIIISQDCTDK 64
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ VI LN + FIR I + +LRY+P L F+ D + K+N ++
Sbjct: 65 EAVIKELNDSSYFIRKAIFPYV-DLRYIPRLYFKQDYCFDNLVKINQIL 112
>gi|315641139|ref|ZP_07896218.1| ribosome-binding factor A [Enterococcus italicus DSM 15952]
gi|315483147|gb|EFU73664.1| ribosome-binding factor A [Enterococcus italicus DSM 15952]
Length = 115
Score = 42.7 bits (99), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 46/78 (58%), Gaps = 3/78 (3%)
Query: 42 ISISEVCMSVDLRVATVYISLPLDVSPDRVIS--ALNCNIKFIRGRIGRSLRNLRYVPEL 99
++I++V ++ DL+ AT+Y S+ D++ DR + L + IR +G+ L +L PEL
Sbjct: 33 VTITDVHVTGDLQQATIYYSILSDLTSDRQKAQMGLEKSTGLIRRELGQGL-SLYKTPEL 91
Query: 100 RFRYDTSLQSYWKLNALM 117
F D S+Q K++ L+
Sbjct: 92 IFELDQSVQYGNKIDELL 109
>gi|332184776|gb|AEE27030.1| Ribosome-binding factor A [Francisella cf. novicida 3523]
Length = 143
Score = 42.7 bits (99), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 6/85 (7%)
Query: 43 SISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFR 102
+I+EV +S DL A +Y + + + A + F R I +SL +LR VP L+F
Sbjct: 35 TITEVDLSKDLSYAKIYYTCLAVEDAEYIDKAFEKSKGFFRSSIAKSL-SLRIVPNLKFI 93
Query: 103 YDTSLQSYWKLNALMCLPKIPVALE 127
YDTSL ++ KI ALE
Sbjct: 94 YDTSLDYGMQME-----EKIQQALE 113
>gi|71276361|ref|ZP_00652638.1| Ribosome-binding factor A [Xylella fastidiosa Dixon]
gi|71898656|ref|ZP_00680826.1| Ribosome-binding factor A [Xylella fastidiosa Ann-1]
gi|170729434|ref|YP_001774867.1| ribosome-binding factor A [Xylella fastidiosa M12]
gi|238687909|sp|B0U1Q9|RBFA_XYLFM RecName: Full=Ribosome-binding factor A
gi|71162823|gb|EAO12548.1| Ribosome-binding factor A [Xylella fastidiosa Dixon]
gi|71731603|gb|EAO33664.1| Ribosome-binding factor A [Xylella fastidiosa Ann-1]
gi|167964227|gb|ACA11237.1| ribosomal-binding factor A [Xylella fastidiosa M12]
Length = 125
Score = 42.7 bits (99), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 42 ISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRF 101
+S+S+V ++ D+ A V++++ ++ L + +R ++ +++R LR+VPEL F
Sbjct: 36 MSVSDVEVTRDMAHAKVFVTVLQAERSFEAVAGLKALARELRMQLAQTMR-LRFVPELHF 94
Query: 102 RYDTSLQSYWKLNALM 117
YD SL ++N L+
Sbjct: 95 HYDDSLDRGERINTLL 110
>gi|51246464|ref|YP_066348.1| ribosome-binding factor A [Desulfotalea psychrophila LSv54]
gi|61214924|sp|Q6AJY5|RBFA_DESPS RecName: Full=Ribosome-binding factor A
gi|50877501|emb|CAG37341.1| related to ribosome-binding factor A [Desulfotalea psychrophila
LSv54]
Length = 140
Score = 42.7 bits (99), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 52/107 (48%), Gaps = 19/107 (17%)
Query: 10 RRALRVGEEVRSALMWVILNN----EFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
+R+ RV + +R L ++L + QD + IS V + DL + +Y ++
Sbjct: 22 KRSTRVADAIRKELAVLLLEKIRDPKLQD-------VGISRVTATDDLTIVKIYYTI--- 71
Query: 66 VSPDRVISALN----CNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
P + + A++ FIR + R+L N+RY P L+F YD + +
Sbjct: 72 YGPHKHVKAVDKAFLAATGFIRSHLARTL-NMRYTPNLQFCYDKTAE 117
>gi|77165584|ref|YP_344109.1| ribosome-binding factor A [Nitrosococcus oceani ATCC 19707]
gi|254433845|ref|ZP_05047353.1| ribosome-binding factor A [Nitrosococcus oceani AFC27]
gi|123593841|sp|Q3J9B7|RBFA_NITOC RecName: Full=Ribosome-binding factor A
gi|76883898|gb|ABA58579.1| ribosome-binding factor A [Nitrosococcus oceani ATCC 19707]
gi|207090178|gb|EDZ67449.1| ribosome-binding factor A [Nitrosococcus oceani AFC27]
Length = 127
Score = 42.7 bits (99), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 59/108 (54%), Gaps = 5/108 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
RA RVGE ++ L + E +D + ++++S V +S DLR A Y++ L +
Sbjct: 7 RARRVGELLQRELAR-LFQEELKDPRVK--LVTVSHVRVSPDLRQAKAYVTFLGKEEDTQ 63
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
++ LN F++ + + + LR +P L+F YD S++ +L+AL+
Sbjct: 64 EQLAVLNKAAGFLQHGLSQRV-ELRVIPRLQFVYDDSIERGRRLSALI 110
>gi|160892793|ref|ZP_02073583.1| hypothetical protein CLOL250_00324 [Clostridium sp. L2-50]
gi|156865834|gb|EDO59265.1| hypothetical protein CLOL250_00324 [Clostridium sp. L2-50]
Length = 129
Score = 42.7 bits (99), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 55/103 (53%), Gaps = 4/103 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
KNS + R+ EV+ L +I + E +D I+ + S+ E ++ DL+ YIS+ D
Sbjct: 3 KNSVKNTRINAEVQRELSRII-SREIKDPRIN-PMTSVVEAVVTPDLKYCKAYISVLGDQ 60
Query: 67 -SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
S + + LN + FIR + S+ NLR PE+ F D S++
Sbjct: 61 DSVNSTLEGLNSAMGFIRRELAHSI-NLRNTPEITFIMDQSIE 102
>gi|254411561|ref|ZP_05025337.1| ribosome-binding factor A [Microcoleus chthonoplastes PCC 7420]
gi|196181283|gb|EDX76271.1| ribosome-binding factor A [Microcoleus chthonoplastes PCC 7420]
Length = 132
Score = 42.4 bits (98), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 60/111 (54%), Gaps = 3/111 (2%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDV 66
+RR RV ++ + ++L++ DR + ++S+++V +S DL+ A +Y+S+ +
Sbjct: 3 TNRRVSRVSSLIQQEVSQMLLHDIKDDR-VGAGMVSVTDVDVSGDLQHAKIYVSIYGTEE 61
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ ++ L F+R +GR +R LR PE+ F D L+ ++ L+
Sbjct: 62 AKSETMAGLQSATGFVRRELGRRVR-LRRTPEVVFIEDRGLERGARMLTLL 111
>gi|326335659|ref|ZP_08201846.1| ribosome-binding factor A [Capnocytophaga sp. oral taxon 338 str.
F0234]
gi|325692425|gb|EGD34377.1| ribosome-binding factor A [Capnocytophaga sp. oral taxon 338 str.
F0234]
Length = 130
Score = 42.4 bits (98), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 27 ILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRI 86
IL Q ++ +IS+++V ++VDL +A VYIS+ + ++SA+ N I+ +
Sbjct: 20 ILGRAVQAGGLTNLIISVTKVAVTVDLTLAKVYISVFPNERGVEILSAIQSNNSQIKHEV 79
Query: 87 GRSLR-NLRYVPELRFRYDTSLQ 108
+ R LR +P+L F D SL+
Sbjct: 80 AQRTRYQLRKMPDLSFFLDDSLE 102
>gi|291519302|emb|CBK74523.1| ribosome-binding factor A [Butyrivibrio fibrisolvens 16/4]
Length = 124
Score = 42.4 bits (98), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 56/112 (50%), Gaps = 4/112 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLD 65
KNS + R+ EEV L +I E +D IS V S+ V ++ DL+ YIS L D
Sbjct: 3 KNSVKNTRINEEVMRELSNII-RLEVKDPRIS-PVTSVVSVEVAPDLKTCKAYISVLGDD 60
Query: 66 VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ + I L + FIR + + NLR PE+ F D S+ K++ L+
Sbjct: 61 EAVAKTIEGLKSSAGFIRRELAHRI-NLRNTPEITFVSDQSIAYAAKMSKLI 111
>gi|303232067|ref|ZP_07318770.1| ribosome-binding factor A [Veillonella atypica ACS-049-V-Sch6]
gi|302513173|gb|EFL55212.1| ribosome-binding factor A [Veillonella atypica ACS-049-V-Sch6]
Length = 118
Score = 42.4 bits (98), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 43 SISEVCMSVDLRVATVYISL-PLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRF 101
++++V ++ DLR AT+Y+SL D + + AL +R +G+ L+ LR++P + F
Sbjct: 34 TVTDVHVTGDLREATIYVSLFGSDKEKEDTLIALKHASGHVRTELGKVLK-LRHIPTITF 92
Query: 102 RYDTSLQSYWKLNALM 117
D+SL + +L+
Sbjct: 93 DKDSSLDYSMHIESLL 108
>gi|119713527|gb|ABL97580.1| ribosome-binding factor A [uncultured marine bacterium EB0_35D03]
Length = 112
Score = 42.4 bits (98), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 62/113 (54%), Gaps = 7/113 (6%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
+ S RA RV E +R L+ ++L+ E +D + + I++V +S DL A V+ S+ D
Sbjct: 4 QTSYRAERVNELIRRELV-LLLSKETKDPRLQE--VVITDVKVSRDLTSAKVFFSV--DA 58
Query: 67 SPDRVISAL-NCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
S + ++ L N F R + + L +LR+ P L F YDT+ + +++ L+
Sbjct: 59 SAQKTVTTLLNKASGFFRSSLSKVL-DLRHTPALIFIYDTAPNTGARMDDLLS 110
>gi|255284462|ref|ZP_05349017.1| ribosome-binding factor A [Bryantella formatexigens DSM 14469]
gi|255265007|gb|EET58212.1| ribosome-binding factor A [Bryantella formatexigens DSM 14469]
Length = 130
Score = 42.4 bits (98), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 59/112 (52%), Gaps = 4/112 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
KNS + RV EV+ L +I +E +D I + S+ V ++ DL+ YIS+ D
Sbjct: 3 KNSIKNTRVNSEVQRELAGII-RSEIKDPRI-HPLTSVVLVEVAPDLKTCKAYISVLGDE 60
Query: 67 SPDR-VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ + L + FIR ++ +L NLR PE+RF D S++ +++ L+
Sbjct: 61 QAQQSTLEGLRSAVGFIRRQLAHNL-NLRNTPEIRFILDQSIEYGVRMSKLI 111
>gi|305665853|ref|YP_003862140.1| putative ribosome-binding factor A [Maribacter sp. HTCC2170]
gi|88710624|gb|EAR02856.1| putative ribosome-binding factor A [Maribacter sp. HTCC2170]
Length = 130
Score = 42.4 bits (98), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 41 VISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIG-RSLRNLRYVPEL 99
+IS+S+V ++ DL +A VYIS+ + ++ + N I+ + R+ LR VPEL
Sbjct: 34 LISVSKVTVTTDLSIAKVYISIFPNKDSKELLEGIQSNQPLIKHELAQRTKHQLRRVPEL 93
Query: 100 RFRYDTSL 107
F D SL
Sbjct: 94 LFFLDDSL 101
>gi|332653583|ref|ZP_08419328.1| ribosome-binding factor A [Ruminococcaceae bacterium D16]
gi|332518729|gb|EGJ48332.1| ribosome-binding factor A [Ruminococcaceae bacterium D16]
Length = 130
Score = 42.4 bits (98), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 63/115 (54%), Gaps = 6/115 (5%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
S R R+ EE++ L +I +D ++ +IS++ V + DL+ A V+IS+ LD S
Sbjct: 3 SNRIGRINEEIQRELSSLIPT--VKDPRVT-GMISVTAVETTPDLKYAKVHISV-LDKSN 58
Query: 69 D-RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
+ +V+ L ++R +GR+L NLR P+L F D S+ + +++ P +
Sbjct: 59 EAQVLKGLKSAGGYLRRELGRTL-NLRNTPQLSFVPDDSIDKGAHILSMLRDPNV 112
>gi|295094746|emb|CBK83837.1| ribosome-binding factor A [Coprococcus sp. ART55/1]
Length = 137
Score = 42.4 bits (98), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 55/103 (53%), Gaps = 4/103 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
KNS + R+ EV+ L +I + E +D IS + S+ +V ++ DL+ YIS+ D
Sbjct: 3 KNSVKNNRINGEVQRELSRII-SREIKDPRISP-MTSVVDVVVTPDLKFCKAYISVLGDQ 60
Query: 67 SP-DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
D + LN + +IR + S+ NLR PE+ F D S++
Sbjct: 61 DAVDSTFAGLNSAMGYIRRELAHSV-NLRNTPEITFIMDQSIE 102
>gi|289207911|ref|YP_003459977.1| ribosome-binding factor A [Thioalkalivibrio sp. K90mix]
gi|288943542|gb|ADC71241.1| ribosome-binding factor A [Thioalkalivibrio sp. K90mix]
Length = 147
Score = 42.4 bits (98), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 63/116 (54%), Gaps = 13/116 (11%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRD----VISISEVCMSVDLRVATVYIS- 61
++ R+ RVG++++ L +I RL +D +I++++V +S DL A V+ +
Sbjct: 5 RDFHRSDRVGDQIQRELAELI-------RLEVKDPRVGMITLADVEVSRDLAHAKVFFTQ 57
Query: 62 LPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
L + LN F+R +G+ +R LR VP+LRF YD + + ++++L+
Sbjct: 58 LGGEEKGREAQQGLNHAAGFLRRALGQRMR-LRSVPQLRFVYDDTPERGARMSSLI 112
>gi|68171593|ref|ZP_00544965.1| Ribosome-binding factor A [Ehrlichia chaffeensis str. Sapulpa]
gi|88658124|ref|YP_507376.1| ribosome-binding factor A [Ehrlichia chaffeensis str. Arkansas]
gi|67998988|gb|EAM85667.1| Ribosome-binding factor A [Ehrlichia chaffeensis str. Sapulpa]
gi|88599581|gb|ABD45050.1| ribosome-binding factor A [Ehrlichia chaffeensis str. Arkansas]
Length = 114
Score = 42.4 bits (98), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 60/110 (54%), Gaps = 6/110 (5%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS- 67
S R L+V + A+ V++ QD + I+IS+V +S D+R ATV++ + + S
Sbjct: 7 SFRNLKVASVLNRAISRVLM----QDICLFNSHITISKVEVSSDIRDATVFVIISQECSD 62
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ +I LN + FIR I S +LRY+P L F+ D + ++N ++
Sbjct: 63 KEALIKELNDSSYFIRKAIF-SYVDLRYIPRLYFKLDYCFDNLVRVNQIL 111
>gi|256819620|ref|YP_003140899.1| ribosome-binding factor A [Capnocytophaga ochracea DSM 7271]
gi|315224986|ref|ZP_07866805.1| ribosome-binding factor A [Capnocytophaga ochracea F0287]
gi|256581203|gb|ACU92338.1| ribosome-binding factor A [Capnocytophaga ochracea DSM 7271]
gi|314945099|gb|EFS97129.1| ribosome-binding factor A [Capnocytophaga ochracea F0287]
Length = 130
Score = 42.4 bits (98), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 41 VISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGR-SLRNLRYVPEL 99
+IS+++V ++VDL VA VY+S+ + V+ + N I+ + + + R +PEL
Sbjct: 34 LISVTKVNVTVDLSVAKVYLSVFPEAKAAEVLKGVTSNAPLIKHELSQITKHQFRRMPEL 93
Query: 100 RFRYDTSLQ 108
F D SLQ
Sbjct: 94 YFYIDDSLQ 102
>gi|260424716|ref|ZP_05778979.1| ribosome-binding factor A [Dialister invisus DSM 15470]
gi|260402930|gb|EEW96477.1| ribosome-binding factor A [Dialister invisus DSM 15470]
Length = 119
Score = 42.4 bits (98), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 42 ISISEVCMSVDLRVATVYISL-PLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELR 100
++++ V ++ DLR ATVY+SL + + LN + FIR +G L+ + Y PE+
Sbjct: 33 VTVTGVKLTGDLREATVYVSLFGQEEERKESLMVLNKSKGFIRKELGTRLK-VYYTPEIS 91
Query: 101 FRYDTSLQSYWKLNALM 117
F D SL + L+
Sbjct: 92 FEEDKSLDYGMHIEGLL 108
>gi|323342025|ref|ZP_08082258.1| ribosome-binding factor A [Erysipelothrix rhusiopathiae ATCC 19414]
gi|322464450|gb|EFY09643.1| ribosome-binding factor A [Erysipelothrix rhusiopathiae ATCC 19414]
Length = 111
Score = 42.4 bits (98), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 42 ISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRF 101
+SI+EV ++ D AT+Y+S D + ALN +R + ++L ++R PEL F
Sbjct: 32 VSITEVDVTNDFSFATIYVSFLEDSKKQPGMDALNKAKGMLRSEVSKAL-SIRRTPELIF 90
Query: 102 RYDTSLQSYWKLNALM 117
+ D S + K++ ++
Sbjct: 91 KLDESSEYGAKIDGIL 106
>gi|331701350|ref|YP_004398309.1| ribosome-binding factor A [Lactobacillus buchneri NRRL B-30929]
gi|329128693|gb|AEB73246.1| Ribosome-binding factor A [Lactobacillus buchneri NRRL B-30929]
Length = 117
Score = 42.0 bits (97), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 3/78 (3%)
Query: 42 ISISEVCMSVDLRVATVYISLPLDVSPDRVISA--LNCNIKFIRGRIGRSLRNLRYVPEL 99
++++ V ++ DL+ AT+Y S+ D D +A L IRG +G L ++ PE+
Sbjct: 33 VTLTGVEVTGDLQQATIYYSILSDKKEDEETTAKGLEKASGLIRGELGHRL-SIYKTPEI 91
Query: 100 RFRYDTSLQSYWKLNALM 117
+F DTS+Q K++ L+
Sbjct: 92 KFELDTSVQYGDKIDRLI 109
>gi|157412469|ref|YP_001483335.1| ribosome-binding factor A [Prochlorococcus marinus str. MIT 9215]
gi|166918677|sp|A8G2B8|RBFA_PROM2 RecName: Full=Ribosome-binding factor A
gi|157387044|gb|ABV49749.1| Ribosome-binding factor A [Prochlorococcus marinus str. MIT 9215]
Length = 130
Score = 42.0 bits (97), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 24 MWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI-SLPLDVSPDRVISALNCNIKFI 82
+ +IL NE + LIS ++IS++ +S DL+ +YI S + ++S LN I
Sbjct: 18 ITLILQNELEIDLISDHFVNISKIDLSGDLQHCKIYITSTAQEKVKKEIVSNLNTAKSSI 77
Query: 83 RGRIGRSLRNLRYVPELRFRYDTSL 107
R +G+ + +R VPE+ F+ D L
Sbjct: 78 RHSLGKRIE-MRRVPEIIFKDDVVL 101
>gi|85860519|ref|YP_462721.1| ribosome-binding factor A [Syntrophus aciditrophicus SB]
gi|123517498|sp|Q2LWT9|RBFA_SYNAS RecName: Full=Ribosome-binding factor A
gi|85723610|gb|ABC78553.1| ribosome-binding factor A [Syntrophus aciditrophicus SB]
Length = 123
Score = 42.0 bits (97), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 60/109 (55%), Gaps = 5/109 (4%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVY-ISLPLDVSP 68
+RA RV + V+ + ++L +D +SR ++++ V +S DLR A ++ + + D
Sbjct: 5 KRADRVADLVKMEIADILLRR-IRDPRVSR--LTVTGVKVSDDLRTARIFFVEMGEDSCH 61
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ L FIR +G+ L+ LRYVP+L F+ D+S +++ L+
Sbjct: 62 PETLEGLQKAGGFIRKELGKRLK-LRYVPDLIFKPDSSFAYGSRIDQLI 109
>gi|72383316|ref|YP_292671.1| ribosome-binding factor A [Prochlorococcus marinus str. NATL2A]
gi|123620526|sp|Q46HR0|RBFA_PROMT RecName: Full=Ribosome-binding factor A
gi|72003166|gb|AAZ58968.1| ribosome-binding factor A [Prochlorococcus marinus str. NATL2A]
Length = 123
Score = 42.0 bits (97), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 55/101 (54%), Gaps = 3/101 (2%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDV 66
NSRR ++ ++ + +++N +D I + +I+I+ V +S DL+ A ++ISL +
Sbjct: 3 NSRRVEKLAALLKREVSELLVNG-IRDERIHQAMITITSVEVSGDLQHAKIFISLFGEEK 61
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSL 107
D V+ L FIR + + L+ +R PEL F+ D +
Sbjct: 62 KKDEVLVGLEEAKGFIRAELAQRLQ-MRRSPELVFKIDKGM 101
>gi|270158097|ref|ZP_06186754.1| ribosome-binding factor A [Legionella longbeachae D-4968]
gi|269990122|gb|EEZ96376.1| ribosome-binding factor A [Legionella longbeachae D-4968]
Length = 108
Score = 42.0 bits (97), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 45/76 (59%), Gaps = 2/76 (2%)
Query: 42 ISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRF 101
++IS V ++ DL A VY ++ L+ + V S LN ++R + RS+ LR VP+L F
Sbjct: 23 VTISAVKVAADLGHAKVYFTV-LNDDREMVASILNAASSYLRSVLARSI-TLRTVPQLHF 80
Query: 102 RYDTSLQSYWKLNALM 117
YD S++ +L+ L+
Sbjct: 81 VYDESIEYGQRLSRLI 96
>gi|119898397|ref|YP_933610.1| ribosome-binding factor A [Azoarcus sp. BH72]
gi|166218420|sp|A1K7B8|RBFA_AZOSB RecName: Full=Ribosome-binding factor A
gi|119670810|emb|CAL94723.1| RbfA protein [Azoarcus sp. BH72]
Length = 126
Score = 42.0 bits (97), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 59/113 (52%), Gaps = 5/113 (4%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI-SLPL 64
PK R+ RV E++R L +I E +D + I++++V +S D A V+ S+
Sbjct: 2 PKEYSRSQRVVEQIRRELAELI-RLEVKDPRVG--FITLTDVEISPDYAHAKVFFTSMTG 58
Query: 65 DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ S ++ L F+R +GR +R + PEL F YD S++ +L+ L+
Sbjct: 59 EESVPEILQGLRRASGFLRRELGRRVR-IHTTPELHFHYDRSVEEGSRLSRLI 110
>gi|300173101|ref|YP_003772267.1| ribosome-binding factor A [Leuconostoc gasicomitatum LMG 18811]
gi|299887480|emb|CBL91448.1| ribosome-binding factor A [Leuconostoc gasicomitatum LMG 18811]
Length = 117
Score = 42.0 bits (97), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 56/107 (52%), Gaps = 14/107 (13%)
Query: 8 NSRRALRVGEEVR----SALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP 63
N +RA R+ +EV+ S L+ I + QD ++++ V +S DL++AT+Y S+
Sbjct: 3 NPQRAGRLAQEVQRDVTSLLLKRINDPRVQD-------VTVTSVELSGDLQIATIYYSIL 55
Query: 64 LDVSPD--RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
D++ D + + L IR +G L + PEL+F D S+Q
Sbjct: 56 SDLASDGKKAQAGLEAASGLIRKELGSRL-TVYKTPELKFVRDQSVQ 101
>gi|227872006|ref|ZP_03990391.1| ribosome-binding factor A [Oribacterium sinus F0268]
gi|227842149|gb|EEJ52394.1| ribosome-binding factor A [Oribacterium sinus F0268]
Length = 138
Score = 42.0 bits (97), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 61/118 (51%), Gaps = 8/118 (6%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
MK + KN RR E+VR L +I E +D +S ++ V ++ DL+ V++
Sbjct: 1 MKKLSFKNQRR----NEDVRRCLSLLI-REEVKDSRVS-PFCDVTGVDLTPDLQYCKVFV 54
Query: 61 S-LPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
S L + + I L F+R + SL NLR+ PEL+F D S++ +++AL+
Sbjct: 55 SCLGSEEELGKTIEGLKAAGGFLRRELAGSL-NLRHTPELQFIADHSVEYGSRMDALI 111
>gi|326692684|ref|ZP_08229689.1| ribosome-binding factor A [Leuconostoc argentinum KCTC 3773]
Length = 117
Score = 42.0 bits (97), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 57/103 (55%), Gaps = 6/103 (5%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS 67
N +RA R+ +E++ + ++L R+ +DV +++ V +S DL++AT+Y S+ D++
Sbjct: 3 NPQRAGRLAQEIQRDVTDLLLKRINDPRV--KDV-TVTSVELSGDLQIATIYYSILSDLA 59
Query: 68 PD--RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
D + + L IR +G L + PELRF D S+Q
Sbjct: 60 SDGQKAQAGLEAASGLIRKELGARL-TVYKTPELRFVRDQSVQ 101
>gi|295110272|emb|CBL24225.1| ribosome-binding factor A [Ruminococcus obeum A2-162]
Length = 127
Score = 42.0 bits (97), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 58/112 (51%), Gaps = 4/112 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLD 65
KNS + R+ EV+ L +I E +D I + S+ V ++ DL+ YIS L
Sbjct: 3 KNSIKNTRINGEVQKELSSII-RGEIKDPRI-HPMTSVMAVEVAPDLKTCRAYISVLGNQ 60
Query: 66 VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ + I LN +IR ++ R+L NLR PE+RF D S++ ++ L+
Sbjct: 61 EAKEATIRGLNSAEGYIRRQLARNL-NLRNTPEIRFILDESIEYGVNMSKLI 111
>gi|120437657|ref|YP_863343.1| ribosome-binding factor A [Gramella forsetii KT0803]
gi|171460864|sp|A0M6N1|RBFA_GRAFK RecName: Full=Ribosome-binding factor A
gi|117579807|emb|CAL68276.1| ribosome-binding factor A [Gramella forsetii KT0803]
Length = 131
Score = 42.0 bits (97), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 52/100 (52%), Gaps = 1/100 (1%)
Query: 27 ILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRI 86
IL N ++ + +IS+S+V ++ DL +A Y+S+ + VI +N N I+ +
Sbjct: 21 ILQNSLRESGRTGILISVSKVRVTTDLSIAKAYVSIFPSKHQEEVIKEINENKSQIKHEM 80
Query: 87 GRSLRN-LRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
+ R+ LR +P+L F D SL+ + + + PVA
Sbjct: 81 AQRTRHQLRKMPDLSFYVDDSLEYIDGIEKSIKGKEDPVA 120
>gi|71901437|ref|ZP_00683527.1| Ribosome-binding factor A [Xylella fastidiosa Ann-1]
gi|71728808|gb|EAO30949.1| Ribosome-binding factor A [Xylella fastidiosa Ann-1]
Length = 125
Score = 42.0 bits (97), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 42 ISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRF 101
+S+S+V ++ D+ A V+++ ++ L + +R ++ +++R LR+VPEL F
Sbjct: 36 MSVSDVEVTRDMAHAKVFVTALQAERSFEAVAGLKALARELRMQLAQTMR-LRFVPELHF 94
Query: 102 RYDTSLQSYWKLNALM 117
YD SL ++N L+
Sbjct: 95 HYDDSLDRGERINTLL 110
>gi|290969151|ref|ZP_06560676.1| ribosome-binding factor A [Megasphaera genomosp. type_1 str. 28L]
gi|290780657|gb|EFD93260.1| ribosome-binding factor A [Megasphaera genomosp. type_1 str. 28L]
Length = 115
Score = 42.0 bits (97), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Query: 42 ISISEVCMSVDLRVATVYISLPLDVSPDR-VISALNCNIKFIRGRIGRSLRNLRYVPELR 100
+++++ ++ DLR ATVY+SL R + L + + R +G+ L +RY P +
Sbjct: 33 VTVTDAKITGDLREATVYVSLYGSPEEKRATLQVLRQSAGYFRTAVGKRL-GIRYAPSIT 91
Query: 101 FRYDTSLQSYWKLNALM 117
F DTSL K++ L+
Sbjct: 92 FAEDTSLDYGMKIDRLL 108
>gi|78778501|ref|YP_396613.1| ribosome-binding factor A [Prochlorococcus marinus str. MIT 9312]
gi|123554790|sp|Q31D68|RBFA_PROM9 RecName: Full=Ribosome-binding factor A
gi|78712000|gb|ABB49177.1| ribosome-binding factor A [Prochlorococcus marinus str. MIT 9312]
Length = 130
Score = 42.0 bits (97), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Query: 24 MWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI-SLPLDVSPDRVISALNCNIKFI 82
+ +IL N+ ++ LI ++IS++ +S DL+ +YI S + +++ LN FI
Sbjct: 18 ITLILQNDLENDLIRDYFVNISKIDLSGDLQHCKIYITSTAKETVRKEIVANLNTAKSFI 77
Query: 83 RGRIGRSLRNLRYVPELRFRYDTSL 107
R +G+ + +R VPE+ F+ D L
Sbjct: 78 RNNLGKRIE-MRRVPEIIFKEDIVL 101
>gi|301063527|ref|ZP_07204059.1| ribosome-binding factor A [delta proteobacterium NaphS2]
gi|300442466|gb|EFK06699.1| ribosome-binding factor A [delta proteobacterium NaphS2]
Length = 116
Score = 42.0 bits (97), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 59/104 (56%), Gaps = 9/104 (8%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
+R+ RVG+ + + ++L R+ ++++ + +S DL++A +Y S+ D +
Sbjct: 4 GKRSARVGDVILKEVALLLLEKVRDPRVQG---VTLTGIRLSDDLKLARIYYSVMGDET- 59
Query: 69 DRVI---SALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQS 109
R++ S L+ F++ IGR +LRY+P++ F YD SL++
Sbjct: 60 -RILKAQSGLDSAKGFVKREIGRRA-SLRYIPDITFVYDPSLET 101
>gi|332295454|ref|YP_004437377.1| Ribosome-binding factor A [Thermodesulfobium narugense DSM 14796]
gi|332178557|gb|AEE14246.1| Ribosome-binding factor A [Thermodesulfobium narugense DSM 14796]
Length = 112
Score = 42.0 bits (97), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 55/101 (54%), Gaps = 5/101 (4%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV-S 67
S +A R+ E +R L +L E +D I + ++SI E+ MS D + V++S+ D S
Sbjct: 2 SVKAERLKETIRKEL--AVLLYELKDVRI-KSMVSIMELDMSSDHKNIKVWVSIYGDEKS 58
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
+ + L +F+RG + R + L+Y P++ F D SL+
Sbjct: 59 KEETMKGLVSASRFLRGELARRI-GLKYAPQILFAIDNSLE 98
>gi|56379642|dbj|BAD75550.1| ribosome-binding factor A [Geobacillus kaustophilus HTA426]
Length = 112
Score = 42.0 bits (97), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 42 ISISEVCMSVDLRVATVYIS-LPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELR 100
+++++V ++ DL+ A VYIS L D + + AL FIR IG+ +R LR PE+
Sbjct: 17 VTVTDVRVTGDLQQAKVYISVLGDDKQRENTLKALEKAKGFIRSEIGQRIR-LRKTPEIF 75
Query: 101 FRYDTSLQSYWKLNALM 117
F D +++ ++ L+
Sbjct: 76 FEIDETMEYGSRIEQLI 92
>gi|29427588|sp|P59411|RBFA_BUCBP RecName: Full=Ribosome-binding factor A
Length = 119
Score = 42.0 bits (97), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 58/109 (53%), Gaps = 4/109 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL--PLDVSP 68
R+ ++ E++ + W+I RL + +IS+S V +S D A +Y+S+ ++S
Sbjct: 6 RSFKISNEIKKKISWIICYQLCDPRLFN-ILISVSSVNLSRDFSYAKIYVSILNNKNISF 64
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+++ L + K IR + + + LR +P L F +D+S + K+ L+
Sbjct: 65 KEILTILQNSSKHIRYLLAKGIF-LRIIPTLHFCHDSSYVNGTKITNLI 112
>gi|24418643|sp|Q8P7U8|RBFA_XANCP RecName: Full=Ribosome-binding factor A
gi|172046801|sp|Q4UWA1|RBFA_XANC8 RecName: Full=Ribosome-binding factor A
gi|189039669|sp|B0RRB5|RBFA_XANCB RecName: Full=Ribosome-binding factor A
Length = 130
Score = 42.0 bits (97), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 57/111 (51%), Gaps = 4/111 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
K+ R RV +VR L I++ +D + +S+S+V +S DL A V+++
Sbjct: 4 KSFHRTDRVSAQVRRDL-GTIVHAAVRDHGLPS--VSVSDVEISRDLAHAKVFVTALQQE 60
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ L +R ++ R+++ LR+VPEL F YD S+ +++ L+
Sbjct: 61 RSAEAVKGLKEIAGQLRTQLARAMK-LRHVPELHFHYDDSVDRGERIDNLL 110
>gi|194366587|ref|YP_002029197.1| ribosome-binding factor A [Stenotrophomonas maltophilia R551-3]
gi|259552073|sp|B4SQR9|RBFA_STRM5 RecName: Full=Ribosome-binding factor A
gi|194349391|gb|ACF52514.1| ribosome-binding factor A [Stenotrophomonas maltophilia R551-3]
Length = 127
Score = 42.0 bits (97), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 62/124 (50%), Gaps = 6/124 (4%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
PK R RV ++R L ++ N + L S +S+S+V ++ D+ A V+++ +
Sbjct: 2 PKTFHRTDRVSAQLRRELGTLVHNAVREHGLPS---VSVSDVEITRDMAHAKVFVTALMP 58
Query: 66 VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKL-NALMCLPKIPV 124
++ L +R + R+++ LR+VPEL F YD S+ + N L LP +
Sbjct: 59 ERSAEAVAGLKELGYRLRMDLARAMK-LRHVPELHFHYDDSVDRGEHIDNILRDLPDT-L 116
Query: 125 ALEK 128
A EK
Sbjct: 117 AAEK 120
>gi|330888657|gb|EGH21318.1| ribosome-binding factor A [Pseudomonas syringae pv. mori str.
301020]
Length = 131
Score = 41.6 bits (96), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 59/107 (55%), Gaps = 7/107 (6%)
Query: 14 RVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRV-- 71
R+G++++ L +I E +D + +++I V +S D+ A +++++ S + +
Sbjct: 3 RIGDQMQRELAQLI-RREIKDPRVG--LVTIPAVDVSRDVGHAKIFMTVMGQDSAEEIAQ 59
Query: 72 -ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
I LN F+R ++ R ++ LR VP+L F YD S+ L+AL+
Sbjct: 60 TIKVLNSAAGFLRMQLAREMK-LRSVPQLHFHYDESVVRGAHLSALI 105
>gi|21231943|ref|NP_637860.1| ribosome-binding factor A [Xanthomonas campestris pv. campestris
str. ATCC 33913]
gi|66767930|ref|YP_242692.1| ribosome-binding factor A [Xanthomonas campestris pv. campestris
str. 8004]
gi|188991046|ref|YP_001903056.1| ribosome-binding factor A [Xanthomonas campestris pv. campestris
str. B100]
gi|21113672|gb|AAM41784.1| ribosomal-binding factor A [Xanthomonas campestris pv. campestris
str. ATCC 33913]
gi|66573262|gb|AAY48672.1| ribosomal-binding factor A [Xanthomonas campestris pv. campestris
str. 8004]
gi|167732806|emb|CAP51000.1| ribosomal-binding factor A [Xanthomonas campestris pv. campestris]
Length = 132
Score = 41.6 bits (96), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 57/111 (51%), Gaps = 4/111 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
K+ R RV +VR L I++ +D + +S+S+V +S DL A V+++
Sbjct: 6 KSFHRTDRVSAQVRRDL-GTIVHAAVRDHGLPS--VSVSDVEISRDLAHAKVFVTALQQE 62
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ L +R ++ R+++ LR+VPEL F YD S+ +++ L+
Sbjct: 63 RSAEAVKGLKEIAGQLRTQLARAMK-LRHVPELHFHYDDSVDRGERIDNLL 112
>gi|330718228|ref|ZP_08312828.1| ribosome-binding factor A [Leuconostoc fallax KCTC 3537]
Length = 117
Score = 41.6 bits (96), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 57/103 (55%), Gaps = 6/103 (5%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS 67
N +RA R+ +E++ + ++L R+ +DV +I+ V ++ DL+ AT+Y S+ D++
Sbjct: 3 NPQRAGRLSQEIQRDVTDLLLKRVRDPRV--QDV-TITSVDVTGDLQGATIYYSILSDLA 59
Query: 68 PD--RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
D + L IR +G L + +PEL+F DTS+Q
Sbjct: 60 SDAKKAQDGLEAATGLIRKELGSRL-TVYKIPELKFVRDTSVQ 101
>gi|227510257|ref|ZP_03940306.1| ribosome-binding factor A [Lactobacillus brevis subsp. gravesensis
ATCC 27305]
gi|227524401|ref|ZP_03954450.1| ribosome-binding factor A [Lactobacillus hilgardii ATCC 8290]
gi|227088632|gb|EEI23944.1| ribosome-binding factor A [Lactobacillus hilgardii ATCC 8290]
gi|227189909|gb|EEI69976.1| ribosome-binding factor A [Lactobacillus brevis subsp. gravesensis
ATCC 27305]
Length = 116
Score = 41.6 bits (96), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 3/78 (3%)
Query: 42 ISISEVCMSVDLRVATVYISLPLDVSPDRVISA--LNCNIKFIRGRIGRSLRNLRYVPEL 99
++++ V ++ DL+ AT+Y S+ D D +A L IRG +G L ++ PE+
Sbjct: 33 VTLTGVEVTGDLQQATIYYSILSDDKADEETTAKGLEKATGLIRGELGSRL-SIYKTPEI 91
Query: 100 RFRYDTSLQSYWKLNALM 117
+F DTS+Q K++ L+
Sbjct: 92 KFELDTSVQYGDKIDRLI 109
>gi|86135202|ref|ZP_01053784.1| Ribosome-binding factor A [Polaribacter sp. MED152]
gi|85822065|gb|EAQ43212.1| Ribosome-binding factor A [Polaribacter sp. MED152]
Length = 131
Score = 41.6 bits (96), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 41 VISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRN-LRYVPEL 99
+IS+S+V ++ DL VA VY+S+ D ++ + N IR + + +N LR +PEL
Sbjct: 34 IISVSKVHVTSDLGVAKVYLSVFPSEKRDELVKGVQSNTVLIRHEMAKRTKNQLRRMPEL 93
Query: 100 RFRYDTSL 107
F D +L
Sbjct: 94 LFFGDDTL 101
>gi|297180706|gb|ADI16915.1| ribosome-binding factor a [uncultured gamma proteobacterium
HF0010_16J05]
Length = 124
Score = 41.6 bits (96), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 56/112 (50%), Gaps = 8/112 (7%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV---- 66
R LRV + +R + IL ++ +D + +S+S+V +S DL A +Y+S LD
Sbjct: 3 RDLRVADFIRDEIAR-ILQSQMRDPRVGA-FVSVSDVRVSKDLSYAEIYVS-SLDAKTAE 59
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+++ LN F R + + +R P+ RF YD L+S +L L+
Sbjct: 60 QKQQLLEVLNSAAGFFRSELAKR-HKMRTTPKPRFHYDELLESGPRLEKLIS 110
>gi|148284848|ref|YP_001248938.1| ribosome-binding factor A [Orientia tsutsugamushi str. Boryong]
gi|146740287|emb|CAM80662.1| Ribosome-binding factor A [Orientia tsutsugamushi str. Boryong]
Length = 120
Score = 41.6 bits (96), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 54/107 (50%), Gaps = 6/107 (5%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
MK S + LR +R AL+ V+ +N+ L I++++V + YI
Sbjct: 1 MKKIYQAKSYKTLRTANMIRLALIDVLHSNKLHTDLFECK-ITVTKVLAQAGQGMYHCYI 59
Query: 61 SLPLD---VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYD 104
LP +S D+++ A+N ++ IR I + + NL+Y PELR YD
Sbjct: 60 -LPFSNSKLSQDKLMHAINDSLPIIRRMITQKI-NLKYSPELRIFYD 104
>gi|158320561|ref|YP_001513068.1| ribosome-binding factor A [Alkaliphilus oremlandii OhILAs]
gi|166918672|sp|A8MFA9|RBFA_ALKOO RecName: Full=Ribosome-binding factor A
gi|158140760|gb|ABW19072.1| ribosome-binding factor A [Alkaliphilus oremlandii OhILAs]
Length = 132
Score = 41.6 bits (96), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 52/99 (52%), Gaps = 4/99 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
R R+ EE++ + I NE +D IS + SI EV ++ DLR +Y+S L +
Sbjct: 5 RVKRLSEEIKKIVSDSI-RNELRDPRISS-MTSIVEVDVTRDLRYVNIYVSVLGNEKEKA 62
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
+ L FIR IG+ ++ RY PE+ F+ D S++
Sbjct: 63 DTMEGLTKASGFIRREIGKKIK-ARYTPEVIFKLDESIE 100
>gi|302039402|ref|YP_003799724.1| ribosome-binding factor A [Candidatus Nitrospira defluvii]
gi|300607466|emb|CBK43799.1| Ribosome-binding factor A [Candidatus Nitrospira defluvii]
Length = 132
Score = 41.6 bits (96), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 53/97 (54%), Gaps = 5/97 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
RA RV +++R + +++ R+ S +++++V ++ DLR+A V+++ +R
Sbjct: 8 RADRVADQIRMEVADILMRKIKDPRVRS---VTVTDVELTKDLRIARVFVTTMEQNKDER 64
Query: 71 -VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTS 106
V L F+R +GR L LRY+PEL F D S
Sbjct: 65 LVFDGLAKASGFVRAELGRRL-ALRYLPELIFMKDIS 100
>gi|242278475|ref|YP_002990604.1| ribosome-binding factor A [Desulfovibrio salexigens DSM 2638]
gi|242121369|gb|ACS79065.1| ribosome-binding factor A [Desulfovibrio salexigens DSM 2638]
Length = 117
Score = 41.6 bits (96), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 58/102 (56%), Gaps = 5/102 (4%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS 67
SRR++++G+++ + +++ RL +++SIS V M+ D ++A V ++ D
Sbjct: 5 TSRRSVKMGDQIMREIATMLIEEIGDPRL---EMVSISGVRMNKDNKIAEVMFTMAGDKE 61
Query: 68 P-DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
+ AL+ ++R ++ + +R +R +PELRF +D L+
Sbjct: 62 KIAAAVKALDKAKGYMRSKLSKRIR-VRQIPELRFVHDNFLE 102
>gi|167766531|ref|ZP_02438584.1| hypothetical protein CLOSS21_01037 [Clostridium sp. SS2/1]
gi|317498931|ref|ZP_07957214.1| ribosome-binding factor A [Lachnospiraceae bacterium 5_1_63FAA]
gi|167711654|gb|EDS22233.1| hypothetical protein CLOSS21_01037 [Clostridium sp. SS2/1]
gi|291558570|emb|CBL37370.1| ribosome-binding factor A [butyrate-producing bacterium SSC/2]
gi|316893764|gb|EFV15963.1| ribosome-binding factor A [Lachnospiraceae bacterium 5_1_63FAA]
Length = 123
Score = 41.6 bits (96), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 54/103 (52%), Gaps = 4/103 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLD 65
KNS + R+ EV+ L +I + E +D I+ + S+ + ++ DL+ YIS L D
Sbjct: 3 KNSIKNTRINGEVQRELSRII-SREIKDPRIA-PMTSVVDAVVTSDLKQCKAYISVLGND 60
Query: 66 VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
+ + LN + +IR + S+ NLR PE+ F D S++
Sbjct: 61 EEKEETMKGLNSAVGYIRRELAHSI-NLRNTPEITFILDDSIE 102
>gi|116748670|ref|YP_845357.1| ribosome-binding factor A [Syntrophobacter fumaroxidans MPOB]
gi|171460794|sp|A0LHM0|RBFA_SYNFM RecName: Full=Ribosome-binding factor A
gi|116697734|gb|ABK16922.1| ribosome-binding factor A [Syntrophobacter fumaroxidans MPOB]
Length = 117
Score = 41.6 bits (96), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 62/111 (55%), Gaps = 7/111 (6%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPD 69
+RA RV + +R + ++L +D +S+ ++I+ + ++ DL+ A V+ L + +
Sbjct: 4 KRADRVADLLRREMADLLLRR-IKDPRVSK--VTITAIEVTDDLQNAKVFFCLMGAATEE 60
Query: 70 RVISA---LNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
SA LN F+R +G+ L +LRY+P+L F YD+S + K+ L+
Sbjct: 61 EKRSAALGLNRGKGFMRLELGKRL-HLRYLPQLSFHYDSSFEYGDKIERLL 110
>gi|323701867|ref|ZP_08113537.1| ribosome-binding factor A [Desulfotomaculum nigrificans DSM 574]
gi|323533171|gb|EGB23040.1| ribosome-binding factor A [Desulfotomaculum nigrificans DSM 574]
Length = 120
Score = 41.6 bits (96), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 58/110 (52%), Gaps = 5/110 (4%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVS 67
S R R+ E ++ + +I E +D + ++I+ V ++ DL A +++S + D
Sbjct: 2 SHRPERLAEAIKKEIADLI-RTEIKDPRVG--FVTITGVEVTRDLSYAKIFVSVMGSDDQ 58
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
++ L ++R +GR ++ +R+VPEL F+ DTSL ++ L+
Sbjct: 59 RKETMAVLQKAAGYMRSEVGRRIK-VRHVPELMFKLDTSLDHGTRIMELL 107
>gi|15836841|ref|NP_297529.1| ribosome-binding factor A [Xylella fastidiosa 9a5c]
gi|20978662|sp|Q9PGR2|RBFA_XYLFA RecName: Full=Ribosome-binding factor A
gi|9105047|gb|AAF83049.1|AE003877_4 ribosomal-binding factor A [Xylella fastidiosa 9a5c]
Length = 125
Score = 41.6 bits (96), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 42 ISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRF 101
+S+S+V ++ D+ A V+++ ++ L + +R ++ ++R LR+VPEL F
Sbjct: 36 MSVSDVEVTRDMAHAKVFVTALQAERSFEAVAGLKALARELRMQLAHTMR-LRFVPELHF 94
Query: 102 RYDTSLQSYWKLNALM 117
YD SL ++N L+
Sbjct: 95 HYDDSLDRGERINTLL 110
>gi|255658257|ref|ZP_05403666.1| ribosome-binding factor A [Mitsuokella multacida DSM 20544]
gi|260849568|gb|EEX69575.1| ribosome-binding factor A [Mitsuokella multacida DSM 20544]
Length = 131
Score = 41.6 bits (96), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 58/111 (52%), Gaps = 11/111 (9%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
R +V E ++ + +IL E +D I ++++ V + DLR A +Y+SL + ++
Sbjct: 5 RVEKVQELMKQEISEIILR-ELKDPRIG--FVTVTSVECTGDLREAKIYVSL---MGSEQ 58
Query: 71 VI----SALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ + L ++ FIR IG+ +R LR+ PEL F D SL + L+
Sbjct: 59 QVKDCWAGLQSSLGFIRREIGKRIR-LRFTPELSFVVDKSLDYSAHIQELL 108
>gi|27904829|ref|NP_777955.1| ribosome-binding factor A [Buchnera aphidicola str. Bp (Baizongia
pistaciae)]
gi|27904227|gb|AAO27060.1| ribosome-binding factor A [Buchnera aphidicola str. Bp (Baizongia
pistaciae)]
Length = 124
Score = 41.6 bits (96), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 58/109 (53%), Gaps = 4/109 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL--PLDVSP 68
R+ ++ E++ + W+I RL + +IS+S V +S D A +Y+S+ ++S
Sbjct: 11 RSFKISNEIKKKISWIICYQLCDPRLFN-ILISVSSVNLSRDFSYAKIYVSILNNKNISF 69
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+++ L + K IR + + + LR +P L F +D+S + K+ L+
Sbjct: 70 KEILTILQNSSKHIRYLLAKGIF-LRIIPTLHFCHDSSYVNGTKITNLI 117
>gi|78048392|ref|YP_364567.1| ribosome-binding factor A [Xanthomonas campestris pv. vesicatoria
str. 85-10]
gi|294624707|ref|ZP_06703374.1| ribosome-binding factor A [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 11122]
gi|294665174|ref|ZP_06730474.1| ribosome-binding factor A [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 10535]
gi|325924692|ref|ZP_08186130.1| ribosome-binding factor A [Xanthomonas perforans 91-118]
gi|123584681|sp|Q3BRP6|RBFA_XANC5 RecName: Full=Ribosome-binding factor A
gi|78036822|emb|CAJ24515.1| ribosomal-binding factor A [Xanthomonas campestris pv. vesicatoria
str. 85-10]
gi|292600980|gb|EFF45050.1| ribosome-binding factor A [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 11122]
gi|292605038|gb|EFF48389.1| ribosome-binding factor A [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 10535]
gi|325544898|gb|EGD16243.1| ribosome-binding factor A [Xanthomonas perforans 91-118]
Length = 130
Score = 41.6 bits (96), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 57/111 (51%), Gaps = 4/111 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
K+ R RV +VR L I++ +D + +S+S+V +S DL A V+++
Sbjct: 4 KSFHRTDRVSAQVRRDL-GTIVHAAVRDHGLPS--VSVSDVEISRDLAHAKVFVTALQQE 60
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ L +R ++ R+++ LR+VPEL F YD S+ +++ L+
Sbjct: 61 RSAEAVKGLKEIAGQLRTQLARAMK-LRHVPELHFHYDDSVDRGERIDNLL 110
>gi|190575261|ref|YP_001973106.1| ribosome-binding factor A [Stenotrophomonas maltophilia K279a]
gi|254521412|ref|ZP_05133467.1| ribosome-binding factor A [Stenotrophomonas sp. SKA14]
gi|259552102|sp|B2FN89|RBFA_STRMK RecName: Full=Ribosome-binding factor A
gi|190013183|emb|CAQ46816.1| putative ribosome-binding factor A [Stenotrophomonas maltophilia
K279a]
gi|219719003|gb|EED37528.1| ribosome-binding factor A [Stenotrophomonas sp. SKA14]
Length = 127
Score = 41.6 bits (96), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 62/124 (50%), Gaps = 6/124 (4%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
PK R RV ++R L ++ N + L S +S+S+V ++ D+ A V+++ +
Sbjct: 2 PKTFHRTDRVSAQLRRELGTLVHNAVREHGLPS---VSVSDVEITRDMAHAKVFVTALMP 58
Query: 66 VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKL-NALMCLPKIPV 124
++ L +R + R+++ LR+VPEL F YD S+ + N L LP +
Sbjct: 59 ERSAEAVAGLKELGYRLRMDLARAMK-LRHVPELHFHYDDSVDRGEHIDNILRDLPDT-L 116
Query: 125 ALEK 128
A EK
Sbjct: 117 AAEK 120
>gi|189501698|ref|YP_001957415.1| hypothetical protein Aasi_0243 [Candidatus Amoebophilus asiaticus
5a2]
gi|189497139|gb|ACE05686.1| hypothetical protein Aasi_0243 [Candidatus Amoebophilus asiaticus
5a2]
Length = 125
Score = 41.6 bits (96), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 41 VISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRN-LRYVPEL 99
+++++ + + RV VY+S + R+I L + IRG +G+ L N LR +PEL
Sbjct: 34 LVTVTSLYICDKTRVVKVYVSFMPSQNGPRMIKELEKHKSKIRGLLGKRLANKLRSIPEL 93
Query: 100 RFRYDTSLQSYWKLNALM 117
+F D S++ + + L+
Sbjct: 94 KFHLDNSIERAYHIEKLL 111
>gi|284052769|ref|ZP_06382979.1| ribosome-binding factor A [Arthrospira platensis str. Paraca]
gi|291565861|dbj|BAI88133.1| ribosome-binding factor A [Arthrospira platensis NIES-39]
Length = 137
Score = 41.6 bits (96), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 57/109 (52%), Gaps = 3/109 (2%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPD 69
RR RV ++ + V+L + DR + ++SI+EV +S DL+ A +++S+
Sbjct: 5 RRVSRVASLIKREVSQVLLYDIKDDR-VGTGMVSITEVEVSGDLQHAKIFVSIYGTEEAR 63
Query: 70 R-VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
R + L +IR +G+ +R LR PE+ F D SL+ K+ L+
Sbjct: 64 RSTMEGLRSATGYIRSHLGKHIR-LRRTPEVVFLEDRSLERGDKIIDLL 111
>gi|33866739|ref|NP_898298.1| ribosome-binding factor A [Synechococcus sp. WH 8102]
gi|39931754|sp|Q7TTS8|RBFA_SYNPX RecName: Full=Ribosome-binding factor A
gi|33639340|emb|CAE08722.1| possible Ribosome-binding factor A [Synechococcus sp. WH 8102]
Length = 134
Score = 41.6 bits (96), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 58/111 (52%), Gaps = 3/111 (2%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD-V 66
RR RV +R +++N +D + + ++SI+ V +S DL+ +++S+ D
Sbjct: 3 QGRRVERVAALIRKETSELLING-IRDERVHQGMVSITNVEVSGDLQHCKIFVSIFGDEA 61
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
S +V+ L +++G +GR L+ +R P++ F+ D ++ + L+
Sbjct: 62 SQLQVMEGLQAASGYLKGELGRRLQ-MRRAPDVVFQLDRGIERGTSVLGLL 111
>gi|269792601|ref|YP_003317505.1| ribosome-binding factor A [Thermanaerovibrio acidaminovorans DSM
6589]
gi|269100236|gb|ACZ19223.1| ribosome-binding factor A [Thermanaerovibrio acidaminovorans DSM
6589]
Length = 137
Score = 41.6 bits (96), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 3/75 (4%)
Query: 44 ISEVCMSVDLRVATVYISLPLDVSP-DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFR 102
++ V S DL VA VY ++ LD S + V L IRG +GR +R LR +PE RF
Sbjct: 35 LTGVSCSKDLSVAKVYFTV-LDRSKVEEVRLGLEGASGLIRGMLGREMR-LRKIPEFRFI 92
Query: 103 YDTSLQSYWKLNALM 117
YD + +++A++
Sbjct: 93 YDDTEDRAGRVDAIL 107
>gi|169831090|ref|YP_001717072.1| ribosome-binding factor A [Candidatus Desulforudis audaxviator
MP104C]
gi|169637934|gb|ACA59440.1| ribosome-binding factor A [Candidatus Desulforudis audaxviator
MP104C]
Length = 119
Score = 41.6 bits (96), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 42 ISISEVCMSVDLRVATVYIS-LPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELR 100
++++ V +S DLR A V++S L + D + L FIR +G+ +R LRY PE+
Sbjct: 34 VTVTAVEVSSDLRYAKVFVSVLGSNEDQDASLKVLRGAQGFIRTELGKRIR-LRYTPEVS 92
Query: 101 FRYDTSLQSYWKL 113
F +D S++ ++
Sbjct: 93 FVHDPSIEEGTRI 105
>gi|108757332|ref|YP_630299.1| ribosome-binding factor A [Myxococcus xanthus DK 1622]
gi|122389557|sp|Q1DAM4|RBFA_MYXXD RecName: Full=Ribosome-binding factor A
gi|108461212|gb|ABF86397.1| ribosome-binding factor A [Myxococcus xanthus DK 1622]
Length = 119
Score = 41.6 bits (96), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 59/109 (54%), Gaps = 6/109 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
R RVG+E+++A+ ++ +D I I+I+ V +S DLRVA V+ S+ + +R
Sbjct: 6 RPERVGQEIQAAIGDLLTRGMLRDPRIG--YITITGVKVSPDLRVARVFYSM-MGNEQER 62
Query: 71 VIS--ALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ L F+R + ++ NLR PE+ F +D S+ K++ L+
Sbjct: 63 ADTQKGLEAAKGFVRREVTSAV-NLRVSPEIFFSFDESVGEGDKIDRLL 110
>gi|291279904|ref|YP_003496739.1| ribosome-binding factor A [Deferribacter desulfuricans SSM1]
gi|290754606|dbj|BAI80983.1| ribosome-binding factor A [Deferribacter desulfuricans SSM1]
Length = 115
Score = 41.6 bits (96), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 59/108 (54%), Gaps = 5/108 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI-SLPLDVSPD 69
RA RV E +R L +I+ E +D L+ + I+ V +S DL +A +Y S L++ +
Sbjct: 6 RARRVSELIREELSKLIIY-EVKDPLVKS--VIITAVKVSNDLSLAKIYFRSYDLEMDLN 62
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
V+ LN + F+R I +SLR L+ +P L F D + K++ ++
Sbjct: 63 DVLKGLNRSKGFLRENIKKSLR-LKKIPSLEFYIDDVVDEGLKIDNII 109
>gi|15834989|ref|NP_296748.1| ribosome-binding factor A [Chlamydia muridarum Nigg]
gi|13431817|sp|Q9PKU1|RBFA_CHLMU RecName: Full=Ribosome-binding factor A
gi|8163212|gb|AAF73551.1| ribosome-binding factor A [Chlamydia muridarum Nigg]
Length = 133
Score = 41.6 bits (96), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 53/94 (56%), Gaps = 3/94 (3%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVS 67
+RR +V +R ++ VIL + + IS I+I+ V +S DL+ A VY+S +P + S
Sbjct: 4 NRRMKKVNAMLRESIAKVILK-DVKHPKISNRWITITRVSLSRDLQSARVYVSIMPHENS 62
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRF 101
+ ++AL + FI + + + L+Y P+L F
Sbjct: 63 QEETLAALKASAGFIACQASKDVV-LKYFPDLNF 95
>gi|319952940|ref|YP_004164207.1| ribosome-binding factor a [Cellulophaga algicola DSM 14237]
gi|319421600|gb|ADV48709.1| ribosome-binding factor A [Cellulophaga algicola DSM 14237]
Length = 130
Score = 41.6 bits (96), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 52/102 (50%), Gaps = 2/102 (1%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS 67
++R ++G ++ + V L D + +IS+S+V ++ DL +A VY+S+
Sbjct: 2 ETQRQKKIGGVIQKDIADV-LQRAATDGGLRGTLISVSKVIVTTDLSIAKVYVSIFPTKD 60
Query: 68 PDRVISALNCNIKFIRGRIGRSLRN-LRYVPELRFRYDTSLQ 108
++ + N I+ + + +N LR +PEL F D SL+
Sbjct: 61 AQELLKGMKSNQPLIKHELAQRTKNQLRRMPELMFFLDDSLE 102
>gi|124007683|ref|ZP_01692386.1| ribosome-binding factor A [Microscilla marina ATCC 23134]
gi|123986805|gb|EAY26577.1| ribosome-binding factor A [Microscilla marina ATCC 23134]
Length = 128
Score = 41.6 bits (96), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 42 ISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRN-LRYVPELR 100
++I+ V ++ DL +A VY+S+ V+ N K IR + R ++N +R +PELR
Sbjct: 34 VTITNVKVTPDLGIAYVYLSILAASDKQAVVDIAEDNNKMIRQVLARKIKNQVRAIPELR 93
Query: 101 FRYDTSLQSYWKLNALMCLPKIP 123
F D + K++ L IP
Sbjct: 94 FFLDDTSDYVQKMDELFDNLDIP 116
>gi|217970110|ref|YP_002355344.1| ribosome-binding factor A [Thauera sp. MZ1T]
gi|217507437|gb|ACK54448.1| ribosome-binding factor A [Thauera sp. MZ1T]
Length = 141
Score = 41.6 bits (96), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 59/117 (50%), Gaps = 13/117 (11%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRD----VISISEVCMSVDLRVATVYIS 61
PK R+ RV E++R L +I RL +D I++++V ++ D A V+ +
Sbjct: 2 PKEYSRSQRVVEQIRRELAELI-------RLEVKDPRVGFITLTDVEITPDYAHAKVFFT 54
Query: 62 -LPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ + ++ L F+R +GR +R + +PEL F YD S++ +L+ L+
Sbjct: 55 NMTGEADVPEILQGLRRASGFLRRELGRRIR-IHTIPELHFHYDRSVEEGSRLSQLI 110
>gi|114566434|ref|YP_753588.1| hypothetical protein Swol_0901 [Syntrophomonas wolfei subsp. wolfei
str. Goettingen]
gi|122318494|sp|Q0AYI7|RBFA_SYNWW RecName: Full=Ribosome-binding factor A
gi|114337369|gb|ABI68217.1| ribosome-binding factor A [Syntrophomonas wolfei subsp. wolfei str.
Goettingen]
Length = 122
Score = 41.6 bits (96), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 58/111 (52%), Gaps = 3/111 (2%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD-V 66
+ RR R+ E+ L +I E +D I +SI+ + +S D A V IS+ D +
Sbjct: 2 SKRRQERMSVEIMRVLSQII-QEEIKDPRIEFKNLSITRIDLSNDYSHARVNISILGDEI 60
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ + AL +IR + + L+ +R+ PEL FR D S++ ++++L+
Sbjct: 61 QREEAMKALQKAKGYIRSALAQQLK-VRHAPELEFRLDRSIEHGIRISSLL 110
>gi|325915556|ref|ZP_08177867.1| ribosome-binding factor A [Xanthomonas vesicatoria ATCC 35937]
gi|325538272|gb|EGD09957.1| ribosome-binding factor A [Xanthomonas vesicatoria ATCC 35937]
Length = 130
Score = 41.6 bits (96), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 57/111 (51%), Gaps = 4/111 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
K+ R RV +VR L I++ +D + +S+S+V +S DL A V+++
Sbjct: 4 KSFHRTDRVSAQVRRDL-GTIVHAAVRDHGLP--SVSVSDVEISRDLAHAKVFVTALQQE 60
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ L +R ++ R+++ LR+VPEL F YD S+ +++ L+
Sbjct: 61 RSAEAVKGLKEIAGQLRTQLARAMK-LRHVPELHFHYDDSVDRGERIDNLL 110
>gi|307825111|ref|ZP_07655332.1| ribosome-binding factor A [Methylobacter tundripaludum SV96]
gi|307733859|gb|EFO04715.1| ribosome-binding factor A [Methylobacter tundripaludum SV96]
Length = 120
Score = 41.6 bits (96), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 59/110 (53%), Gaps = 6/110 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
R RV +++ L V+ + RL I+I+EV ++ DL VA VY++ L +D
Sbjct: 7 RNARVSSQMQKELSLVLQRDIDDSRL---GFITINEVVVTKDLAVAKVYVTVLNVDEQGK 63
Query: 70 RV-ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ + LN IR ++ + +R LR++ +LRF YD S + +++ L+
Sbjct: 64 KANVKLLNEMSPVIRHQLAKRMR-LRHISDLRFYYDDSFDTGMRVSELLS 112
>gi|269123539|ref|YP_003306116.1| ribosome-binding factor A [Streptobacillus moniliformis DSM 12112]
gi|268314865|gb|ACZ01239.1| ribosome-binding factor A [Streptobacillus moniliformis DSM 12112]
Length = 124
Score = 41.2 bits (95), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 48/82 (58%), Gaps = 4/82 (4%)
Query: 39 RDVISISEVCMSVDLRVATVYISL---PLDVSPDRVISALNCNIKFIRGRIGRSLRNLRY 95
R+++++ V +S D R A V +S+ +++ ++++ LN F R ++G +L +RY
Sbjct: 31 RNLVTVKSVNLSPDARYADVIMSILDYKQNINKEKLLEELNKLKGFFRKKVGENLE-IRY 89
Query: 96 VPELRFRYDTSLQSYWKLNALM 117
PE+R D S++ K++ ++
Sbjct: 90 TPEIRIHLDDSVEYSVKISKIL 111
>gi|58582840|ref|YP_201856.1| ribosome-binding factor A [Xanthomonas oryzae pv. oryzae KACC10331]
gi|84624707|ref|YP_452079.1| ribosome-binding factor A [Xanthomonas oryzae pv. oryzae MAFF
311018]
gi|62510970|sp|Q5GXV0|RBFA_XANOR RecName: Full=Ribosome-binding factor A
gi|123521403|sp|Q2P0X2|RBFA_XANOM RecName: Full=Ribosome-binding factor A
gi|58427434|gb|AAW76471.1| ribosomal-binding factor A [Xanthomonas oryzae pv. oryzae
KACC10331]
gi|84368647|dbj|BAE69805.1| ribosomal-binding factor A [Xanthomonas oryzae pv. oryzae MAFF
311018]
Length = 130
Score = 41.2 bits (95), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 57/111 (51%), Gaps = 4/111 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
K+ R RV +VR L I++ +D + +S+S+V +S DL A V+++
Sbjct: 4 KSFHRTDRVSAQVRRDL-GTIVHAAVRDHGLPS--VSVSDVEISRDLAHAKVFVTALQQE 60
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ L +R ++ R+++ LR+VPEL F YD S+ +++ L+
Sbjct: 61 RSAEAVKGLKDIAGQLRTQLARAMK-LRHVPELHFHYDDSVDRGERIDNLL 110
>gi|24372788|ref|NP_716830.1| ribosome-binding factor A [Shewanella oneidensis MR-1]
gi|29427753|sp|Q8EHL4|RBFA_SHEON RecName: Full=Ribosome-binding factor A
gi|24346873|gb|AAN54275.1|AE015564_6 ribosome-binding factor A [Shewanella oneidensis MR-1]
Length = 147
Score = 41.2 bits (95), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 62/116 (53%), Gaps = 8/116 (6%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K R R+G++++ L V+L + +D I +++++V +S DL A V+++ +
Sbjct: 2 AKEFSRTRRIGQQLQQEL-AVVLQRDMKDPRIG--FVTVNDVDVSRDLSYAKVFVTF-FE 57
Query: 66 VSPDRVISALNCNIK---FIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
D V LN I +IR + ++ LR +PE+RF YD+SL +++ L+
Sbjct: 58 EDKDVVQEKLNALIAAAPYIRTLVAGRMK-LRVMPEIRFVYDSSLVEGMRMSNLVS 112
>gi|21243415|ref|NP_642997.1| ribosome-binding factor A [Xanthomonas axonopodis pv. citri str.
306]
gi|24418644|sp|Q8PJ56|RBFA_XANAC RecName: Full=Ribosome-binding factor A
gi|21108966|gb|AAM37533.1| ribosomal-binding factor A [Xanthomonas axonopodis pv. citri str.
306]
Length = 130
Score = 41.2 bits (95), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 56/111 (50%), Gaps = 4/111 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
K+ R RV +VR L ++ + L S +S+S+V +S DL A V+++
Sbjct: 4 KSFHRTDRVSAQVRRDLGTIVHAAVRDNGLPS---VSVSDVEISRDLAHAKVFVTALQQE 60
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ L +R ++ R+++ LR+VPEL F YD S+ +++ L+
Sbjct: 61 RSAEAVKGLKEIAGQLRTQLARAMK-LRHVPELHFHYDDSVDRGERIDNLL 110
>gi|166712597|ref|ZP_02243804.1| ribosome-binding factor A [Xanthomonas oryzae pv. oryzicola BLS256]
Length = 130
Score = 41.2 bits (95), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 57/111 (51%), Gaps = 4/111 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
K+ R RV +VR L I++ +D + +S+S+V +S DL A V+++
Sbjct: 4 KSFHRTDRVSAQVRRDL-GTIVHAAVRDHGLP--SVSVSDVEISRDLAHAKVFVTALQQE 60
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ L +R ++ R+++ LR+VPEL F YD S+ +++ L+
Sbjct: 61 RSAEAVKGLKDIAGQLRTQLARAMK-LRHVPELHFHYDDSVDRGERIDNLL 110
>gi|213962361|ref|ZP_03390624.1| ribosome-binding factor A [Capnocytophaga sputigena Capno]
gi|213955027|gb|EEB66346.1| ribosome-binding factor A [Capnocytophaga sputigena Capno]
Length = 130
Score = 41.2 bits (95), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 41 VISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGR-SLRNLRYVPEL 99
++S+++V ++VDL VA VY+S+ + V+ + N I+ + + + R +PEL
Sbjct: 34 LVSVTKVNVTVDLSVAKVYLSVFPEAKAAEVLKGVTSNAPLIKHELSQITKHQFRRMPEL 93
Query: 100 RFRYDTSLQ 108
F D SLQ
Sbjct: 94 FFYIDDSLQ 102
>gi|294085146|ref|YP_003551906.1| ribosome-binding factor A [Candidatus Puniceispirillum marinum
IMCC1322]
gi|292664721|gb|ADE39822.1| ribosome-binding factor A [Candidatus Puniceispirillum marinum
IMCC1322]
Length = 129
Score = 41.2 bits (95), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 63/110 (57%), Gaps = 3/110 (2%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-DVS 67
S+R LRVGE +R AL ++ +F D + I+ISE+ +S DL A VY ++PL V+
Sbjct: 15 SQRQLRVGETLRHALSDILFREDFFDPDLENVSITISEISISPDLSNARVY-TMPLGGVN 73
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ V+ ALN I+ + + + +LR P L+F D S ++ ++N L
Sbjct: 74 VEVVLPALNRLAPKIQSMVAQRV-HLRRAPRLKFLLDESFENAARMNVLF 122
>gi|168062353|ref|XP_001783145.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162665343|gb|EDQ52031.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 140
Score = 41.2 bits (95), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 41/67 (61%), Gaps = 2/67 (2%)
Query: 43 SISEVCMSVDLRVATVYISLPLDVSPDRV-ISALNCNIKFIRGRIGRSLRNLRYVPELRF 101
+I++V +S DL+VA V++SL D V + L K++R +G+ + +LR P++RF
Sbjct: 52 TITDVEISNDLQVAKVFVSLYGDEREQEVALEGLKSKAKYVRMGLGKRM-SLRMTPDVRF 110
Query: 102 RYDTSLQ 108
D SL+
Sbjct: 111 VKDESLE 117
>gi|158336219|ref|YP_001517393.1| ribosome-binding factor A [Acaryochloris marina MBIC11017]
gi|189039525|sp|B0CDK8|RBFA_ACAM1 RecName: Full=Ribosome-binding factor A
gi|158306460|gb|ABW28077.1| ribosome-binding factor A [Acaryochloris marina MBIC11017]
Length = 138
Score = 41.2 bits (95), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 61/111 (54%), Gaps = 3/111 (2%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDV 66
RR RV E ++ + ++L++ DR+ S +IS++ V +S DL+ A +++S+ D
Sbjct: 3 TGRRVSRVAELIKREVSQMLLHSIKDDRVGS-GMISVTAVDLSGDLQHAKIFVSIYGTDE 61
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ ++ L ++R ++G + +LR PE+ F D S + ++ +L+
Sbjct: 62 ARAETMAGLESATGYVRKQLGHRI-HLRRTPEVIFCEDRSFEEGNQVLSLL 111
>gi|289665192|ref|ZP_06486773.1| ribosome-binding factor A [Xanthomonas campestris pv. vasculorum
NCPPB702]
gi|289667362|ref|ZP_06488437.1| ribosome-binding factor A [Xanthomonas campestris pv. musacearum
NCPPB4381]
Length = 130
Score = 41.2 bits (95), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 57/111 (51%), Gaps = 4/111 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
K+ R RV +VR L I++ +D + +S+S+V +S DL A V+++
Sbjct: 4 KSFHRTDRVSAQVRRDL-GTIVHAAVRDHGLPS--VSVSDVEISRDLAHAKVFVTALQQE 60
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ L +R ++ R+++ LR+VPEL F YD S+ +++ L+
Sbjct: 61 RSAEAVKGLKEIAGQLRTQLARAMK-LRHVPELHFHYDDSVDRGERIDNLL 110
>gi|172057845|ref|YP_001814305.1| ribosome-binding factor A [Exiguobacterium sibiricum 255-15]
gi|171990366|gb|ACB61288.1| ribosome-binding factor A [Exiguobacterium sibiricum 255-15]
Length = 113
Score = 41.2 bits (95), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 60/110 (54%), Gaps = 5/110 (4%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS- 67
S R+ RV E+VR + +++ + R+ ++++ V ++ DL+ AT++ S+ D +
Sbjct: 2 SVRSNRVAEQVRKEITQMLIKDVNDPRV---KAVTVTGVEVTGDLQQATIFYSVLGDETV 58
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ L + F+R IG +R LR PEL F DTS++ +++ L+
Sbjct: 59 REEARVGLEKSKGFMRKEIGSRIR-LRKTPELLFEIDTSVEYGSRIDELL 107
>gi|332879858|ref|ZP_08447547.1| ribosome-binding factor A [Capnocytophaga sp. oral taxon 329 str.
F0087]
gi|332682235|gb|EGJ55143.1| ribosome-binding factor A [Capnocytophaga sp. oral taxon 329 str.
F0087]
Length = 130
Score = 41.2 bits (95), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 41 VISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGR-SLRNLRYVPEL 99
++S+++V +++DL VA VY+S+ + V+ + N I+ + + + R +PEL
Sbjct: 34 LVSVTKVTVTIDLSVAKVYLSVFPEAKAAEVLKGVTSNSPLIKHELSQITKHQFRRMPEL 93
Query: 100 RFRYDTSLQ 108
F D SLQ
Sbjct: 94 LFYIDDSLQ 102
>gi|170017450|ref|YP_001728369.1| ribosome-binding factor A [Leuconostoc citreum KM20]
gi|238688972|sp|B1MZH3|RBFA_LEUCK RecName: Full=Ribosome-binding factor A
gi|169804307|gb|ACA82925.1| Ribosome-binding factor A [Leuconostoc citreum KM20]
Length = 117
Score = 41.2 bits (95), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 57/103 (55%), Gaps = 6/103 (5%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS 67
N +RA R+ +EV+ + ++L R+ +DV +++ V +S DL++AT+Y S+ D++
Sbjct: 3 NPQRAGRLAQEVQRDVTDLLLKRINDPRV--QDV-TVTSVELSGDLQIATIYYSILSDLA 59
Query: 68 PD--RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
D + + L IR +G L + PEL+F D S+Q
Sbjct: 60 SDGQKAQAGLEAASGLIRKELGARL-TVYKTPELKFVRDQSVQ 101
>gi|34496918|ref|NP_901133.1| ribosome-binding factor A [Chromobacterium violaceum ATCC 12472]
gi|39931751|sp|Q7NY12|RBFA_CHRVO RecName: Full=Ribosome-binding factor A
gi|34330314|gb|AAQ59138.2| ribosome-binding factor A [Chromobacterium violaceum ATCC 12472]
Length = 138
Score = 41.2 bits (95), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 42 ISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRF 101
I+I+ V ++ D A VY ++ +D + + AL+ + ++R +GR+++ +P+L F
Sbjct: 38 ITITAVEVTRDYSHAKVYYTVMVDSTREATQEALDSSAGYLRNELGRAIKMFS-MPQLHF 96
Query: 102 RYDTSLQSYWKLNALM 117
YD S++ L +L+
Sbjct: 97 VYDDSVERGMHLTSLI 112
>gi|57239196|ref|YP_180332.1| putative ribosome-binding factor A [Ehrlichia ruminantium str.
Welgevonden]
gi|58579154|ref|YP_197366.1| putative ribosome-binding factor A [Ehrlichia ruminantium str.
Welgevonden]
gi|15811168|gb|AAL08841.1|AF308672_2 hypothetical ribosome-binding factor A [Ehrlichia ruminantium]
gi|57161275|emb|CAH58196.1| putative ribosome-binding factor A [Ehrlichia ruminantium str.
Welgevonden]
gi|58417780|emb|CAI26984.1| Putative Ribosome-binding factor A [Ehrlichia ruminantium str.
Welgevonden]
Length = 115
Score = 41.2 bits (95), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 64/111 (57%), Gaps = 7/111 (6%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
S R L+V + A+ V++++ + I ++++S+V +S D++ ATV++ + D P
Sbjct: 7 SFRNLKVASVLSRAISRVLIHDIYS---IGCSIVNVSKVEVSKDVKNATVFVVIS-DDHP 62
Query: 69 DR--VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
D+ ++ LN ++ F+ + S +LRYVP+L F+ D + ++N L+
Sbjct: 63 DKENLVKELN-DVSFLIRKAIFSYVDLRYVPKLYFKIDYHFDNLVRVNQLL 112
>gi|58617207|ref|YP_196406.1| putative ribosome-binding factor A [Ehrlichia ruminantium str.
Gardel]
gi|58416819|emb|CAI27932.1| Putative Ribosome-binding factor A [Ehrlichia ruminantium str.
Gardel]
Length = 115
Score = 41.2 bits (95), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 64/111 (57%), Gaps = 7/111 (6%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
S R L+V + A+ V++++ + I ++++S+V +S D++ ATV++ + D P
Sbjct: 7 SFRNLKVASVLSRAISRVLIHDIYS---IGCSIVNVSKVEVSKDVKNATVFVVIS-DDHP 62
Query: 69 DR--VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
D+ ++ LN ++ F+ + S +LRYVP+L F+ D + ++N L+
Sbjct: 63 DKEDLVKELN-DVSFLIRKAIFSYVDLRYVPKLYFKIDYHFDNLVRVNQLL 112
>gi|163786898|ref|ZP_02181346.1| ribosome-binding factor A [Flavobacteriales bacterium ALC-1]
gi|159878758|gb|EDP72814.1| ribosome-binding factor A [Flavobacteriales bacterium ALC-1]
Length = 130
Score = 41.2 bits (95), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Query: 41 VISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRN-LRYVPEL 99
+IS+S+V ++VDL +A VY+S+ + ++ + N IR + + R+ LR +P+L
Sbjct: 34 IISVSKVSVTVDLSMAKVYLSIFPNKEAQPLLEGIRSNKPLIRHELSQRTRHQLRRMPQL 93
Query: 100 RFRYDTSLQ 108
F D SL+
Sbjct: 94 EFFIDDSLE 102
>gi|323453068|gb|EGB08940.1| hypothetical protein AURANDRAFT_63469 [Aureococcus anophagefferens]
Length = 248
Score = 41.2 bits (95), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 54/109 (49%), Gaps = 7/109 (6%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEF----QDRLISRDVISIS--EVCMSVDLR 54
M + SRR RV + VRS L VI + F DR+ + + S S +V +S DLR
Sbjct: 38 MAREEVDRSRRQSRVAQLVRSELATVIRDGAFLVKTGDRVDAEVLKSTSVLDVSVSPDLR 97
Query: 55 VATVYISLPLDVSPDR-VISALNCNIKFIRGRIGRSLRNLRYVPELRFR 102
AT I+ D S R S L N + +R + + L++ + VP + FR
Sbjct: 98 AATATITTLGDTSAKREAFSWLVKNERSVRYALAKRLKHSKRVPAVTFR 146
>gi|194246710|ref|YP_002004349.1| Ribosome-binding factor A [Candidatus Phytoplasma mali]
gi|259552045|sp|B3QZW6|RBFA_PHYMT RecName: Full=Ribosome-binding factor A
gi|193807067|emb|CAP18503.1| Ribosome-binding factor A [Candidatus Phytoplasma mali]
Length = 114
Score = 40.8 bits (94), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 42/70 (60%), Gaps = 4/70 (5%)
Query: 42 ISISEVCMSVDLRVATVYISLPLDVSPDRVISA---LNCNIKFIRGRIGRSLRNLRYVPE 98
I+++EV ++ DL A VY + L+ P+ + A + N IR + + +RN+R +PE
Sbjct: 32 INVTEVKLTNDLSFANVYYVI-LNNQPEFLSLAAEIIEKNKSTIRMLLAKKIRNIRKIPE 90
Query: 99 LRFRYDTSLQ 108
L F YDTSL+
Sbjct: 91 LVFIYDTSLE 100
>gi|288940252|ref|YP_003442492.1| ribosome-binding factor A [Allochromatium vinosum DSM 180]
gi|288895624|gb|ADC61460.1| ribosome-binding factor A [Allochromatium vinosum DSM 180]
Length = 127
Score = 40.8 bits (94), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 61/116 (52%), Gaps = 8/116 (6%)
Query: 5 NPKNSRRALRVGEEVRSALMWVILNNEFQD-RLISRDVISISEVCMSVDLRVATVYIS-L 62
N + R R+G E++ AL V++ ++ +D RL + I++ EV ++ DL A VY +
Sbjct: 2 NEREFDRTERIGAEMKRAL-AVLVRDQVKDPRLAN---ITVHEVRVTRDLAHAKVYFTCF 57
Query: 63 PLDVSPDRVISALNCNIK-FIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
P D LN + F+R + + +R LR +P+L F YD S+ L+ L+
Sbjct: 58 PSDEDTPAQERLLNKQLAGFLRHALAQEVR-LRAMPQLHFVYDESIAQGQHLSDLI 112
>gi|163754470|ref|ZP_02161592.1| ribosome-binding factor A [Kordia algicida OT-1]
gi|161325411|gb|EDP96738.1| ribosome-binding factor A [Kordia algicida OT-1]
Length = 133
Score = 40.8 bits (94), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 41 VISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRN-LRYVPEL 99
+IS+++V ++VDL VA VY+S+ ++ + N I+ + + +++ LR VP L
Sbjct: 37 IISVTKVNVTVDLSVAKVYLSIFPHNKGKELLEGIQSNAPLIKHELAQRVKHQLRKVPSL 96
Query: 100 RFRYDTSLQ 108
F D SL+
Sbjct: 97 TFYVDDSLE 105
>gi|332992819|gb|AEF02874.1| ribosome-binding factor A [Alteromonas sp. SN2]
Length = 133
Score = 40.8 bits (94), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 52/99 (52%), Gaps = 4/99 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL--PLDVSP 68
R RV ++V + IL NE++ R+ +I++S+V ++ DL A +Y+++ +
Sbjct: 7 RTDRVSQQVHKEVAS-ILQNEYKHRVGDMPLITVSDVDVTRDLAHAKIYVTIYNSTEEEG 65
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSL 107
R I L FIR + + LR +R VP L F D S+
Sbjct: 66 KRQIKQLAEFQPFIRSILAKRLR-MRSVPHLHFFEDKSI 103
>gi|91792368|ref|YP_562019.1| ribosome-binding factor A [Shewanella denitrificans OS217]
gi|123061155|sp|Q12QI0|RBFA_SHEDO RecName: Full=Ribosome-binding factor A
gi|91714370|gb|ABE54296.1| ribosome-binding factor A [Shewanella denitrificans OS217]
Length = 142
Score = 40.8 bits (94), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 64/114 (56%), Gaps = 6/114 (5%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLD 65
K R R+ ++++ L VIL + +D I +++++V +S DL A V+++ D
Sbjct: 3 KEFSRTRRIAQQLQQEL-AVILQRDMKDPRIG--FVTVNDVDVSRDLSYAKVFVTFYEED 59
Query: 66 VS-PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
++ ++ I+AL ++R + ++ LR +PELRF YD+SL +++ L+
Sbjct: 60 LTLVEQKIAALTAAAPYVRTLVAGRMK-LRVMPELRFIYDSSLVEGMRMSNLVS 112
>gi|332828398|gb|EGK01107.1| ribosome-binding factor A [Dysgonomonas gadei ATCC BAA-286]
Length = 117
Score = 40.8 bits (94), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 41 VISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSL-RNLRYVPEL 99
++S+S V +S DL +A VY+S+ ++ + N+K +R +G+ + + LR +PEL
Sbjct: 32 LVSVSTVRVSPDLGLAKVYLSIFPSEQGKELLDNIKTNVKALRFDLGQKVGKQLRVIPEL 91
Query: 100 RFRYDTSLQSYWKLNALMC 118
F D SL ++ L+
Sbjct: 92 SFYLDDSLDYLDNIDKLLG 110
>gi|254424610|ref|ZP_05038328.1| ribosome-binding factor A [Synechococcus sp. PCC 7335]
gi|196192099|gb|EDX87063.1| ribosome-binding factor A [Synechococcus sp. PCC 7335]
Length = 114
Score = 40.8 bits (94), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 48/82 (58%), Gaps = 2/82 (2%)
Query: 27 ILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDVSPDRVISALNCNIKFIRGR 85
+L N+ +D + ++SI++V ++ DL+ A +++S+ D + ++ L ++R +
Sbjct: 1 MLLNDIKDDRVGAGMVSITDVDVAGDLQHAKIFVSIYGTDEAKAETMAGLKAAEGYVRRQ 60
Query: 86 IGRSLRNLRYVPELRFRYDTSL 107
+G+ ++ LR PE+ F+ D S
Sbjct: 61 LGQRMK-LRRTPEVTFKEDRSF 81
>gi|71280573|ref|YP_268929.1| ribosome-binding factor A [Colwellia psychrerythraea 34H]
gi|123632666|sp|Q482T8|RBFA_COLP3 RecName: Full=Ribosome-binding factor A
gi|71146313|gb|AAZ26786.1| ribosome-binding factor A [Colwellia psychrerythraea 34H]
Length = 142
Score = 40.8 bits (94), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 63/110 (57%), Gaps = 8/110 (7%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
R RVG++++ + IL E +D +S + ++S V ++ DL A ++++ D + D
Sbjct: 7 RTDRVGQQIQKEI-ATILMREIKDPRLS--MTTVSAVEVTRDLAYAKIFVTFFND-NQDE 62
Query: 71 VISALNCNIK---FIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ ++L + +IR +G+ LR R +P LRF YD+S+ +++AL+
Sbjct: 63 IKASLEVLAEAEGYIRSLLGKRLR-ARIMPHLRFVYDSSMSEGVRMSALV 111
>gi|82702984|ref|YP_412550.1| ribosome-binding factor A [Nitrosospira multiformis ATCC 25196]
gi|123544258|sp|Q2Y7W3|RBFA_NITMU RecName: Full=Ribosome-binding factor A
gi|82411049|gb|ABB75158.1| ribosome-binding factor A [Nitrosospira multiformis ATCC 25196]
Length = 126
Score = 40.8 bits (94), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 63/113 (55%), Gaps = 5/113 (4%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
PK+ R LR+ ++++ L +I NE +D I +I+++ V +S D A V+ + +
Sbjct: 2 PKDYSRTLRIADQIQRELADLI-RNELKDPRIG--MITLTGVEVSQDYAHAKVFYTTLHN 58
Query: 66 VSPDRVI-SALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
S + ++ + L F+R ++ L+ LR +P+L F YD S++ +L+ L+
Sbjct: 59 ESDNFLVQNGLENAAGFLRTQLLHRLK-LRVIPQLHFIYDESIERGVRLSQLI 110
>gi|288926934|ref|ZP_06420832.1| ribosome-binding factor A [Prevotella buccae D17]
gi|315607048|ref|ZP_07882052.1| ribosome-binding factor A [Prevotella buccae ATCC 33574]
gi|288336293|gb|EFC74676.1| ribosome-binding factor A [Prevotella buccae D17]
gi|315251102|gb|EFU31087.1| ribosome-binding factor A [Prevotella buccae ATCC 33574]
Length = 112
Score = 40.8 bits (94), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 33 QDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSL-R 91
Q R + ++S++ +S DL V T Y+S+ + + N K +R +GR + +
Sbjct: 24 QTRQMRGMMVSVTRAKVSPDLSVCTAYLSVFPSEKGAETLKNITANEKSVRFELGRRVGK 83
Query: 92 NLRYVPELRFRYDTSLQSYWKLNALM 117
LR +PELRF D SL ++ L+
Sbjct: 84 QLRIIPELRFFLDDSLDYLEHIDELL 109
>gi|116624265|ref|YP_826421.1| ribosome-binding factor A [Candidatus Solibacter usitatus
Ellin6076]
gi|122253043|sp|Q01W29|RBFA_SOLUE RecName: Full=Ribosome-binding factor A
gi|116227427|gb|ABJ86136.1| ribosome-binding factor A [Candidatus Solibacter usitatus
Ellin6076]
Length = 123
Score = 40.8 bits (94), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 49/98 (50%), Gaps = 5/98 (5%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS 67
+ RR LRV E VR L +I R++ +V +EV +S D R A++ I+ D
Sbjct: 2 DERRTLRVSEAVREELSEIISFEMDDPRVLEAEV---TEVMVSPDSRHASIKIACRGDEK 58
Query: 68 P-DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYD 104
+ I+AL ++R + L LR+VPEL F D
Sbjct: 59 KQNHAIAALEHAAGYLRRELASRL-QLRHVPELHFERD 95
>gi|225023302|ref|ZP_03712494.1| hypothetical protein EIKCOROL_00155 [Eikenella corrodens ATCC
23834]
gi|224943947|gb|EEG25156.1| hypothetical protein EIKCOROL_00155 [Eikenella corrodens ATCC
23834]
Length = 123
Score = 40.8 bits (94), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 42 ISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRF 101
I+I+EV ++ D ATVY ++ D + + AL +R + R ++ + PEL F
Sbjct: 38 ITINEVELTRDYSHATVYYTVLDDATREITAEALEHAKGHLRSELSRRIKLFK-TPELHF 96
Query: 102 RYDTSLQSYWKLNALM 117
+YD SL+ ++ L+
Sbjct: 97 KYDQSLERGMSISQLI 112
>gi|223984476|ref|ZP_03634609.1| hypothetical protein HOLDEFILI_01903 [Holdemania filiformis DSM
12042]
gi|223963547|gb|EEF67926.1| hypothetical protein HOLDEFILI_01903 [Holdemania filiformis DSM
12042]
Length = 114
Score = 40.8 bits (94), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 47/78 (60%), Gaps = 2/78 (2%)
Query: 42 ISISEVCMSVDLRVATVYIS-LPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELR 100
++I++V ++ D AT+Y+S L + + ALN FIR +G+ L ++R VP+L
Sbjct: 32 VTITDVQVTNDYSYATIYVSFLGKEERKQAGLKALNRAKGFIRSELGKRL-SIRKVPDLI 90
Query: 101 FRYDTSLQSYWKLNALMC 118
F+ D SL+ ++++++
Sbjct: 91 FKLDDSLEKGERIDSIIS 108
>gi|167756912|ref|ZP_02429039.1| hypothetical protein CLORAM_02461 [Clostridium ramosum DSM 1402]
gi|237734620|ref|ZP_04565101.1| ribosome-binding factor A [Mollicutes bacterium D7]
gi|167703087|gb|EDS17666.1| hypothetical protein CLORAM_02461 [Clostridium ramosum DSM 1402]
gi|229382440|gb|EEO32531.1| ribosome-binding factor A [Coprobacillus sp. D7]
Length = 115
Score = 40.8 bits (94), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 43 SISEVCMSVDLRVATVYIS-LPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRF 101
+I+ V + DL +A VY++ L D + + ALN + FIR + + L +R VPEL F
Sbjct: 33 TITAVDTTTDLSIAKVYVTFLGKDFDTRKGMEALNRSKGFIRSLLAKRL-TIRKVPELIF 91
Query: 102 RYDTSLQSYWKLNALM 117
DTSL+ K+ ++
Sbjct: 92 VNDTSLEYGNKIEKII 107
>gi|304310508|ref|YP_003810106.1| Ribosome-binding factor A [gamma proteobacterium HdN1]
gi|301796241|emb|CBL44449.1| Ribosome-binding factor A [gamma proteobacterium HdN1]
Length = 145
Score = 40.8 bits (94), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 66/117 (56%), Gaps = 7/117 (5%)
Query: 5 NPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LP 63
+P+ +R R+ ++++ L V+L E D + ++++S V ++ DL A VY+S +
Sbjct: 4 SPRGYKRTDRIADQIQREL-AVLLQREISDPRVG--MVTVSGVKVARDLSFADVYVSFMT 60
Query: 64 LDVSPD--RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
L+ + + + ++ L F+R + ++++ LR +P LRF +D + + +++L+
Sbjct: 61 LEKAEEVKQALAVLEHASGFLRSMLAKNIK-LRVIPRLRFHFDQVIVTGPHISSLIT 116
>gi|329119691|ref|ZP_08248372.1| ribosome-binding factor A [Neisseria bacilliformis ATCC BAA-1200]
gi|327464288|gb|EGF10592.1| ribosome-binding factor A [Neisseria bacilliformis ATCC BAA-1200]
Length = 123
Score = 40.8 bits (94), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 59/126 (46%), Gaps = 8/126 (6%)
Query: 3 NKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL 62
NK + R RV E++ L ++ R I+I+EV +S D AT+Y ++
Sbjct: 2 NKTRRGYARQDRVKEQIMRELAEMVRTGLKDPRA---GFITINEVDVSRDYSHATIYYTV 58
Query: 63 PLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
D + D +AL +R + + ++ + PEL F+YD SL+ ++ L+
Sbjct: 59 LDDSTRDITEAALEHAKGHLRSELAKRIKLFK-TPELHFKYDQSLERGMSISHLIE---- 113
Query: 123 PVALEK 128
VA EK
Sbjct: 114 QVAAEK 119
>gi|169350442|ref|ZP_02867380.1| hypothetical protein CLOSPI_01210 [Clostridium spiroforme DSM 1552]
gi|169292762|gb|EDS74895.1| hypothetical protein CLOSPI_01210 [Clostridium spiroforme DSM 1552]
Length = 114
Score = 40.8 bits (94), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 43 SISEVCMSVDLRVATVYIS-LPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRF 101
+I+ V ++ DL +A +Y++ L D + + AL + FIR + + L +R VPEL F
Sbjct: 33 TITAVDLTNDLSIAKIYVTFLGKDFDTRKGMQALERSKGFIRSLLAKRL-TIRKVPELHF 91
Query: 102 RYDTSLQSYWKLNALM 117
DTSLQ K+ ++
Sbjct: 92 VNDTSLQYGNKIEKII 107
>gi|83815185|ref|YP_445893.1| ribosome-binding factor A [Salinibacter ruber DSM 13855]
gi|294507803|ref|YP_003571861.1| Ribosome-binding factor A [Salinibacter ruber M8]
gi|123528568|sp|Q2S1N8|RBFA_SALRD RecName: Full=Ribosome-binding factor A
gi|83756579|gb|ABC44692.1| ribosome-binding factor A [Salinibacter ruber DSM 13855]
gi|294344131|emb|CBH24909.1| Ribosome-binding factor A [Salinibacter ruber M8]
Length = 132
Score = 40.4 bits (93), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 51/94 (54%), Gaps = 5/94 (5%)
Query: 27 ILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR--VISALNCNIKFIRG 84
IL E+ DRL + +++I+ ++ DL +A +Y S+ D + +R L IR
Sbjct: 19 ILQREYADRL--QPMVTITRARVTGDLSIAYLYASVMGDTAEEREATFRQLESLADEIRN 76
Query: 85 RIGRSLRN-LRYVPELRFRYDTSLQSYWKLNALM 117
++ +R+ +R +PEL+F +D SL+ ++ L
Sbjct: 77 QLASRIRHKVREIPELKFFHDESLEEAKRMENLF 110
>gi|221134840|ref|ZP_03561143.1| ribosome-binding factor A [Glaciecola sp. HTCC2999]
Length = 144
Score = 40.4 bits (93), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 60/111 (54%), Gaps = 6/111 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
R RV ++V + ILN EF+ + ++++S V +S DL A VY++ L++ ++
Sbjct: 7 RTDRVSQQVHKEIAS-ILNQEFKHQAPELCMVTVSGVEISRDLAHAKVYVTF-LEMDEEK 64
Query: 71 V---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
V ++ L F+RG + R +R +R P L+F D S+ +++ ++
Sbjct: 65 VKASMALLEEGKGFVRGLLSRRVR-MRNTPALKFIQDRSITEGMRISNIVS 114
>gi|109898016|ref|YP_661271.1| ribosome-binding factor A [Pseudoalteromonas atlantica T6c]
gi|123064712|sp|Q15V71|RBFA_PSEA6 RecName: Full=Ribosome-binding factor A
gi|109700297|gb|ABG40217.1| ribosome-binding factor A [Pseudoalteromonas atlantica T6c]
Length = 138
Score = 40.4 bits (93), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 57/109 (52%), Gaps = 4/109 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP-- 68
R RVG+++ + IL NEF++R ++++S V +S DL +Y++ +
Sbjct: 7 RTDRVGQQIHKEIAS-ILQNEFKNRDPRLGMVTVSAVEVSRDLAYTKIYVTFFENDEEVM 65
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
D +S L N +IR + +R +R VP ++F D SL +++ L+
Sbjct: 66 DNYLSILEENKGYIRTLLANRMR-MRAVPAIKFVRDGSLSEGIRISNLV 113
>gi|227513186|ref|ZP_03943235.1| ribosome-binding factor A [Lactobacillus buchneri ATCC 11577]
gi|227083567|gb|EEI18879.1| ribosome-binding factor A [Lactobacillus buchneri ATCC 11577]
Length = 116
Score = 40.4 bits (93), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 42/75 (56%), Gaps = 3/75 (4%)
Query: 42 ISISEVCMSVDLRVATVYISLPLDVSPDRVISA--LNCNIKFIRGRIGRSLRNLRYVPEL 99
++++ V ++ DL+ AT+Y S+ D D +A L IRG +G L ++ PE+
Sbjct: 33 VTLTGVEVTGDLQQATIYYSILSDDKADEETTAKGLEKATGLIRGELGSRL-SIYKTPEI 91
Query: 100 RFRYDTSLQSYWKLN 114
+F DTS+Q K++
Sbjct: 92 KFELDTSVQYGDKID 106
>gi|260061333|ref|YP_003194413.1| ribosome-binding factor A [Robiginitalea biformata HTCC2501]
gi|88785465|gb|EAR16634.1| ribosome-binding factor A [Robiginitalea biformata HTCC2501]
Length = 135
Score = 40.4 bits (93), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 41 VISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRN-LRYVPEL 99
++S+++V ++ DL +A VY+S+ +I + R + R RN LR VPEL
Sbjct: 39 ILSVTKVHVTSDLSIAKVYVSIFPVKEATGLIKGIQAQKAQFRHELARRTRNQLRRVPEL 98
Query: 100 RFRYDTSLQ 108
+F D SL+
Sbjct: 99 QFYLDDSLE 107
>gi|149369322|ref|ZP_01889174.1| ribosome-binding factor A [unidentified eubacterium SCB49]
gi|149356749|gb|EDM45304.1| ribosome-binding factor A [unidentified eubacterium SCB49]
Length = 131
Score = 40.4 bits (93), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 41 VISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRN-LRYVPEL 99
+IS+S+V ++VDL +A VY+S+ + ++ +N I+ ++ + R+ LR +PEL
Sbjct: 35 LISVSKVNVTVDLSIAKVYVSVFPTTNAAAIVKEINDGKSKIKHQVAQLTRHQLRRMPEL 94
Query: 100 RFRYDTSL 107
F D SL
Sbjct: 95 HFFNDDSL 102
>gi|331006258|ref|ZP_08329578.1| Ribosome-binding factor A [gamma proteobacterium IMCC1989]
gi|330419947|gb|EGG94293.1| Ribosome-binding factor A [gamma proteobacterium IMCC1989]
Length = 130
Score = 40.4 bits (93), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 7/115 (6%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL--- 62
K R+ RV + ++ L I E +D + ++++++V ++ D+ A VY++
Sbjct: 2 AKEFSRSDRVADAIQRILATTI-RQEVRDPRVG--MVNVNDVTVTRDMAYAKVYVTFVGR 58
Query: 63 PLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
D ALN F+RG + + L ++R P+LRF YD + KL+ L+
Sbjct: 59 DSDTESREAADALNHAAGFLRGIVAKEL-DIRITPKLRFIYDKTSVEGQKLSNLI 112
>gi|188577679|ref|YP_001914608.1| ribosome-binding factor A [Xanthomonas oryzae pv. oryzae PXO99A]
gi|188522131|gb|ACD60076.1| ribosome-binding factor A [Xanthomonas oryzae pv. oryzae PXO99A]
Length = 115
Score = 40.4 bits (93), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 42 ISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRF 101
+S+S+V +S DL A V+++ + L +R ++ R+++ LR+VPEL F
Sbjct: 21 VSVSDVEISRDLAHAKVFVTALQQERSAEAVKGLKDIAGQLRTQLARAMK-LRHVPELHF 79
Query: 102 RYDTSLQSYWKLNALM 117
YD S+ +++ L+
Sbjct: 80 HYDDSVDRGERIDNLL 95
>gi|46446394|ref|YP_007759.1| putative ribosome binding factor A [Candidatus Protochlamydia
amoebophila UWE25]
gi|61215033|sp|Q6MD65|RBFA_PARUW RecName: Full=Ribosome-binding factor A
gi|46400035|emb|CAF23484.1| putative ribosome binding factor A [Candidatus Protochlamydia
amoebophila UWE25]
Length = 131
Score = 40.4 bits (93), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 40 DVISISEVCMSVDLRVATVYISL-PLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPE 98
++++++ V +S DLR A V+IS+ + + I ALN FI + + +RY PE
Sbjct: 32 ELVTVTRVQISRDLRYAKVFISIIGSEQAKVETIEALNSAAGFIAVNASQKVV-MRYFPE 90
Query: 99 LRFRYDTSLQSYWKLNALM 117
L F+ D S+ + ++ L+
Sbjct: 91 LNFKLDDSVDKHMRIEELL 109
>gi|28198123|ref|NP_778437.1| ribosome-binding factor A [Xylella fastidiosa Temecula1]
gi|182680751|ref|YP_001828911.1| ribosome-binding factor A [Xylella fastidiosa M23]
gi|32129950|sp|Q87EV3|RBFA_XYLFT RecName: Full=Ribosome-binding factor A
gi|238691074|sp|B2I727|RBFA_XYLF2 RecName: Full=Ribosome-binding factor A
gi|28056183|gb|AAO28086.1| ribosomal-binding factor A [Xylella fastidiosa Temecula1]
gi|182630861|gb|ACB91637.1| ribosome-binding factor A [Xylella fastidiosa M23]
gi|307579215|gb|ADN63184.1| ribosome-binding factor A [Xylella fastidiosa subsp. fastidiosa
GB514]
Length = 125
Score = 40.4 bits (93), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 42 ISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRF 101
+S+S+V ++ D+ A V+++ ++ L + +R ++ +++R LR+VPEL F
Sbjct: 36 MSVSDVEVTRDMAHAKVFVTALQAERSFEAVAGLKALARELRMQLAQTMR-LRFVPELHF 94
Query: 102 RYDTSLQSYWKLNALM 117
YD SL +++ L+
Sbjct: 95 HYDDSLDRGERIDTLL 110
>gi|257865913|ref|ZP_05645566.1| ribosome-binding factor A [Enterococcus casseliflavus EC30]
gi|257872246|ref|ZP_05651899.1| ribosome-binding factor A [Enterococcus casseliflavus EC10]
gi|257875540|ref|ZP_05655193.1| ribosome-binding factor A [Enterococcus casseliflavus EC20]
gi|325569924|ref|ZP_08145918.1| ribosome-binding factor A [Enterococcus casseliflavus ATCC 12755]
gi|257799847|gb|EEV28899.1| ribosome-binding factor A [Enterococcus casseliflavus EC30]
gi|257806410|gb|EEV35232.1| ribosome-binding factor A [Enterococcus casseliflavus EC10]
gi|257809706|gb|EEV38526.1| ribosome-binding factor A [Enterococcus casseliflavus EC20]
gi|325157047|gb|EGC69215.1| ribosome-binding factor A [Enterococcus casseliflavus ATCC 12755]
Length = 116
Score = 40.4 bits (93), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 60/115 (52%), Gaps = 10/115 (8%)
Query: 5 NPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL 64
N ++ R A + +EV L + + QD ++I++V ++ DL+ AT++ S
Sbjct: 3 NYRDRRVAQEILKEVNQILRKKVRDPRVQD-------VTITDVRVTGDLQQATIFYSTLT 55
Query: 65 DVSPD--RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
D++ D + + L +R +G++L L VPE++F D S+Q K++ ++
Sbjct: 56 DLASDKQKAQAGLEKATGLVRRELGQAL-TLYKVPEIQFELDESVQYGNKIDEMI 109
>gi|30248766|ref|NP_840836.1| ribosome-binding factor A [Nitrosomonas europaea ATCC 19718]
gi|34098452|sp|Q82WC9|RBFA_NITEU RecName: Full=Ribosome-binding factor A
gi|30180361|emb|CAD84673.1| Ribosome-binding factor A [Nitrosomonas europaea ATCC 19718]
Length = 117
Score = 40.4 bits (93), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 58/108 (53%), Gaps = 5/108 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATV-YISLPLDVSPD 69
R +RV ++++ L +I NE D + +++++ V ++ D A V Y +L D +
Sbjct: 7 RTVRVADQIQRELALLI-QNEIMDPRVG--MVTLTGVEVTRDYAYAKVFYTTLGGDENIQ 63
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
V L F+R ++ +R LR VP+L+F YD S++ KL+ L+
Sbjct: 64 LVEEGLKHAAGFLRSQLAGKIR-LRVVPQLQFVYDESVERGMKLSRLI 110
>gi|86144147|ref|ZP_01062484.1| ribosome-binding factor A [Leeuwenhoekiella blandensis MED217]
gi|85829409|gb|EAQ47874.1| ribosome-binding factor A [Leeuwenhoekiella blandensis MED217]
Length = 130
Score = 40.0 bits (92), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 43/70 (61%), Gaps = 3/70 (4%)
Query: 41 VISISEVCMSVDLRVATVYISL-PLDVSPDRVISALNCNIKFIRGRIG-RSLRNLRYVPE 98
++S+S+V ++ DL A VYIS+ P D + + ++ ++ FI+ I R+ LR +PE
Sbjct: 34 IVSVSKVNVTTDLSQAKVYISVFPHDKASE-ILKEVSAVKPFIKHEIANRTRHQLRRMPE 92
Query: 99 LRFRYDTSLQ 108
L+F D SL+
Sbjct: 93 LQFYIDDSLE 102
>gi|318042498|ref|ZP_07974454.1| ribosome-binding factor A [Synechococcus sp. CB0101]
Length = 136
Score = 40.0 bits (92), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 57/111 (51%), Gaps = 3/111 (2%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS 67
RR RV +R + +++N DR +S ++S++ V ++ DL+ +Y+S+ +
Sbjct: 3 QGRRVERVAALIRREVSELLVNGIKDDR-VSLGMVSVTNVEVAGDLQHCKIYVSVYGNPE 61
Query: 68 -PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ ++ L +++G +GR L N+R PE+ F D ++ + L+
Sbjct: 62 VQQQALAGLRSAASYVKGELGRRL-NMRRTPEVIFHLDRGIEKGTSVLGLL 111
>gi|91200790|emb|CAJ73843.1| similar to ribosome-binding factor A [Candidatus Kuenenia
stuttgartiensis]
Length = 125
Score = 40.0 bits (92), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 5/98 (5%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDV 66
+ RRA R+ E ++ + +IL RL I+++EV +S DL+ VY+S L ++
Sbjct: 2 SKRRAERLSEFIKQEVSKIILYKVKDPRL---SFITVTEVDISADLKNVKVYVSVLGNEL 58
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYD 104
+ L+ FI+ +G LR ++Y P L+F D
Sbjct: 59 ERKNTMCGLDHAKGFIQTELGSCLR-IKYTPHLKFCLD 95
>gi|225619655|ref|YP_002720912.1| ribosome-binding factor A [Brachyspira hyodysenteriae WA1]
gi|225214474|gb|ACN83208.1| ribosome-binding factor A [Brachyspira hyodysenteriae WA1]
Length = 101
Score = 40.0 bits (92), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 31 EFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSL 90
E +D I ++++I++V + DL+ A VY + + V++ LN I + + L
Sbjct: 3 EIEDPRIKNNLVTITKVDTAKDLKNAKVYFVCLREDKQNEVLNGLNSAKGVIFSYLKKQL 62
Query: 91 RNLRYVPELRFRYDTSL 107
+RYVP L F YD +L
Sbjct: 63 -TIRYVPNLTFHYDKNL 78
>gi|291546822|emb|CBL19930.1| ribosome-binding factor A [Ruminococcus sp. SR1/5]
Length = 122
Score = 40.0 bits (92), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 4/103 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLD 65
KNS + RV V+ L I+++E +D I + S++ V ++ DL+ YIS L
Sbjct: 3 KNSIKNTRVNGAVQKEL-STIIHSEIKDPRI-HPMTSVTAVEVAPDLKTCKAYISVLGEK 60
Query: 66 VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
+ D + L ++R + R L NLR PE+RF D S++
Sbjct: 61 QAKDSTLRGLKNAEGYVRRELARRL-NLRNTPEIRFVLDESIE 102
>gi|119470823|ref|ZP_01613434.1| ribosome-binding factor A, role in processing of 16S rRNA
[Alteromonadales bacterium TW-7]
gi|119446050|gb|EAW27329.1| ribosome-binding factor A, role in processing of 16S rRNA
[Alteromonadales bacterium TW-7]
Length = 148
Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 59/110 (53%), Gaps = 7/110 (6%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPD- 69
R RVG++++ + VIL E +D + ++++S V +S DL A ++I++ D
Sbjct: 6 RTDRVGQQIQKEI-AVILQREIKDPRLG--MVTVSAVEVSRDLSYAKIFITVFNTKDEDA 62
Query: 70 --RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ LN +IR +G+ +R R +PEL+F D SL +++ L+
Sbjct: 63 AKQSAKVLNEATGYIRSLLGKRIR-ARIMPELKFVVDNSLMEGMRISNLV 111
>gi|114562169|ref|YP_749682.1| ribosome-binding factor A [Shewanella frigidimarina NCIMB 400]
gi|122300516|sp|Q086H1|RBFA_SHEFN RecName: Full=Ribosome-binding factor A
gi|114333462|gb|ABI70844.1| ribosome-binding factor A [Shewanella frigidimarina NCIMB 400]
Length = 143
Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 60/114 (52%), Gaps = 6/114 (5%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
K R R+ ++++ L V L + +D I +++++V +S DL A VY++ +
Sbjct: 3 KEFSRTRRIAQQLQQELAMV-LQRDMKDPRIG--FVTVNDVDVSRDLSYAKVYVTFFEED 59
Query: 67 SP--DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ + I AL ++R + ++ LR +PELRF YD+SL +++ L+
Sbjct: 60 TELVQQKIDALTVAAPYVRTLVAGRMK-LRVMPELRFIYDSSLVEGMRMSNLVT 112
>gi|325981565|ref|YP_004293967.1| ribosome-binding factor A [Nitrosomonas sp. AL212]
gi|325531084|gb|ADZ25805.1| ribosome-binding factor A [Nitrosomonas sp. AL212]
Length = 127
Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 60/113 (53%), Gaps = 5/113 (4%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
PK+ R+LR+ ++++ L +I NE +D I + ++I+ V ++ D A ++ +
Sbjct: 2 PKDFSRSLRIADQIQRELADLI-QNEIKDPRIKQ--LTITAVEVTRDYSHAKIFYTTLTH 58
Query: 66 VSPDRVIS-ALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ +I L F+R + ++ LR VP+L F YD S++ +L+ L+
Sbjct: 59 QDENFLIEKGLEHATGFLRSNLSHRMK-LRLVPQLHFIYDESVERGVRLSKLI 110
>gi|254282436|ref|ZP_04957404.1| ribosome-binding factor A [gamma proteobacterium NOR51-B]
gi|219678639|gb|EED34988.1| ribosome-binding factor A [gamma proteobacterium NOR51-B]
Length = 134
Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 50/101 (49%), Gaps = 12/101 (11%)
Query: 17 EEVRSALMWVILNNEFQDRLISRDV-------ISISEVCMSVDLRVATVYIS-LPLDV-- 66
E RS + L E RLI ++V +S++ V ++ D A VY + L +D
Sbjct: 4 EFTRSQRVGDFLQQELA-RLIQQEVRDPRAHMVSVTGVDVTRDFAHAKVYYTQLGVDSRE 62
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSL 107
+ + LN F+R RI RS +R VP L+FR+D S+
Sbjct: 63 AAEETTQVLNGAAGFLRSRIARSA-TMRTVPRLQFRFDESV 102
>gi|154485023|ref|ZP_02027471.1| hypothetical protein EUBVEN_02741 [Eubacterium ventriosum ATCC
27560]
gi|149733976|gb|EDM50095.1| hypothetical protein EUBVEN_02741 [Eubacterium ventriosum ATCC
27560]
Length = 92
Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 41 VISISEVCMSVDLRVATVYIS-LPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPEL 99
+ S++ V ++ DL+ VYIS L + + ++ L FIR + R++ NLR PEL
Sbjct: 1 MTSVTGVEVTPDLKFCKVYISVLGDEEAKADTMAGLKSAAGFIRRELARTV-NLRNTPEL 59
Query: 100 RFRYDTSLQSYWKLNALM 117
+F D S++ K++ L+
Sbjct: 60 KFVMDQSIEYGMKMSKLI 77
>gi|332686764|ref|YP_004456538.1| ribosome-binding factor A [Melissococcus plutonius ATCC 35311]
gi|332370773|dbj|BAK21729.1| ribosome-binding factor A [Melissococcus plutonius ATCC 35311]
Length = 116
Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 57/109 (52%), Gaps = 6/109 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPD- 69
R RVG+E+ + IL + +D + I+I++V ++ DL+ AT+Y SL D++ D
Sbjct: 5 RDRRVGQEILHEIND-ILRKKIRDPRLQE--ITITDVRVTGDLQQATIYYSLLSDLASDQ 61
Query: 70 -RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+V L IR +G+ L L PEL F D S+Q ++ L+
Sbjct: 62 QKVQQGLEKAKGLIRRELGQRL-TLYKTPELFFEKDESVQYGNHVDKLL 109
>gi|163752372|ref|ZP_02159567.1| ribosome-binding factor A [Shewanella benthica KT99]
gi|161327744|gb|EDP98931.1| ribosome-binding factor A [Shewanella benthica KT99]
Length = 140
Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 61/118 (51%), Gaps = 12/118 (10%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K R R+G++++ L V L+ + +D + ++++++V +S DL A V+++
Sbjct: 2 AKEFSRTRRIGQQLQQELAQV-LHRDIKDPRVG--MVTVNDVEVSRDLSYAKVFVTF--- 55
Query: 66 VSPDRVI-----SALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
D I AL+ +IR + ++ LR +PELRF YD SL +++ L+
Sbjct: 56 FEEDEKIVAQKLEALSSAAGYIRSLVAGRMK-LRVMPELRFIYDASLVEGMRMSNLVT 112
>gi|85057849|ref|YP_456765.1| ribosome-binding factor A [Aster yellows witches'-broom phytoplasma
AYWB]
gi|84789954|gb|ABC65686.1| ribosome-binding factor A [Aster yellows witches'-broom phytoplasma
AYWB]
Length = 113
Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 50/92 (54%), Gaps = 11/92 (11%)
Query: 26 VILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVI-----SALNCNIK 80
V++N+ QD I I++++V ++ DL A VY ++ +S D + + N
Sbjct: 17 VLINDVIQDEQIG--YINLTDVKVTKDLSFANVYYTI---LSDDPAVLKLTEETIEQNKV 71
Query: 81 FIRGRIGRSLRNLRYVPELRFRYDTSLQSYWK 112
IR + + ++N R +P+L F+YD SL SY +
Sbjct: 72 VIRFELAKKIKNFRKIPDLVFKYDKSL-SYGR 102
>gi|212634075|ref|YP_002310600.1| ribosome-binding factor A [Shewanella piezotolerans WP3]
gi|226736651|sp|B8CKH4|RBFA_SHEPW RecName: Full=Ribosome-binding factor A
gi|212555559|gb|ACJ28013.1| Ribosome-binding factor A [Shewanella piezotolerans WP3]
Length = 142
Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 60/115 (52%), Gaps = 6/115 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K R R+ ++++ L V+L + +D I +++++V +S DL A V+++ +
Sbjct: 2 AKEFSRTRRIAQQLQQEL-AVVLQRDMKDPRIG--FVTVNDVDVSRDLSYAKVFVTFFEE 58
Query: 66 VSP--DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ AL+ +IR + ++ LR +PELRF YD+SL +++ L+
Sbjct: 59 DEKLVQEKVEALDAAAGYIRSLVAGRMK-LRVMPELRFIYDSSLVEGMRMSNLVS 112
>gi|294142059|ref|YP_003558037.1| ribosome-binding factor A [Shewanella violacea DSS12]
gi|293328528|dbj|BAJ03259.1| ribosome-binding factor A [Shewanella violacea DSS12]
Length = 140
Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 61/118 (51%), Gaps = 12/118 (10%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K R R+G++++ L V L+ + +D + ++++++V +S DL A V+++
Sbjct: 2 AKEFSRTRRIGQQLQQELAQV-LHRDIKDPRVG--MVTVNDVEVSRDLSYAKVFVTF--- 55
Query: 66 VSPDRVI-----SALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
D I AL+ +IR + ++ LR +PELRF YD SL +++ L+
Sbjct: 56 FEEDEKIVAVKLEALSSAAGYIRSLVAGRMK-LRVMPELRFIYDASLVEGMRMSNLVT 112
>gi|225572732|ref|ZP_03781487.1| hypothetical protein RUMHYD_00921 [Blautia hydrogenotrophica DSM
10507]
gi|225039905|gb|EEG50151.1| hypothetical protein RUMHYD_00921 [Blautia hydrogenotrophica DSM
10507]
Length = 126
Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 57/112 (50%), Gaps = 4/112 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLD 65
KNS + RV EV L +I NE +D I + S+ V ++ DL+ YIS L
Sbjct: 3 KNSIKNTRVNTEVLRELSNII-RNEIKDPRI-HPMTSVMAVEVAPDLKTCKAYISVLGNQ 60
Query: 66 VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ + + L ++R ++ R+L NLR PE+RF D S++ ++ L+
Sbjct: 61 EAQEETMVGLKSAESYVRRQLARNL-NLRNTPEIRFLLDQSIEYGVHMSKLI 111
>gi|329577089|gb|EGG58562.1| ribosome-binding factor A [Enterococcus faecalis TX1467]
Length = 116
Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 58/111 (52%), Gaps = 6/111 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPD- 69
R RVG+E+ + ILN +D + I+I++V ++ DL+ AT+Y SL D++ +
Sbjct: 5 RDRRVGQEIMREVND-ILNKRIRDPRVQ--GITITDVRVTGDLQQATIYYSLLSDLASEQ 61
Query: 70 -RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ L+ IR +G+ L L PEL F D S+Q ++ L+ L
Sbjct: 62 QKAQQGLDKAKGLIRKELGQRL-TLYKTPELIFERDESVQYGNHIDELIQL 111
>gi|163814222|ref|ZP_02205614.1| hypothetical protein COPEUT_00376 [Coprococcus eutactus ATCC 27759]
gi|158450671|gb|EDP27666.1| hypothetical protein COPEUT_00376 [Coprococcus eutactus ATCC 27759]
Length = 134
Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 54/103 (52%), Gaps = 4/103 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
KNS + R+ EV+ L +I + E +D IS + S+ +V ++ DL+ YIS+ D
Sbjct: 3 KNSVKNNRINGEVQRELSRII-SREIKDPRISP-MTSVVDVVVTPDLKFCKAYISVLGDQ 60
Query: 67 SP-DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
D + L + +IR + S+ NLR PE+ F D S++
Sbjct: 61 DAVDSTFAGLTSAMGYIRRELAHSV-NLRNTPEITFIMDQSIE 102
>gi|325921394|ref|ZP_08183251.1| ribosome-binding factor A [Xanthomonas gardneri ATCC 19865]
gi|325548152|gb|EGD19149.1| ribosome-binding factor A [Xanthomonas gardneri ATCC 19865]
Length = 130
Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 63/115 (54%), Gaps = 12/115 (10%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
K+ R RV +VR L I++ +D + +S+S+V ++ DL A V+++ +
Sbjct: 4 KSFHRTDRVSAQVRRDL-GTIVHAAVRDHGLPS--VSVSDVEVTRDLAHAKVFVTA---L 57
Query: 67 SPDRVISALNCNIKFIRGRI----GRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+R + A+ +K I G++ R+++ LR+VPEL F YD S+ +++ L+
Sbjct: 58 QQERSVEAVK-GLKEIAGQLRTQLARAMK-LRHVPELHFHYDDSVDRGERIDNLL 110
>gi|74316714|ref|YP_314454.1| ribosome-binding factor A [Thiobacillus denitrificans ATCC 25259]
gi|123612206|sp|Q3SKX2|RBFA_THIDA RecName: Full=Ribosome-binding factor A
gi|74056209|gb|AAZ96649.1| ribosome-binding factor A [Thiobacillus denitrificans ATCC 25259]
Length = 124
Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 59/113 (52%), Gaps = 5/113 (4%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPL 64
PK+ RA RV ++++ L +I E +D + +++I+EV ++ D+ A VY + +
Sbjct: 2 PKDFPRARRVADQIQRELPELI-RQEVKDPRVG--MLTITEVEVNRDMEFAKVYFTTMGG 58
Query: 65 DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ + L F+R ++ + LR VP+L F YD S++ L+ L+
Sbjct: 59 EAEHAACLQGLQRASGFLRSQLSHRM-QLRVVPKLTFVYDRSVEHGMALSRLI 110
>gi|296111955|ref|YP_003622337.1| ribosome-binding factor A [Leuconostoc kimchii IMSNU 11154]
gi|295833487|gb|ADG41368.1| ribosome-binding factor A [Leuconostoc kimchii IMSNU 11154]
Length = 117
Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 54/103 (52%), Gaps = 6/103 (5%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS 67
N +RA R+ +EV+ + ++L R+ I+I+ V +S DL++AT+Y S D++
Sbjct: 3 NPQRAGRLAQEVQRDVTDLLLKRINDPRVQD---ITITSVELSGDLQIATIYYSTLSDLA 59
Query: 68 P--DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
+ + L+ IR +G L + PEL+F D S+Q
Sbjct: 60 SVGQKAQAGLDAASGLIRKELGSRL-TVYKTPELKFVRDQSIQ 101
>gi|170076709|ref|YP_001733347.1| ribosome-binding factor A [Synechococcus sp. PCC 7002]
gi|238692796|sp|B1XLD1|RBFA_SYNP2 RecName: Full=Ribosome-binding factor A
gi|169884378|gb|ACA98091.1| ribosome-binding factor A [Synechococcus sp. PCC 7002]
Length = 131
Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 61/111 (54%), Gaps = 3/111 (2%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDV 66
NSRR +V ++ + +++ + DR + ++SI+EV +S DL+ A +++S+ +
Sbjct: 3 NSRRVSKVSSLIKREVSLMLMQDIKDDR-VGAGMVSITEVEVSGDLQHAKIFVSIYGSEE 61
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ + L + F+R +G+ +R LR PE+ F D SL+ ++ L+
Sbjct: 62 ARAETMEGLRASQGFVRRTLGQRIR-LRRSPEVLFIEDRSLEEGDRMIHLI 111
>gi|39938637|ref|NP_950403.1| ribosome-binding factor A [Onion yellows phytoplasma OY-M]
gi|39721746|dbj|BAD04236.1| ribosome-binding factor A [Onion yellows phytoplasma OY-M]
Length = 113
Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 50/92 (54%), Gaps = 11/92 (11%)
Query: 26 VILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVI-----SALNCNIK 80
V++N+ QD I I++++V ++ DL A VY ++ +S D + + N
Sbjct: 17 VLINDVIQDEQIG--YINLTDVKVTKDLSFANVYYTI---LSDDPTVLKLTEETIEQNKV 71
Query: 81 FIRGRIGRSLRNLRYVPELRFRYDTSLQSYWK 112
IR + + ++N R +P+L F+YD SL SY +
Sbjct: 72 VIRLELAKKIKNFRKIPDLVFKYDKSL-SYGR 102
>gi|78189422|ref|YP_379760.1| ribosome-binding factor A [Chlorobium chlorochromatii CaD3]
gi|123579528|sp|Q3AQK8|RBFA_CHLCH RecName: Full=Ribosome-binding factor A
gi|78171621|gb|ABB28717.1| ribosome-binding factor A [Chlorobium chlorochromatii CaD3]
Length = 123
Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 61/121 (50%), Gaps = 12/121 (9%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS---LPLD 65
SRR RV ++L+ L FQ L +++I EV ++VDL +A VYIS P +
Sbjct: 2 SRRTERV-----ASLLQHELGAIFQLELPRTPIVTIVEVKVTVDLGIARVYISTIGTPEE 56
Query: 66 VSPDRVISALNCNIKFIRGRIGRSLRN-LRYVPELRFRYDTSLQSYWKLNALMC-LPKIP 123
+ +++ L K+IR + + +R+ R +PEL F D + + L+ + K P
Sbjct: 57 QAA--IMAHLQEQNKYIRKLLSQRIRHQFRRIPELEFYEDHLYEHARHIEQLLSQVRKAP 114
Query: 124 V 124
V
Sbjct: 115 V 115
>gi|32307616|gb|AAP79213.1| ribosome-binding factor A [Bigelowiella natans]
Length = 198
Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 61/122 (50%), Gaps = 13/122 (10%)
Query: 10 RRALRVGEEVRSALMWVILNN---------EFQDRLI-SRDVISISEVCMSVDLRVATVY 59
RR RVG E++ + +++N+ ++ D I + + S++EV MS DL VA +Y
Sbjct: 65 RRIGRVGREIQREMGDLLVNDRNVLAAIDPKYDDDDIRNMTIASVTEVQMSRDLSVAKLY 124
Query: 60 I--SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ S S ++ LN +IR + + L NLR PEL F D +L ++ +M
Sbjct: 125 LMFSGGTKKSYQPILDRLNAKKGYIRRVVSQRL-NLRRSPELVFYEDNTLNEADEMKRIM 183
Query: 118 CL 119
+
Sbjct: 184 AV 185
>gi|167625058|ref|YP_001675352.1| ribosome-binding factor A [Shewanella halifaxensis HAW-EB4]
gi|189039560|sp|B0TQA1|RBFA_SHEHH RecName: Full=Ribosome-binding factor A
gi|167355080|gb|ABZ77693.1| ribosome-binding factor A [Shewanella halifaxensis HAW-EB4]
Length = 142
Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
Query: 42 ISISEVCMSVDLRVATVYISLPLDVSP--DRVISALNCNIKFIRGRIGRSLRNLRYVPEL 99
+++++V +S DL A VY++ + ++ ++AL+ +IR + ++ LR +PEL
Sbjct: 35 VTVNDVDVSRDLSYAKVYVTFFEEDEKLVEQKVAALDAAAGYIRSLVAGRMK-LRVMPEL 93
Query: 100 RFRYDTSLQSYWKLNALMC 118
RF YD+SL +++ L+
Sbjct: 94 RFIYDSSLVEGMRMSNLVS 112
>gi|157962877|ref|YP_001502911.1| ribosome-binding factor A [Shewanella pealeana ATCC 700345]
gi|189039561|sp|A8H739|RBFA_SHEPA RecName: Full=Ribosome-binding factor A
gi|157847877|gb|ABV88376.1| ribosome-binding factor A [Shewanella pealeana ATCC 700345]
Length = 142
Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
Query: 42 ISISEVCMSVDLRVATVYISLPLDVSP--DRVISALNCNIKFIRGRIGRSLRNLRYVPEL 99
+++++V +S DL A VY++ + ++ ++AL+ +IR + ++ LR +PEL
Sbjct: 35 VTVNDVDVSRDLSYAKVYVTFFEEDEKLVEQKVAALDAAAGYIRSLVAGRMK-LRVMPEL 93
Query: 100 RFRYDTSLQSYWKLNALMC 118
RF YD+SL +++ L+
Sbjct: 94 RFIYDSSLVEGMRMSNLVS 112
>gi|257784632|ref|YP_003179849.1| ribosome-binding factor A [Atopobium parvulum DSM 20469]
gi|257473139|gb|ACV51258.1| ribosome-binding factor A [Atopobium parvulum DSM 20469]
Length = 136
Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 57/118 (48%), Gaps = 12/118 (10%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
K ++ + R E R L W++L F+ +++I+ +SVD VY+S
Sbjct: 2 KQNQFSRRTNEVAREKLSWILL---FEISDPDLQLVTITSCEVSVDKSFMRVYVS----C 54
Query: 67 SPDR---VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKL-NALMCLP 120
PDR V++AL IR +G +L N R PEL F+ DT+ ++ AL +P
Sbjct: 55 EPDRYEKVLAALKRAKGRIRSLLGHAL-NWRVTPELDFKIDTTTDEAERIAQALEVVP 111
>gi|332291313|ref|YP_004429922.1| ribosome-binding factor A [Krokinobacter diaphorus 4H-3-7-5]
gi|332169399|gb|AEE18654.1| ribosome-binding factor A [Krokinobacter diaphorus 4H-3-7-5]
Length = 130
Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 48/84 (57%), Gaps = 3/84 (3%)
Query: 27 ILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDVSPDRVISALNCNIKFIRGR 85
+L N +D ++S+++V + DL +A VY+S+ P D + D ++ +N IR
Sbjct: 20 VLQNALRDSGKGGIIVSVTKVKVPTDLSIAKVYLSVFPNDKAAD-ILKEVNQVKPIIRHN 78
Query: 86 IGRSLRN-LRYVPELRFRYDTSLQ 108
I + R+ LR +PEL+F D +L+
Sbjct: 79 ISQRTRHQLRRMPELQFFIDDTLE 102
>gi|114046598|ref|YP_737148.1| ribosome-binding factor A [Shewanella sp. MR-7]
gi|123326767|sp|Q0HXR4|RBFA_SHESR RecName: Full=Ribosome-binding factor A
gi|113888040|gb|ABI42091.1| ribosome-binding factor A [Shewanella sp. MR-7]
Length = 146
Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 62/116 (53%), Gaps = 8/116 (6%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K R R+G++++ L V+L + +D I +++++V +S DL A V+++ +
Sbjct: 2 AKEFSRTRRIGQQLQQEL-AVVLQRDMKDPRIG--FVTVNDVDVSRDLSYAKVFVTF-FE 57
Query: 66 VSPDRVISALNCNIK---FIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ V LN I +IR + ++ LR +PE+RF YD+SL +++ L+
Sbjct: 58 EDKEVVQEKLNALIAAAPYIRTLVAGRMK-LRVMPEIRFVYDSSLVEGMRMSNLVS 112
>gi|154494028|ref|ZP_02033348.1| hypothetical protein PARMER_03373 [Parabacteroides merdae ATCC
43184]
gi|154086288|gb|EDN85333.1| hypothetical protein PARMER_03373 [Parabacteroides merdae ATCC
43184]
Length = 111
Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 3/79 (3%)
Query: 41 VISISEVCMSVDLRVATVYISL-PLDVSPDRVISALNCNIKFIRGRIGRSLR-NLRYVPE 98
+IS+S V +S DL VA Y+S+ P D S + ++ + N K IR +G+ +R +R +PE
Sbjct: 32 LISVSVVRVSPDLSVARAYLSIFPSDKSKE-MLENIRANTKAIRFDLGQRIRKQVRKIPE 90
Query: 99 LRFRYDTSLQSYWKLNALM 117
L F D SL ++ L+
Sbjct: 91 LTFFIDDSLDYIENIDNLL 109
>gi|150021374|ref|YP_001306728.1| ribosome-binding factor A [Thermosipho melanesiensis BI429]
gi|166199571|sp|A6LN42|RBFA_THEM4 RecName: Full=Ribosome-binding factor A
gi|149793895|gb|ABR31343.1| ribosome-binding factor A [Thermosipho melanesiensis BI429]
Length = 125
Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 42 ISISEVCMSVDLRVATVYISLPLDV-SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELR 100
I IS V +S D R A V++S D S R + L F R I ++LR + PELR
Sbjct: 37 IVISRVLVSKDKRFADVFVSYIGDADSRKRAVELLEKYKGFFRKYIAQNLR-IYTTPELR 95
Query: 101 FRYDTSLQSYWKLNALM 117
F+ D ++ ++N L+
Sbjct: 96 FKEDIGIEESIRINKLL 112
>gi|308050583|ref|YP_003914149.1| ribosome-binding factor A [Ferrimonas balearica DSM 9799]
gi|307632773|gb|ADN77075.1| ribosome-binding factor A [Ferrimonas balearica DSM 9799]
Length = 134
Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 62/111 (55%), Gaps = 8/111 (7%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
R RVG++++ L +I+ E +D + +++++EV +S D+ A V+++ LD +P+
Sbjct: 7 RTRRVGQQLQREL-AMIIQREIRDERLG--MVTVNEVEVSRDMGYAKVFVTF-LDDNPEA 62
Query: 71 VISALNCNIKF---IRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
V + ++ IR + S +R +PELRF YD SL ++ +L+
Sbjct: 63 VKRQMEALLELTPQIR-MLTASRVKMRVMPELRFTYDKSLVEGIRMASLVS 112
>gi|313156820|gb|EFR56260.1| ribosome-binding factor A [Alistipes sp. HGB5]
Length = 113
Score = 39.7 bits (91), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 43/70 (61%), Gaps = 3/70 (4%)
Query: 41 VISISEVCMSVDLRVATVYIS-LPLDVSPDRVISALNCNIKFIRGRIGRSLRN-LRYVPE 98
+++++ V +S D A +Y+S P S ++ L+ N KFIR +G+ +RN ++ VPE
Sbjct: 33 LVTVTAVRVSPDFGYAKIYVSVFPFGRSA-ALMQELDRNNKFIRHALGQRIRNQVKNVPE 91
Query: 99 LRFRYDTSLQ 108
++F D SL+
Sbjct: 92 IQFFLDDSLE 101
>gi|113969371|ref|YP_733164.1| ribosome-binding factor A [Shewanella sp. MR-4]
gi|122944045|sp|Q0HLG0|RBFA_SHESM RecName: Full=Ribosome-binding factor A
gi|113884055|gb|ABI38107.1| ribosome-binding factor A [Shewanella sp. MR-4]
Length = 146
Score = 39.7 bits (91), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 62/116 (53%), Gaps = 8/116 (6%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K R R+G++++ L V+L + +D I +++++V +S DL A V+++ +
Sbjct: 2 AKEFSRTRRIGQQLQQEL-AVVLQRDMKDPRIG--FVTVNDVDVSRDLSYAKVFVTF-FE 57
Query: 66 VSPDRVISALNCNIK---FIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ V LN I +IR + ++ LR +PE+RF YD+SL +++ L+
Sbjct: 58 EDKEVVQEKLNALIAAAPYIRTLVAGRMK-LRVMPEIRFVYDSSLVEGMRMSNLVS 112
>gi|325281252|ref|YP_004253794.1| Ribosome-binding factor A [Odoribacter splanchnicus DSM 20712]
gi|324313061|gb|ADY33614.1| Ribosome-binding factor A [Odoribacter splanchnicus DSM 20712]
Length = 111
Score = 39.7 bits (91), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 48/81 (59%), Gaps = 7/81 (8%)
Query: 41 VISISEVCMSVDLRVATVYISLPLDVSPDRVISAL---NCNIKFIRGR-IGRSLRNLRYV 96
++S++ V +S DL A +Y+S+ + V+ +L N +I+FI G+ +G+ +R V
Sbjct: 33 MLSVTAVRVSPDLSYAKIYVSIFPSERVEAVMKSLEEKNKSIRFILGKKVGK---QMRIV 89
Query: 97 PELRFRYDTSLQSYWKLNALM 117
PELRF D SL K++ L+
Sbjct: 90 PELRFFVDDSLDYIDKIDELL 110
>gi|255080072|ref|XP_002503616.1| predicted protein [Micromonas sp. RCC299]
gi|226518883|gb|ACO64874.1| predicted protein [Micromonas sp. RCC299]
Length = 252
Score = 39.3 bits (90), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 48/78 (61%), Gaps = 2/78 (2%)
Query: 41 VISISEVCMSVDLRVATVYISLPLDVSPDR-VISALNCNIKFIRGRIGRSLRNLRYVPEL 99
++++++V +S DL+V V++S+ D + I+ L ++R IG+ + +LR P++
Sbjct: 96 MVTVADVEVSGDLQVVKVFVSILGDERGKKNAINGLKKMEGYVRRNIGKRV-SLRLTPDI 154
Query: 100 RFRYDTSLQSYWKLNALM 117
RF YD S + ++++L+
Sbjct: 155 RFVYDDSFERGQRVSSLL 172
>gi|225010311|ref|ZP_03700783.1| ribosome-binding factor A [Flavobacteria bacterium MS024-3C]
gi|225005790|gb|EEG43740.1| ribosome-binding factor A [Flavobacteria bacterium MS024-3C]
Length = 131
Score = 39.3 bits (90), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 41 VISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRN-LRYVPEL 99
+IS+S+V ++ DL +A VY+S+ + ++ + N I+ + + RN LR +P+L
Sbjct: 35 LISVSKVTVTTDLSIAKVYLSIFPEDRAKEMLEGIQSNQPLIKHELAKRTRNQLRRMPQL 94
Query: 100 RFRYDTSL 107
F D +L
Sbjct: 95 LFFIDDTL 102
>gi|238916827|ref|YP_002930344.1| ribosome-binding factor A [Eubacterium eligens ATCC 27750]
gi|259551983|sp|C4Z5N8|RBFA_EUBE2 RecName: Full=Ribosome-binding factor A
gi|238872187|gb|ACR71897.1| ribosome-binding factor A [Eubacterium eligens ATCC 27750]
Length = 130
Score = 39.3 bits (90), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 59/112 (52%), Gaps = 4/112 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
KNS + R+ EV L +I +E +D I+ + S+ V ++ DL+ YIS+ D
Sbjct: 3 KNSVKNTRINGEVLKELSNII-RSEIKDPRIN-PMTSVVAVEVAPDLKTCKAYISVLGDE 60
Query: 67 SPDR-VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ I+ L +IR ++ R++ NLR PE+RF D S++ ++ L+
Sbjct: 61 KSQKDTITGLKSAEGYIRRQLARTV-NLRNTPEIRFILDQSIEYGINMSKLI 111
>gi|110639995|ref|YP_680205.1| ribosome-binding factor A [Cytophaga hutchinsonii ATCC 33406]
gi|123163145|sp|Q11P01|RBFA_CYTH3 RecName: Full=Ribosome-binding factor A
gi|110282676|gb|ABG60862.1| ribosome-binding factor A [Cytophaga hutchinsonii ATCC 33406]
Length = 133
Score = 39.3 bits (90), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 42 ISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLR-NLRYVPELR 100
ISI+ V MS DL VA +Y+S+ L + ++ + + K +R +G +R +R +PE+
Sbjct: 34 ISITVVRMSPDLSVAKLYLSIMLQEDKNAILKEIKVHTKELRKLLGERIRKQVRIIPEII 93
Query: 101 FRYDTSLQSYWKLNALMCLPKIP 123
F D ++ ++ ++ IP
Sbjct: 94 FYLDDNVDYANHMDDVLSKITIP 116
>gi|259503129|ref|ZP_05746031.1| ribosome-binding factor A [Lactobacillus antri DSM 16041]
gi|259168995|gb|EEW53490.1| ribosome-binding factor A [Lactobacillus antri DSM 16041]
Length = 119
Score = 39.3 bits (90), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 59/119 (49%), Gaps = 10/119 (8%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
M NK + R A ++ EV L+ + + Q ++I+ V ++ DL+ AT+Y
Sbjct: 1 MPNKQYRVDRLAQQIQREVDDILLKRVRDPRVQG-------VTITGVDVTGDLQQATIYY 53
Query: 61 SLPLDVSPD--RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
S+ D + D +V + L+ IR +G L N+ PE++F D S+ +++ L+
Sbjct: 54 SILSDKASDLEKVQAGLDKATGLIRSELGARL-NIFKTPEIKFERDKSVAYGSRIDQLI 111
>gi|119486756|ref|ZP_01620731.1| ribosome-binding factor A [Lyngbya sp. PCC 8106]
gi|119456049|gb|EAW37182.1| ribosome-binding factor A [Lyngbya sp. PCC 8106]
Length = 142
Score = 39.3 bits (90), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 58/109 (53%), Gaps = 3/109 (2%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDVSP 68
RR RV ++ + ++L E +D + ++SI++V ++ DL+ +++S+ + +
Sbjct: 5 RRVSRVAALIKREVSQILLQ-EVKDDRVGSGMVSITDVNVAGDLQHVKIFVSIYGTEEAR 63
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ L +IR +G+ +R LR PE+ F D SL+ K+ +L+
Sbjct: 64 KETMEGLRAATGYIRSSLGQRVR-LRRTPEVLFLEDRSLERGDKMLSLL 111
>gi|332884608|gb|EGK04865.1| ribosome-binding factor A [Dysgonomonas mossii DSM 22836]
Length = 118
Score = 39.3 bits (90), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 41 VISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSL-RNLRYVPEL 99
++++S V ++ DL +A VY+S+ ++ + N+K IR +G+ + + LR +PEL
Sbjct: 32 LVTVSTVRVTPDLGLAKVYLSIFPSEKGKELLENIRTNVKSIRFDLGQKVGKQLRVIPEL 91
Query: 100 RFRYDTSLQSYWKLNALM 117
F D SL ++ L+
Sbjct: 92 AFYLDDSLDYLENIDRLL 109
>gi|67922611|ref|ZP_00516117.1| Ribosome-binding factor A [Crocosphaera watsonii WH 8501]
gi|67855539|gb|EAM50792.1| Ribosome-binding factor A [Crocosphaera watsonii WH 8501]
Length = 147
Score = 39.3 bits (90), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 60/117 (51%), Gaps = 3/117 (2%)
Query: 2 KNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS 61
K N NSRR RV ++ + ++L + DR+ S ++S++ V +S DL+ A +++S
Sbjct: 15 KGANMANSRRVSRVSSLIKREISQMLLFDIKDDRVGS-GMVSVTNVYVSGDLQHAKIFVS 73
Query: 62 L-PLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ + + + L + ++R + +R LR PE+ F D ++ K+ L+
Sbjct: 74 IYGTEEAKIETMEGLKSSEGYVRKELAHRIR-LRRAPEVTFFEDHGIERGDKMLHLL 129
>gi|227529110|ref|ZP_03959159.1| ribosome-binding factor A [Lactobacillus vaginalis ATCC 49540]
gi|227350954|gb|EEJ41245.1| ribosome-binding factor A [Lactobacillus vaginalis ATCC 49540]
Length = 121
Score = 39.3 bits (90), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 58/119 (48%), Gaps = 10/119 (8%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
M NK + R A + EV L+ + + Q ++I+ V ++ DL+ AT+Y
Sbjct: 1 MPNKQYRVDRLAQEIQREVDDILLKRVRDPRVQG-------VTITGVDVTGDLQQATIYY 53
Query: 61 SLPLDVSPD--RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
S+ D + D +V + L+ IR +G L N+ PE++F D S+ +++ L+
Sbjct: 54 SILSDKASDMEKVQAGLDKATGLIRSELGARL-NIFKTPEIKFERDKSIAYGSRIDQLI 111
>gi|307299145|ref|ZP_07578946.1| ribosome-binding factor A [Thermotogales bacterium mesG1.Ag.4.2]
gi|306914941|gb|EFN45327.1| ribosome-binding factor A [Thermotogales bacterium mesG1.Ag.4.2]
Length = 123
Score = 38.9 bits (89), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 46/79 (58%), Gaps = 4/79 (5%)
Query: 41 VISISEVCMSVDLRVATVYISL--PLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPE 98
++SI V ++ D R ATV++SL P D S +++ LN + R I +++R L PE
Sbjct: 34 MVSIVRVELTKDKRFATVFVSLMGP-DESKKKLVKRLNEDKGIFRTAIAKNIR-LFKAPE 91
Query: 99 LRFRYDTSLQSYWKLNALM 117
+RF+ D +++ ++ L+
Sbjct: 92 IRFKEDIGIEASLRVAQLL 110
>gi|257869196|ref|ZP_05648849.1| ribosome-binding factor A [Enterococcus gallinarum EG2]
gi|257803360|gb|EEV32182.1| ribosome-binding factor A [Enterococcus gallinarum EG2]
Length = 120
Score = 38.9 bits (89), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 61/115 (53%), Gaps = 10/115 (8%)
Query: 5 NPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL 64
N ++ R A + +EV L + + QD ++I++V ++ DL+ AT++ S
Sbjct: 3 NYRDRRVAQEILKEVNQILRKKVRDPRVQD-------VTITDVRVTGDLQQATIFYSTLS 55
Query: 65 DVSPD--RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
D++ + + + L +R +G++L +L VPEL+F D S+Q K++ ++
Sbjct: 56 DLASEKQKAQAGLEKATGLVRRELGQAL-SLYKVPELQFELDESVQYGNKIDEMI 109
>gi|86131462|ref|ZP_01050060.1| Ribosome-binding factor A [Dokdonia donghaensis MED134]
gi|85817907|gb|EAQ39075.1| Ribosome-binding factor A [Dokdonia donghaensis MED134]
Length = 130
Score = 38.9 bits (89), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 27 ILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRI 86
+L N +D ++S+++V + DL +A VY+S+ + ++ +N IR I
Sbjct: 20 VLQNALRDSGQGGIIVSVTKVKVPTDLSIAKVYLSIFPNDKATEILKEVNQVKPIIRHNI 79
Query: 87 GRSLRN-LRYVPELRFRYDTSLQ 108
+ R+ LR +PEL+F D +L+
Sbjct: 80 SQRTRHQLRRMPELQFYIDDTLE 102
>gi|77359944|ref|YP_339519.1| ribosome-binding factor A, role in processing of 16S rRNA
[Pseudoalteromonas haloplanktis TAC125]
gi|123588866|sp|Q3IJ52|RBFA_PSEHT RecName: Full=Ribosome-binding factor A
gi|76874855|emb|CAI86076.1| ribosome-binding factor A, role in processing of 16S rRNA
[Pseudoalteromonas haloplanktis TAC125]
Length = 166
Score = 38.9 bits (89), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 60/110 (54%), Gaps = 7/110 (6%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL---PLDVS 67
R RV ++++ + VIL E +D + ++++S V +S DL A ++I++ D +
Sbjct: 6 RTDRVAQQIQKEI-AVILQREIKDPRLG--MVTVSAVEVSRDLSYAKIFITVFNTQDDNA 62
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ + LN +IR +G+ +R R +PEL+F D SL +++ L+
Sbjct: 63 AKQSANVLNEATGYIRSLLGKRIR-ARIMPELKFLVDNSLMEGMRISNLV 111
>gi|255535783|ref|YP_003096154.1| Ribosome-binding factor A [Flavobacteriaceae bacterium 3519-10]
gi|255341979|gb|ACU08092.1| Ribosome-binding factor A [Flavobacteriaceae bacterium 3519-10]
Length = 120
Score = 38.9 bits (89), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 41 VISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSL-RNLRYVPEL 99
++++S+V ++ DL +A VY+S+ V+ + N R IG+ + + +R +P++
Sbjct: 34 LVTVSDVKITADLSIAKVYLSIFPPAVRAAVMKEIEQNTSAYRNFIGQKMGKQVRIIPDV 93
Query: 100 RFRYDTSLQSYWKL 113
+F DT+L K+
Sbjct: 94 KFYLDTTLDDVEKI 107
>gi|313206040|ref|YP_004045217.1| ribosome-binding factor a [Riemerella anatipestifer DSM 15868]
gi|312445356|gb|ADQ81711.1| ribosome-binding factor A [Riemerella anatipestifer DSM 15868]
gi|315022353|gb|EFT35381.1| Ribosome-binding factor A [Riemerella anatipestifer RA-YM]
gi|325336519|gb|ADZ12793.1| ribosome-binding factor A [Riemerella anatipestifer RA-GD]
Length = 119
Score = 38.9 bits (89), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 41 VISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSL-RNLRYVPEL 99
+IS+S+V ++ DL +A +Y+S+ + ++ + N R IG + + +R +P+L
Sbjct: 33 LISVSDVKVTADLGIAKIYLSIFPQNYREAIMKEIEANKSQYRHFIGNKMAKQVRVIPQL 92
Query: 100 RFRYDTSL 107
F DTSL
Sbjct: 93 SFYLDTSL 100
>gi|241760044|ref|ZP_04758142.1| ribosome-binding factor A [Neisseria flavescens SK114]
gi|261364591|ref|ZP_05977474.1| ribosome-binding factor A [Neisseria mucosa ATCC 25996]
gi|261381125|ref|ZP_05985698.1| ribosome-binding factor A [Neisseria subflava NJ9703]
gi|319637963|ref|ZP_07992729.1| ribosome-binding factor A [Neisseria mucosa C102]
gi|241319498|gb|EER55928.1| ribosome-binding factor A [Neisseria flavescens SK114]
gi|284795927|gb|EFC51274.1| ribosome-binding factor A [Neisseria subflava NJ9703]
gi|288567175|gb|EFC88735.1| ribosome-binding factor A [Neisseria mucosa ATCC 25996]
gi|317401118|gb|EFV81773.1| ribosome-binding factor A [Neisseria mucosa C102]
Length = 123
Score = 38.9 bits (89), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 42 ISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRF 101
I+I+EV ++ D ATV+ ++ D + D AL +R + + ++ + PEL F
Sbjct: 38 ITINEVEVTRDYSHATVFYTVLDDSTRDITEEALEHAKGHLRSELAKRIKLFK-TPELHF 96
Query: 102 RYDTSLQSYWKLNALM 117
+YD SL+ +++L+
Sbjct: 97 KYDESLERGMSISSLI 112
>gi|298368699|ref|ZP_06980017.1| ribosome-binding factor A [Neisseria sp. oral taxon 014 str. F0314]
gi|298282702|gb|EFI24189.1| ribosome-binding factor A [Neisseria sp. oral taxon 014 str. F0314]
Length = 123
Score = 38.9 bits (89), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 42 ISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRF 101
I+I+EV ++ D ATV+ ++ D + D AL +R + + ++ + PEL F
Sbjct: 38 ITINEVEVTRDYSHATVFYTVLDDSTRDITEEALEHAKGHLRSELAKRIKLFK-TPELHF 96
Query: 102 RYDTSLQSYWKLNALM 117
+YD SL+ +++L+
Sbjct: 97 KYDESLERGMSISSLI 112
>gi|255066483|ref|ZP_05318338.1| ribosome-binding factor A [Neisseria sicca ATCC 29256]
gi|255049363|gb|EET44827.1| ribosome-binding factor A [Neisseria sicca ATCC 29256]
Length = 123
Score = 38.9 bits (89), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 42 ISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRF 101
I+I+EV ++ D ATV+ ++ D + D AL +R + + ++ + PEL F
Sbjct: 38 ITINEVEVTRDYSHATVFYTVLDDSTRDITEEALEHAKGHLRSELAKRIKLFK-TPELHF 96
Query: 102 RYDTSLQSYWKLNALM 117
+YD SL+ +++L+
Sbjct: 97 KYDESLERGMSISSLI 112
>gi|29375844|ref|NP_814998.1| ribosome-binding factor A [Enterococcus faecalis V583]
gi|227518535|ref|ZP_03948584.1| ribosome-binding factor A [Enterococcus faecalis TX0104]
gi|227553061|ref|ZP_03983110.1| ribosome-binding factor A [Enterococcus faecalis HH22]
gi|229546048|ref|ZP_04434773.1| ribosome-binding factor A [Enterococcus faecalis TX1322]
gi|255976053|ref|ZP_05426639.1| ribosome-binding factor A [Enterococcus faecalis T2]
gi|256618854|ref|ZP_05475700.1| ribosome-binding factor A [Enterococcus faecalis ATCC 4200]
gi|256762272|ref|ZP_05502852.1| ribosome-binding factor A [Enterococcus faecalis T3]
gi|256852917|ref|ZP_05558287.1| ribosome-binding factor A [Enterococcus faecalis T8]
gi|256958763|ref|ZP_05562934.1| ribosome-binding factor A [Enterococcus faecalis DS5]
gi|256962131|ref|ZP_05566302.1| ribosome-binding factor A [Enterococcus faecalis Merz96]
gi|256965330|ref|ZP_05569501.1| ribosome-binding factor A [Enterococcus faecalis HIP11704]
gi|257078792|ref|ZP_05573153.1| ribosome-binding factor A [Enterococcus faecalis JH1]
gi|257082764|ref|ZP_05577125.1| ribosome-binding factor A [Enterococcus faecalis E1Sol]
gi|257085465|ref|ZP_05579826.1| ribosome-binding factor A [Enterococcus faecalis Fly1]
gi|257086622|ref|ZP_05580983.1| ribosome-binding factor A [Enterococcus faecalis D6]
gi|257089679|ref|ZP_05584040.1| ribosome-binding factor A [Enterococcus faecalis CH188]
gi|257415893|ref|ZP_05592887.1| ribosome-binding factor A [Enterococcus faecalis AR01/DG]
gi|257419095|ref|ZP_05596089.1| ribosome-binding factor A [Enterococcus faecalis T11]
gi|293383156|ref|ZP_06629073.1| ribosome-binding factor A [Enterococcus faecalis R712]
gi|293387690|ref|ZP_06632235.1| ribosome-binding factor A [Enterococcus faecalis S613]
gi|294780125|ref|ZP_06745498.1| ribosome-binding factor A [Enterococcus faecalis PC1.1]
gi|300860107|ref|ZP_07106195.1| ribosome-binding factor A [Enterococcus faecalis TUSoD Ef11]
gi|307268544|ref|ZP_07549917.1| ribosome-binding factor A [Enterococcus faecalis TX4248]
gi|307273437|ref|ZP_07554682.1| ribosome-binding factor A [Enterococcus faecalis TX0855]
gi|307277600|ref|ZP_07558692.1| ribosome-binding factor A [Enterococcus faecalis TX2134]
gi|307279090|ref|ZP_07560148.1| ribosome-binding factor A [Enterococcus faecalis TX0860]
gi|307291256|ref|ZP_07571140.1| ribosome-binding factor A [Enterococcus faecalis TX0411]
gi|312899336|ref|ZP_07758669.1| ribosome-binding factor A [Enterococcus faecalis TX0470]
gi|312904025|ref|ZP_07763193.1| ribosome-binding factor A [Enterococcus faecalis TX0635]
gi|312907255|ref|ZP_07766246.1| ribosome-binding factor A [Enterococcus faecalis DAPTO 512]
gi|312909873|ref|ZP_07768721.1| ribosome-binding factor A [Enterococcus faecalis DAPTO 516]
gi|312952272|ref|ZP_07771147.1| ribosome-binding factor A [Enterococcus faecalis TX0102]
gi|34098453|sp|Q835U7|RBFA_ENTFA RecName: Full=Ribosome-binding factor A
gi|29343306|gb|AAO81068.1| ribosome-binding factor A [Enterococcus faecalis V583]
gi|227074017|gb|EEI11980.1| ribosome-binding factor A [Enterococcus faecalis TX0104]
gi|227177804|gb|EEI58776.1| ribosome-binding factor A [Enterococcus faecalis HH22]
gi|229308821|gb|EEN74808.1| ribosome-binding factor A [Enterococcus faecalis TX1322]
gi|255968925|gb|EET99547.1| ribosome-binding factor A [Enterococcus faecalis T2]
gi|256598381|gb|EEU17557.1| ribosome-binding factor A [Enterococcus faecalis ATCC 4200]
gi|256683523|gb|EEU23218.1| ribosome-binding factor A [Enterococcus faecalis T3]
gi|256711376|gb|EEU26414.1| ribosome-binding factor A [Enterococcus faecalis T8]
gi|256949259|gb|EEU65891.1| ribosome-binding factor A [Enterococcus faecalis DS5]
gi|256952627|gb|EEU69259.1| ribosome-binding factor A [Enterococcus faecalis Merz96]
gi|256955826|gb|EEU72458.1| ribosome-binding factor A [Enterococcus faecalis HIP11704]
gi|256986822|gb|EEU74124.1| ribosome-binding factor A [Enterococcus faecalis JH1]
gi|256990794|gb|EEU78096.1| ribosome-binding factor A [Enterococcus faecalis E1Sol]
gi|256993495|gb|EEU80797.1| ribosome-binding factor A [Enterococcus faecalis Fly1]
gi|256994652|gb|EEU81954.1| ribosome-binding factor A [Enterococcus faecalis D6]
gi|256998491|gb|EEU85011.1| ribosome-binding factor A [Enterococcus faecalis CH188]
gi|257157721|gb|EEU87681.1| ribosome-binding factor A [Enterococcus faecalis ARO1/DG]
gi|257160923|gb|EEU90883.1| ribosome-binding factor A [Enterococcus faecalis T11]
gi|291079495|gb|EFE16859.1| ribosome-binding factor A [Enterococcus faecalis R712]
gi|291082879|gb|EFE19842.1| ribosome-binding factor A [Enterococcus faecalis S613]
gi|294452800|gb|EFG21229.1| ribosome-binding factor A [Enterococcus faecalis PC1.1]
gi|295112814|emb|CBL31451.1| ribosome-binding factor A [Enterococcus sp. 7L76]
gi|300850925|gb|EFK78674.1| ribosome-binding factor A [Enterococcus faecalis TUSoD Ef11]
gi|306497487|gb|EFM67020.1| ribosome-binding factor A [Enterococcus faecalis TX0411]
gi|306504215|gb|EFM73427.1| ribosome-binding factor A [Enterococcus faecalis TX0860]
gi|306505865|gb|EFM75043.1| ribosome-binding factor A [Enterococcus faecalis TX2134]
gi|306509964|gb|EFM78989.1| ribosome-binding factor A [Enterococcus faecalis TX0855]
gi|306515140|gb|EFM83682.1| ribosome-binding factor A [Enterococcus faecalis TX4248]
gi|310626283|gb|EFQ09566.1| ribosome-binding factor A [Enterococcus faecalis DAPTO 512]
gi|310629656|gb|EFQ12939.1| ribosome-binding factor A [Enterococcus faecalis TX0102]
gi|310632501|gb|EFQ15784.1| ribosome-binding factor A [Enterococcus faecalis TX0635]
gi|311289831|gb|EFQ68387.1| ribosome-binding factor A [Enterococcus faecalis DAPTO 516]
gi|311293487|gb|EFQ72043.1| ribosome-binding factor A [Enterococcus faecalis TX0470]
gi|315027489|gb|EFT39421.1| ribosome-binding factor A [Enterococcus faecalis TX2137]
gi|315030932|gb|EFT42864.1| ribosome-binding factor A [Enterococcus faecalis TX4000]
gi|315034088|gb|EFT46020.1| ribosome-binding factor A [Enterococcus faecalis TX0017]
gi|315036756|gb|EFT48688.1| ribosome-binding factor A [Enterococcus faecalis TX0027]
gi|315145582|gb|EFT89598.1| ribosome-binding factor A [Enterococcus faecalis TX2141]
gi|315147755|gb|EFT91771.1| ribosome-binding factor A [Enterococcus faecalis TX4244]
gi|315151456|gb|EFT95472.1| ribosome-binding factor A [Enterococcus faecalis TX0012]
gi|315153235|gb|EFT97251.1| ribosome-binding factor A [Enterococcus faecalis TX0031]
gi|315160332|gb|EFU04349.1| ribosome-binding factor A [Enterococcus faecalis TX0645]
gi|315166755|gb|EFU10772.1| ribosome-binding factor A [Enterococcus faecalis TX1341]
gi|315169954|gb|EFU13971.1| ribosome-binding factor A [Enterococcus faecalis TX1342]
gi|315174362|gb|EFU18379.1| ribosome-binding factor A [Enterococcus faecalis TX1346]
gi|315575670|gb|EFU87861.1| ribosome-binding factor A [Enterococcus faecalis TX0309B]
gi|315578372|gb|EFU90563.1| ribosome-binding factor A [Enterococcus faecalis TX0630]
gi|315579886|gb|EFU92077.1| ribosome-binding factor A [Enterococcus faecalis TX0309A]
gi|323480506|gb|ADX79945.1| ribosome-binding factor A [Enterococcus faecalis 62]
gi|327534897|gb|AEA93731.1| ribosome-binding factor A [Enterococcus faecalis OG1RF]
Length = 116
Score = 38.9 bits (89), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 57/109 (52%), Gaps = 6/109 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPD- 69
R RVG+E+ + ILN +D + I+I++V ++ DL+ AT+Y SL D++ +
Sbjct: 5 RDRRVGQEIMREVND-ILNKRIRDPRVQ--GITITDVRVTGDLQQATIYYSLLSDLASEQ 61
Query: 70 -RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ L+ IR +G+ L L PEL F D S+Q ++ L+
Sbjct: 62 QKAQQGLDKAKGLIRKELGQRL-TLYKTPELIFERDESVQYGNHIDELI 109
>gi|319937391|ref|ZP_08011798.1| ribosome-binding factor A [Coprobacillus sp. 29_1]
gi|319807757|gb|EFW04350.1| ribosome-binding factor A [Coprobacillus sp. 29_1]
Length = 114
Score = 38.9 bits (89), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 50/94 (53%), Gaps = 4/94 (4%)
Query: 24 MWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIR 83
+ IL E +D I +I+ V + DL ++ +Y+S L+ + + + AL + FIR
Sbjct: 16 LSTILQTEVKDPSIG--FCTITGVDTTADLSISKIYVSF-LNKNTKKSMEALERSKGFIR 72
Query: 84 GRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ + L +R PEL F DTSL+ K++ ++
Sbjct: 73 SLLAKRL-TIRKCPELHFVLDTSLEYGNKIDNII 105
>gi|268316869|ref|YP_003290588.1| ribosome-binding factor A [Rhodothermus marinus DSM 4252]
gi|262334403|gb|ACY48200.1| ribosome-binding factor A [Rhodothermus marinus DSM 4252]
Length = 126
Score = 38.5 bits (88), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 62/115 (53%), Gaps = 9/115 (7%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS 67
+S R RVG ++ L IL EF D+L + ++++V + DL +A VY+S+ +
Sbjct: 3 SSIRVQRVGSLLKRELAD-ILQFEFGDQLPP--MTTVTDVQPTRDLSIAKVYVSI--YGT 57
Query: 68 PDRVISA---LNCNIKFIRGRIGRSLR-NLRYVPELRFRYDTSLQSYWKLNALMC 118
P++ +A L IR + + +R LR++PELRF D +L+ ++ L+
Sbjct: 58 PEQKRAAFRRLQELTPQIRAALAQRIRYQLRFMPELRFVLDETLERAQRVEELLA 112
>gi|323692924|ref|ZP_08107146.1| ribosome-binding factor A [Clostridium symbiosum WAL-14673]
gi|323503007|gb|EGB18847.1| ribosome-binding factor A [Clostridium symbiosum WAL-14673]
Length = 139
Score = 38.5 bits (88), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 52/103 (50%), Gaps = 4/103 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLD 65
KNS + R+ EV+ L +I + E +D I + ++ V ++ DL+ YIS L +
Sbjct: 3 KNSIKNTRINSEVQKELSEII-SRELKDPRI-HPMTTVVSVEVTPDLKFCKAYISVLGSE 60
Query: 66 VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
+ + L FIR ++ + + NLR PEL F D S++
Sbjct: 61 EAGKDTVQGLKSAASFIRTQLAKRI-NLRNTPELSFILDQSIE 102
>gi|323485576|ref|ZP_08090920.1| hypothetical protein HMPREF9474_02671 [Clostridium symbiosum
WAL-14163]
gi|323401094|gb|EGA93448.1| hypothetical protein HMPREF9474_02671 [Clostridium symbiosum
WAL-14163]
Length = 139
Score = 38.5 bits (88), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 52/103 (50%), Gaps = 4/103 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLD 65
KNS + R+ EV+ L +I + E +D I + ++ V ++ DL+ YIS L +
Sbjct: 3 KNSIKNTRINSEVQKELSEII-SRELKDPRI-HPMTTVVSVEVTPDLKFCKAYISVLGSE 60
Query: 66 VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
+ + L FIR ++ + + NLR PEL F D S++
Sbjct: 61 EAGKDTVQGLKSAASFIRTQLAKRI-NLRNTPELSFILDQSIE 102
>gi|71908069|ref|YP_285656.1| ribosome-binding factor A [Dechloromonas aromatica RCB]
gi|123627144|sp|Q47D95|RBFA_DECAR RecName: Full=Ribosome-binding factor A
gi|71847690|gb|AAZ47186.1| ribosome-binding factor A [Dechloromonas aromatica RCB]
Length = 123
Score = 38.5 bits (88), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 57/111 (51%), Gaps = 4/111 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
K +R+ RV E+VR L +I E +D + +IS++ V ++ D A V+ +
Sbjct: 4 KGFQRSDRVAEQVRRDLADLI-RTELKDPRVG--MISLTAVELTPDYAHAKVFFATLNSE 60
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ V L F+R +G+ + ++ +PEL F YD+S++ L+ L+
Sbjct: 61 HLEEVERGLKRAAGFLRRELGKRI-HIHTLPELHFVYDSSIERGASLSLLI 110
>gi|303256977|ref|ZP_07342991.1| ribosome-binding factor A [Burkholderiales bacterium 1_1_47]
gi|302860468|gb|EFL83545.1| ribosome-binding factor A [Burkholderiales bacterium 1_1_47]
Length = 124
Score = 38.5 bits (88), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 56/112 (50%), Gaps = 5/112 (4%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
P RA R+ ++++ + +I + +I+++ ++ D AT+Y + +
Sbjct: 4 PTKPGRANRIADQIQRDVAELIQKEVSNPKT---GLITLTGCEITPDYAHATIYFT-SIG 59
Query: 66 VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+P+ ALN + RI + L+ + VP+L F YD S++ ++++ L+
Sbjct: 60 STPEEATEALNSAAPMLHSRIFKLLK-IHTVPQLHFVYDKSVERGFEMDQLI 110
>gi|313199848|ref|YP_004038506.1| ribosome-binding factor a [Methylovorus sp. MP688]
gi|312439164|gb|ADQ83270.1| ribosome-binding factor A [Methylovorus sp. MP688]
Length = 123
Score = 38.5 bits (88), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 60/111 (54%), Gaps = 6/111 (5%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
K R+ RV E+++ L +L E +D + +++++EV +S DL A V+ S
Sbjct: 3 KEFSRSDRVAEQMQRELAD-LLQFEVKDPRVG--MVTVTEVEVSGDLAHAKVFYSAEKG- 58
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+P+ + L F+R ++ + L LR VP+L F YD S+ + K++ L+
Sbjct: 59 TPE-LQKGLEKTAGFLRSQLAKRLL-LRTVPQLHFVYDASIDNGMKISRLI 107
>gi|332975272|gb|EGK12172.1| ribosome-binding factor A [Kingella kingae ATCC 23330]
Length = 123
Score = 38.5 bits (88), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 6/78 (7%)
Query: 42 ISISEVCMSVDLRVATVYISLPLDVSPDRVIS--ALNCNIKFIRGRIGRSLRNLRYVPEL 99
I+I++V ++ D ATVY ++ +S DR S AL F+R + R + R PEL
Sbjct: 39 ITINDVEVTRDYSHATVYYTV---LSGDREASLQALEHAKGFLRSELSRRITVFR-TPEL 94
Query: 100 RFRYDTSLQSYWKLNALM 117
F YD SL+ +L+ L+
Sbjct: 95 HFEYDESLERGVQLSNLI 112
>gi|331082954|ref|ZP_08332074.1| ribosome-binding factor A [Lachnospiraceae bacterium 6_1_63FAA]
gi|330399949|gb|EGG79607.1| ribosome-binding factor A [Lachnospiraceae bacterium 6_1_63FAA]
Length = 128
Score = 38.5 bits (88), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 54/103 (52%), Gaps = 4/103 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLD 65
KNS + RV EV+ L +I R+ + S++ V ++ DL+ YIS + +
Sbjct: 3 KNSIKNTRVNAEVQHELANLIREGIKDPRI--HPMTSVTAVEVAPDLKTCRAYISVMGNE 60
Query: 66 VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
+ + I+ L +IR ++ +++ NLR PE+RF D S++
Sbjct: 61 EAKNNTIAGLKSAEGYIRRQLAKNI-NLRNTPEIRFILDESIE 102
>gi|218258188|ref|ZP_03474590.1| hypothetical protein PRABACTJOHN_00244 [Parabacteroides johnsonii
DSM 18315]
gi|218225683|gb|EEC98333.1| hypothetical protein PRABACTJOHN_00244 [Parabacteroides johnsonii
DSM 18315]
Length = 111
Score = 38.5 bits (88), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 41 VISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLR-NLRYVPEL 99
+IS+S V +S DL VA Y+S+ ++ + N K IR +G+ +R +R +PEL
Sbjct: 32 LISVSVVRVSPDLSVARAYLSIFPSEKSKEMLENIRANTKAIRFDLGQRIRQQVRKIPEL 91
Query: 100 RFRYDTSLQSYWKLNALM 117
F D SL ++ L+
Sbjct: 92 TFFIDDSLDYIENIDNLL 109
>gi|325266651|ref|ZP_08133328.1| ribosome-binding factor A [Kingella denitrificans ATCC 33394]
gi|324982094|gb|EGC17729.1| ribosome-binding factor A [Kingella denitrificans ATCC 33394]
Length = 123
Score = 38.5 bits (88), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 42 ISISEVCMSVDLRVATVYISLPLDVSPDRVISA--LNCNIKFIRGRIGRSLRNLRYVPEL 99
I+I++V +S D ATVY ++ ++ DR SA L F+R + R + R PEL
Sbjct: 39 ITINDVEVSRDYSHATVYYTV---LNGDRAASAQALEKAKGFLRSELSRRITVFR-TPEL 94
Query: 100 RFRYDTSLQSYWKLNALM 117
F YD SL+ L+ L+
Sbjct: 95 HFEYDESLERGVNLSQLI 112
>gi|254556870|ref|YP_003063287.1| ribosome-binding factor A [Lactobacillus plantarum JDM1]
gi|300768183|ref|ZP_07078088.1| ribosome-binding factor A [Lactobacillus plantarum subsp. plantarum
ATCC 14917]
gi|308180811|ref|YP_003924939.1| ribosome-binding factor A [Lactobacillus plantarum subsp. plantarum
ST-III]
gi|254045797|gb|ACT62590.1| ribosome-binding factor A [Lactobacillus plantarum JDM1]
gi|300494247|gb|EFK29410.1| ribosome-binding factor A [Lactobacillus plantarum subsp. plantarum
ATCC 14917]
gi|308046302|gb|ADN98845.1| ribosome-binding factor A [Lactobacillus plantarum subsp. plantarum
ST-III]
Length = 117
Score = 38.1 bits (87), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
Query: 42 ISISEVCMSVDLRVATVYISLPLDVSPD--RVISALNCNIKFIRGRIGRSLRNLRYVPEL 99
++I+ V ++ DL+ AT+Y S+ D + D + + L IR +G L ++ PEL
Sbjct: 34 VTITGVTVTGDLQQATIYYSILSDKASDGEKTAAGLTKATGLIRSELGSRL-SIYKTPEL 92
Query: 100 RFRYDTSLQSYWKLNALM 117
F D S+Q +++ L+
Sbjct: 93 TFERDNSVQYGSRIDELI 110
>gi|299469794|emb|CBN76648.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 269
Score = 38.1 bits (87), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 44/78 (56%), Gaps = 4/78 (5%)
Query: 42 ISISEVCMSVDLRVATVYISLPLDVSPDRVISALNC--NIKFIRGRIGRSLRNLRYVPEL 99
I++ +V MS DLR A V+IS+ DV R A C N K IR + L+ ++ VPEL
Sbjct: 123 IAVVDVDMSPDLRSAKVFISVYGDVLEKREAYAW-CVKNTKAIRMALCAELKGMKRVPEL 181
Query: 100 RFRYDTSLQSYWKLNALM 117
F+ DT + + L AL+
Sbjct: 182 FFK-DTDISAAVDLMALI 198
>gi|256847052|ref|ZP_05552498.1| ribosome-binding factor A [Lactobacillus coleohominis 101-4-CHN]
gi|256715716|gb|EEU30691.1| ribosome-binding factor A [Lactobacillus coleohominis 101-4-CHN]
Length = 120
Score = 38.1 bits (87), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 57/119 (47%), Gaps = 10/119 (8%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
M NK + R A + EV L+ + + QD I+++ V ++ DL+ AT+Y
Sbjct: 1 MPNKRYRPERLAQEIQREVDDILLKRVRDPRVQD-------ITVTGVDVTGDLQQATIYY 53
Query: 61 SLPLDVSPD--RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
SL D + D + + L+ IR +G L N+ P ++F D S+ +++ L+
Sbjct: 54 SLLSDKASDGEKAQAGLDKATGLIRKELGARL-NIFKTPAIKFERDPSIAYGNRIDELL 111
>gi|319787426|ref|YP_004146901.1| ribosome-binding factor A [Pseudoxanthomonas suwonensis 11-1]
gi|317465938|gb|ADV27670.1| ribosome-binding factor A [Pseudoxanthomonas suwonensis 11-1]
Length = 120
Score = 38.1 bits (87), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 55/111 (49%), Gaps = 4/111 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
K+ R RV ++R L ++ + L S +S+S+V ++ DL A V+++ +
Sbjct: 4 KSFHRTDRVSAQLRRELGTLVHEAVREHGLPS---VSVSDVEVTRDLAHAKVFVTALMPE 60
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ AL +R + R ++ +R+VPEL F YD S+ ++ L+
Sbjct: 61 RSTEAVKALKELAYQLRMELARRVK-MRHVPELHFHYDDSVDRGERIETLL 110
>gi|123967667|ref|YP_001008525.1| ribosome-binding factor A [Prochlorococcus marinus str. AS9601]
gi|166219390|sp|A2BNQ7|RBFA_PROMS RecName: Full=Ribosome-binding factor A
gi|123197777|gb|ABM69418.1| Ribosome-binding factor A [Prochlorococcus marinus str. AS9601]
Length = 130
Score = 38.1 bits (87), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 51/95 (53%), Gaps = 5/95 (5%)
Query: 17 EEVRSAL---MWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI-SLPLDVSPDRVI 72
E+V S L + +IL N+ ++ LI ++IS++ +S DL+ +YI S + ++
Sbjct: 8 EKVSSLLKKEITLILQNDLENDLIRDHFVNISKIDLSGDLQHCKIYITSTAQEKVRTEIV 67
Query: 73 SALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSL 107
LN IR +G+ + +R VPE+ F+ D L
Sbjct: 68 ENLNTAKSSIRHSLGKRIE-MRRVPEIIFKDDVVL 101
>gi|254516616|ref|ZP_05128675.1| ribosome-binding factor A [gamma proteobacterium NOR5-3]
gi|219675039|gb|EED31406.1| ribosome-binding factor A [gamma proteobacterium NOR5-3]
Length = 157
Score = 38.1 bits (87), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 59/115 (51%), Gaps = 7/115 (6%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PL 64
K R RVG+ +R L +I E +D + ++SI+ V +S D+ A V+ +L
Sbjct: 2 AKEFSRTERVGDYLRRELALII-QREVRDPRLG--MVSITAVDVSRDISHARVHFTLLGC 58
Query: 65 DVSPDRVISA--LNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
D + + S LN F+R + R ++R VP+LRF +D+S+ L AL+
Sbjct: 59 DTAEEAKPSTDVLNKAAGFLRSALARDA-SMRSVPKLRFVFDSSIGRGRDLEALI 112
>gi|153814917|ref|ZP_01967585.1| hypothetical protein RUMTOR_01132 [Ruminococcus torques ATCC 27756]
gi|317500429|ref|ZP_07958653.1| ribosome-binding factor A [Lachnospiraceae bacterium 8_1_57FAA]
gi|331089564|ref|ZP_08338463.1| ribosome-binding factor A [Lachnospiraceae bacterium 3_1_46FAA]
gi|145847948|gb|EDK24866.1| hypothetical protein RUMTOR_01132 [Ruminococcus torques ATCC 27756]
gi|316898184|gb|EFV20231.1| ribosome-binding factor A [Lachnospiraceae bacterium 8_1_57FAA]
gi|330404932|gb|EGG84470.1| ribosome-binding factor A [Lachnospiraceae bacterium 3_1_46FAA]
Length = 127
Score = 38.1 bits (87), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 52/103 (50%), Gaps = 4/103 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
KNS + RV EV+ L IL +D +S + S+ V ++ DL+ YIS+ D
Sbjct: 3 KNSIKNTRVNAEVQRELSN-ILRGGIKDPRVS-PMTSVVAVEVAPDLKTCKAYISVLGDE 60
Query: 67 SPDR-VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
+ I L FIR + R++ N+R PE++F D S++
Sbjct: 61 KAQQDTIKGLQSAEGFIRRELARTI-NMRNTPEIKFIVDQSIE 102
>gi|160898432|ref|YP_001564014.1| ribosome-binding factor A [Delftia acidovorans SPH-1]
gi|238687223|sp|A9C1Z3|RBFA_DELAS RecName: Full=Ribosome-binding factor A
gi|160364016|gb|ABX35629.1| ribosome-binding factor A [Delftia acidovorans SPH-1]
Length = 123
Score = 38.1 bits (87), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 56/118 (47%), Gaps = 5/118 (4%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
M + R+ +V ++++ L +I E +D + ++++ V ++ D A VY
Sbjct: 1 MATRKSAAPNRSFKVSDQIQRDLAELIAR-ELKDPRVG--MVTLQSVEVTPDYAHAKVYF 57
Query: 61 SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
SL L P ALN F+R + + L ++ VP L F YD + + +NAL+
Sbjct: 58 SL-LVGDPQATQEALNQAAGFLRNGLFKRL-HIHTVPTLHFIYDRTSERAADMNALIA 113
>gi|330999165|ref|ZP_08322884.1| ribosome-binding factor A [Parasutterella excrementihominis YIT
11859]
gi|329575365|gb|EGG56909.1| ribosome-binding factor A [Parasutterella excrementihominis YIT
11859]
Length = 124
Score = 38.1 bits (87), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 24/112 (21%), Positives = 56/112 (50%), Gaps = 5/112 (4%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
P RA R+ ++++ + +I + +++++ ++ D AT+Y + +
Sbjct: 4 PTKPGRANRIADQIQRDVAELIQKEVSNPKT---GLVTLTGCEITPDYAHATIYFT-SIG 59
Query: 66 VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+P+ ALN + RI + L+ + VP+L F YD S++ ++++ L+
Sbjct: 60 STPEEATEALNSAAPMLHSRIFKLLK-IHTVPQLHFVYDKSVERGFEMDQLI 110
>gi|163848558|ref|YP_001636602.1| ribosome-binding factor A [Chloroflexus aurantiacus J-10-fl]
gi|222526493|ref|YP_002570964.1| ribosome-binding factor A [Chloroflexus sp. Y-400-fl]
gi|182676538|sp|A9WGP7|RBFA_CHLAA RecName: Full=Ribosome-binding factor A
gi|254789741|sp|B9LBJ3|RBFA_CHLSY RecName: Full=Ribosome-binding factor A
gi|163669847|gb|ABY36213.1| ribosome-binding factor A [Chloroflexus aurantiacus J-10-fl]
gi|222450372|gb|ACM54638.1| ribosome-binding factor A [Chloroflexus sp. Y-400-fl]
Length = 127
Score = 38.1 bits (87), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 7/91 (7%)
Query: 27 ILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR---VISALNCNIKFIR 83
++ E +D + +++ V +S DL+ A V IS+ SP+ ++AL F+R
Sbjct: 20 VIQKELKDPRVG--FATVTGVEVSADLQHAKVRISVM--GSPEEREAAMAALQRARGFLR 75
Query: 84 GRIGRSLRNLRYVPELRFRYDTSLQSYWKLN 114
R+ + +R+VPEL DTSL ++
Sbjct: 76 KRVAEEMSYMRFVPELHLIQDTSLDYTMHMD 106
>gi|88705686|ref|ZP_01103396.1| Ribosome-binding factor A [Congregibacter litoralis KT71]
gi|88700199|gb|EAQ97308.1| Ribosome-binding factor A [Congregibacter litoralis KT71]
Length = 145
Score = 37.7 bits (86), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 57/114 (50%), Gaps = 7/114 (6%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
K R RVG+ +R L +I E +D + ++SI+ V +S D+ A V+ +L
Sbjct: 3 KEFSRTERVGDYLRRELALII-QREVRDPRLG--MVSITAVDVSRDISHARVHFTLLGSD 59
Query: 67 SPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ + LN F+R + R ++R VP+LRF +D+S+ L AL+
Sbjct: 60 TAEEAKPCTDVLNNAAGFLRSALARDA-SMRSVPKLRFVFDSSVGRGRDLEALI 112
>gi|32473743|ref|NP_866737.1| ribosome-binding factor A [Rhodopirellula baltica SH 1]
gi|39931771|sp|Q7URR1|RBFA_RHOBA RecName: Full=Ribosome-binding factor A
gi|32444279|emb|CAD74277.1| probable ribosome-binding factor A [Rhodopirellula baltica SH 1]
gi|327542472|gb|EGF28951.1| ribosome-binding factor A [Rhodopirellula baltica WH47]
Length = 137
Score = 37.7 bits (86), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 58/112 (51%), Gaps = 5/112 (4%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS 67
+SRR L+ E +R + I+ E +D + RDV I V +S D+R A V +S+ D +
Sbjct: 2 SSRRLLKAAEAIREVVANAIVT-EVRDPRV-RDVTVIG-VEVSPDMREAKVKVSVMGDET 58
Query: 68 PDRV-ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ + L + F++ +I + + RY P+LRF D ++ ++ ++
Sbjct: 59 QKNLSLRGLQNSAGFLQSKIANRM-DTRYTPKLRFEVDRGQENAMTVSEILA 109
>gi|53804605|ref|YP_113776.1| ribosome-binding factor A [Methylococcus capsulatus str. Bath]
gi|61214821|sp|Q609C1|RBFA_METCA RecName: Full=Ribosome-binding factor A
gi|53758366|gb|AAU92657.1| ribosome-binding factor A [Methylococcus capsulatus str. Bath]
Length = 119
Score = 37.7 bits (86), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 45/78 (57%), Gaps = 2/78 (2%)
Query: 41 VISISEVCMSVDLRVATVYIS-LPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPEL 99
++++S+V +S DL VA V+++ L + + L +R +GR +R +R +PE+
Sbjct: 34 MVTVSDVDVSRDLAVAKVFVTFLGARLETRAAVKRLGEFAPQLRQVLGRRMR-MRIIPEI 92
Query: 100 RFRYDTSLQSYWKLNALM 117
RF YD SL+ ++ ++
Sbjct: 93 RFAYDDSLERGLHMDEVL 110
>gi|262037350|ref|ZP_06010815.1| ribosome-binding factor A [Leptotrichia goodfellowii F0264]
gi|261748607|gb|EEY35981.1| ribosome-binding factor A [Leptotrichia goodfellowii F0264]
Length = 120
Score = 37.7 bits (86), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 63/113 (55%), Gaps = 6/113 (5%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS---LPL 64
N RR + +E+ S ++ + L E ++ I ++++SI +V ++ D R + S L
Sbjct: 2 NDRRKKGLEKEI-SRIVGITLLTEIKNEKI-KNLVSIHKVELTKDGRYLDLTFSILDLKN 59
Query: 65 DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+V+ ++++ L F R IG L ++R+VPE+R D S++ K+++++
Sbjct: 60 NVNKEKIVEDLEKLKGFFRKTIGSQL-SVRFVPEIRIHIDDSVEYGVKISSIL 111
>gi|253997784|ref|YP_003049847.1| ribosome-binding factor A [Methylovorus sp. SIP3-4]
gi|253984463|gb|ACT49320.1| ribosome-binding factor A [Methylovorus sp. SIP3-4]
Length = 123
Score = 37.7 bits (86), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 60/111 (54%), Gaps = 6/111 (5%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
K R+ R+ E+++ L +L E +D + +++++EV +S DL A V+ S
Sbjct: 3 KEFSRSDRIAEQMQRELAD-LLQFEVKDPRVG--MVTVTEVEVSGDLAHAKVFYSAEKG- 58
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+P+ + L F+R ++ + L LR VP+L F YD S+ + K++ L+
Sbjct: 59 TPE-LQKGLEKTAGFLRSQLAKRLL-LRTVPQLHFVYDASIDNGMKISRLI 107
>gi|126695467|ref|YP_001090353.1| ribosome-binding factor A [Prochlorococcus marinus str. MIT 9301]
gi|166219386|sp|A3PAH7|RBFA_PROM0 RecName: Full=Ribosome-binding factor A
gi|126542510|gb|ABO16752.1| Ribosome-binding factor A [Prochlorococcus marinus str. MIT 9301]
Length = 130
Score = 37.7 bits (86), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 24 MWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI-SLPLDVSPDRVISALNCNIKFI 82
+ +IL N+ ++ LI ++IS++ +S DL+ +YI S + ++ LN I
Sbjct: 18 ITLILQNDLENDLIRDHFVNISKIDLSGDLQHCKIYITSTAEEKVRKEIVENLNTAKSSI 77
Query: 83 RGRIGRSLRNLRYVPELRFRYDTSL 107
R +G+ + +R VPE+ F+ D L
Sbjct: 78 RHSLGKRIE-MRRVPEIIFKDDVVL 101
>gi|154249099|ref|YP_001409924.1| ribosome-binding factor A [Fervidobacterium nodosum Rt17-B1]
gi|171769324|sp|A7HK34|RBFA_FERNB RecName: Full=Ribosome-binding factor A
gi|154153035|gb|ABS60267.1| ribosome-binding factor A [Fervidobacterium nodosum Rt17-B1]
Length = 125
Score = 37.7 bits (86), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 55/103 (53%), Gaps = 6/103 (5%)
Query: 18 EVRSALMWVILNNEFQDRLIS--RDVISISEVCMSVDLRVATVYISLPLDVSPDR-VISA 74
E+R L ++ E +D I + +I+IS V +S D R A VY+S+ D + + V++
Sbjct: 13 EIRKVLSEALM--EMKDPNIDPMKSLITISRVEVSKDKRYADVYVSVLGDEAKRKDVVNY 70
Query: 75 LNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ R + +++R + PELRF+ D +++ ++ L+
Sbjct: 71 FEQKKGYFRTYVAKNIR-MYTAPELRFKEDKGIEATVRIGQLL 112
>gi|313885308|ref|ZP_07819059.1| ribosome-binding factor A [Eremococcus coleocola ACS-139-V-Col8]
gi|312619414|gb|EFR30852.1| ribosome-binding factor A [Eremococcus coleocola ACS-139-V-Col8]
Length = 116
Score = 37.7 bits (86), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 44/78 (56%), Gaps = 3/78 (3%)
Query: 42 ISISEVCMSVDLRVATVYISLPLDVSPDR--VISALNCNIKFIRGRIGRSLRNLRYVPEL 99
++I++V ++ DL+ AT+Y S D++ R + L +R +G+ L+ + PE+
Sbjct: 33 VTITDVDLTGDLQHATIYYSTLSDLAGQRQKQQAGLEAVTGKVRSELGKRLK-IYKTPEI 91
Query: 100 RFRYDTSLQSYWKLNALM 117
RF D S+ K+++L+
Sbjct: 92 RFERDASVDYGNKIDSLL 109
>gi|270285158|ref|ZP_06194552.1| ribosome-binding factor A [Chlamydia muridarum Nigg]
gi|270289178|ref|ZP_06195480.1| ribosome-binding factor A [Chlamydia muridarum Weiss]
gi|301336553|ref|ZP_07224755.1| ribosome-binding factor A [Chlamydia muridarum MopnTet14]
Length = 121
Score = 37.7 bits (86), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 49/84 (58%), Gaps = 3/84 (3%)
Query: 19 VRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPDRVISALNC 77
+R ++ VIL + ++ +R I+I+ V +S DL+ A VY+S +P + S + ++AL
Sbjct: 2 LRESIAKVILKDVKHPKISNR-WITITRVSLSRDLQSARVYVSIMPHENSQEETLAALKA 60
Query: 78 NIKFIRGRIGRSLRNLRYVPELRF 101
+ FI + + + L+Y P+L F
Sbjct: 61 SAGFIACQASKDVV-LKYFPDLNF 83
>gi|225374834|ref|ZP_03752055.1| hypothetical protein ROSEINA2194_00455 [Roseburia inulinivorans DSM
16841]
gi|225213295|gb|EEG95649.1| hypothetical protein ROSEINA2194_00455 [Roseburia inulinivorans DSM
16841]
Length = 124
Score = 37.7 bits (86), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 57/112 (50%), Gaps = 4/112 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLD 65
KNS + R+ EV+ L +I E +D I+ + S+ V ++ DL+ YIS L +
Sbjct: 3 KNSIKNTRINGEVQKELSNII-RGEIKDPRINP-LTSVVAVEVAPDLKTCKAYISVLGDE 60
Query: 66 VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
S I L +IR + +S+ NLR P++ F D S++ K++ ++
Sbjct: 61 KSQQDTIKGLKSAEGYIRTMLAKSI-NLRNTPQITFILDQSIEYGVKMSKMI 111
>gi|315126159|ref|YP_004068162.1| ribosome-binding factor A, role in processing of 16S rRNA
[Pseudoalteromonas sp. SM9913]
gi|315014673|gb|ADT68011.1| ribosome-binding factor A, role in processing of 16S rRNA
[Pseudoalteromonas sp. SM9913]
Length = 135
Score = 37.7 bits (86), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 59/110 (53%), Gaps = 7/110 (6%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL---PLDVS 67
R RV ++++ + VIL E +D + ++++S V +S DL A V+I++ + +
Sbjct: 6 RTDRVAQQIQKEI-AVILQREIKDPRLG--MVTVSAVEVSRDLSYAKVFITVFNTEDENA 62
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ LN +IR +G+ +R R +PEL+F D SL +++ L+
Sbjct: 63 AKQSAKVLNEATGYIRSLLGKRIR-ARIMPELKFVVDNSLMEGMRISNLV 111
>gi|330813315|ref|YP_004357554.1| translation initiation factor 2 [Candidatus Pelagibacter sp.
IMCC9063]
gi|327486410|gb|AEA80815.1| translation initiation factor 2 [Candidatus Pelagibacter sp.
IMCC9063]
Length = 125
Score = 37.7 bits (86), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 53/100 (53%), Gaps = 3/100 (3%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
++R L+ GE ++ + + + ++ IS I+I+EV +S DLR A VY +PL
Sbjct: 11 TQRQLKAGENLKKIIANIFIKDQIVLPDISTRNITITEVRVSPDLRHAIVYF-IPLSGDK 69
Query: 69 DRV-ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSL 107
+ LN ++ R+ +S + +++P+LRF D S
Sbjct: 70 SEIAFKTLNQFSYEVKKRV-KSSWSAKFLPDLRFVLDKSF 108
>gi|284044676|ref|YP_003395016.1| ribosome-binding factor A [Conexibacter woesei DSM 14684]
gi|283948897|gb|ADB51641.1| ribosome-binding factor A [Conexibacter woesei DSM 14684]
Length = 121
Score = 37.7 bits (86), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 53/105 (50%), Gaps = 5/105 (4%)
Query: 14 RVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP-DRVI 72
RV E VR+ L I + +D + ++++ V S DLR A VY+S+ D +
Sbjct: 3 RVDEAVRAVLSDAI-TQDLKDPRVG--FVTVTAVRTSSDLRHARVYVSVLGDEETRAECL 59
Query: 73 SALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ L +++ + R +R ++Y PE+ F YD S+ ++ ++
Sbjct: 60 AGLRSATGYLQRLVAREVR-MKYTPEIVFAYDDSIDRGMRITEIL 103
>gi|229550238|ref|ZP_04438963.1| ribosome-binding factor A [Enterococcus faecalis ATCC 29200]
gi|255973014|ref|ZP_05423600.1| ribosome-binding factor A [Enterococcus faecalis T1]
gi|257422837|ref|ZP_05599827.1| ribosome-binding factor A [Enterococcus faecalis X98]
gi|229304676|gb|EEN70672.1| ribosome-binding factor A [Enterococcus faecalis ATCC 29200]
gi|255964032|gb|EET96508.1| ribosome-binding factor A [Enterococcus faecalis T1]
gi|257164661|gb|EEU94621.1| ribosome-binding factor A [Enterococcus faecalis X98]
gi|315155986|gb|EFU00003.1| ribosome-binding factor A [Enterococcus faecalis TX0043]
gi|315157842|gb|EFU01859.1| ribosome-binding factor A [Enterococcus faecalis TX0312]
Length = 116
Score = 37.7 bits (86), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 59/113 (52%), Gaps = 14/113 (12%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRD----VISISEVCMSVDLRVATVYISLPLDV 66
R RVG+E+ + N+F ++ I RD I+I++V ++ DL+ AT+Y SL D+
Sbjct: 5 RDRRVGQEIMREV------NDFLNKRI-RDPRVQGITITDVRVTGDLQQATIYYSLLSDL 57
Query: 67 SPD--RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ + + L+ IR +G+ L L PEL F D S+Q ++ L+
Sbjct: 58 ASEQQKAQQGLDKAKGLIRKELGQRL-TLYKTPELIFERDESVQYGNHIDELI 109
>gi|15639875|ref|NP_219325.1| ribosome-binding factor A (rbfA) [Treponema pallidum subsp.
pallidum str. Nichols]
gi|189026113|ref|YP_001933885.1| ribosome-binding factor A [Treponema pallidum subsp. pallidum SS14]
gi|6093904|sp|O83860|RBFA_TREPA RecName: Full=Ribosome-binding factor A
gi|238689350|sp|B2S4C7|RBFA_TREPS RecName: Full=Ribosome-binding factor A
gi|3323207|gb|AAC26580.1| ribosome-binding factor A (rbfA) [Treponema pallidum subsp.
pallidum str. Nichols]
gi|189018688|gb|ACD71306.1| ribosome-binding factor A [Treponema pallidum subsp. pallidum SS14]
gi|291060249|gb|ADD72984.1| ribosome-binding factor A [Treponema pallidum subsp. pallidum str.
Chicago]
Length = 126
Score = 37.4 bits (85), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 54/105 (51%), Gaps = 3/105 (2%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD-VSPD 69
R ++GE +R+ + +I+ + +D +S +S++ V +S + A VY+S +
Sbjct: 8 RVRKLGEHIRAEIAQLIMLGKIKDPRVS-PFLSVNWVDVSGGMVCARVYVSSFMGKYKTK 66
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLN 114
+ + L FIR + + LR LR P L F YD S++ + L+
Sbjct: 67 QGVQGLESAAGFIRSVLAKKLR-LRQCPRLSFVYDESVRDGFSLS 110
>gi|257126081|ref|YP_003164195.1| ribosome-binding factor A [Leptotrichia buccalis C-1013-b]
gi|257050020|gb|ACV39204.1| ribosome-binding factor A [Leptotrichia buccalis C-1013-b]
Length = 122
Score = 37.4 bits (85), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 60/113 (53%), Gaps = 6/113 (5%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS---LPL 64
N RR + +E+ + +L D++ ++++SI +V ++ D R + S L
Sbjct: 2 NDRRKKGLEKEISRIVGMTLLTEVKNDKI--KNLVSIHKVELTKDGRYLDLTFSILDLKD 59
Query: 65 DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+V+ +++ LN F R +IG L ++R+VPE+R D S++ K+ +++
Sbjct: 60 NVNREKIAEDLNKLKGFFRKQIGSQL-SIRFVPEVRIHLDDSVEYGVKIASIL 111
>gi|307288425|ref|ZP_07568413.1| ribosome-binding factor A [Enterococcus faecalis TX0109]
gi|306500596|gb|EFM69925.1| ribosome-binding factor A [Enterococcus faecalis TX0109]
gi|315165489|gb|EFU09506.1| ribosome-binding factor A [Enterococcus faecalis TX1302]
Length = 116
Score = 37.4 bits (85), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 57/109 (52%), Gaps = 6/109 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPD- 69
R R+G+E+ + ILN +D + I+I++V ++ DL+ AT+Y SL D++ +
Sbjct: 5 RDRRLGQEIMREVND-ILNKRIRDPRVQ--GITITDVRVTGDLQQATIYYSLLSDLASEQ 61
Query: 70 -RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ L+ IR +G+ L L PEL F D S+Q ++ L+
Sbjct: 62 QKAQQGLDKAKGLIRKELGQRL-TLYKTPELIFERDESVQYGNHIDELI 109
>gi|157376520|ref|YP_001475120.1| ribosome-binding factor A [Shewanella sediminis HAW-EB3]
gi|189039562|sp|A8FYR9|RBFA_SHESH RecName: Full=Ribosome-binding factor A
gi|157318894|gb|ABV37992.1| ribosome-binding factor A [Shewanella sediminis HAW-EB3]
Length = 143
Score = 37.4 bits (85), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 44/79 (55%), Gaps = 3/79 (3%)
Query: 42 ISISEVCMSVDLRVATVYISLPLDVSP--DRVISALNCNIKFIRGRIGRSLRNLRYVPEL 99
+++++V +S DL A VY++ + + AL+ +IR + ++ LR +PEL
Sbjct: 35 VTVNDVDVSRDLSYAKVYVTFFEEDEKLVQEKVEALDAAAGYIRSLVAGRMK-LRVMPEL 93
Query: 100 RFRYDTSLQSYWKLNALMC 118
RF YD+SL +++ L+
Sbjct: 94 RFIYDSSLVEGMRMSNLVS 112
>gi|225027051|ref|ZP_03716243.1| hypothetical protein EUBHAL_01307 [Eubacterium hallii DSM 3353]
gi|224955515|gb|EEG36724.1| hypothetical protein EUBHAL_01307 [Eubacterium hallii DSM 3353]
Length = 128
Score = 37.4 bits (85), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 54/103 (52%), Gaps = 4/103 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD- 65
KNS + R+ EV L +I + E +D I+ + S+ V ++ DL+ YIS+ D
Sbjct: 3 KNSVKNTRINSEVLKELSRII-SREIKDPRIA-PMTSVVSVEVAPDLKTCKAYISVLGDK 60
Query: 66 VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
+ + + L +IR + RS+ NLR P++RF D S++
Sbjct: 61 EAQESTLEGLRSAHGYIRRELARSI-NLRNTPDVRFILDQSIE 102
>gi|312869024|ref|ZP_07729201.1| ribosome-binding factor A [Lactobacillus oris PB013-T2-3]
gi|311095450|gb|EFQ53717.1| ribosome-binding factor A [Lactobacillus oris PB013-T2-3]
Length = 119
Score = 37.4 bits (85), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 59/119 (49%), Gaps = 10/119 (8%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
M NK + R A ++ EV L+ + + Q ++I+ V ++ DL+ AT+Y
Sbjct: 1 MPNKQYRVDRLAQQIQREVDDILLKRVRDPRVQG-------VTITGVDVTGDLQQATIYY 53
Query: 61 SLPLDVSP--DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
S+ D + ++V + L+ IR +G L N+ PE++F D S+ +++ L+
Sbjct: 54 SILSDKASEMEKVQAGLDKATGLIRSELGARL-NIFKTPEIKFERDKSVAYGSRIDQLI 111
>gi|154506280|ref|ZP_02043018.1| hypothetical protein RUMGNA_03822 [Ruminococcus gnavus ATCC 29149]
gi|153793419|gb|EDN75839.1| hypothetical protein RUMGNA_03822 [Ruminococcus gnavus ATCC 29149]
Length = 123
Score = 37.4 bits (85), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 54/103 (52%), Gaps = 4/103 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
KNS + R+ EV+ L IL +D ++ + S+ V ++ DL+ YIS+ D
Sbjct: 3 KNSIKNTRINTEVQRELSN-ILRGGIKDPRVA-PMTSVVAVEVAPDLKTCKAYISVLGDK 60
Query: 67 -SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
+ + I+ L +IR + R++ N+R PE+RF D S++
Sbjct: 61 KAQEDTITGLQSAEGYIRRELARTI-NMRNTPEIRFIMDQSIE 102
>gi|317968062|ref|ZP_07969452.1| ribosome-binding factor A [Synechococcus sp. CB0205]
Length = 136
Score = 37.4 bits (85), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 55/111 (49%), Gaps = 3/111 (2%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS 67
RR RV +R + +++ +D +S ++SI+ V ++ DL+ +++S+
Sbjct: 3 QGRRVERVAALIRREVSELLVTG-IKDERVSLGMVSITNVDVAGDLQHCKIFVSVYGSAE 61
Query: 68 -PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ + L +++G +GR L N+R PE+ F+ D ++ + L+
Sbjct: 62 VQQQALEGLRSASNYVKGELGRRL-NMRRTPEVIFQLDRGIEKGTSVLGLL 111
>gi|110833191|ref|YP_692050.1| ribosome-binding factor A [Alcanivorax borkumensis SK2]
gi|122959683|sp|Q0VSS0|RBFA_ALCBS RecName: Full=Ribosome-binding factor A
gi|110646302|emb|CAL15778.1| ribosome-binding factor A [Alcanivorax borkumensis SK2]
Length = 137
Score = 37.0 bits (84), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 58/118 (49%), Gaps = 6/118 (5%)
Query: 2 KNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS 61
+++ P+ R RV ++++ L +L E +D + ++ +I +V +S DL A VY +
Sbjct: 3 RHRRPQGFNRTDRVADQIQRELSR-LLQFEMKDPRV--NLATIQDVTVSRDLSYAEVYFT 59
Query: 62 L--PLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
L + + L F+R + + L N R P+LRF YD + + L+ L+
Sbjct: 60 LLGQGEEAGAEAEEVLTKASGFLRSSLAQGL-NTRTTPKLRFHYDMTPERAAHLSQLI 116
>gi|284006669|emb|CBA71931.1| ribosome-binding factor A [Arsenophonus nasoniae]
Length = 104
Score = 37.0 bits (84), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 11/85 (12%)
Query: 43 SISEVCMSVDLRVATVYISLPLDVSPDR--------VISALNCNI-KFIRGRIGRSLRNL 93
++S V +S DL A V+++ L+++ I LN ++ K IR +G+++R L
Sbjct: 3 TVSGVEVSRDLAYAKVFVTF-LNITDQENETEMVKNGIKVLNGDMAKHIRSLLGKAMR-L 60
Query: 94 RYVPELRFRYDTSLQSYWKLNALMC 118
R VPEL F YD SL +++ L+
Sbjct: 61 RIVPELTFFYDNSLVEGMRMSNLVS 85
>gi|167746754|ref|ZP_02418881.1| hypothetical protein ANACAC_01466 [Anaerostipes caccae DSM 14662]
gi|167653714|gb|EDR97843.1| hypothetical protein ANACAC_01466 [Anaerostipes caccae DSM 14662]
Length = 116
Score = 37.0 bits (84), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 55/103 (53%), Gaps = 4/103 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
KNS + R+ EV+ L +I + E +D I+ + S+ + ++ DL+ YIS+ D
Sbjct: 3 KNSIKNTRINGEVQRELSRII-SREIKDPRIA-PMTSVVDAVVTSDLKQCKAYISVLGDQ 60
Query: 67 -SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
+ + ++ L + +IR + S+ NLR PE+ F D S++
Sbjct: 61 KAKEDTLNGLRSAVGYIRRELAHSI-NLRNTPEITFILDDSIE 102
>gi|281355266|ref|ZP_06241760.1| ribosome-binding factor A [Victivallis vadensis ATCC BAA-548]
gi|281318146|gb|EFB02166.1| ribosome-binding factor A [Victivallis vadensis ATCC BAA-548]
Length = 121
Score = 37.0 bits (84), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 42/70 (60%), Gaps = 3/70 (4%)
Query: 41 VISISEVCMSVDLRVATVYISL--PLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPE 98
++S++EV SVDLR ATVY+S+ + + +V++ L + ++ R+L ++ P
Sbjct: 34 LVSVTEVNTSVDLRNATVYVSIFGGDNAARRKVMNELGEQRLDFQRKLARTLA-FKHTPV 92
Query: 99 LRFRYDTSLQ 108
L FR DT ++
Sbjct: 93 LDFRLDTRIE 102
>gi|332306992|ref|YP_004434843.1| ribosome-binding factor A [Glaciecola agarilytica 4H-3-7+YE-5]
gi|332174321|gb|AEE23575.1| ribosome-binding factor A [Glaciecola agarilytica 4H-3-7+YE-5]
Length = 137
Score = 37.0 bits (84), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 57/109 (52%), Gaps = 4/109 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP-- 68
R RVG+++ + IL NEF++R ++++S V +S DL + +Y++ +
Sbjct: 7 RTDRVGQQIHKEIAS-ILQNEFKNRDPRLGMVTVSAVEVSRDLSYSKIYVTFFENDEEVM 65
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
++ L N +IR + +R +R VP ++F D SL +++ L+
Sbjct: 66 KNYLAILEENKGYIRTLLANRMR-MRAVPAIKFVRDGSLSEGIRISNLV 113
>gi|254430062|ref|ZP_05043769.1| ribosome-binding factor A [Alcanivorax sp. DG881]
gi|196196231|gb|EDX91190.1| ribosome-binding factor A [Alcanivorax sp. DG881]
Length = 137
Score = 37.0 bits (84), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 60/118 (50%), Gaps = 6/118 (5%)
Query: 2 KNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS 61
+++ P+ R R+ ++++ L +L E +D ++ + +I +V +S DL A VY +
Sbjct: 3 RHRRPQGFNRTDRIADQIQRELSR-LLQFEMKDPRVN--LATIQDVTVSRDLSYAEVYFT 59
Query: 62 L--PLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
L + + AL F+R + +SL N R P+LRF YD + + L+ L+
Sbjct: 60 LLGQGEEAGVEAEEALVKASGFLRSSLAKSL-NTRTTPKLRFHYDMTPERAAHLSQLI 116
>gi|117919480|ref|YP_868672.1| ribosome-binding factor A [Shewanella sp. ANA-3]
gi|166219406|sp|A0KTZ7|RBFA_SHESA RecName: Full=Ribosome-binding factor A
gi|117611812|gb|ABK47266.1| ribosome-binding factor A [Shewanella sp. ANA-3]
Length = 146
Score = 37.0 bits (84), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 61/116 (52%), Gaps = 8/116 (6%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K R R+ ++++ L V+L + +D I +++++V +S DL A V+++ +
Sbjct: 2 AKEFSRTRRIAQQLQQEL-AVVLQRDMKDPRIG--FVTVNDVDVSRDLSYAKVFVTF-FE 57
Query: 66 VSPDRVISALNCNIK---FIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ V LN I +IR + ++ LR +PE+RF YD+SL +++ L+
Sbjct: 58 EDKELVQEKLNALITAAPYIRTLVAGRMK-LRVMPEIRFVYDSSLVEGMRMSNLVS 112
>gi|148543932|ref|YP_001271302.1| ribosome-binding factor A [Lactobacillus reuteri DSM 20016]
gi|184153328|ref|YP_001841669.1| ribosome-binding factor A [Lactobacillus reuteri JCM 1112]
gi|194467749|ref|ZP_03073735.1| ribosome-binding factor A [Lactobacillus reuteri 100-23]
gi|227364841|ref|ZP_03848888.1| ribosome-binding factor A [Lactobacillus reuteri MM2-3]
gi|325682533|ref|ZP_08162050.1| ribosome-binding factor A [Lactobacillus reuteri MM4-1A]
gi|172048236|sp|A5VJE1|RBFA_LACRD RecName: Full=Ribosome-binding factor A
gi|229568640|sp|B2G6V7|RBFA_LACRJ RecName: Full=Ribosome-binding factor A
gi|148530966|gb|ABQ82965.1| ribosome-binding factor A [Lactobacillus reuteri DSM 20016]
gi|183224672|dbj|BAG25189.1| ribosome-binding factor A [Lactobacillus reuteri JCM 1112]
gi|194452602|gb|EDX41500.1| ribosome-binding factor A [Lactobacillus reuteri 100-23]
gi|227070104|gb|EEI08480.1| ribosome-binding factor A [Lactobacillus reuteri MM2-3]
gi|324978372|gb|EGC15322.1| ribosome-binding factor A [Lactobacillus reuteri MM4-1A]
Length = 119
Score = 37.0 bits (84), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 59/114 (51%), Gaps = 6/114 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
P R R+ +E++ + ++L R+ + ++I+ V ++ DL+ AT+Y S+ D
Sbjct: 2 PSKQYRVDRLAQEIQKDVDEILLKRVRDPRVQN---VTITGVDVTGDLQQATIYYSILSD 58
Query: 66 VSPD--RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
++ D + + L+ IR +G L N+ PE++F D S+ +++ L+
Sbjct: 59 LASDAEKAQAGLDKATGLIRSELGARL-NIFKTPEIKFVRDPSVAYGSRIDQLI 111
>gi|227544947|ref|ZP_03974996.1| ribosome-binding factor A [Lactobacillus reuteri CF48-3A]
gi|300910022|ref|ZP_07127482.1| ribosome-binding factor A [Lactobacillus reuteri SD2112]
gi|227185058|gb|EEI65129.1| ribosome-binding factor A [Lactobacillus reuteri CF48-3A]
gi|300892670|gb|EFK86030.1| ribosome-binding factor A [Lactobacillus reuteri SD2112]
Length = 119
Score = 37.0 bits (84), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 59/114 (51%), Gaps = 6/114 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
P R R+ +E++ + ++L R+ + ++I+ V ++ DL+ AT+Y S+ D
Sbjct: 2 PSKHYRVDRLAQEIQKDVDEILLKRVRDPRVQN---VTITGVDVTGDLQQATIYYSILSD 58
Query: 66 VSPD--RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
++ D + + L+ IR +G L N+ PE++F D S+ +++ L+
Sbjct: 59 LASDAEKAQAGLDKATGLIRSELGARL-NIFKTPEIKFVRDPSVAYGSRIDQLI 111
>gi|332532412|ref|ZP_08408290.1| ribosome-binding factor A [Pseudoalteromonas haloplanktis ANT/505]
gi|332038055|gb|EGI74502.1| ribosome-binding factor A [Pseudoalteromonas haloplanktis ANT/505]
Length = 160
Score = 37.0 bits (84), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 58/110 (52%), Gaps = 7/110 (6%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPD- 69
R RV ++++ + VIL E +D + ++++S V +S DL A ++I++ D
Sbjct: 6 RTDRVAQQIQKEI-AVILQREIKDPRLG--MVTVSAVEVSRDLSYAKIFITVFNTQDEDA 62
Query: 70 --RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ LN +IR +G+ +R R +PEL+F D SL +++ L+
Sbjct: 63 AKQSAKVLNEATGYIRSLLGKRIR-ARIMPELKFVVDNSLMEGMRISNLV 111
>gi|94501383|ref|ZP_01307903.1| ribosome-binding factor A [Oceanobacter sp. RED65]
gi|94426496|gb|EAT11484.1| ribosome-binding factor A [Oceanobacter sp. RED65]
Length = 129
Score = 37.0 bits (84), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 59/118 (50%), Gaps = 11/118 (9%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL---P 63
K+ R R+GE+++ L ++ + RL +++++ V ++ DL A +Y ++
Sbjct: 3 KDYSRTQRLGEQIKRELAHMLQFDVKDPRL---GIVTLNAVKVASDLGYADIYFTVMKSG 59
Query: 64 LDVSPDRVISA----LNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ + D ++ LN F+R + + LR R P+ RF YD +L+ KL L+
Sbjct: 60 MVEADDETVAETEQILNDMSGFLRTELSQILRT-RITPQPRFHYDVALERGHKLTNLI 116
>gi|256419440|ref|YP_003120093.1| ribosome-binding factor A [Chitinophaga pinensis DSM 2588]
gi|256034348|gb|ACU57892.1| ribosome-binding factor A [Chitinophaga pinensis DSM 2588]
Length = 124
Score = 37.0 bits (84), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 56/111 (50%), Gaps = 3/111 (2%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
+ S+R ++G+ ++ L + F ++ +ISIS V ++ DL A VY+S+
Sbjct: 2 QESKRQKQIGQLLQKELSEIFQRMGFN--VVDGGMISISSVKLTPDLLEARVYLSMFKIA 59
Query: 67 SPDRVISALNCNIKFIRGRIG-RSLRNLRYVPELRFRYDTSLQSYWKLNAL 116
+++ + + I+ +G R + LR VPE+ D +L+ +K+ L
Sbjct: 60 DSHEMVNRIKERMGEIKKDLGNRVGKQLRRVPEISLFLDDTLEYIFKMEEL 110
>gi|169334796|ref|ZP_02861989.1| hypothetical protein ANASTE_01202 [Anaerofustis stercorihominis DSM
17244]
gi|169257534|gb|EDS71500.1| hypothetical protein ANASTE_01202 [Anaerofustis stercorihominis DSM
17244]
Length = 121
Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 41 VISISEVCMSVDLRVATVYIS-LPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPEL 99
+IS+ V + DL+ A VY+S + + + +I L+ F+R I + L N R PEL
Sbjct: 33 IISVVRVKATPDLKYAKVYVSVMGENNKKEEIIGVLDKAKGFLRKSIAKVL-NTRNTPEL 91
Query: 100 RFRYDTSLQSYWKLNALMC 118
F D SL ++ ++
Sbjct: 92 IFELDNSLDYAMHIDEVLA 110
>gi|116515163|ref|YP_802792.1| hypothetical protein BCc_230 [Buchnera aphidicola str. Cc (Cinara
cedri)]
gi|122285441|sp|Q057K0|RBFA_BUCCC RecName: Full=Ribosome-binding factor A
gi|116257017|gb|ABJ90699.1| ribosome-binding factor A [Buchnera aphidicola str. Cc (Cinara
cedri)]
Length = 116
Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 54/105 (51%), Gaps = 8/105 (7%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
K+ R++R+ + + +I N RL S I+I+EV +S DL A V+I+ L+
Sbjct: 3 KDFSRSMRLERSLYKEIAVIIQKNLRDPRLNS--FITITEVKLSYDLSYAKVFITF-LNY 59
Query: 67 SPDR----VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSL 107
+ ++ L +IR + + + LR VP+L F YDTSL
Sbjct: 60 DDKKNIKIILGILQNATGYIRSLLNKKIY-LRIVPKLFFVYDTSL 103
>gi|119477400|ref|ZP_01617591.1| ribosome-binding factor A [marine gamma proteobacterium HTCC2143]
gi|119449326|gb|EAW30565.1| ribosome-binding factor A [marine gamma proteobacterium HTCC2143]
Length = 133
Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 58/110 (52%), Gaps = 7/110 (6%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL---PLDVS 67
R RV + ++ L +I +E +D + ++SI++V +S D+ A V+ ++ +
Sbjct: 7 RTQRVADFLKQELATLI-QSEMRDPRVG--MVSITDVEVSRDMSHAKVFTTVLGKESEQE 63
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
I+ LN F+R + + + N R P+LRF +D+S+ L++L+
Sbjct: 64 AAEAIAVLNKAAGFLRSEMAK-INNARTTPKLRFYFDSSVGRGQFLSSLI 112
>gi|328957412|ref|YP_004374798.1| ribosome-binding factor A [Carnobacterium sp. 17-4]
gi|328673736|gb|AEB29782.1| ribosome-binding factor A [Carnobacterium sp. 17-4]
Length = 115
Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 45/78 (57%), Gaps = 3/78 (3%)
Query: 42 ISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCN--IKFIRGRIGRSLRNLRYVPEL 99
++I++V ++ DL+ ATV+ S+ D + DR + L + +R +G+ L +L PE+
Sbjct: 33 VNITDVRVTGDLQQATVFYSILSDKASDREKTQLGLDKASGLVRSELGQRL-SLYKTPEI 91
Query: 100 RFRYDTSLQSYWKLNALM 117
+F D S++ ++ L+
Sbjct: 92 KFERDESVEYGNHIDELL 109
>gi|192359933|ref|YP_001980960.1| ribosome-binding factor A [Cellvibrio japonicus Ueda107]
gi|238692444|sp|B3PI97|RBFA_CELJU RecName: Full=Ribosome-binding factor A
gi|190686098|gb|ACE83776.1| ribosome-binding factor A [Cellvibrio japonicus Ueda107]
Length = 136
Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 60/116 (51%), Gaps = 9/116 (7%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
P+ R+ RV + ++ L VI RL +++I+ V +S D+ A VY++ +
Sbjct: 2 PREFTRSDRVSDAIQRLLAQVIPQEVRDPRL---GMVNINAVAVSRDMAFAKVYVTF-VG 57
Query: 66 VSPD----RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
V+ + I LN F+R + R L ++R VP+L+F YD + +L++L+
Sbjct: 58 VTDEPKSLEGIGILNKASGFLRSFVAREL-SMRTVPKLQFIYDKTSIRGQELSSLI 112
>gi|239787341|emb|CAX83818.1| Ribosome-binding factor A [uncultured bacterium]
Length = 143
Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 59/123 (47%), Gaps = 7/123 (5%)
Query: 2 KNKNPKNSRRALRVGEEVRSALMWVILNN-----EFQDRLISRD-VISISEVCMSVDLRV 55
K + PK++ R LR+ +EV+ + +I + +++ D +++I+ +S D++
Sbjct: 8 KTQQPKSANRQLRLCQEVQRFVSELITRKVLPPVDIDGVMVTADPLMTIARADVSPDMKT 67
Query: 56 ATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNA 115
A +Y+ D + L +R + + L N+R+ PEL F D ++ +++
Sbjct: 68 AKIYVRHFDDNQLPASLKYLEAVKSVMRHAMAKQL-NMRFTPELSFHVDALVEKERRMDE 126
Query: 116 LMC 118
L
Sbjct: 127 LFS 129
>gi|300775162|ref|ZP_07085024.1| ribosome-binding factor A [Chryseobacterium gleum ATCC 35910]
gi|300505902|gb|EFK37038.1| ribosome-binding factor A [Chryseobacterium gleum ATCC 35910]
Length = 119
Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 41 VISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSL-RNLRYVPEL 99
++S+S+V ++ DL +A +Y+S+ V+ + N R IG+ + + +R +P+L
Sbjct: 33 LVSVSDVKVTADLGIAKIYLSIFPQEFRTAVMKEIEENKPQYRNFIGQKMAKQVRIIPQL 92
Query: 100 RFRYDTSLQSYWKLN 114
F DT+L +L
Sbjct: 93 NFYLDTALDDVERLE 107
>gi|325265384|ref|ZP_08132108.1| ribosome-binding factor A [Clostridium sp. D5]
gi|324029385|gb|EGB90676.1| ribosome-binding factor A [Clostridium sp. D5]
Length = 123
Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 53/103 (51%), Gaps = 4/103 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
KNS + R+ EV+ L IL +D ++ + S+ V ++ DL+ YIS+ D
Sbjct: 3 KNSIKNTRINTEVQRELSN-ILRGGIKDPRVA-PMTSVVAVEVAPDLKTCKAYISVLGDK 60
Query: 67 -SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
+ + I L +IR + R++ N+R PE+RF D S++
Sbjct: 61 KAQEDTIKGLQSAEGYIRRELARTI-NMRNTPEIRFIMDQSIE 102
>gi|167758069|ref|ZP_02430196.1| hypothetical protein CLOSCI_00407 [Clostridium scindens ATCC 35704]
gi|167663966|gb|EDS08096.1| hypothetical protein CLOSCI_00407 [Clostridium scindens ATCC 35704]
Length = 127
Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 47/103 (45%), Gaps = 4/103 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
K S + RV EV+ L +I R+ + +EV DL+ YIS+ D
Sbjct: 3 KRSIKNTRVSTEVQRELSNIIRGGIKDPRVAPWTSVVTAEVAP--DLKTCKAYISVLGDA 60
Query: 67 SP-DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
+ I L +IR + R+L NLR PE+RF D S++
Sbjct: 61 HEQEETIKGLQSAEGYIRRELARTL-NLRNTPEIRFVLDQSIE 102
>gi|326803573|ref|YP_004321391.1| ribosome-binding factor A [Aerococcus urinae ACS-120-V-Col10a]
gi|326651360|gb|AEA01543.1| ribosome-binding factor A [Aerococcus urinae ACS-120-V-Col10a]
Length = 117
Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 59/112 (52%), Gaps = 6/112 (5%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
+RR RV +E+ + IL E +D + I+I++V ++ DL+ AT+Y S D
Sbjct: 4 NRRVERVSQEILREVNS-ILRKEVKDPRVKN--ITITDVDLTGDLQNATIYYSTLSDSQS 60
Query: 69 --DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
++V L+ +R +G+ LR + PE+ F+ D S++ +++ L+
Sbjct: 61 EHEKVQKGLDKVSGLVRSLLGQRLR-IYKTPEVVFKRDESIEYGQRIDQLLA 111
>gi|160903126|ref|YP_001568707.1| ribosome-binding factor A [Petrotoga mobilis SJ95]
gi|182676541|sp|A9BI93|RBFA_PETMO RecName: Full=Ribosome-binding factor A
gi|160360770|gb|ABX32384.1| ribosome-binding factor A [Petrotoga mobilis SJ95]
Length = 117
Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 42 ISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRF 101
I I+ V +S D VY+S LD D +I+ LN R I ++++ + VPE+RF
Sbjct: 34 IDINMVRLSKDKSYLDVYVS-SLDEDIDTIINILNNAKGMFRTLIAKNIKMFK-VPEVRF 91
Query: 102 RYDTSLQSYWKLNALM 117
D +++ ++N L+
Sbjct: 92 HKDEGIEASIRINKLI 107
>gi|153855234|ref|ZP_01996400.1| hypothetical protein DORLON_02414 [Dorea longicatena DSM 13814]
gi|149752233|gb|EDM62164.1| hypothetical protein DORLON_02414 [Dorea longicatena DSM 13814]
Length = 128
Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 49/103 (47%), Gaps = 4/103 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
K S + RV EV+ L +I R+ + +EV + DL+ YIS+ D
Sbjct: 3 KRSIKNTRVNTEVQHELSNIIRGGLKDPRVAPWTSVVAAEV--APDLKTCKAYISVLGDA 60
Query: 67 -SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
++ I L +IR + R+L NLR PE++F D S++
Sbjct: 61 YEQEQTIKGLQSAEGYIRRELARTL-NLRNTPEIKFVLDQSIE 102
>gi|69246866|ref|ZP_00604158.1| Ribosome-binding factor A [Enterococcus faecium DO]
gi|257882940|ref|ZP_05662593.1| ribosome-binding factor A [Enterococcus faecium 1,231,502]
gi|257889281|ref|ZP_05668934.1| ribosome-binding factor A [Enterococcus faecium 1,231,410]
gi|258615954|ref|ZP_05713724.1| ribosome-binding factor A [Enterococcus faecium DO]
gi|260560107|ref|ZP_05832285.1| ribosome-binding factor A [Enterococcus faecium C68]
gi|293560196|ref|ZP_06676698.1| ribosome-binding factor A [Enterococcus faecium E1162]
gi|294620767|ref|ZP_06699974.1| ribosome-binding factor A [Enterococcus faecium U0317]
gi|314937509|ref|ZP_07844842.1| ribosome-binding factor A [Enterococcus faecium TX0133a04]
gi|314942168|ref|ZP_07849022.1| ribosome-binding factor A [Enterococcus faecium TX0133C]
gi|314947492|ref|ZP_07850907.1| ribosome-binding factor A [Enterococcus faecium TX0082]
gi|314951479|ref|ZP_07854528.1| ribosome-binding factor A [Enterococcus faecium TX0133A]
gi|314992569|ref|ZP_07857987.1| ribosome-binding factor A [Enterococcus faecium TX0133B]
gi|314995496|ref|ZP_07860596.1| ribosome-binding factor A [Enterococcus faecium TX0133a01]
gi|68195047|gb|EAN09510.1| Ribosome-binding factor A [Enterococcus faecium DO]
gi|257818598|gb|EEV45926.1| ribosome-binding factor A [Enterococcus faecium 1,231,502]
gi|257825641|gb|EEV52267.1| ribosome-binding factor A [Enterococcus faecium 1,231,410]
gi|260073942|gb|EEW62266.1| ribosome-binding factor A [Enterococcus faecium C68]
gi|291599747|gb|EFF30757.1| ribosome-binding factor A [Enterococcus faecium U0317]
gi|291605868|gb|EFF35300.1| ribosome-binding factor A [Enterococcus faecium E1162]
gi|313590330|gb|EFR69175.1| ribosome-binding factor A [Enterococcus faecium TX0133a01]
gi|313592861|gb|EFR71706.1| ribosome-binding factor A [Enterococcus faecium TX0133B]
gi|313596319|gb|EFR75164.1| ribosome-binding factor A [Enterococcus faecium TX0133A]
gi|313599091|gb|EFR77936.1| ribosome-binding factor A [Enterococcus faecium TX0133C]
gi|313643150|gb|EFS07730.1| ribosome-binding factor A [Enterococcus faecium TX0133a04]
gi|313646042|gb|EFS10622.1| ribosome-binding factor A [Enterococcus faecium TX0082]
Length = 115
Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 54/99 (54%), Gaps = 6/99 (6%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
R RVG+E+ + IL + +D + ++I++V ++ DL+ AT+Y S+ D++ D+
Sbjct: 5 RDRRVGQEILKEVND-ILRKKVRDPRVEN--VTITDVKVTGDLQQATIYYSILSDLASDK 61
Query: 71 VIS--ALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSL 107
+ LN IR +G +L ++ PEL F D S+
Sbjct: 62 KTAQDGLNKASGLIRRELGHNL-SIYKTPELFFELDESV 99
>gi|166030872|ref|ZP_02233701.1| hypothetical protein DORFOR_00552 [Dorea formicigenerans ATCC
27755]
gi|166029139|gb|EDR47896.1| hypothetical protein DORFOR_00552 [Dorea formicigenerans ATCC
27755]
Length = 119
Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 43 SISEVCMSVDLRVATVYISLPLDV-SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRF 101
S+ V ++ DL+ YIS+ DV + + I L FIR + R+L N+R PE++F
Sbjct: 27 SVVAVEVAPDLKTCKAYISVLGDVKAQEDTIKGLRSAEGFIRRELARTL-NMRNTPEIQF 85
Query: 102 RYDTSLQ 108
D S++
Sbjct: 86 ILDQSIE 92
>gi|218282335|ref|ZP_03488625.1| hypothetical protein EUBIFOR_01207 [Eubacterium biforme DSM 3989]
gi|218216708|gb|EEC90246.1| hypothetical protein EUBIFOR_01207 [Eubacterium biforme DSM 3989]
Length = 112
Score = 36.2 bits (82), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 43 SISEVCMSVDLRVATVYIS-LPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRF 101
+I++V + DL A VY++ L D + LN + FIR ++ + ++ +R +PEL F
Sbjct: 33 TITDVRCTNDLSQAKVYVTFLGKQGRNDAGMRVLNQSKGFIRSQVAKKIK-IRKMPELIF 91
Query: 102 RYDTSLQSYWKLNALM 117
DTSL+ K+ ++
Sbjct: 92 VQDTSLEQGNKIENIL 107
>gi|302832513|ref|XP_002947821.1| hypothetical protein VOLCADRAFT_88099 [Volvox carteri f.
nagariensis]
gi|300267169|gb|EFJ51354.1| hypothetical protein VOLCADRAFT_88099 [Volvox carteri f.
nagariensis]
Length = 2634
Score = 36.2 bits (82), Expect = 1.4, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
Query: 41 VISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIK-FIRGRIGRSLRNLRYVPEL 99
V SI+ +S DL+V V++S+ D RV ++ ++R IG+ +R LR PE+
Sbjct: 107 VASITNTYVSNDLQVVKVFVSVYSDDYGKRVAMQNLARLEPYVRVLIGQRVR-LRRTPEV 165
Query: 100 RFRYDTS 106
RF YD S
Sbjct: 166 RFVYDDS 172
>gi|225012557|ref|ZP_03702993.1| ribosome-binding factor A [Flavobacteria bacterium MS024-2A]
gi|225003534|gb|EEG41508.1| ribosome-binding factor A [Flavobacteria bacterium MS024-2A]
Length = 133
Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 37 ISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRN-LRY 95
+S +IS+++V ++ DL A +Y+S+ R L N +R + + ++N LR
Sbjct: 33 VSNLMISVTKVHVTSDLTSAKIYLSIFPTQDAQRHFEVLKENKFQLRHDLSQRMKNQLRR 92
Query: 96 VPELRFRYDTSL 107
VP+L+F D SL
Sbjct: 93 VPDLQFFLDDSL 104
>gi|257878522|ref|ZP_05658175.1| ribosome-binding factor A [Enterococcus faecium 1,230,933]
gi|257884346|ref|ZP_05663999.1| ribosome-binding factor A [Enterococcus faecium 1,231,501]
gi|261207405|ref|ZP_05922091.1| ribosome-binding factor A [Enterococcus faecium TC 6]
gi|289566672|ref|ZP_06447089.1| ribosome-binding factor A [Enterococcus faecium D344SRF]
gi|293556653|ref|ZP_06675218.1| ribosome-binding factor A [Enterococcus faecium E1039]
gi|293567727|ref|ZP_06679069.1| ribosome-binding factor A [Enterococcus faecium E1071]
gi|294613933|ref|ZP_06693868.1| ribosome-binding factor A [Enterococcus faecium E1636]
gi|294618719|ref|ZP_06698251.1| ribosome-binding factor A [Enterococcus faecium E1679]
gi|257812750|gb|EEV41508.1| ribosome-binding factor A [Enterococcus faecium 1,230,933]
gi|257820184|gb|EEV47332.1| ribosome-binding factor A [Enterococcus faecium 1,231,501]
gi|260078296|gb|EEW66001.1| ribosome-binding factor A [Enterococcus faecium TC 6]
gi|289161531|gb|EFD09414.1| ribosome-binding factor A [Enterococcus faecium D344SRF]
gi|291589570|gb|EFF21376.1| ribosome-binding factor A [Enterococcus faecium E1071]
gi|291593208|gb|EFF24782.1| ribosome-binding factor A [Enterococcus faecium E1636]
gi|291595032|gb|EFF26377.1| ribosome-binding factor A [Enterococcus faecium E1679]
gi|291601188|gb|EFF31475.1| ribosome-binding factor A [Enterococcus faecium E1039]
Length = 115
Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 53/99 (53%), Gaps = 6/99 (6%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPD- 69
R RVG+E+ + IL + +D + ++I++V ++ DL+ AT+Y S+ D++ D
Sbjct: 5 RDRRVGQEILKEVND-ILRKKVRDPRVEN--VTITDVKVTGDLQQATIYYSILSDLASDK 61
Query: 70 -RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSL 107
+ LN IR +G +L ++ PEL F D S+
Sbjct: 62 KKAQDGLNKASGLIRRELGHNL-SIYKTPELFFELDESV 99
>gi|269115302|ref|YP_003303065.1| ribosome-binding factor A [Mycoplasma hominis]
gi|268322927|emb|CAX37662.1| Ribosome-binding factor A [Mycoplasma hominis ATCC 23114]
Length = 113
Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 54/105 (51%), Gaps = 6/105 (5%)
Query: 15 VGEEVRSALMWVILNNEFQDRLISRDV--ISISEVCMSVDLRVATVYISLPLDVSPDRVI 72
+ E ++ L+ ++ N F + L DV ISI++V +S D A +Y++L D R +
Sbjct: 4 INHERKTQLLLELIGNSFYE-LKDFDVTNISINDVILSNDGSHAKIYVTLFKD--QKRYL 60
Query: 73 SALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
L FIR + ++ + + +PEL F DT + K++ ++
Sbjct: 61 EKLTTMTPFIRSVVAKNWK-YKVLPELIFEIDTVEEHAAKIDKIL 104
>gi|150009888|ref|YP_001304631.1| ribosome-binding factor A [Parabacteroides distasonis ATCC 8503]
gi|255012869|ref|ZP_05284995.1| ribosome-binding factor A [Bacteroides sp. 2_1_7]
gi|256838403|ref|ZP_05543913.1| ribosome-binding factor A [Parabacteroides sp. D13]
gi|262382836|ref|ZP_06075973.1| ribosome-binding factor A [Bacteroides sp. 2_1_33B]
gi|298374242|ref|ZP_06984200.1| ribosome-binding factor A [Bacteroides sp. 3_1_19]
gi|301312380|ref|ZP_07218296.1| ribosome-binding factor A [Bacteroides sp. 20_3]
gi|149938312|gb|ABR45009.1| ribosome-binding factor A [Parabacteroides distasonis ATCC 8503]
gi|256739322|gb|EEU52646.1| ribosome-binding factor A [Parabacteroides sp. D13]
gi|262295714|gb|EEY83645.1| ribosome-binding factor A [Bacteroides sp. 2_1_33B]
gi|298268610|gb|EFI10265.1| ribosome-binding factor A [Bacteroides sp. 3_1_19]
gi|300829563|gb|EFK60217.1| ribosome-binding factor A [Bacteroides sp. 20_3]
Length = 111
Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 52 DLRVATVYISL-PLDVSPDRVISALNCNIKFIRGRIGRSLR-NLRYVPELRFRYDTSLQS 109
DL VA Y+S+ P D S + ++ A+ N K IR +G+ +R +R +PEL F D SL
Sbjct: 43 DLSVARAYLSIFPSDKSQE-LLEAIRSNTKAIRFDLGQRIRLQVRKIPELSFFIDDSLDY 101
Query: 110 YWKLNALM 117
++ L+
Sbjct: 102 IENIDNLL 109
>gi|94263055|ref|ZP_01286874.1| Ribosome-binding factor A [delta proteobacterium MLMS-1]
gi|94268658|ref|ZP_01291247.1| Ribosome-binding factor A [delta proteobacterium MLMS-1]
gi|93451513|gb|EAT02336.1| Ribosome-binding factor A [delta proteobacterium MLMS-1]
gi|93456598|gb|EAT06706.1| Ribosome-binding factor A [delta proteobacterium MLMS-1]
Length = 131
Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 49/104 (47%), Gaps = 4/104 (3%)
Query: 15 VGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISA 74
V +E+R + ++L R+ + ++I + ++ DLR A +Y S+ D + +
Sbjct: 29 VADEIRQEVATLLLAKVKDPRV---EQVTILKATVTADLRQARIYYSVLHDEAAADAAAG 85
Query: 75 LNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
L FIR + ++L LR VP L F D SL L L+
Sbjct: 86 LESARSFIRRSLAKNL-VLRVVPALIFERDRSLADQQHLEQLLA 128
>gi|160913526|ref|ZP_02076217.1| hypothetical protein EUBDOL_00002 [Eubacterium dolichum DSM 3991]
gi|158434078|gb|EDP12367.1| hypothetical protein EUBDOL_00002 [Eubacterium dolichum DSM 3991]
Length = 120
Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 42 ISISEVCMSVDLRVATVYIS-LPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELR 100
I+I++V +S DL +A VY+S L + AL + FIR + + + +R VP L
Sbjct: 40 ITITDVVVSGDLSIAKVYVSFLGQKAREAAGMKALERSKGFIRSELAKRM-TIRKVPSLV 98
Query: 101 FRYDTSLQSYWKLNALM 117
F D SL+ K+ ++
Sbjct: 99 FLIDDSLEKGNKIENII 115
>gi|262277757|ref|ZP_06055550.1| ribosome-binding factor A [alpha proteobacterium HIMB114]
gi|262224860|gb|EEY75319.1| ribosome-binding factor A [alpha proteobacterium HIMB114]
Length = 121
Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 57/124 (45%), Gaps = 7/124 (5%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
MKN N ++R L+ GE ++ L + I +++I+EV +S DL+ A V+
Sbjct: 1 MKNNNQPFTQRQLKAGENLKKILARSFIQQNIILPEIDTKLVTITEVRVSPDLKHAKVFF 60
Query: 61 SLPL---DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+PL D+ D+ + LN I+ + +++P L F D S K+ L+
Sbjct: 61 -MPLAGRDI--DKFLKTLNEYSLEIKKSASKEW-TAKFMPNLNFVIDESFDYAEKIENLL 116
Query: 118 CLPK 121
K
Sbjct: 117 LKDK 120
>gi|170727893|ref|YP_001761919.1| ribosome-binding factor A [Shewanella woodyi ATCC 51908]
gi|238688729|sp|B1KRQ9|RBFA_SHEWM RecName: Full=Ribosome-binding factor A
gi|169813240|gb|ACA87824.1| ribosome-binding factor A [Shewanella woodyi ATCC 51908]
Length = 140
Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Query: 41 VISISEVCMSVDLRVATVYISLPLDVSP--DRVISALNCNIKFIRGRIGRSLRNLRYVPE 98
++++++V +S DL A V+++ + S + + AL ++R + ++ LR +PE
Sbjct: 34 MVTVNDVEVSRDLSYAKVFVTFFEEDSKLVEEKLEALTTASGYVRSLVAGRMK-LRVMPE 92
Query: 99 LRFRYDTSLQSYWKLNALMC 118
LRF YD SL +++ L+
Sbjct: 93 LRFVYDASLVEGMRMSNLVT 112
>gi|257894719|ref|ZP_05674372.1| ribosome-binding factor A [Enterococcus faecium 1,231,408]
gi|257831098|gb|EEV57705.1| ribosome-binding factor A [Enterococcus faecium 1,231,408]
Length = 113
Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 53/99 (53%), Gaps = 6/99 (6%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPD- 69
R RVG+E+ + IL + +D + ++I++V ++ DL+ AT+Y S+ D++ D
Sbjct: 5 RDRRVGQEILKEVND-ILRKKVRDPRVEN--VTITDVKVTGDLQQATIYYSILSDLASDK 61
Query: 70 -RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSL 107
+ LN IR +G +L ++ PEL F D S+
Sbjct: 62 KKAQDGLNKASGLIRRELGHNL-SIYKTPELFFELDESV 99
>gi|260589526|ref|ZP_05855439.1| ribosome-binding factor A [Blautia hansenii DSM 20583]
gi|260540094|gb|EEX20663.1| ribosome-binding factor A [Blautia hansenii DSM 20583]
Length = 128
Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 57/112 (50%), Gaps = 4/112 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLD 65
KNS + RV EV+ L +I R+ + S++ V ++ DL+ YIS + +
Sbjct: 3 KNSIKNTRVNVEVQHELANLIREGIKDPRI--HPMTSVTAVEVAPDLKTCRAYISVMGNE 60
Query: 66 VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ + I L +IR ++ +++ NLR PE+RF D S++ ++ L+
Sbjct: 61 EAKNNTIVGLKSAEGYIRRQLAKNI-NLRNTPEIRFILDESIEYGVAMSKLI 111
>gi|160872477|ref|ZP_02062609.1| ribosome-binding factor A [Rickettsiella grylli]
gi|159121276|gb|EDP46614.1| ribosome-binding factor A [Rickettsiella grylli]
Length = 130
Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 56/123 (45%), Gaps = 18/123 (14%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATV-YISLPL 64
KNS R R+ + ++ L ILN E D + I+I+ V +S DL A + + L +
Sbjct: 2 QKNSNRVARIADLIKKELSNHILNKEIADSRLK--FITITSVKVSRDLSYADILFTQLSV 59
Query: 65 DVSPDRVISALNCNIKFIRGRIGRSLRNLRY----------VPELRFRYDTSLQSYWKLN 114
+ S ++ ++ +R R LRY +P LRF YD L+ +L+
Sbjct: 60 ENSDEKQKDK-ELAVQLVRKASAR----LRYALAQRLHLYKIPRLRFFYDDFLEESHRLH 114
Query: 115 ALM 117
L+
Sbjct: 115 CLI 117
>gi|217077837|ref|YP_002335555.1| ribosome-binding factor A [Thermosipho africanus TCF52B]
gi|226736652|sp|B7IDY7|RBFA_THEAB RecName: Full=Ribosome-binding factor A
gi|217037692|gb|ACJ76214.1| ribosome-binding factor A [Thermosipho africanus TCF52B]
Length = 126
Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 39 RDVISISEVCMSVDLRVATVYISLPLDVSP-DRVISALNCNIKFIRGRIGRSLRNLRYVP 97
+D I IS V +S D R A V++S+ + + + L + R + +++R L P
Sbjct: 34 KDYIVISRVLISKDRRFADVFVSVIGNSEQRKKAVELLEKYKGYFRTFVAKNVR-LYTAP 92
Query: 98 ELRFRYDTSLQSYWKLNALM 117
ELRF+ D ++ ++N L+
Sbjct: 93 ELRFKEDKGIEESVRINKLL 112
>gi|302670331|ref|YP_003830291.1| ribosome-binding factor A RbfA [Butyrivibrio proteoclasticus B316]
gi|302394804|gb|ADL33709.1| ribosome-binding factor A RbfA [Butyrivibrio proteoclasticus B316]
Length = 142
Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 41 VISISEVCMSVDLRVATVYIS-LPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPEL 99
+ S+ +V ++ DL+ V+++ + D R L ++R + + L N+RY PE+
Sbjct: 34 MTSVMDVEVAPDLKTCKVWVTVMGDDEDRARTAEGLKSAAGYVRSTLAKEL-NMRYTPEI 92
Query: 100 RFRYDTSLQ 108
RF D S++
Sbjct: 93 RFIMDDSIE 101
>gi|282857791|ref|ZP_06267000.1| ribosome-binding factor A [Pyramidobacter piscolens W5455]
gi|282584461|gb|EFB89820.1| ribosome-binding factor A [Pyramidobacter piscolens W5455]
Length = 131
Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Query: 26 VILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGR 85
+IL+ E +D ++ +VI S C S DL+ A VY + + + L ++R
Sbjct: 19 LILSREVRDEKLA-EVIVTSVEC-SKDLKYAKVYYTTLREEGRAEIAKLLEKVSGYVRSS 76
Query: 86 IGRSLRNLRYVPELRFRYDTS 106
+GR L + R VPEL FR+D S
Sbjct: 77 LGRVL-SYRTVPELTFRFDDS 96
>gi|71891892|ref|YP_277622.1| 30S ribosome-binding factor [Candidatus Blochmannia pennsylvanicus
str. BPEN]
gi|123641156|sp|Q493T6|RBFA_BLOPB RecName: Full=Ribosome-binding factor A
gi|71795998|gb|AAZ40749.1| 30S ribosome-binding factor [Candidatus Blochmannia pennsylvanicus
str. BPEN]
Length = 119
Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 60/114 (52%), Gaps = 7/114 (6%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
++S R R+ E+ + +IL ++ D I + +IS V +S DL+ A ++++
Sbjct: 4 QHSYRTQRIANEIHKKV-SIILQHKIDD--IRIGIPTISGVQVSKDLKNANIFVTFINKE 60
Query: 67 SPDRVISA---LNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
P+ + +A L +FIR + ++ +R P L F+YD+SL K+ +L+
Sbjct: 61 GPEEIDTAVMILQRASRFIRFLLANTM-CIRVAPILFFKYDSSLIEGAKVCSLI 113
>gi|210612469|ref|ZP_03289327.1| hypothetical protein CLONEX_01528 [Clostridium nexile DSM 1787]
gi|210151577|gb|EEA82584.1| hypothetical protein CLONEX_01528 [Clostridium nexile DSM 1787]
Length = 123
Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 49/102 (48%), Gaps = 4/102 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLD 65
KNS + RV EV+ L +I R+ + S+ V ++ DL+ YIS L +
Sbjct: 3 KNSIKNTRVNGEVQRELSNIIRGGIKDPRVAP--MTSVVAVEVAPDLKTCKAYISVLGDE 60
Query: 66 VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSL 107
+ + I L +IR + R L N+R PE++F D S+
Sbjct: 61 KAQEDTIKGLQSAEGYIRRELARKL-NMRNTPEIKFVMDQSI 101
>gi|147834309|emb|CAN61115.1| hypothetical protein VITISV_035585 [Vitis vinifera]
Length = 731
Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 55 VATVYISLPLDVSPDRV-ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
V VY+S+ D V I+ L K++R +GR ++ LR PE+RF D SL+
Sbjct: 664 VVKVYVSVFGDEKGKEVAIAGLKSKAKYVRSELGRRMK-LRLTPEIRFVEDESLE 717
>gi|187918656|ref|YP_001884222.1| ribosome-binding factor A [Borrelia hermsii DAH]
gi|238689300|sp|B2S1E6|RBFA_BORHD RecName: Full=Ribosome-binding factor A
gi|119861504|gb|AAX17299.1| ribosome-binding factor A [Borrelia hermsii DAH]
Length = 119
Score = 35.4 bits (80), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 57/110 (51%), Gaps = 10/110 (9%)
Query: 17 EEVRSALMWVILNNEFQDRLISRDV--------ISISEVCMSVDLRVATVYI-SLPLDVS 67
+E+R + + +L E + ++++ + +++ V +S DL A V+I S+ S
Sbjct: 3 KEIRKSKLESLLVQEIGNLILTKGIKDPRVHEFLTVVRVEISNDLINAKVFIGSIKEGAS 62
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
D + ALN FI+G I + +R +R P+L F D ++ + +N ++
Sbjct: 63 LDNAVKALNNAKGFIQGEIVKRIR-VRNTPKLSFLRDDTISKAFYVNKII 111
>gi|15607135|ref|NP_213070.1| ribosome-binding factor A [Aquifex aeolicus VF5]
Length = 107
Score = 35.4 bits (80), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 52/105 (49%), Gaps = 6/105 (5%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
SR+ R+GE+++ + ++ N D V+SI+ V +S D A VY ++ + +
Sbjct: 2 SRKKERLGEQIKEIIASFVVENAPTDL----GVVSITRVELSKDGSKAKVYFTVLPEGNA 57
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKL 113
+RV L N + + +I + ++ +P L F D ++ KL
Sbjct: 58 ERVKDFLEENKRVLLSKIKK--LKVKTIPSLEFEEDREIKIMEKL 100
>gi|288574928|ref|ZP_06393285.1| ribosome-binding factor A [Dethiosulfovibrio peptidovorans DSM
11002]
gi|288570669|gb|EFC92226.1| ribosome-binding factor A [Dethiosulfovibrio peptidovorans DSM
11002]
Length = 146
Score = 35.4 bits (80), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 7/77 (9%)
Query: 44 ISEVCMSVDLRVATVYISLPLDVSP-DR--VISALNCNIKFIRGRIGRSLRNLRYVPELR 100
++ V + DL+ A VY + +SP DR V +L F+R + ++LR +R VPELR
Sbjct: 53 VTGVDCAKDLKSAKVYFTT---ISPEDRRSVSESLKKVRTFLRSSLAQTLR-IRTVPELR 108
Query: 101 FRYDTSLQSYWKLNALM 117
F YDTS + ++ L+
Sbjct: 109 FIYDTSGEYGRSIDRLL 125
>gi|254482563|ref|ZP_05095802.1| ribosome-binding factor A [marine gamma proteobacterium HTCC2148]
gi|214037254|gb|EEB77922.1| ribosome-binding factor A [marine gamma proteobacterium HTCC2148]
Length = 132
Score = 35.4 bits (80), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 6/87 (6%)
Query: 24 MWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVIS---ALNCNIK 80
+ ++ +E +D + ++SI+ V +S D+ A VY + S D ALN
Sbjct: 19 LAALIQHEVRDPRVG--MVSITGVDVSRDMGHAKVYYTSMSANSTDESKECNEALNKAAG 76
Query: 81 FIRGRIGRSLRNLRYVPELRFRYDTSL 107
F+R ++ R ++R VP+LRF +D+S+
Sbjct: 77 FLRSQLSRE-SSMRMVPQLRFYFDSSV 102
>gi|319950917|ref|ZP_08024794.1| ribosome-binding factor A [Dietzia cinnamea P4]
gi|319435410|gb|EFV90653.1| ribosome-binding factor A [Dietzia cinnamea P4]
Length = 152
Score = 35.4 bits (80), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 59/115 (51%), Gaps = 13/115 (11%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL---PLDVS 67
RA R+G+ + ++ + +E +D + + ++I++ ++ DLRVAT+Y ++ LD
Sbjct: 6 RAGRLGKRI-GEIVATAIEHEIKDPRL--EYVTITDSRITADLRVATLYYTVRGETLDEE 62
Query: 68 PDRVISALNCNIKFIRGR----IGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
PD + A + RGR +GR +++ PEL F D+ + + L+
Sbjct: 63 PD--LEAAEAALTAARGRLRTMVGRQT-GVKFTPELTFVLDSVPDAARHMEELLA 114
>gi|266622968|ref|ZP_06115903.1| ribosome-binding factor A [Clostridium hathewayi DSM 13479]
gi|288865261|gb|EFC97559.1| ribosome-binding factor A [Clostridium hathewayi DSM 13479]
Length = 120
Score = 35.4 bits (80), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 4/112 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
KNS + R+ EV+ L +I E +D I + ++ V ++ DL+ YIS+ D
Sbjct: 3 KNSIKNTRINMEVQRELSEII-RLEIKDPRI-HPMTTVVAVSVTPDLKFCKAYISILGDE 60
Query: 67 SPDR-VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ I L +IR + R + NLR PE++F D S++ ++ L+
Sbjct: 61 EAGKATIEGLKSAEGYIRRELARRV-NLRNTPEIKFILDQSIEYGVNMSKLI 111
>gi|26553566|ref|NP_757500.1| ribosome-binding factor A [Mycoplasma penetrans HF-2]
gi|29427771|sp|Q8EWT9|RBFA_MYCPE RecName: Full=Ribosome-binding factor A
gi|26453572|dbj|BAC43904.1| ribosome binding factor A [Mycoplasma penetrans HF-2]
Length = 116
Score = 35.4 bits (80), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 43 SISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFR 102
++ V +S D +A VYIS D+++ +N F R + ++L NLR P + F
Sbjct: 37 TVHYVTLSKDKSIAKVYISCYDKTIIDKILKKINGASGFFRTILAKNL-NLRKAPAIVFL 95
Query: 103 YDTSLQSYWKLNALM 117
D S+ ++N+L+
Sbjct: 96 NDESIDKIDEINSLL 110
>gi|58584793|ref|YP_198366.1| ribosome-binding factor A [Wolbachia endosymbiont strain TRS of
Brugia malayi]
gi|58419109|gb|AAW71124.1| Ribosome-binding factor A [Wolbachia endosymbiont strain TRS of
Brugia malayi]
Length = 114
Score = 35.0 bits (79), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 62/112 (55%), Gaps = 10/112 (8%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP----LDV 66
R L++ +R A+ V++ + ++ +++V+ IS+V +S DL+ A VYI L
Sbjct: 6 RNLKIASVLRRAISKVLM----EGKVFNKNVV-ISDVKLSGDLKKADVYIVLSSLSKKKY 60
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ + V+ +N + IR I S +LR++P+L F+ D + ++ ++ ++
Sbjct: 61 NINTVVDEINQSAWLIRKSI-LSYVDLRFIPKLVFKADLAFDNFVNISKILS 111
>gi|229824130|ref|ZP_04450199.1| hypothetical protein GCWU000282_01434 [Catonella morbi ATCC 51271]
gi|229786484|gb|EEP22598.1| hypothetical protein GCWU000282_01434 [Catonella morbi ATCC 51271]
Length = 119
Score = 35.0 bits (79), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
Query: 42 ISISEVCMSVDLRVATVYISLPLDVSPDR--VISALNCNIKFIRGRIGRSLRNLRYVPEL 99
++I++V ++ DL+ AT++ S D + R + L +R +G+ L+ L PE+
Sbjct: 33 VTITDVDLTGDLQQATIFYSTLSDKAGQRQKTEAGLKAVTGLVRSELGKVLK-LYKTPEI 91
Query: 100 RFRYDTSLQSYWKLNALM 117
RF D S+ +++ L+
Sbjct: 92 RFERDRSVDYGNRIDQLL 109
>gi|160940468|ref|ZP_02087813.1| hypothetical protein CLOBOL_05358 [Clostridium bolteae ATCC
BAA-613]
gi|158437048|gb|EDP14815.1| hypothetical protein CLOBOL_05358 [Clostridium bolteae ATCC
BAA-613]
Length = 133
Score = 35.0 bits (79), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 49/103 (47%), Gaps = 4/103 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
KNS + R+ EV+ L +I R+ + S+ V ++ DL+ YIS+ D
Sbjct: 3 KNSIKNTRINMEVQRELSEIIRGGIKDPRI--HPMTSVVSVEVTPDLKFCKAYISVLGDE 60
Query: 67 SPDR-VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
+ I L ++R + R + NLR PEL+F D S++
Sbjct: 61 EAGKSTIQGLKSAEGYVRRELARRV-NLRNTPELKFILDQSIE 102
>gi|197303048|ref|ZP_03168096.1| hypothetical protein RUMLAC_01775 [Ruminococcus lactaris ATCC
29176]
gi|197297903|gb|EDY32455.1| hypothetical protein RUMLAC_01775 [Ruminococcus lactaris ATCC
29176]
Length = 127
Score = 35.0 bits (79), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 52/103 (50%), Gaps = 4/103 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
KNS + RV EV+ L IL +D ++ + S+ V ++ DL+ YIS+ D
Sbjct: 3 KNSIKNTRVNAEVQRELSN-ILRAGIKDPRVA-PMTSVVAVEVAPDLKTCKAYISVLGDE 60
Query: 67 SPDR-VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
+ I L +IR + R++ N+R PE+RF D S++
Sbjct: 61 KAQQDTIRGLQSAEGYIRRELARTI-NMRNTPEIRFIVDQSIE 102
>gi|189219876|ref|YP_001940517.1| Ribosome-binding factor A [Methylacidiphilum infernorum V4]
gi|189186734|gb|ACD83919.1| Ribosome-binding factor A [Methylacidiphilum infernorum V4]
Length = 116
Score = 35.0 bits (79), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 55/99 (55%), Gaps = 8/99 (8%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRL-ISRDVISISEVCMSVDLRVATVYISL-PLDVSP 68
RA+RV E +R L + FQ + + V++IS V + DL+ A++++SL +S
Sbjct: 4 RAIRVSEVIRRELSFC-----FQREVELEGLVLTISSVETTADLKEASIFVSLFDASISD 58
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSL 107
+ ++ LN + + IG+ L++ ++ P L F+ D SL
Sbjct: 59 ELLLDILNRHRSEWQRWIGKRLQS-KFTPRLTFKIDDSL 96
>gi|171913141|ref|ZP_02928611.1| ribosome-binding factor A [Verrucomicrobium spinosum DSM 4136]
Length = 163
Score = 35.0 bits (79), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 9/86 (10%)
Query: 41 VISISEVCMSVDLRVATVYIS-LPLDVSPDRVISALNCNIKFIRGRIGRSLRN---LRYV 96
V++I EV ++ DL+ +Y+ L + + ++ LN N RG I R L L+
Sbjct: 42 VVTIHEVDVTPDLKQCFIYVGILGKEHAAPNIVRKLNEN----RGLIQRELFKRVILKNS 97
Query: 97 PELRFRYDTSLQSYWKLNALM-CLPK 121
P L F+YDTS++ ++ AL+ LP+
Sbjct: 98 PSLTFKYDTSIERGVRVLALIETLPE 123
>gi|118579400|ref|YP_900650.1| ribosome-binding factor A [Pelobacter propionicus DSM 2379]
gi|166219384|sp|A1AMM2|RBFA_PELPD RecName: Full=Ribosome-binding factor A
gi|118502110|gb|ABK98592.1| ribosome-binding factor A [Pelobacter propionicus DSM 2379]
Length = 122
Score = 34.7 bits (78), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 58/110 (52%), Gaps = 5/110 (4%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
S+R+ ++ E + + IL+ D I ++++ V + DL +A +Y + D
Sbjct: 2 SKRSEKLAETIHETISS-ILSRGLNDPRIG--FVTLTAVDVVEDLSIARIYFTAIGDRDA 58
Query: 69 DRVISA-LNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ A LN ++R +G+ L +R++PEL F+YD S + ++++++
Sbjct: 59 RKNSEAGLNSAKGYLRRELGKVL-TIRHIPELIFKYDESQEYGNRIDSIL 107
>gi|227551752|ref|ZP_03981801.1| ribosome-binding factor A [Enterococcus faecium TX1330]
gi|257887087|ref|ZP_05666740.1| ribosome-binding factor A [Enterococcus faecium 1,141,733]
gi|257895652|ref|ZP_05675305.1| ribosome-binding factor A [Enterococcus faecium Com12]
gi|257898242|ref|ZP_05677895.1| ribosome-binding factor A [Enterococcus faecium Com15]
gi|293377737|ref|ZP_06623926.1| ribosome-binding factor A [Enterococcus faecium PC4.1]
gi|293570609|ref|ZP_06681660.1| ribosome-binding factor A [Enterococcus faecium E980]
gi|227179057|gb|EEI60029.1| ribosome-binding factor A [Enterococcus faecium TX1330]
gi|257823141|gb|EEV50073.1| ribosome-binding factor A [Enterococcus faecium 1,141,733]
gi|257832217|gb|EEV58638.1| ribosome-binding factor A [Enterococcus faecium Com12]
gi|257836154|gb|EEV61228.1| ribosome-binding factor A [Enterococcus faecium Com15]
gi|291609280|gb|EFF38551.1| ribosome-binding factor A [Enterococcus faecium E980]
gi|292643737|gb|EFF61858.1| ribosome-binding factor A [Enterococcus faecium PC4.1]
Length = 115
Score = 34.7 bits (78), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 53/99 (53%), Gaps = 6/99 (6%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPD- 69
R RVG+E+ + IL + +D + ++I++V ++ DL+ AT+Y S+ D++ +
Sbjct: 5 RDRRVGQEILKEVN-AILRKKVRDPRVQD--VTITDVHVTGDLQQATIYYSILSDLASEK 61
Query: 70 -RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSL 107
+ L+ IR +G +L ++ PEL F D S+
Sbjct: 62 KKAQEGLDKASGLIRRELGHNL-SIYKTPELSFELDESV 99
>gi|33519580|ref|NP_878412.1| ribosome-binding factor A (P15B protein) [Candidatus Blochmannia
floridanus]
gi|39931815|sp|Q7VQM2|RBFA_BLOFL RecName: Full=Ribosome-binding factor A
gi|33517243|emb|CAD83626.1| ribosome-binding factor A (P15B protein) [Candidatus Blochmannia
floridanus]
Length = 117
Score = 34.7 bits (78), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 62/114 (54%), Gaps = 15/114 (13%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
R R+ +E++ + +I++++ D + + +IS V +S DL+ A ++I+ LD +
Sbjct: 8 RLQRISQEIQRK-VAIIIHHKVHDPRVG--LPTISGVQVSRDLKNAKIFITF-LDKNN-- 61
Query: 71 VISALNCNI-------KFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
I +N +I FIR + S+ NLR VP L F+YD SL+ K+ L+
Sbjct: 62 -IEEINFSILILQKASGFIRFLLANSM-NLRTVPVLLFKYDYSLKEGIKICKLI 113
>gi|225570598|ref|ZP_03779623.1| hypothetical protein CLOHYLEM_06700 [Clostridium hylemonae DSM
15053]
gi|225160611|gb|EEG73230.1| hypothetical protein CLOHYLEM_06700 [Clostridium hylemonae DSM
15053]
Length = 126
Score = 34.7 bits (78), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 8/109 (7%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
MK ++ KN+R V EV+ L +I R+ + +EV + DL+ YI
Sbjct: 1 MKKRSIKNTR----VNTEVQRELSSIIRGGIKDPRVAPWTSVVAAEV--APDLKTCKAYI 54
Query: 61 SLPLDVSPDR-VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
S+ D + I L +IR + R+L N+R PE++F D S++
Sbjct: 55 SVLGDEEAQKETIKGLQSAEGYIRRELARNL-NMRNTPEIKFILDQSIE 102
>gi|293115580|ref|ZP_06604543.1| ribosome-binding factor A [Butyrivibrio crossotus DSM 2876]
gi|292808920|gb|EFF68125.1| ribosome-binding factor A [Butyrivibrio crossotus DSM 2876]
Length = 112
Score = 34.7 bits (78), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 4/96 (4%)
Query: 14 RVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV-SPDRVI 72
RV EV L +I +E +D I+ + S+ V ++ DL+ YIS+ D S D I
Sbjct: 3 RVNNEVLRELSNII-RSEIKDPRINP-MTSVVAVDVAPDLKTCKAYISVLGDKDSQDSTI 60
Query: 73 SALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
+ L +IR + +++ NLR PE+ F D S++
Sbjct: 61 TGLKSAASYIRTLLAKTV-NLRNTPEITFILDQSIE 95
>gi|118594127|ref|ZP_01551474.1| ribosome-binding factor A [Methylophilales bacterium HTCC2181]
gi|118439905|gb|EAV46532.1| ribosome-binding factor A [Methylophilales bacterium HTCC2181]
Length = 111
Score = 34.3 bits (77), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 62/111 (55%), Gaps = 5/111 (4%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
K+ R+ R+ ++++ L +L E +D +++ I+I +V +S L+ A V+ + +
Sbjct: 3 KDYPRSDRIRQQIKKELAN-LLQKEVKDPSLNQ--ITILDVDVSPCLKHAKVFF-VSQEE 58
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ + V+ L ++ F+R ++ + + R +P+L F YD S+ K++ L+
Sbjct: 59 ASEEVMKGLARSMPFLRSQLAKRM-TTRGIPKLHFVYDKSIDESIKISKLL 108
>gi|283797341|ref|ZP_06346494.1| ribosome-binding factor A [Clostridium sp. M62/1]
gi|291075013|gb|EFE12377.1| ribosome-binding factor A [Clostridium sp. M62/1]
gi|295090491|emb|CBK76598.1| ribosome-binding factor A [Clostridium cf. saccharolyticum K10]
gi|295115415|emb|CBL36262.1| ribosome-binding factor A [butyrate-producing bacterium SM4/1]
Length = 143
Score = 34.3 bits (77), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 54/112 (48%), Gaps = 4/112 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLD 65
KNS + R+ EV+ L +I + E +D I + ++ V ++ DL+ YIS L +
Sbjct: 16 KNSIKNTRINSEVQRELSEII-SREIKDPRI-HPMTTVVAVEVTPDLKYCKAYISVLGSE 73
Query: 66 VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ I L F+R ++ + NLR PE+ F D S++ + L+
Sbjct: 74 EAGKETIKGLKSAEGFVRRQLASRI-NLRNTPEITFVLDQSIEYGVNMTHLI 124
>gi|226323227|ref|ZP_03798745.1| hypothetical protein COPCOM_00999 [Coprococcus comes ATCC 27758]
gi|225208417|gb|EEG90771.1| hypothetical protein COPCOM_00999 [Coprococcus comes ATCC 27758]
Length = 123
Score = 33.9 bits (76), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 50/103 (48%), Gaps = 4/103 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
KNS + RV EV+ L IL +D ++ + S+ V ++ DL+ YIS+ D
Sbjct: 3 KNSIKNTRVNAEVQREL-STILRGGIKDPRVA-PMTSVVAVEVAPDLKTCKAYISVLGDE 60
Query: 67 SPDR-VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
+ L +IR + +L N+R PE++F D S++
Sbjct: 61 KAQADTLKGLQSAEGYIRRELAHTL-NMRNTPEIKFVLDQSIE 102
>gi|120597901|ref|YP_962475.1| ribosome-binding factor A [Shewanella sp. W3-18-1]
gi|146293927|ref|YP_001184351.1| ribosome-binding factor A [Shewanella putrefaciens CN-32]
gi|166219405|sp|A4Y9B9|RBFA_SHEPC RecName: Full=Ribosome-binding factor A
gi|166219407|sp|A1RGX6|RBFA_SHESW RecName: Full=Ribosome-binding factor A
gi|120557994|gb|ABM23921.1| ribosome-binding factor A [Shewanella sp. W3-18-1]
gi|145565617|gb|ABP76552.1| ribosome-binding factor A [Shewanella putrefaciens CN-32]
Length = 149
Score = 33.9 bits (76), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 45/82 (54%), Gaps = 9/82 (10%)
Query: 42 ISISEVCMSVDLRVATVYISLPLDVSPDRVI-----SALNCNIKFIRGRIGRSLRNLRYV 96
+++++V +S DL A V+++ D+ + +AL +IR + ++ LR +
Sbjct: 35 VTVNDVDVSRDLSYAKVFVTF---FEEDKAVVQEKLNALISAAPYIRTLVAGRMK-LRVM 90
Query: 97 PELRFRYDTSLQSYWKLNALMC 118
PELRF YD+SL +++ L+
Sbjct: 91 PELRFVYDSSLVEGMRMSNLVS 112
>gi|325661691|ref|ZP_08150314.1| ribosome-binding factor A [Lachnospiraceae bacterium 4_1_37FAA]
gi|325471944|gb|EGC75159.1| ribosome-binding factor A [Lachnospiraceae bacterium 4_1_37FAA]
Length = 119
Score = 33.9 bits (76), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 52/103 (50%), Gaps = 4/103 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
KNS + RV EV+ L IL + +D ++ + S+ V ++ DL+ YIS+ D
Sbjct: 3 KNSIKNTRVNMEVQRELSS-ILRDGIKDPRVA-PMTSVVAVEVAPDLKTCKAYISVLGDE 60
Query: 67 SPDR-VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
+ ++ L +IR + L N+R PE++F D S++
Sbjct: 61 KAQQDTVAGLQSAEGYIRRELAHRL-NMRNTPEVKFVLDQSIE 102
>gi|319427304|gb|ADV55378.1| ribosome-binding factor A [Shewanella putrefaciens 200]
Length = 149
Score = 33.5 bits (75), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 45/82 (54%), Gaps = 9/82 (10%)
Query: 42 ISISEVCMSVDLRVATVYISLPLDVSPDRVI-----SALNCNIKFIRGRIGRSLRNLRYV 96
+++++V +S DL A V+++ D+ + +AL +IR + ++ LR +
Sbjct: 35 VTVNDVDVSRDLSYAKVFVTF---FEEDKAVVQEKLNALISAAPYIRTLVAGRMK-LRVM 90
Query: 97 PELRFRYDTSLQSYWKLNALMC 118
PELRF YD+SL +++ L+
Sbjct: 91 PELRFVYDSSLVEGMRMSNLVS 112
>gi|160876522|ref|YP_001555838.1| ribosome-binding factor A [Shewanella baltica OS195]
gi|160862044|gb|ABX50578.1| ribosome-binding factor A [Shewanella baltica OS195]
Length = 157
Score = 33.5 bits (75), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 45/82 (54%), Gaps = 9/82 (10%)
Query: 42 ISISEVCMSVDLRVATVYISLPLDVSPDRVI-----SALNCNIKFIRGRIGRSLRNLRYV 96
+++++V +S DL A V+++ D+ + +AL +IR + ++ LR +
Sbjct: 40 VTVNDVDVSRDLSYAKVFVTF---FEEDKAVVQEKLNALISAAPYIRTLVAGRMK-LRVM 95
Query: 97 PELRFRYDTSLQSYWKLNALMC 118
PELRF YD+SL +++ L+
Sbjct: 96 PELRFIYDSSLVEGMRMSNLVS 117
>gi|126175438|ref|YP_001051587.1| ribosome-binding factor A [Shewanella baltica OS155]
gi|153001788|ref|YP_001367469.1| ribosome-binding factor A [Shewanella baltica OS185]
gi|217972316|ref|YP_002357067.1| ribosome-binding factor A [Shewanella baltica OS223]
gi|125998643|gb|ABN62718.1| ribosome-binding factor A [Shewanella baltica OS155]
gi|151366406|gb|ABS09406.1| ribosome-binding factor A [Shewanella baltica OS185]
gi|217497451|gb|ACK45644.1| ribosome-binding factor A [Shewanella baltica OS223]
Length = 157
Score = 33.5 bits (75), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 45/82 (54%), Gaps = 9/82 (10%)
Query: 42 ISISEVCMSVDLRVATVYISLPLDVSPDRVI-----SALNCNIKFIRGRIGRSLRNLRYV 96
+++++V +S DL A V+++ D+ + +AL +IR + ++ LR +
Sbjct: 40 VTVNDVDVSRDLSYAKVFVTF---FEEDKAVVQEKLNALISAAPYIRTLVAGRMK-LRVM 95
Query: 97 PELRFRYDTSLQSYWKLNALMC 118
PELRF YD+SL +++ L+
Sbjct: 96 PELRFIYDSSLVEGMRMSNLVS 117
>gi|189039674|sp|A9KZX0|RBFA_SHEB9 RecName: Full=Ribosome-binding factor A
gi|315268716|gb|ADT95569.1| ribosome-binding factor A [Shewanella baltica OS678]
Length = 152
Score = 33.5 bits (75), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 45/82 (54%), Gaps = 9/82 (10%)
Query: 42 ISISEVCMSVDLRVATVYISLPLDVSPDRVI-----SALNCNIKFIRGRIGRSLRNLRYV 96
+++++V +S DL A V+++ D+ + +AL +IR + ++ LR +
Sbjct: 35 VTVNDVDVSRDLSYAKVFVTF---FEEDKAVVQEKLNALISAAPYIRTLVAGRMK-LRVM 90
Query: 97 PELRFRYDTSLQSYWKLNALMC 118
PELRF YD+SL +++ L+
Sbjct: 91 PELRFIYDSSLVEGMRMSNLVS 112
>gi|172044106|sp|A3D7K5|RBFA_SHEB5 RecName: Full=Ribosome-binding factor A
gi|172044119|sp|A6WRG7|RBFA_SHEB8 RecName: Full=Ribosome-binding factor A
Length = 152
Score = 33.5 bits (75), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 45/82 (54%), Gaps = 9/82 (10%)
Query: 42 ISISEVCMSVDLRVATVYISLPLDVSPDRVI-----SALNCNIKFIRGRIGRSLRNLRYV 96
+++++V +S DL A V+++ D+ + +AL +IR + ++ LR +
Sbjct: 35 VTVNDVDVSRDLSYAKVFVTF---FEEDKAVVQEKLNALISAAPYIRTLVAGRMK-LRVM 90
Query: 97 PELRFRYDTSLQSYWKLNALMC 118
PELRF YD+SL +++ L+
Sbjct: 91 PELRFIYDSSLVEGMRMSNLVS 112
Searching..................................................done
Results from round 2
>gi|148560113|ref|YP_001259960.1| ribosome-binding factor A [Brucella ovis ATCC 25840]
gi|225626531|ref|ZP_03784570.1| ribosome-binding factor A [Brucella ceti str. Cudo]
gi|237816506|ref|ZP_04595499.1| ribosome-binding factor A [Brucella abortus str. 2308 A]
gi|148371370|gb|ABQ61349.1| ribosome-binding factor A [Brucella ovis ATCC 25840]
gi|225618188|gb|EEH15231.1| ribosome-binding factor A [Brucella ceti str. Cudo]
gi|237788573|gb|EEP62788.1| ribosome-binding factor A [Brucella abortus str. 2308 A]
Length = 197
Score = 173 bits (441), Expect = 5e-42, Method: Composition-based stats.
Identities = 57/120 (47%), Positives = 78/120 (65%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
S+R LRVGE+VR AL V+ E +D LI R VIS+SEV MS DL++AT +I+ P
Sbjct: 61 SQRQLRVGEQVRHALAQVLQRGEIRDDLIERTVISVSEVRMSPDLKIATCFITPLGSADP 120
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALEK 128
VI AL + KFIRGR+ SL ++Y+PE RFR DTS ++ K++AL+ P++ L
Sbjct: 121 QAVIKALASHAKFIRGRVAPSLAQMKYMPEFRFRPDTSFDNFSKIDALLRSPEVARDLSH 180
>gi|254780786|ref|YP_003065199.1| ribosome-binding factor A [Candidatus Liberibacter asiaticus str.
psy62]
gi|254040463|gb|ACT57259.1| ribosome-binding factor A [Candidatus Liberibacter asiaticus str.
psy62]
Length = 128
Score = 173 bits (440), Expect = 6e-42, Method: Composition-based stats.
Identities = 128/128 (100%), Positives = 128/128 (100%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI
Sbjct: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
Query: 61 SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP
Sbjct: 61 SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
Query: 121 KIPVALEK 128
KIPVALEK
Sbjct: 121 KIPVALEK 128
>gi|326539882|gb|ADZ88097.1| ribosome-binding factor A [Brucella melitensis M5-90]
Length = 197
Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats.
Identities = 57/120 (47%), Positives = 78/120 (65%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
S+R LRVGE+VR AL V+ E +D LI R VIS+SEV MS DL++AT +I+ P
Sbjct: 61 SQRQLRVGEQVRHALAQVLQRGEIRDDLIERTVISVSEVRMSPDLKIATCFITPLGSADP 120
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALEK 128
VI AL + KFIRGR+ SL ++Y+PE RFR DTS ++ K++AL+ P++ L
Sbjct: 121 QAVIKALASHAKFIRGRVAPSLAQMKYMPEFRFRPDTSFDNFSKIDALLRFPEVARDLSH 180
>gi|326410164|gb|ADZ67229.1| ribosome-binding factor A [Brucella melitensis M28]
Length = 192
Score = 170 bits (433), Expect = 4e-41, Method: Composition-based stats.
Identities = 57/120 (47%), Positives = 78/120 (65%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
S+R LRVGE+VR AL V+ E +D LI R VIS+SEV MS DL++AT +I+ P
Sbjct: 56 SQRQLRVGEQVRHALAQVLQRGEIRDDLIERTVISVSEVRMSPDLKIATCFITPLGSADP 115
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALEK 128
VI AL + KFIRGR+ SL ++Y+PE RFR DTS ++ K++AL+ P++ L
Sbjct: 116 QAVIKALASHAKFIRGRVAPSLAQMKYMPEFRFRPDTSFDNFSKIDALLRFPEVARDLSH 175
>gi|297247390|ref|ZP_06931108.1| ribosome-binding factor A [Brucella abortus bv. 5 str. B3196]
gi|297174559|gb|EFH33906.1| ribosome-binding factor A [Brucella abortus bv. 5 str. B3196]
Length = 171
Score = 170 bits (433), Expect = 5e-41, Method: Composition-based stats.
Identities = 57/120 (47%), Positives = 78/120 (65%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
S+R LRVGE+VR AL V+ E +D LI R VIS+SEV MS DL++AT +I+ P
Sbjct: 35 SQRQLRVGEQVRHALAQVLQRGEIRDDLIERTVISVSEVRMSPDLKIATCFITPLGSADP 94
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALEK 128
VI AL + KFIRGR+ SL ++Y+PE RFR DTS ++ K++AL+ P++ L
Sbjct: 95 QAVIKALASHAKFIRGRVAPSLAQMKYMPEFRFRPDTSFDNFSKIDALLRSPEVARDLSH 154
>gi|163757751|ref|ZP_02164840.1| ribosome-binding factor A [Hoeflea phototrophica DFL-43]
gi|162285253|gb|EDQ35535.1| ribosome-binding factor A [Hoeflea phototrophica DFL-43]
Length = 148
Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats.
Identities = 55/127 (43%), Positives = 82/127 (64%)
Query: 2 KNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS 61
K S+R LRVGE+VR+A+ V+ + +D ++S +IS++EV MS DL+VAT Y++
Sbjct: 3 KPTTSAPSQRMLRVGEQVRAAITQVLQRGDIRDPILSNTLISVTEVRMSPDLQVATAYVT 62
Query: 62 LPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
I+ALN N +FIRGRI LR +R +PELRFR DTS ++Y K++AL+ P+
Sbjct: 63 PLGVEDHAATIAALNKNARFIRGRISPDLRQMRNIPELRFRDDTSFENYSKIDALLRSPE 122
Query: 122 IPVALEK 128
+ L+
Sbjct: 123 VARDLDH 129
>gi|23503014|ref|NP_699141.1| ribosome-binding factor A [Brucella suis 1330]
gi|62291003|ref|YP_222796.1| ribosome-binding factor A [Brucella abortus bv. 1 str. 9-941]
gi|82700912|ref|YP_415486.1| ribosome-binding factor A [Brucella melitensis biovar Abortus 2308]
gi|161620074|ref|YP_001593961.1| ribosome-binding factor A [Brucella canis ATCC 23365]
gi|189025215|ref|YP_001935983.1| ribosome-binding factor A [Brucella abortus S19]
gi|254690297|ref|ZP_05153551.1| ribosome-binding factor A [Brucella abortus bv. 6 str. 870]
gi|254694785|ref|ZP_05156613.1| ribosome-binding factor A [Brucella abortus bv. 3 str. Tulya]
gi|254696413|ref|ZP_05158241.1| ribosome-binding factor A [Brucella abortus bv. 2 str. 86/8/59]
gi|254700797|ref|ZP_05162625.1| ribosome-binding factor A [Brucella suis bv. 5 str. 513]
gi|254705165|ref|ZP_05166993.1| ribosome-binding factor A [Brucella suis bv. 3 str. 686]
gi|254707319|ref|ZP_05169147.1| ribosome-binding factor A [Brucella pinnipedialis M163/99/10]
gi|254709141|ref|ZP_05170952.1| ribosome-binding factor A [Brucella pinnipedialis B2/94]
gi|254718204|ref|ZP_05180015.1| ribosome-binding factor A [Brucella sp. 83/13]
gi|254731326|ref|ZP_05189904.1| ribosome-binding factor A [Brucella abortus bv. 4 str. 292]
gi|256030666|ref|ZP_05444280.1| ribosome-binding factor A [Brucella pinnipedialis M292/94/1]
gi|256158667|ref|ZP_05456550.1| ribosome-binding factor A [Brucella ceti M490/95/1]
gi|256254071|ref|ZP_05459607.1| ribosome-binding factor A [Brucella ceti B1/94]
gi|256258550|ref|ZP_05464086.1| ribosome-binding factor A [Brucella abortus bv. 9 str. C68]
gi|256370561|ref|YP_003108072.1| ribosome-binding factor A [Brucella microti CCM 4915]
gi|260169570|ref|ZP_05756381.1| ribosome-binding factor A [Brucella sp. F5/99]
gi|260546266|ref|ZP_05822006.1| ribosome-binding factor A [Brucella abortus NCTC 8038]
gi|260567367|ref|ZP_05837837.1| ribosome-binding factor A [Brucella suis bv. 4 str. 40]
gi|260755837|ref|ZP_05868185.1| ribosome-binding factor A [Brucella abortus bv. 6 str. 870]
gi|260759060|ref|ZP_05871408.1| ribosome-binding factor A [Brucella abortus bv. 4 str. 292]
gi|260760785|ref|ZP_05873128.1| ribosome-binding factor A [Brucella abortus bv. 2 str. 86/8/59]
gi|260884862|ref|ZP_05896476.1| ribosome-binding factor A [Brucella abortus bv. 9 str. C68]
gi|261215112|ref|ZP_05929393.1| ribosome-binding factor A [Brucella abortus bv. 3 str. Tulya]
gi|261221212|ref|ZP_05935493.1| ribosome-binding factor A [Brucella ceti B1/94]
gi|261314801|ref|ZP_05953998.1| ribosome-binding factor A [Brucella pinnipedialis M163/99/10]
gi|261316640|ref|ZP_05955837.1| ribosome-binding factor A [Brucella pinnipedialis B2/94]
gi|261751305|ref|ZP_05995014.1| ribosome-binding factor A [Brucella suis bv. 5 str. 513]
gi|261755870|ref|ZP_05999579.1| ribosome-binding factor A [Brucella suis bv. 3 str. 686]
gi|261759097|ref|ZP_06002806.1| ribosome-binding factor A [Brucella sp. F5/99]
gi|265983161|ref|ZP_06095896.1| ribosome-binding factor A [Brucella sp. 83/13]
gi|265987712|ref|ZP_06100269.1| ribosome-binding factor A [Brucella pinnipedialis M292/94/1]
gi|265997173|ref|ZP_06109730.1| ribosome-binding factor A [Brucella ceti M490/95/1]
gi|294851391|ref|ZP_06792064.1| ribosome-binding factor A [Brucella sp. NVSL 07-0026]
gi|306839944|ref|ZP_07472738.1| ribosome-binding factor A [Brucella sp. NF 2653]
gi|306843583|ref|ZP_07476184.1| ribosome-binding factor A [Brucella sp. BO1]
gi|29427805|sp|Q8FXT1|RBFA_BRUSU RecName: Full=Ribosome-binding factor A
gi|75496017|sp|Q57A99|RBFA_BRUAB RecName: Full=Ribosome-binding factor A
gi|123547259|sp|Q2YQR6|RBFA_BRUA2 RecName: Full=Ribosome-binding factor A
gi|172048298|sp|A5VTB3|RBFA_BRUO2 RecName: Full=Ribosome-binding factor A
gi|189039529|sp|A9M9Z5|RBFA_BRUC2 RecName: Full=Ribosome-binding factor A
gi|238689419|sp|B2S9F7|RBFA_BRUA1 RecName: Full=Ribosome-binding factor A
gi|23349055|gb|AAN31056.1| ribosome-binding factor A [Brucella suis 1330]
gi|62197135|gb|AAX75435.1| RbfA, ribosome-binding factor A [Brucella abortus bv. 1 str. 9-941]
gi|82617013|emb|CAJ12122.1| Ribosome-binding factor A [Brucella melitensis biovar Abortus 2308]
gi|161336885|gb|ABX63190.1| ribosome-binding factor A [Brucella canis ATCC 23365]
gi|189020787|gb|ACD73509.1| Ribosome-binding factor A [Brucella abortus S19]
gi|256000724|gb|ACU49123.1| ribosome-binding factor A [Brucella microti CCM 4915]
gi|260096373|gb|EEW80249.1| ribosome-binding factor A [Brucella abortus NCTC 8038]
gi|260156885|gb|EEW91965.1| ribosome-binding factor A [Brucella suis bv. 4 str. 40]
gi|260669378|gb|EEX56318.1| ribosome-binding factor A [Brucella abortus bv. 4 str. 292]
gi|260671217|gb|EEX58038.1| ribosome-binding factor A [Brucella abortus bv. 2 str. 86/8/59]
gi|260675945|gb|EEX62766.1| ribosome-binding factor A [Brucella abortus bv. 6 str. 870]
gi|260874390|gb|EEX81459.1| ribosome-binding factor A [Brucella abortus bv. 9 str. C68]
gi|260916719|gb|EEX83580.1| ribosome-binding factor A [Brucella abortus bv. 3 str. Tulya]
gi|260919796|gb|EEX86449.1| ribosome-binding factor A [Brucella ceti B1/94]
gi|261295863|gb|EEX99359.1| ribosome-binding factor A [Brucella pinnipedialis B2/94]
gi|261303827|gb|EEY07324.1| ribosome-binding factor A [Brucella pinnipedialis M163/99/10]
gi|261739081|gb|EEY27077.1| ribosome-binding factor A [Brucella sp. F5/99]
gi|261741058|gb|EEY28984.1| ribosome-binding factor A [Brucella suis bv. 5 str. 513]
gi|261745623|gb|EEY33549.1| ribosome-binding factor A [Brucella suis bv. 3 str. 686]
gi|262551641|gb|EEZ07631.1| ribosome-binding factor A [Brucella ceti M490/95/1]
gi|264659909|gb|EEZ30170.1| ribosome-binding factor A [Brucella pinnipedialis M292/94/1]
gi|264661753|gb|EEZ32014.1| ribosome-binding factor A [Brucella sp. 83/13]
gi|294819980|gb|EFG36979.1| ribosome-binding factor A [Brucella sp. NVSL 07-0026]
gi|306276274|gb|EFM57974.1| ribosome-binding factor A [Brucella sp. BO1]
gi|306404908|gb|EFM61193.1| ribosome-binding factor A [Brucella sp. NF 2653]
Length = 150
Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats.
Identities = 57/120 (47%), Positives = 78/120 (65%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
S+R LRVGE+VR AL V+ E +D LI R VIS+SEV MS DL++AT +I+ P
Sbjct: 14 SQRQLRVGEQVRHALAQVLQRGEIRDDLIERTVISVSEVRMSPDLKIATCFITPLGSADP 73
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALEK 128
VI AL + KFIRGR+ SL ++Y+PE RFR DTS ++ K++AL+ P++ L
Sbjct: 74 QAVIKALASHAKFIRGRVAPSLAQMKYMPEFRFRPDTSFDNFSKIDALLRSPEVARDLSH 133
>gi|17988247|ref|NP_540881.1| ribosome-binding factor A [Brucella melitensis bv. 1 str. 16M]
gi|17984014|gb|AAL53145.1| ribosome-binding factor a [Brucella melitensis bv. 1 str. 16M]
Length = 171
Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats.
Identities = 57/120 (47%), Positives = 78/120 (65%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
S+R LRVGE+VR AL V+ E +D LI R VIS+SEV MS DL++AT +I+ P
Sbjct: 35 SQRQLRVGEQVRHALAQVLQRGEIRDDLIERTVISVSEVRMSPDLKIATCFITPLGSADP 94
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALEK 128
VI AL + KFIRGR+ SL ++Y+PE RFR DTS ++ K++AL+ P++ L
Sbjct: 95 QAVIKALASHAKFIRGRVAPSLAQMKYMPEFRFRPDTSFDNFSKIDALLRFPEVARDLSH 154
>gi|254713434|ref|ZP_05175245.1| ribosome-binding factor A [Brucella ceti M644/93/1]
gi|254716209|ref|ZP_05178020.1| ribosome-binding factor A [Brucella ceti M13/05/1]
gi|261217983|ref|ZP_05932264.1| ribosome-binding factor A [Brucella ceti M13/05/1]
gi|261321167|ref|ZP_05960364.1| ribosome-binding factor A [Brucella ceti M644/93/1]
gi|260923072|gb|EEX89640.1| ribosome-binding factor A [Brucella ceti M13/05/1]
gi|261293857|gb|EEX97353.1| ribosome-binding factor A [Brucella ceti M644/93/1]
Length = 150
Score = 168 bits (428), Expect = 1e-40, Method: Composition-based stats.
Identities = 57/120 (47%), Positives = 78/120 (65%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
S+R LRVGE+VR AL V+ E +D LI R VIS+SEV MS DL++AT +I+ P
Sbjct: 14 SQRQLRVGEQVRHALAQVLQRGEIRDDLIERTVISVSEVRMSPDLKIATCFITPLGSADP 73
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALEK 128
VI AL + KFIRGR+ SL ++Y+PE RFR DTS ++ K++AL+ P++ L
Sbjct: 74 QAVIKALASHAKFIRGRVAPSLAQMKYMPEFRFRPDTSFDNFSKIDALLRSPEVARDLSH 133
>gi|239833214|ref|ZP_04681543.1| ribosome-binding factor A [Ochrobactrum intermedium LMG 3301]
gi|239825481|gb|EEQ97049.1| ribosome-binding factor A [Ochrobactrum intermedium LMG 3301]
Length = 171
Score = 168 bits (428), Expect = 2e-40, Method: Composition-based stats.
Identities = 58/118 (49%), Positives = 79/118 (66%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
S+R LRVGE+VR AL V+ E +D LI+R VIS+SEV MS DL++AT +I+ D
Sbjct: 35 SQRQLRVGEQVRHALAQVLQRGEIRDDLIARTVISVSEVRMSPDLKIATCFITPLGDADT 94
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVAL 126
VI AL N KFIRGR+ SL ++Y+PE RFR DTS ++ K++AL+ P++ L
Sbjct: 95 QAVIKALAANAKFIRGRMAPSLSQMKYMPEFRFRADTSFDNFSKIDALLRSPEVARDL 152
>gi|163844179|ref|YP_001628584.1| ribosome-binding factor A [Brucella suis ATCC 23445]
gi|189039530|sp|B0CK12|RBFA_BRUSI RecName: Full=Ribosome-binding factor A
gi|163674902|gb|ABY39013.1| ribosome-binding factor A [Brucella suis ATCC 23445]
Length = 150
Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats.
Identities = 56/120 (46%), Positives = 77/120 (64%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
S+R LRVGE+VR L V+ E +D LI R VIS+SEV MS DL++AT +I+ P
Sbjct: 14 SQRQLRVGEQVRHTLAQVLQRGEIRDDLIERTVISVSEVRMSPDLKIATCFITPLGSADP 73
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALEK 128
VI AL + KFIRGR+ SL ++Y+PE RFR DTS ++ K++AL+ P++ L
Sbjct: 74 QAVIKALASHAKFIRGRVAPSLAQMKYMPEFRFRPDTSFDNFSKIDALLRSPEVARDLSH 133
>gi|15887440|ref|NP_353121.1| ribosome-binding factor A [Agrobacterium tumefaciens str. C58]
gi|22096033|sp|Q8UJ52|RBFA_AGRT5 RecName: Full=Ribosome-binding factor A
gi|15154953|gb|AAK85906.1| ribosome-binding factor A [Agrobacterium tumefaciens str. C58]
Length = 138
Score = 167 bits (425), Expect = 3e-40, Method: Composition-based stats.
Identities = 59/125 (47%), Positives = 83/125 (66%)
Query: 2 KNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS 61
K + S+R LRVGE+VR+AL ++ E +D LI VISISEV MS DL++AT Y++
Sbjct: 3 KATSSAPSQRMLRVGEQVRAALTQILQRGEVRDDLIEGTVISISEVRMSPDLKIATAYVT 62
Query: 62 LPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+ISALN + KF+RGR+G LR ++Y+PELRFR DTS +Y K++AL+ P+
Sbjct: 63 PLGVADHTDIISALNRHAKFMRGRLGPQLRQMKYMPELRFRDDTSFDNYQKIDALLRSPE 122
Query: 122 IPVAL 126
+ L
Sbjct: 123 VQRDL 127
>gi|325291530|ref|YP_004277394.1| Ribosome-binding factor A [Agrobacterium sp. H13-3]
gi|325059383|gb|ADY63074.1| Ribosome-binding factor A [Agrobacterium sp. H13-3]
Length = 138
Score = 167 bits (425), Expect = 3e-40, Method: Composition-based stats.
Identities = 58/125 (46%), Positives = 83/125 (66%)
Query: 2 KNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS 61
K + S+R LRVGE+VR+AL ++ E +D LI VISISEV MS DL++AT Y++
Sbjct: 3 KATSSAPSQRMLRVGEQVRAALTQILQRGEVRDDLIEGTVISISEVRMSPDLKIATAYVT 62
Query: 62 LPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+I+ALN + KF+RGR+G LR ++Y+PELRFR DTS +Y K++AL+ P+
Sbjct: 63 PLGVADHTDIITALNRHAKFMRGRLGPQLRQMKYMPELRFRDDTSFDNYQKIDALLRSPE 122
Query: 122 IPVAL 126
+ L
Sbjct: 123 VQRDL 127
>gi|225853591|ref|YP_002733824.1| ribosome-binding factor A [Brucella melitensis ATCC 23457]
gi|256045769|ref|ZP_05448647.1| ribosome-binding factor A [Brucella melitensis bv. 1 str. Rev.1]
gi|256112489|ref|ZP_05453410.1| ribosome-binding factor A [Brucella melitensis bv. 3 str. Ether]
gi|256264966|ref|ZP_05467498.1| ribosome-binding factor A [Brucella melitensis bv. 2 str. 63/9]
gi|260563065|ref|ZP_05833551.1| ribosome-binding factor A [Brucella melitensis bv. 1 str. 16M]
gi|265992186|ref|ZP_06104743.1| ribosome-binding factor A [Brucella melitensis bv. 1 str. Rev.1]
gi|265993925|ref|ZP_06106482.1| ribosome-binding factor A [Brucella melitensis bv. 3 str. Ether]
gi|20978585|sp|Q8YEB4|RBFA_BRUME RecName: Full=Ribosome-binding factor A
gi|254789736|sp|C0RG48|RBFA_BRUMB RecName: Full=Ribosome-binding factor A
gi|225641956|gb|ACO01870.1| ribosome-binding factor A [Brucella melitensis ATCC 23457]
gi|260153081|gb|EEW88173.1| ribosome-binding factor A [Brucella melitensis bv. 1 str. 16M]
gi|262764906|gb|EEZ10827.1| ribosome-binding factor A [Brucella melitensis bv. 3 str. Ether]
gi|263003252|gb|EEZ15545.1| ribosome-binding factor A [Brucella melitensis bv. 1 str. Rev.1]
gi|263095449|gb|EEZ19050.1| ribosome-binding factor A [Brucella melitensis bv. 2 str. 63/9]
Length = 150
Score = 167 bits (425), Expect = 4e-40, Method: Composition-based stats.
Identities = 57/120 (47%), Positives = 78/120 (65%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
S+R LRVGE+VR AL V+ E +D LI R VIS+SEV MS DL++AT +I+ P
Sbjct: 14 SQRQLRVGEQVRHALAQVLQRGEIRDDLIERTVISVSEVRMSPDLKIATCFITPLGSADP 73
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALEK 128
VI AL + KFIRGR+ SL ++Y+PE RFR DTS ++ K++AL+ P++ L
Sbjct: 74 QAVIKALASHAKFIRGRVAPSLAQMKYMPEFRFRPDTSFDNFSKIDALLRFPEVARDLSH 133
>gi|256060126|ref|ZP_05450308.1| ribosome-binding factor A [Brucella neotomae 5K33]
gi|261324103|ref|ZP_05963300.1| ribosome-binding factor A [Brucella neotomae 5K33]
gi|261300083|gb|EEY03580.1| ribosome-binding factor A [Brucella neotomae 5K33]
Length = 150
Score = 167 bits (423), Expect = 7e-40, Method: Composition-based stats.
Identities = 57/120 (47%), Positives = 78/120 (65%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
S+R LRVGE+VR AL V+ E +D LI R VIS+SEV MS DL++AT +I+ P
Sbjct: 14 SQRQLRVGEQVRHALAQVLQRGEIRDDLIERIVISVSEVRMSPDLKIATCFIAPLGSADP 73
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALEK 128
VI AL + KFIRGR+ SL ++Y+PE RFR DTS ++ K++AL+ P++ L
Sbjct: 74 QAVIKALASHAKFIRGRVAPSLAQMKYMPEFRFRPDTSFDNFSKIDALLRSPEVARDLSH 133
>gi|114706047|ref|ZP_01438950.1| ribosome-binding factor A [Fulvimarina pelagi HTCC2506]
gi|114538893|gb|EAU42014.1| ribosome-binding factor A [Fulvimarina pelagi HTCC2506]
Length = 140
Score = 166 bits (422), Expect = 7e-40, Method: Composition-based stats.
Identities = 53/126 (42%), Positives = 80/126 (63%)
Query: 3 NKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL 62
N S+R L VGE+VR AL V+ E +D L+ R V+S+SEV MS DL++AT Y+++
Sbjct: 5 KPNAGPSQRQLSVGEKVRHALTEVMQRGEIRDPLLERAVVSVSEVRMSPDLKIATAYVTV 64
Query: 63 PLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
I ALN + KFIRGR+ SL+ ++Y+PE+RFR DTS ++ +++AL+ P++
Sbjct: 65 LGQEDMQPFIKALNDHAKFIRGRVTPSLKQMKYMPEIRFREDTSFDNFARIDALLKSPEV 124
Query: 123 PVALEK 128
L
Sbjct: 125 QQDLNH 130
>gi|15963993|ref|NP_384346.1| ribosome-binding factor A [Sinorhizobium meliloti 1021]
gi|307306405|ref|ZP_07586149.1| ribosome-binding factor A [Sinorhizobium meliloti BL225C]
gi|307319292|ref|ZP_07598721.1| ribosome-binding factor A [Sinorhizobium meliloti AK83]
gi|20978620|sp|Q92SW3|RBFA_RHIME RecName: Full=Ribosome-binding factor A
gi|15073169|emb|CAC41677.1| Probable ribosome-binding factor A, rRNA processing protein
[Sinorhizobium meliloti 1021]
gi|306895128|gb|EFN25885.1| ribosome-binding factor A [Sinorhizobium meliloti AK83]
gi|306902247|gb|EFN32844.1| ribosome-binding factor A [Sinorhizobium meliloti BL225C]
Length = 135
Score = 166 bits (422), Expect = 8e-40, Method: Composition-based stats.
Identities = 57/127 (44%), Positives = 84/127 (66%)
Query: 2 KNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS 61
K+ + S+R LRVGE+VR+A+ V+ E D LI VISISEV MS DL++AT Y++
Sbjct: 3 KSTSSAPSQRMLRVGEQVRAAITQVLQRGEVLDPLIENTVISISEVRMSPDLKIATAYVT 62
Query: 62 LPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
VI ALN + KFIRGR+G LR ++Y+P++RFR DTS +Y K+++L+ P+
Sbjct: 63 PLGVADHAAVIEALNKHAKFIRGRLGPQLRQMKYMPDVRFRDDTSFDNYQKIDSLLRSPE 122
Query: 122 IPVALEK 128
+ L++
Sbjct: 123 VSRDLDR 129
>gi|153008082|ref|YP_001369297.1| ribosome-binding factor A [Ochrobactrum anthropi ATCC 49188]
gi|166219382|sp|A6WWW4|RBFA_OCHA4 RecName: Full=Ribosome-binding factor A
gi|151559970|gb|ABS13468.1| ribosome-binding factor A [Ochrobactrum anthropi ATCC 49188]
Length = 150
Score = 166 bits (422), Expect = 8e-40, Method: Composition-based stats.
Identities = 56/118 (47%), Positives = 78/118 (66%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
S+R LRVGE+VR AL V+ E +D LI+ VIS+SEV MS DL++AT +I+ +
Sbjct: 14 SQRQLRVGEQVRHALAQVLQRGEIRDDLIAHTVISVSEVRMSPDLKIATCFITPLGNADT 73
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVAL 126
VI AL N KFIRGR+ SL ++Y+PE RFR DTS ++ K++AL+ P++ L
Sbjct: 74 QAVIKALAANAKFIRGRMAPSLSQMKYMPEFRFRADTSFDNFSKIDALLRSPEVARDL 131
>gi|227824072|ref|YP_002828045.1| ribosome-binding factor A [Sinorhizobium fredii NGR234]
gi|254789759|sp|C3MC67|RBFA_RHISN RecName: Full=Ribosome-binding factor A
gi|227343074|gb|ACP27292.1| ribosome-binding factor A [Sinorhizobium fredii NGR234]
Length = 135
Score = 165 bits (420), Expect = 1e-39, Method: Composition-based stats.
Identities = 57/126 (45%), Positives = 85/126 (67%)
Query: 2 KNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS 61
++ + S+R LRVGE+VR+A+ V+ E +D LI + VISISEV MS DL++AT Y++
Sbjct: 3 RSTSSAPSQRMLRVGEQVRAAITQVLQRGEVRDPLIEKTVISISEVRMSPDLKIATAYVT 62
Query: 62 LPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
VI ALN + KFIRGR+G LR ++Y+P++RFR DTS +Y K++AL+ P+
Sbjct: 63 PLGVADHAAVIEALNKHAKFIRGRLGPQLRQMKYMPDVRFRDDTSFDNYQKIDALLRSPE 122
Query: 122 IPVALE 127
+ L+
Sbjct: 123 VSRDLD 128
>gi|298293851|ref|YP_003695790.1| ribosome-binding factor A [Starkeya novella DSM 506]
gi|296930362|gb|ADH91171.1| ribosome-binding factor A [Starkeya novella DSM 506]
Length = 141
Score = 165 bits (420), Expect = 1e-39, Method: Composition-based stats.
Identities = 51/131 (38%), Positives = 76/131 (58%), Gaps = 4/131 (3%)
Query: 1 MKNK---NPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVAT 57
MKN+ S+R LRVGE VR AL ++ + D +S+ +I++ EV MS DL++AT
Sbjct: 1 MKNRASSGSGPSQRQLRVGELVRHALAEILARGDLPDPALSKVMITVPEVRMSPDLKIAT 60
Query: 58 VYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
Y+ I AL N K +RG I R + L++VPELRFR DTS + +++AL+
Sbjct: 61 CYVMPLGGKDHKAAIDALATNAKPLRGEIARRV-ELKFVPELRFRIDTSFEEGDRIDALL 119
Query: 118 CLPKIPVALEK 128
P++ L+K
Sbjct: 120 RSPQVQRDLDK 130
>gi|260461979|ref|ZP_05810224.1| ribosome-binding factor A [Mesorhizobium opportunistum WSM2075]
gi|259032226|gb|EEW33492.1| ribosome-binding factor A [Mesorhizobium opportunistum WSM2075]
Length = 156
Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats.
Identities = 51/126 (40%), Positives = 79/126 (62%)
Query: 2 KNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS 61
++ S+R LRVGE+VR AL + + D LI V+S+SEV MS DL++AT ++S
Sbjct: 3 RSTTSGPSQRMLRVGEQVRHALSETLQRGDIIDPLIENSVVSVSEVRMSPDLKIATAFVS 62
Query: 62 LPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+ VI ALN + KF+RGR+ +LR ++Y+PE RFR DTS ++ ++N L+ P+
Sbjct: 63 PLGAKDAEAVIEALNKHAKFVRGRVSGALRQMKYMPEFRFRLDTSFDNFARINDLLKSPE 122
Query: 122 IPVALE 127
+ L+
Sbjct: 123 VARDLD 128
>gi|319406544|emb|CBI80186.1| Ribosome-binding factor A [Bartonella sp. 1-1C]
Length = 137
Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats.
Identities = 54/127 (42%), Positives = 78/127 (61%), Gaps = 3/127 (2%)
Query: 4 KNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP 63
KNP S+R LRVGE+VR A+ ++ D + VIS+SEV MS DL++AT ++S
Sbjct: 2 KNPHPSQRQLRVGEQVRHAIAHILQRGILLDDIFKNIVISVSEVRMSSDLKIATCFVSFL 61
Query: 64 LDVSP---DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
V D +ISALN N +FIRG I LR ++Y+P LRFR+D S ++ K++ L+ P
Sbjct: 62 NTVDQTSHDAIISALNKNSRFIRGAISHQLRQMKYMPALRFRFDNSFDNFAKIDTLLRSP 121
Query: 121 KIPVALE 127
++ L
Sbjct: 122 EVARDLH 128
>gi|150398628|ref|YP_001329095.1| ribosome-binding factor A [Sinorhizobium medicae WSM419]
gi|166219408|sp|A6UF30|RBFA_SINMW RecName: Full=Ribosome-binding factor A
gi|150030143|gb|ABR62260.1| ribosome-binding factor A [Sinorhizobium medicae WSM419]
Length = 134
Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats.
Identities = 56/127 (44%), Positives = 86/127 (67%)
Query: 2 KNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS 61
K+ + S+R LRVGE+VR+A+ V+ + +D LI VISISEV MS DL++AT Y++
Sbjct: 3 KSTSSAPSQRMLRVGEQVRAAITQVLQRGDVRDPLIESTVISISEVRMSPDLKLATAYVT 62
Query: 62 LPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
VI ALN + KFIRGR+G LR ++Y+P++RFR DTS ++Y K+++L+ P+
Sbjct: 63 PLGVADHAAVIEALNKHAKFIRGRLGPHLRQMKYMPDVRFRDDTSFENYQKIDSLLRSPE 122
Query: 122 IPVALEK 128
+ L++
Sbjct: 123 VSRDLDR 129
>gi|319779768|ref|YP_004139244.1| ribosome-binding factor A [Mesorhizobium ciceri biovar biserrulae
WSM1271]
gi|317165656|gb|ADV09194.1| ribosome-binding factor A [Mesorhizobium ciceri biovar biserrulae
WSM1271]
Length = 146
Score = 163 bits (414), Expect = 7e-39, Method: Composition-based stats.
Identities = 50/125 (40%), Positives = 76/125 (60%)
Query: 2 KNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS 61
+ S+R LRV E+VR AL + E D LI V+S+SEV MS DL+VAT ++S
Sbjct: 3 RPTASSPSQRMLRVAEQVRHALSETLQRGEIIDPLIENTVVSVSEVRMSPDLKVATAFVS 62
Query: 62 LPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
D V+ ALN + KF+RGR+ +LR ++++PE RF+ DTS ++ ++N L+ P+
Sbjct: 63 PLGAKDTDAVVEALNKHAKFVRGRVSGALRQMKFMPEFRFKLDTSFDNFARINDLLKSPE 122
Query: 122 IPVAL 126
+ L
Sbjct: 123 VARDL 127
>gi|315122008|ref|YP_004062497.1| ribosome-binding factor A [Candidatus Liberibacter solanacearum
CLso-ZC1]
gi|313495410|gb|ADR52009.1| ribosome-binding factor A [Candidatus Liberibacter solanacearum
CLso-ZC1]
Length = 132
Score = 163 bits (414), Expect = 8e-39, Method: Composition-based stats.
Identities = 98/126 (77%), Positives = 109/126 (86%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
MKNK+ SRRALRVGEEVRSALMWVILNNEFQD LI RD+ISISEVCMSVDLRVATVY+
Sbjct: 1 MKNKSSVPSRRALRVGEEVRSALMWVILNNEFQDNLIHRDIISISEVCMSVDLRVATVYV 60
Query: 61 SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
SLP DVSPD VI AL CN KF+RGRI +SLRNL+Y+PELRFRYDTSLQ+YWK++ LMC
Sbjct: 61 SLPPDVSPDVVIDALKCNNKFLRGRISQSLRNLKYIPELRFRYDTSLQNYWKIDTLMCSS 120
Query: 121 KIPVAL 126
K+ L
Sbjct: 121 KVVRDL 126
>gi|49475026|ref|YP_033067.1| ribosome-binding factor A [Bartonella henselae str. Houston-1]
gi|61215011|sp|Q6G4W8|RBFA_BARHE RecName: Full=Ribosome-binding factor A
gi|49237831|emb|CAF27026.1| Ribosomal-binding factor A [Bartonella henselae str. Houston-1]
Length = 135
Score = 163 bits (414), Expect = 8e-39, Method: Composition-based stats.
Identities = 52/128 (40%), Positives = 79/128 (61%), Gaps = 3/128 (2%)
Query: 4 KNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP 63
KN + S+R LRVGE+VR A+ ++ D L+ VIS+ EV MS DL++A ++S
Sbjct: 2 KNAEPSQRQLRVGEQVRHAVAHILQQGILLDNLLKNMVISVVEVRMSPDLKIAICFVSPL 61
Query: 64 L---DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
+ S V++ALN + +FIRG I SLR ++Y+PELRFR D S ++ K++AL+ P
Sbjct: 62 STVHNASRADVVNALNKHSRFIRGEISHSLRQMKYMPELRFRLDNSFDNFSKIDALLRSP 121
Query: 121 KIPVALEK 128
++ L
Sbjct: 122 EVARDLHH 129
>gi|163867510|ref|YP_001608709.1| ribosome-binding factor A [Bartonella tribocorum CIP 105476]
gi|189039527|sp|A9IMT2|RBFA_BART1 RecName: Full=Ribosome-binding factor A
gi|161017156|emb|CAK00714.1| Ribosome-binding factor A [Bartonella tribocorum CIP 105476]
Length = 135
Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats.
Identities = 50/131 (38%), Positives = 80/131 (61%), Gaps = 5/131 (3%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
MKN P S+R LRV E+VR A+ ++ D ++ VIS+SEV +S DL++AT ++
Sbjct: 1 MKNAGP--SQRQLRVAEQVRHAVAHILQRGILLDDVLKDIVISVSEVRISPDLKIATCFV 58
Query: 61 SLPL---DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
S + S V++ LN + +F+RG I +LR ++Y+PELRFR D S ++ K++AL+
Sbjct: 59 SPLSTLKNTSHTDVVNTLNKHSRFLRGEISHALRQMKYMPELRFRLDNSFDNFSKIDALL 118
Query: 118 CLPKIPVALEK 128
P++ L
Sbjct: 119 RSPEVARDLHH 129
>gi|90422005|ref|YP_530375.1| ribosome-binding factor A [Rhodopseudomonas palustris BisB18]
gi|122477505|sp|Q21C30|RBFA_RHOPB RecName: Full=Ribosome-binding factor A
gi|90104019|gb|ABD86056.1| ribosome-binding factor A [Rhodopseudomonas palustris BisB18]
Length = 137
Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats.
Identities = 44/128 (34%), Positives = 70/128 (54%), Gaps = 1/128 (0%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
K ++P S+R LRVGE VR A+ ++ D ++ +I++ EV MS DL++ATVY+
Sbjct: 6 QKAQSPGGSQRQLRVGEIVRHAVAELLSQGGVHDPVLEGHLITVPEVRMSPDLKLATVYV 65
Query: 61 SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
D V+ AL N FIR + R + NL++ P+LRFR D ++ L+ P
Sbjct: 66 MPLGGRDTDVVLKALAANKPFIRTAVARRV-NLKFAPDLRFRIDERFDEAERIEKLLRTP 124
Query: 121 KIPVALEK 128
+ L++
Sbjct: 125 GVQKDLQQ 132
>gi|299133372|ref|ZP_07026567.1| ribosome-binding factor A [Afipia sp. 1NLS2]
gi|298593509|gb|EFI53709.1| ribosome-binding factor A [Afipia sp. 1NLS2]
Length = 140
Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats.
Identities = 43/126 (34%), Positives = 67/126 (53%), Gaps = 1/126 (0%)
Query: 3 NKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL 62
+ S+R LRVGE +R A+ ++ D +S +I++ EV MS DL++ATVY+
Sbjct: 11 SGPAGGSQRQLRVGELIRHAISDILSQGGVHDDTLSGHIITVPEVRMSPDLKLATVYVMP 70
Query: 63 PLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
D VI+AL N KF+RG + + NL++ P+LRFR D ++ L+ P +
Sbjct: 71 LGGHDTDAVIAALAHNKKFLRGEVAHRV-NLKFAPDLRFRADERFDEAERIEKLLRTPAV 129
Query: 123 PVALEK 128
L
Sbjct: 130 QKDLNH 135
>gi|222147150|ref|YP_002548107.1| ribosome-binding factor A [Agrobacterium vitis S4]
gi|254789726|sp|B9JYK7|RBFA_AGRVS RecName: Full=Ribosome-binding factor A
gi|221734140|gb|ACM35103.1| ribosome-binding factor A [Agrobacterium vitis S4]
Length = 137
Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats.
Identities = 63/125 (50%), Positives = 85/125 (68%)
Query: 2 KNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS 61
K N S+R LRVGE+VR+A+ V+ E +D LI + VISISEV MS DL+VAT Y+S
Sbjct: 3 KPTNSAPSQRMLRVGEQVRAAITQVLQRGEVRDDLIEKTVISISEVRMSTDLKVATAYVS 62
Query: 62 LPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
D VI+ALN + K+IRGRIG LR ++Y+PE+RFR DTS +Y K++AL+ P+
Sbjct: 63 PLGVSDHDTVIAALNRHAKYIRGRIGGQLRQMKYMPEVRFRDDTSFDNYQKIDALLRSPE 122
Query: 122 IPVAL 126
+ L
Sbjct: 123 VARDL 127
>gi|115522224|ref|YP_779135.1| ribosome-binding factor A [Rhodopseudomonas palustris BisA53]
gi|122298068|sp|Q07V79|RBFA_RHOP5 RecName: Full=Ribosome-binding factor A
gi|115516171|gb|ABJ04155.1| ribosome-binding factor A [Rhodopseudomonas palustris BisA53]
Length = 138
Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats.
Identities = 43/128 (33%), Positives = 71/128 (55%), Gaps = 1/128 (0%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
KN + S+R LRVGE VR A+ ++ D ++ ++++ EV MS DL++AT+Y+
Sbjct: 6 QKNSGREASQRQLRVGESVRHAIAEILAQGGVHDPVLEGHLVTVPEVRMSPDLKLATIYV 65
Query: 61 SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
+ V+ AL+ N KF+RG + R + NL++ PELRFR D ++ L+ P
Sbjct: 66 MPLGGRDTELVLKALDHNKKFLRGEVSRRV-NLKFAPELRFRADDRFDEAERIEKLLRTP 124
Query: 121 KIPVALEK 128
+ L+
Sbjct: 125 AVQRDLQH 132
>gi|319408010|emb|CBI81664.1| Ribosome-binding factor A [Bartonella schoenbuchensis R1]
Length = 135
Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats.
Identities = 54/129 (41%), Positives = 81/129 (62%), Gaps = 5/129 (3%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
MKN P S+R LRVGE+VR L ++ + D ++ VISISEV MS DL++AT ++
Sbjct: 1 MKNTGP--SQRQLRVGEQVRHVLAHILQRDILLDDVLKGVVISISEVRMSADLKIATCFV 58
Query: 61 SLPL---DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
S D+S +I LN + +FIR I LR ++Y+PELRFR+D+S ++ K++AL+
Sbjct: 59 SPLSTIHDISHTAIIEVLNKHSRFIRKEISHQLRQMKYMPELRFRFDSSFDNFSKIDALL 118
Query: 118 CLPKIPVAL 126
P++ L
Sbjct: 119 HSPEVARDL 127
>gi|240849880|ref|YP_002971268.1| ribosomal-binding factor A [Bartonella grahamii as4aup]
gi|240267003|gb|ACS50591.1| ribosomal-binding factor A [Bartonella grahamii as4aup]
Length = 135
Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats.
Identities = 51/128 (39%), Positives = 80/128 (62%), Gaps = 3/128 (2%)
Query: 4 KNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP 63
KN K S+R LRV E+VR A+ ++ + D ++ VIS+SEV MS DL++AT ++S
Sbjct: 2 KNAKPSQRQLRVAEQVRHAIAHILQRDILLDDILKDIVISVSEVRMSPDLKIATCFVSPL 61
Query: 64 L---DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
+VS V+ LN + +F+RG I +LR ++Y+PELRFR D S ++ K++AL+ P
Sbjct: 62 STLKNVSHTDVVDTLNKHSRFLRGEISHALRQMKYMPELRFRLDNSFDNFSKIDALLRSP 121
Query: 121 KIPVALEK 128
++ L
Sbjct: 122 EVARDLHH 129
>gi|39933512|ref|NP_945788.1| ribosome-binding factor A [Rhodopseudomonas palustris CGA009]
gi|192288870|ref|YP_001989475.1| ribosome-binding factor A [Rhodopseudomonas palustris TIE-1]
gi|61215050|sp|Q6NCN6|RBFA_RHOPA RecName: Full=Ribosome-binding factor A
gi|229568643|sp|B3QAB3|RBFA_RHOPT RecName: Full=Ribosome-binding factor A
gi|39647358|emb|CAE25879.1| putative ribosome-binding factor A [Rhodopseudomonas palustris
CGA009]
gi|192282619|gb|ACE98999.1| ribosome-binding factor A [Rhodopseudomonas palustris TIE-1]
Length = 137
Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats.
Identities = 42/127 (33%), Positives = 69/127 (54%), Gaps = 1/127 (0%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
K+ P S R+LRVGE +R A+ ++ D ++ ++++ EV MS DL++AT+Y+
Sbjct: 6 QKSSPPGGSTRSLRVGELIRHAVAEILAQGGVHDPVLESHLVTVPEVRMSPDLKLATIYV 65
Query: 61 SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
VI AL + +F+RG I + NL++ PELRFR D +++ L+ P
Sbjct: 66 MPLGGRDEKLVIDALEHHKRFLRGEIAHRV-NLKFAPELRFRIDERFAEAERIDKLLRSP 124
Query: 121 KIPVALE 127
+ LE
Sbjct: 125 AVQKDLE 131
>gi|218662345|ref|ZP_03518275.1| ribosome-binding factor A [Rhizobium etli IE4771]
gi|218673741|ref|ZP_03523410.1| ribosome-binding factor A [Rhizobium etli GR56]
Length = 134
Score = 160 bits (406), Expect = 6e-38, Method: Composition-based stats.
Identities = 56/126 (44%), Positives = 82/126 (65%)
Query: 2 KNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS 61
+ + S+R LRVGE+VR+A+ V+ E +D +I VISISEV MS DL++AT Y++
Sbjct: 3 RPTSSAPSQRMLRVGEQVRAAITQVLQRGEVRDDVIEATVISISEVRMSPDLKIATAYVT 62
Query: 62 LPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
VI ALN + KFIRGR+G LR ++Y+PE+RFR DTS +Y K++ L+ P+
Sbjct: 63 PLGVSDHSIVIEALNRHAKFIRGRLGPQLRQMKYMPEVRFRDDTSFDNYKKIDELLRSPE 122
Query: 122 IPVALE 127
+ L+
Sbjct: 123 VSRDLD 128
>gi|190889784|ref|YP_001976326.1| ribosome binding factor A, rRNA processing protein [Rhizobium etli
CIAT 652]
gi|238692530|sp|B3PXE2|RBFA_RHIE6 RecName: Full=Ribosome-binding factor A
gi|190695063|gb|ACE89148.1| ribosome binding factor A, rRNA processing protein [Rhizobium etli
CIAT 652]
Length = 134
Score = 160 bits (405), Expect = 7e-38, Method: Composition-based stats.
Identities = 56/126 (44%), Positives = 82/126 (65%)
Query: 2 KNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS 61
+ + S+R LRVGE+VR+A+ V+ E +D +I VISISEV MS DL++AT Y++
Sbjct: 3 RPTSSAPSQRMLRVGEQVRAAITQVLQRGEVRDDIIEATVISISEVRMSPDLKIATAYVT 62
Query: 62 LPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
VI ALN + KFIRGR+G LR ++Y+PE+RFR DTS +Y K++ L+ P+
Sbjct: 63 PLGVSDHSIVIEALNRHAKFIRGRLGPQLRQMKYMPEVRFRDDTSFDNYKKIDELLRSPE 122
Query: 122 IPVALE 127
+ L+
Sbjct: 123 VSRDLD 128
>gi|49473869|ref|YP_031911.1| ribosome-binding factor A [Bartonella quintana str. Toulouse]
gi|61215005|sp|Q6G0P3|RBFA_BARQU RecName: Full=Ribosome-binding factor A
gi|49239372|emb|CAF25705.1| Ribosomal-binding factor A [Bartonella quintana str. Toulouse]
Length = 135
Score = 160 bits (405), Expect = 7e-38, Method: Composition-based stats.
Identities = 55/131 (41%), Positives = 83/131 (63%), Gaps = 5/131 (3%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
MKN P S+R LRVGE+VR A+ + + D L+ VIS++EV MS DL++AT ++
Sbjct: 1 MKNAGP--SQRQLRVGEQVRHAVAYKLQQGILLDDLLKNIVISVAEVRMSPDLKIATCFV 58
Query: 61 SLPL---DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
S +VSP V++ LN + +FIR I SLR ++Y+PELRFR DTS ++ K+++L+
Sbjct: 59 SSLSTLHNVSPTDVVNVLNKHSRFIRREISYSLRQMKYMPELRFRLDTSFDNFSKIDSLL 118
Query: 118 CLPKIPVALEK 128
P++ L
Sbjct: 119 RSPEVARDLHH 129
>gi|218461916|ref|ZP_03502007.1| ribosome-binding factor A [Rhizobium etli Kim 5]
Length = 134
Score = 160 bits (405), Expect = 8e-38, Method: Composition-based stats.
Identities = 56/126 (44%), Positives = 82/126 (65%)
Query: 2 KNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS 61
+ + S+R LRVGE+VR+A+ V+ E +D +I VISISEV MS DL++AT Y++
Sbjct: 3 RPTSSAPSQRMLRVGEQVRAAITQVLQRGEVRDDIIEATVISISEVRMSPDLKIATAYVT 62
Query: 62 LPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
VI ALN + KFIRGR+G LR ++Y+PE+RFR DTS +Y K++ L+ P+
Sbjct: 63 PLGVSDHSIVIEALNRHAKFIRGRLGPQLRQMKYMPEVRFRDDTSFDNYKKIDELLRSPE 122
Query: 122 IPVALE 127
+ L+
Sbjct: 123 VSRDLD 128
>gi|319403628|emb|CBI77213.1| Ribosome-binding factor A [Bartonella rochalimae ATCC BAA-1498]
Length = 138
Score = 159 bits (404), Expect = 9e-38, Method: Composition-based stats.
Identities = 52/127 (40%), Positives = 76/127 (59%), Gaps = 3/127 (2%)
Query: 4 KNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP 63
KN S+R LRVGE+VR A+ ++ D VIS+SEV MS DL++AT ++S
Sbjct: 3 KNIHPSQRQLRVGEQVRHAIAHILQRGVLLDDTFKNIVISVSEVRMSSDLKIATCFVSFL 62
Query: 64 LDVSP---DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
V D ++SALN N +FIRG I LR ++Y+P LRFR+D S ++ K++ L+ P
Sbjct: 63 NTVDQTSHDAIVSALNKNSRFIRGAISHQLRQMKYMPALRFRFDNSFDNFAKIDTLLRSP 122
Query: 121 KIPVALE 127
++ L
Sbjct: 123 EVARDLH 129
>gi|13474630|ref|NP_106199.1| ribosome-binding factor A [Mesorhizobium loti MAFF303099]
gi|20978641|sp|Q98BI7|RBFA_RHILO RecName: Full=Ribosome-binding factor A
gi|14025384|dbj|BAB51985.1| ribosome-binding factor A [Mesorhizobium loti MAFF303099]
Length = 146
Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats.
Identities = 50/123 (40%), Positives = 75/123 (60%)
Query: 2 KNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS 61
+ S+R LRV E+VR AL + E D LI V+S+SEV MS DLRVAT ++S
Sbjct: 3 RPTTSSPSQRMLRVAEQVRHALSETLQRGEIIDPLIENTVVSVSEVRMSPDLRVATAFVS 62
Query: 62 LPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
D V+ ALN + KF+RGR+ +LR ++++PE RF+ DTS ++ ++N L+ P+
Sbjct: 63 PLGAKDTDAVVEALNKHAKFVRGRVSGALRQMKFMPEFRFKLDTSFDNFARINDLLKSPE 122
Query: 122 IPV 124
+
Sbjct: 123 VAR 125
>gi|218682086|ref|ZP_03529687.1| ribosome-binding factor A [Rhizobium etli CIAT 894]
Length = 134
Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats.
Identities = 56/126 (44%), Positives = 83/126 (65%)
Query: 2 KNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS 61
+ + S+R LRVGE+VR+A+ V+ E +D +I VISISEV MS DL++AT Y++
Sbjct: 3 RATSSAPSQRMLRVGEQVRAAITQVLQRGEVRDDVIEATVISISEVRMSPDLKIATAYVT 62
Query: 62 LPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
VI ALN + KFIRGR+G+ LR ++Y+PE+RFR DTS +Y K++ L+ P+
Sbjct: 63 PLGVSDHSIVIGALNRHAKFIRGRLGQQLRQMKYMPEVRFRDDTSFDNYKKIDELLRSPE 122
Query: 122 IPVALE 127
+ L+
Sbjct: 123 VRRDLD 128
>gi|182678032|ref|YP_001832178.1| ribosome-binding factor A [Beijerinckia indica subsp. indica ATCC
9039]
gi|238691234|sp|B2IIJ6|RBFA_BEII9 RecName: Full=Ribosome-binding factor A
gi|182633915|gb|ACB94689.1| ribosome-binding factor A [Beijerinckia indica subsp. indica ATCC
9039]
Length = 141
Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats.
Identities = 38/125 (30%), Positives = 70/125 (56%), Gaps = 1/125 (0%)
Query: 3 NKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL 62
+ S+R LRV E +R L ++ + D ++ VI++ +V MS DL++AT ++
Sbjct: 7 QQGGAPSQRMLRVAELIRHTLSDLLSRSIVNDPVLEGHVITVPDVRMSPDLKLATAFVMP 66
Query: 63 PLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
+ VI AL+ + KF+R I + + +LR+ P++RF+ D S K++AL+ P++
Sbjct: 67 LGGKDINSVIEALDRHKKFLRSEIAQRI-HLRFAPDIRFKADESFDYGDKIDALLASPQV 125
Query: 123 PVALE 127
L+
Sbjct: 126 RRDLD 130
>gi|116249890|ref|YP_765728.1| ribosome-binding factor A [Rhizobium leguminosarum bv. viciae 3841]
gi|166219398|sp|Q1MN40|RBFA_RHIL3 RecName: Full=Ribosome-binding factor A
gi|115254538|emb|CAK05612.1| putative ribosome-binding factor protein [Rhizobium leguminosarum
bv. viciae 3841]
Length = 134
Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats.
Identities = 53/126 (42%), Positives = 82/126 (65%)
Query: 2 KNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS 61
+ + S+R LR+GE+VR+A+ V+ E +D +I VIS+SEV MS DL++AT Y++
Sbjct: 3 RPTSSAPSQRMLRIGEQVRAAITQVLQRGEVRDDVIEATVISVSEVRMSPDLKIATAYVT 62
Query: 62 LPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
VI ALN + +FIRGR+G LR ++Y+PE+RFR DTS +Y K++ L+ P+
Sbjct: 63 PLGVSDHSIVIEALNRHARFIRGRLGPQLRQMKYMPEVRFRDDTSFDNYKKIDELLRSPE 122
Query: 122 IPVALE 127
+ L+
Sbjct: 123 VSRDLD 128
>gi|110636255|ref|YP_676463.1| ribosome-binding factor A [Mesorhizobium sp. BNC1]
gi|123057284|sp|Q11BC7|RBFA_MESSB RecName: Full=Ribosome-binding factor A
gi|110287239|gb|ABG65298.1| ribosome-binding factor A [Chelativorans sp. BNC1]
Length = 133
Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats.
Identities = 48/120 (40%), Positives = 80/120 (66%), Gaps = 1/120 (0%)
Query: 5 NPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL 64
+ S+R LRVGE+ R AL V+ + +D + VIS+SEV MS DL++ATV++S PL
Sbjct: 3 SSAPSQRQLRVGEQARHALSDVLQREDMRDPALEGAVISVSEVRMSPDLKIATVFVS-PL 61
Query: 65 DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPV 124
+ +I+ALN + ++IRGR+ +LR ++Y+PE RF DTS +++ K++ ++ P++
Sbjct: 62 SGDKEAIIAALNRHARYIRGRVSPALRQMKYMPEFRFHLDTSYENFEKIDRILRSPEVAR 121
>gi|197106896|ref|YP_002132273.1| ribosome-binding factor A [Phenylobacterium zucineum HLK1]
gi|238690151|sp|B4RC51|RBFA_PHEZH RecName: Full=Ribosome-binding factor A
gi|196480316|gb|ACG79844.1| ribosome-binding factor A [Phenylobacterium zucineum HLK1]
Length = 145
Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats.
Identities = 43/125 (34%), Positives = 70/125 (56%), Gaps = 1/125 (0%)
Query: 2 KNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS 61
+ S+R LR GE VR AL+ + E D +++ ++++EV +S DLR ATV++
Sbjct: 9 RRPPQGPSQRQLRAGELVRHALVEIFREEEINDPVLAGVSVTVTEVRVSPDLRHATVFVE 68
Query: 62 LPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
D V+ ALN + +F+RG +GR++ LR+ PEL+F +D S ++ L PK
Sbjct: 69 PLGGEHADEVVQALNRHARFLRGHLGRAI-ELRFTPELKFLHDESFNEAARMAKLFDDPK 127
Query: 122 IPVAL 126
+ L
Sbjct: 128 VRQDL 132
>gi|209551637|ref|YP_002283554.1| ribosome-binding factor A [Rhizobium leguminosarum bv. trifolii
WSM2304]
gi|226723606|sp|B5ZW28|RBFA_RHILW RecName: Full=Ribosome-binding factor A
gi|209537393|gb|ACI57328.1| ribosome-binding factor A [Rhizobium leguminosarum bv. trifolii
WSM2304]
Length = 134
Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats.
Identities = 54/126 (42%), Positives = 83/126 (65%)
Query: 2 KNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS 61
+ + S+R LRVGE+VR+A+ V+ E +D +I VISISEV MS DL++AT Y++
Sbjct: 3 RATSSAPSQRMLRVGEQVRAAITQVLQRGEVRDDVIEATVISISEVRMSPDLKIATAYVT 62
Query: 62 LPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
VI ALN + ++IRGR+G+ LR ++Y+PE+RFR DTS +Y K++ L+ P+
Sbjct: 63 PLGVSDHSVVIEALNRHARYIRGRLGQQLRQMKYMPEVRFRDDTSFDNYKKIDELLRSPE 122
Query: 122 IPVALE 127
+ L+
Sbjct: 123 VSRDLD 128
>gi|288959701|ref|YP_003450042.1| ribosome-binding factor A [Azospirillum sp. B510]
gi|288912009|dbj|BAI73498.1| ribosome-binding factor A [Azospirillum sp. B510]
Length = 190
Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats.
Identities = 38/122 (31%), Positives = 64/122 (52%), Gaps = 1/122 (0%)
Query: 5 NPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL 64
S+R LRVGEE+R AL + +F D ++ ++++EV +S DL ATV+ S
Sbjct: 12 GKPPSQRQLRVGEELRHALADLFRRGDFHDPELASLNVTVTEVRISPDLSNATVFYSTLG 71
Query: 65 DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPV 124
+ AL F+RG++ + NLR+ P L F DTS ++++++ P++
Sbjct: 72 GERMEEAQVALKRAAAFLRGQVA-RMVNLRHAPTLSFEGDTSFDYAHRIDSILHSPEVAR 130
Query: 125 AL 126
L
Sbjct: 131 DL 132
>gi|121601742|ref|YP_989504.1| ribosome-binding factor A [Bartonella bacilliformis KC583]
gi|120613919|gb|ABM44520.1| ribosome-binding factor A [Bartonella bacilliformis KC583]
Length = 148
Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats.
Identities = 53/128 (41%), Positives = 78/128 (60%), Gaps = 3/128 (2%)
Query: 4 KNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP 63
K+ S+R LRVGE+VR AL ++ D + V S+SEV MS DL++AT ++S
Sbjct: 16 KHADLSQRQLRVGEQVRHALAHMLQRGILLDDALKDVVFSVSEVRMSPDLKIATCFVSFL 75
Query: 64 L---DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
D+S +I LN + +FIRG I SLR ++Y+PELRFR D S ++ K++AL+ LP
Sbjct: 76 NTVDDISRATLIKVLNKHSRFIRGEISSSLRQMKYMPELRFRLDNSFDNFSKIDALLRLP 135
Query: 121 KIPVALEK 128
++ L
Sbjct: 136 EVARDLHH 143
>gi|171769483|sp|A1UU51|RBFA_BARBK RecName: Full=Ribosome-binding factor A
Length = 134
Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats.
Identities = 53/128 (41%), Positives = 78/128 (60%), Gaps = 3/128 (2%)
Query: 4 KNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP 63
K+ S+R LRVGE+VR AL ++ D + V S+SEV MS DL++AT ++S
Sbjct: 2 KHADLSQRQLRVGEQVRHALAHMLQRGILLDDALKDVVFSVSEVRMSPDLKIATCFVSFL 61
Query: 64 L---DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
D+S +I LN + +FIRG I SLR ++Y+PELRFR D S ++ K++AL+ LP
Sbjct: 62 NTVDDISRATLIKVLNKHSRFIRGEISSSLRQMKYMPELRFRLDNSFDNFSKIDALLRLP 121
Query: 121 KIPVALEK 128
++ L
Sbjct: 122 EVARDLHH 129
>gi|188582063|ref|YP_001925508.1| ribosome-binding factor A [Methylobacterium populi BJ001]
gi|259552026|sp|B1ZDQ7|RBFA_METPB RecName: Full=Ribosome-binding factor A
gi|179345561|gb|ACB80973.1| ribosome-binding factor A [Methylobacterium populi BJ001]
Length = 145
Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats.
Identities = 44/127 (34%), Positives = 67/127 (52%), Gaps = 1/127 (0%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
K S+R RV E VR AL V+ + QD ++ V+++ EV MS DL++AT Y+
Sbjct: 3 QKQTPSGPSQRQQRVAELVRHALAEVLQRGDIQDPVLGSHVVTVPEVRMSPDLKLATAYV 62
Query: 61 SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
VI+AL + K +R + R + NL+Y PELRFR D + +++ L+
Sbjct: 63 MPLGGQDEAPVIAALERHKKILRQEVARRV-NLKYAPELRFRRDETFDEAARIDQLLRSE 121
Query: 121 KIPVALE 127
K+ LE
Sbjct: 122 KVQRDLE 128
>gi|319405098|emb|CBI78702.1| Ribosome-binding factor A [Bartonella sp. AR 15-3]
Length = 138
Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats.
Identities = 53/126 (42%), Positives = 78/126 (61%), Gaps = 3/126 (2%)
Query: 4 KNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP 63
KN +S+R LRVGE+VR A+ ++ D VIS+SEV MS DL+VAT ++S
Sbjct: 3 KNISSSQRQLRVGEQVRHAIAHILQRGILLDDTFKNIVISVSEVRMSSDLKVATCFVSFL 62
Query: 64 LDVSP---DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
V D +++ALN N +FIRG I LR ++Y+P LRFR+D S ++ K++AL+ P
Sbjct: 63 NTVDKASHDTIVNALNKNSRFIRGAISHQLRQMKYMPTLRFRFDNSFDNFAKIDALLRSP 122
Query: 121 KIPVAL 126
++ L
Sbjct: 123 EVARDL 128
>gi|319898336|ref|YP_004158429.1| Ribosome-binding factor A [Bartonella clarridgeiae 73]
gi|319402300|emb|CBI75839.1| Ribosome-binding factor A [Bartonella clarridgeiae 73]
Length = 136
Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats.
Identities = 49/128 (38%), Positives = 79/128 (61%), Gaps = 3/128 (2%)
Query: 4 KNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP 63
KN S+R LR+GE+VR A+ ++ + D + +IS+SEV MS DL++AT ++S
Sbjct: 3 KNIGPSQRQLRIGEQVRHAVAHILQRDVLLDDALRNIIISVSEVRMSSDLKIATCFVSPL 62
Query: 64 LDVSP---DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
V + +ISALN + +FIRG + LR ++Y+P LRFR+D S ++ K++AL+ P
Sbjct: 63 NTVDKTSHNAIISALNKHSRFIRGAVSHQLRQMKYMPILRFRFDNSFDNFAKIDALLRSP 122
Query: 121 KIPVALEK 128
++ L
Sbjct: 123 EVARDLHH 130
>gi|304392770|ref|ZP_07374710.1| ribosome-binding factor A [Ahrensia sp. R2A130]
gi|303295400|gb|EFL89760.1| ribosome-binding factor A [Ahrensia sp. R2A130]
Length = 150
Score = 155 bits (394), Expect = 1e-36, Method: Composition-based stats.
Identities = 48/124 (38%), Positives = 73/124 (58%)
Query: 3 NKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL 62
KN S+R LRVGE VR ALM V+ + D +++ +I+ISEV M+ DL++A Y+SL
Sbjct: 2 KKNKGPSQRQLRVGELVRHALMDVLAREQLDDPVLASAMITISEVRMTADLKIANCYVSL 61
Query: 63 PLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
+ V+ AL F+RGR G L +R +P RFR DTS +++ +++AL+ +
Sbjct: 62 LGGGDMEAVLKALGRAEGFLRGRSGPHLSQMRSMPTFRFREDTSFENFARIDALLKSDAV 121
Query: 123 PVAL 126
L
Sbjct: 122 KRDL 125
>gi|306842725|ref|ZP_07475368.1| ribosome-binding factor A [Brucella sp. BO2]
gi|306287171|gb|EFM58673.1| ribosome-binding factor A [Brucella sp. BO2]
Length = 131
Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 52/114 (45%), Positives = 73/114 (64%)
Query: 15 VGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISA 74
+GE+VR AL V+ E +D LI R VIS+SEV MS DL++AT +I+ P VI A
Sbjct: 1 MGEQVRHALAQVLQRGEIRDDLIERTVISVSEVRMSPDLKIATCFITPLGSADPQAVIKA 60
Query: 75 LNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALEK 128
L + KFIRGR+ SL ++Y+PE RFR DTS ++ K++AL+ P++ L
Sbjct: 61 LASHAKFIRGRVAPSLAQMKYMPEFRFRPDTSFDNFSKIDALLRSPEVARDLSH 114
>gi|94497013|ref|ZP_01303587.1| ribosome-binding factor A [Sphingomonas sp. SKA58]
gi|94423689|gb|EAT08716.1| ribosome-binding factor A [Sphingomonas sp. SKA58]
Length = 133
Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 44/127 (34%), Positives = 69/127 (54%), Gaps = 1/127 (0%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
M N+ S R LRVGE+VR L ++ + D ++S V+S++EV MS DLR ATV+I
Sbjct: 1 MSNQPEGPSVRLLRVGEQVRHVLSEILQRGDVHDDVLSSHVVSVTEVRMSPDLRHATVFI 60
Query: 61 SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
L D V+ AL N +++ + +R L+Y +L+F D S ++ L+ P
Sbjct: 61 KSLLGQDEDAVLKALRTNTAYLQREVAHRIR-LKYAAKLKFLSDESFDEGSHIDKLLRDP 119
Query: 121 KIPVALE 127
K+ L+
Sbjct: 120 KVARDLD 126
>gi|209883659|ref|YP_002287516.1| ribosome-binding factor A [Oligotropha carboxidovorans OM5]
gi|226723605|sp|B6JCS1|RBFA_OLICO RecName: Full=Ribosome-binding factor A
gi|209871855|gb|ACI91651.1| ribosome-binding factor A [Oligotropha carboxidovorans OM5]
Length = 141
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 40/117 (34%), Positives = 65/117 (55%), Gaps = 1/117 (0%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPD 69
+R LRVGE +R A+ ++ D ++ +I++ EV MS DL++ATVY+ +
Sbjct: 18 QRQLRVGELIRHAMADILAQGGVHDDTLAGHIITVPEVRMSPDLKLATVYVMPLGGHDTE 77
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVAL 126
V++AL N KF+RG + + NL++ PELRFR D ++ L+ P + L
Sbjct: 78 AVLAALAHNKKFLRGEVAHRV-NLKFAPELRFRVDERFDEAERIEKLLRTPAVQRDL 133
>gi|209966180|ref|YP_002299095.1| ribosome-binding factor A [Rhodospirillum centenum SW]
gi|209959646|gb|ACJ00283.1| ribosome-binding factor A [Rhodospirillum centenum SW]
Length = 178
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 41/127 (32%), Positives = 72/127 (56%), Gaps = 2/127 (1%)
Query: 2 KNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS 61
K N S+R LRVGEE+R AL ++ +F+D + ++++EV +S DL+ AT ++
Sbjct: 9 KPGNTGPSQRQLRVGEEIRHALADILRRGDFRDPGLQDVNVTVTEVRVSPDLKNATAFV- 67
Query: 62 LPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+PL VI+ALN F R +I ++R L++ P + F+ DTS +++ L+ P
Sbjct: 68 MPLGGGHPEVIAALNHAAPFFRAQIAHAVR-LQHAPRIGFQEDTSFAYADRIDRLLHDPA 126
Query: 122 IPVALEK 128
+ + +
Sbjct: 127 VARDITR 133
>gi|218530873|ref|YP_002421689.1| ribosome-binding factor A [Methylobacterium chloromethanicum CM4]
gi|259552017|sp|B7KQJ7|RBFA_METC4 RecName: Full=Ribosome-binding factor A
gi|218523176|gb|ACK83761.1| ribosome-binding factor A [Methylobacterium chloromethanicum CM4]
Length = 145
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 40/127 (31%), Positives = 67/127 (52%), Gaps = 1/127 (0%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
K ++R RV E +R AL V+ + QD ++ V+++ EV MS DL++AT Y+
Sbjct: 3 QKQTPSGPTQRQQRVAELIRHALAEVLQRGDIQDPVLGSHVVTVPEVRMSPDLKLATAYV 62
Query: 61 SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
VI+AL + K +R + R + NL++ P+LRFR D + +++ L+
Sbjct: 63 MPLGGQDEAPVIAALERHKKILRQEVARRV-NLKFAPDLRFRRDETFDEAARIDQLLRSE 121
Query: 121 KIPVALE 127
K+ LE
Sbjct: 122 KVQRDLE 128
>gi|222084325|ref|YP_002542854.1| ribosome-binding factor A [Agrobacterium radiobacter K84]
gi|221721773|gb|ACM24929.1| ribosome-binding factor A [Agrobacterium radiobacter K84]
Length = 139
Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats.
Identities = 55/123 (44%), Positives = 82/123 (66%)
Query: 2 KNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS 61
+ S+R LRVGE+VR+A+ V+ E +D LI R VISISEV MS DL++AT +++
Sbjct: 4 RPTTSAPSQRMLRVGEQVRAAITQVLQRGEVRDDLIERTVISISEVRMSPDLKIATAFVT 63
Query: 62 LPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
D +I LN + K+IRGR+G+ LR ++Y+PE+RFR DTS +Y K++AL+ P+
Sbjct: 64 PLGVADHDLIIDTLNRHTKYIRGRLGQHLRQMKYMPEIRFRDDTSFDNYKKIDALLRSPE 123
Query: 122 IPV 124
+
Sbjct: 124 VQR 126
>gi|241207068|ref|YP_002978164.1| ribosome-binding factor A [Rhizobium leguminosarum bv. trifolii
WSM1325]
gi|240860958|gb|ACS58625.1| ribosome-binding factor A [Rhizobium leguminosarum bv. trifolii
WSM1325]
Length = 134
Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats.
Identities = 55/126 (43%), Positives = 82/126 (65%)
Query: 2 KNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS 61
+ + S+R LR+GE+VR+AL V+ E +D +I VISISEV MS DL++AT Y++
Sbjct: 3 RPTSSAPSQRMLRIGEQVRAALTQVLQRGEVRDEIIEATVISISEVRMSTDLKIATAYVT 62
Query: 62 LPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
VI ALN + +FIRGR+G LR ++Y+PE+RFR DTS +Y K++ L+ P+
Sbjct: 63 PLGVSDHSIVIKALNRHARFIRGRLGPQLRQMKYMPEVRFRDDTSFDNYKKIDELLRSPE 122
Query: 122 IPVALE 127
+ L+
Sbjct: 123 VSRDLD 128
>gi|163852115|ref|YP_001640158.1| ribosome-binding factor A [Methylobacterium extorquens PA1]
gi|240139444|ref|YP_002963919.1| ribosome-binding factor A [Methylobacterium extorquens AM1]
gi|254561859|ref|YP_003068954.1| ribosome-binding factor A [Methylobacterium extorquens DM4]
gi|259552020|sp|A9W681|RBFA_METEP RecName: Full=Ribosome-binding factor A
gi|163663720|gb|ABY31087.1| ribosome-binding factor A [Methylobacterium extorquens PA1]
gi|240009416|gb|ACS40642.1| ribosome-binding factor A [Methylobacterium extorquens AM1]
gi|254269137|emb|CAX25101.1| ribosome-binding factor A [Methylobacterium extorquens DM4]
Length = 145
Score = 155 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 40/127 (31%), Positives = 67/127 (52%), Gaps = 1/127 (0%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
K ++R RV E +R AL V+ + QD ++ V+++ EV MS DL++AT Y+
Sbjct: 3 QKQTPSGPTQRQQRVAELIRHALAEVLQRGDIQDPVLGSHVVTVPEVRMSPDLKLATAYV 62
Query: 61 SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
VI+AL + K +R + R + NL++ P+LRFR D + +++ L+
Sbjct: 63 MPLGGQDEAPVIAALERHKKILRQEVARRV-NLKFAPDLRFRRDETFDEAARIDQLLRSE 121
Query: 121 KIPVALE 127
K+ LE
Sbjct: 122 KVQRDLE 128
>gi|294011607|ref|YP_003545067.1| ribosome-binding factor A [Sphingobium japonicum UT26S]
gi|292674937|dbj|BAI96455.1| ribosome-binding factor A [Sphingobium japonicum UT26S]
Length = 133
Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats.
Identities = 44/128 (34%), Positives = 68/128 (53%), Gaps = 1/128 (0%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
M N S R LRVGE+VR L ++ + D +++ V+S++EV MS DLR ATV+I
Sbjct: 1 MPAPNEGPSVRLLRVGEQVRHVLSDILQRGDVHDDVLASHVVSVTEVRMSPDLRHATVFI 60
Query: 61 SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
L V+ AL N F++ + +R L+Y +L+F D S ++ L+ P
Sbjct: 61 KSLLGQDEAAVLKALRTNTAFLQREVATRIR-LKYAAKLKFLADESFDEGSHIDKLLRDP 119
Query: 121 KIPVALEK 128
K+ LE+
Sbjct: 120 KVARDLEQ 127
>gi|144899453|emb|CAM76317.1| Ribosome-binding factor A [Magnetospirillum gryphiswaldense MSR-1]
Length = 144
Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats.
Identities = 39/126 (30%), Positives = 66/126 (52%), Gaps = 1/126 (0%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
M ++R LRVGEE+R + +I E +D ++ I+++EV +S DL+ ATV++
Sbjct: 1 MPRGQKPPTQRQLRVGEELRHIIANIIERGEIRDPDLAGRAITVTEVRISPDLKNATVFV 60
Query: 61 SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
+ V+ L FIR + R + +LR P+L F+ DTS ++AL+ P
Sbjct: 61 VPLGGGEVETVVKGLKRARSFIRHEVARQV-DLRIAPDLFFQADTSFDEASHIDALLRSP 119
Query: 121 KIPVAL 126
++ L
Sbjct: 120 QVRRDL 125
>gi|217978440|ref|YP_002362587.1| ribosome-binding factor A [Methylocella silvestris BL2]
gi|254789756|sp|B8EIA6|RBFA_METSB RecName: Full=Ribosome-binding factor A
gi|217503816|gb|ACK51225.1| ribosome-binding factor A [Methylocella silvestris BL2]
Length = 155
Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats.
Identities = 42/125 (33%), Positives = 74/125 (59%), Gaps = 1/125 (0%)
Query: 3 NKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL 62
+ + S+R LRV E VR A+ ++ ++ D + VI++ +V MS DL++ATVY+
Sbjct: 7 QQGGQPSQRMLRVAELVRHAMSELLTRSDINDPALEGKVITVPDVRMSPDLKLATVYVMP 66
Query: 63 PLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
+ V++AL+ + K +RG I R + +LR+ P++RF+ D + K++AL+ PK+
Sbjct: 67 LGGENVTEVLAALDRHKKLLRGEIARRV-SLRFAPDVRFKADPGFEYSGKIDALLSSPKV 125
Query: 123 PVALE 127
LE
Sbjct: 126 KQDLE 130
>gi|332188278|ref|ZP_08390005.1| ribosome-binding factor A [Sphingomonas sp. S17]
gi|332011674|gb|EGI53752.1| ribosome-binding factor A [Sphingomonas sp. S17]
Length = 135
Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats.
Identities = 38/128 (29%), Positives = 69/128 (53%), Gaps = 1/128 (0%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
+ S R LRVGE+VR L ++ + D +++ ++S++EV MS DLR ATV++
Sbjct: 3 QAKNPAEPSVRLLRVGEQVRHILSEILARGDVHDETLAKHMVSVTEVRMSPDLRHATVFV 62
Query: 61 SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
L + VI AL N +++ + ++ ++Y +L+F D S +++L+ P
Sbjct: 63 KPLLGKDEEVVIKALRTNTAYLQREVAHRVK-MKYAAKLKFLADESFDEGSHIDSLLRSP 121
Query: 121 KIPVALEK 128
K+ LE+
Sbjct: 122 KVSQDLEE 129
>gi|172046706|sp|Q3SWP8|RBFA_NITWN RecName: Full=Ribosome-binding factor A
Length = 137
Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats.
Identities = 42/126 (33%), Positives = 68/126 (53%), Gaps = 1/126 (0%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
K+P S R LRV E VR A+ ++ + D ++ ++++ EV MS DL++AT+Y+
Sbjct: 6 QPEKHPGGSHRQLRVAETVRHAIADILAQGQVHDPVLEGHLVTVPEVRMSADLKLATIYV 65
Query: 61 SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
VI AL+ N KF+RG I R + NL++ P++RFR D ++ L+ P
Sbjct: 66 MPLGGRDTADVIDALDRNRKFLRGEIARRV-NLKFAPDIRFRVDERFDEAERIEKLLRTP 124
Query: 121 KIPVAL 126
+ L
Sbjct: 125 AVQRDL 130
>gi|118590501|ref|ZP_01547903.1| ribosome-binding factor A [Stappia aggregata IAM 12614]
gi|118436964|gb|EAV43603.1| ribosome-binding factor A [Stappia aggregata IAM 12614]
Length = 170
Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats.
Identities = 41/122 (33%), Positives = 69/122 (56%), Gaps = 1/122 (0%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
S+R LRVGE VR L ++ F D + +++I EV M+ DLR+AT + V
Sbjct: 40 GPSQRQLRVGETVRKELSDILTRGRFSDPDLDGVIVTIPEVRMTPDLRLATCLVMPLGGV 99
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVAL 126
+ + V ALN + K++RG++ R L ++Y+P+LRF DT ++ L+ P++ L
Sbjct: 100 NAENVEKALNRSAKYLRGQVSRRL-TMKYMPDLRFVLDTRFDDDDRIGTLLHSPEVSRDL 158
Query: 127 EK 128
++
Sbjct: 159 DE 160
>gi|75674224|ref|YP_316645.1| ribosome-binding factor A [Nitrobacter winogradskyi Nb-255]
gi|74419094|gb|ABA03293.1| ribosome-binding factor A [Nitrobacter winogradskyi Nb-255]
Length = 146
Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats.
Identities = 42/126 (33%), Positives = 68/126 (53%), Gaps = 1/126 (0%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
K+P S R LRV E VR A+ ++ + D ++ ++++ EV MS DL++AT+Y+
Sbjct: 15 QPEKHPGGSHRQLRVAETVRHAIADILAQGQVHDPVLEGHLVTVPEVRMSADLKLATIYV 74
Query: 61 SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
VI AL+ N KF+RG I R + NL++ P++RFR D ++ L+ P
Sbjct: 75 MPLGGRDTADVIDALDRNRKFLRGEIARRV-NLKFAPDIRFRVDERFDEAERIEKLLRTP 133
Query: 121 KIPVAL 126
+ L
Sbjct: 134 AVQRDL 139
>gi|83313169|ref|YP_423433.1| ribosome-binding factor A [Magnetospirillum magneticum AMB-1]
gi|123540595|sp|Q2VZV1|RBFA_MAGMM RecName: Full=Ribosome-binding factor A
gi|82948010|dbj|BAE52874.1| Ribosome-binding factor A [Magnetospirillum magneticum AMB-1]
Length = 142
Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats.
Identities = 39/128 (30%), Positives = 69/128 (53%), Gaps = 1/128 (0%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
M S+R LRVGEE+R A+ VI EF+D + I+++EV +S DLR ATV++
Sbjct: 1 MSRGAKPPSQRQLRVGEELRHAIAMVIERGEFRDPDLLGRAITVTEVRVSPDLRNATVFV 60
Query: 61 SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
+++ L F+R I + LR VP+L F+ DT+ + ++++++ P
Sbjct: 61 VPLGGGDVAPILAGLKRAKAFLRHEIS-RMVELRAVPDLWFQEDTTFDTASRIDSILNSP 119
Query: 121 KIPVALEK 128
++ ++
Sbjct: 120 EVRRDIDH 127
>gi|103486106|ref|YP_615667.1| ribosome-binding factor A [Sphingopyxis alaskensis RB2256]
gi|123078561|sp|Q1GVI8|RBFA_SPHAL RecName: Full=Ribosome-binding factor A
gi|98976183|gb|ABF52334.1| ribosome-binding factor A [Sphingopyxis alaskensis RB2256]
Length = 136
Score = 153 bits (389), Expect = 5e-36, Method: Composition-based stats.
Identities = 38/126 (30%), Positives = 68/126 (53%), Gaps = 1/126 (0%)
Query: 2 KNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS 61
K ++ S R LRVGE+VR L ++ + D +++ +S++EV MS DLR ATV++
Sbjct: 4 KEQSEGPSVRVLRVGEQVRHVLSEILARGDVHDDVLATHPVSVTEVRMSPDLRHATVFVK 63
Query: 62 LPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
L + V+ A+ N +++ + +R ++Y +L+F D S ++ L+ PK
Sbjct: 64 PLLGKDEEAVLKAMRTNTAYLQREVAHRIR-MKYAAKLKFLADDSFDEASHIDRLLRDPK 122
Query: 122 IPVALE 127
+ LE
Sbjct: 123 VARDLE 128
>gi|91974712|ref|YP_567371.1| ribosome-binding factor A [Rhodopseudomonas palustris BisB5]
gi|123061509|sp|Q13EL9|RBFA_RHOPS RecName: Full=Ribosome-binding factor A
gi|91681168|gb|ABE37470.1| ribosome-binding factor A [Rhodopseudomonas palustris BisB5]
Length = 136
Score = 153 bits (389), Expect = 5e-36, Method: Composition-based stats.
Identities = 44/127 (34%), Positives = 67/127 (52%), Gaps = 1/127 (0%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
K S R LRVGE VR A+ ++ D ++ +I++ EV MS DL++ATVY+
Sbjct: 5 QKPTGQSESPRKLRVGELVRHAVAEILAQGGVHDPVLETHLITVPEVRMSPDLKLATVYV 64
Query: 61 SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
VI+AL + +F+RG + R + NL+Y PE+RFR D ++ L+ P
Sbjct: 65 MPLGGRDEKLVIAALEQHKRFLRGEVARRV-NLKYAPEIRFRIDERFAEAERIEKLLRTP 123
Query: 121 KIPVALE 127
+ LE
Sbjct: 124 AVQKDLE 130
>gi|86355775|ref|YP_467667.1| ribosome-binding factor A [Rhizobium etli CFN 42]
gi|123513437|sp|Q2KDZ6|RBFA_RHIEC RecName: Full=Ribosome-binding factor A
gi|86279877|gb|ABC88940.1| ribosome binding factor A, rRNA processing protein [Rhizobium etli
CFN 42]
Length = 136
Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats.
Identities = 55/121 (45%), Positives = 80/121 (66%)
Query: 2 KNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS 61
+ + S+R LRVGE+VR+A+ V+ E +D +I VISISEV MS DL++AT Y++
Sbjct: 3 RPTSSAPSQRMLRVGEQVRAAITQVLQRGEVRDDIIEATVISISEVRMSPDLKIATAYVT 62
Query: 62 LPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
VI ALN + KFIRGR+G LR ++Y+PE+RFR DTS +Y K++ L+ P+
Sbjct: 63 PLGVSDHSIVIEALNRHAKFIRGRLGPQLRQMKYMPEVRFRDDTSFDNYKKIDELLRSPE 122
Query: 122 I 122
+
Sbjct: 123 V 123
>gi|23016106|ref|ZP_00055866.1| COG0858: Ribosome-binding factor A [Magnetospirillum
magnetotacticum MS-1]
Length = 142
Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats.
Identities = 39/128 (30%), Positives = 69/128 (53%), Gaps = 1/128 (0%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
M S+R LRVGEE+R A+ VI EF+D + I+++EV +S DLR ATV++
Sbjct: 1 MSRGAKPPSQRQLRVGEELRHAIAMVIERGEFRDPDLLGRAITVTEVRVSPDLRNATVFV 60
Query: 61 SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
+++ L F+R I + LR VP+L F+ DT+ + ++++++ P
Sbjct: 61 VPLGGGDVAPILAGLKRAKAFLRHEIS-RMVELRAVPDLWFQEDTTFDTASRIDSILNSP 119
Query: 121 KIPVALEK 128
++ ++
Sbjct: 120 EVRRDIDH 127
>gi|27375893|ref|NP_767422.1| ribosome-binding factor A [Bradyrhizobium japonicum USDA 110]
gi|32171617|sp|Q89WB0|RBFA_BRAJA RecName: Full=Ribosome-binding factor A
gi|27349031|dbj|BAC46047.1| ribosome-binding factor A [Bradyrhizobium japonicum USDA 110]
Length = 144
Score = 153 bits (388), Expect = 6e-36, Method: Composition-based stats.
Identities = 41/122 (33%), Positives = 69/122 (56%), Gaps = 1/122 (0%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
S+R LRVGE+VR A+ ++ D + ++++ EV MS DL++AT+Y+
Sbjct: 14 GGSQRQLRVGEQVRHAMAEILAQGNVHDADLEGHIVTVPEVRMSPDLKLATIYVMPLGGR 73
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVAL 126
+ VI+AL N KF+RG + R + NL++ P++RFR D ++ L+ P + L
Sbjct: 74 DTEIVIAALERNKKFLRGEVARRV-NLKFAPDVRFRVDERFDEAERIEKLLRTPAVQKDL 132
Query: 127 EK 128
E+
Sbjct: 133 EQ 134
>gi|154244249|ref|YP_001415207.1| ribosome-binding factor A [Xanthobacter autotrophicus Py2]
gi|238686704|sp|A7IC07|RBFA_XANP2 RecName: Full=Ribosome-binding factor A
gi|154158334|gb|ABS65550.1| ribosome-binding factor A [Xanthobacter autotrophicus Py2]
Length = 151
Score = 153 bits (388), Expect = 7e-36, Method: Composition-based stats.
Identities = 46/122 (37%), Positives = 68/122 (55%), Gaps = 1/122 (0%)
Query: 3 NKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL 62
S+R LRVGE VR AL V+ D +++ +I++ EV MS DL++AT Y+
Sbjct: 6 RTGGGPSQRMLRVGELVRHALADVLQRGSVTDPVLAAHIITVPEVRMSPDLKIATCYVMP 65
Query: 63 PLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
VI AL N +++R +GR + L+ VPELRFR DTS +++AL+ PK+
Sbjct: 66 LGGKDITPVIKALAANARYLRLEVGRRM-ELKSVPELRFREDTSFDEGARMDALLRSPKV 124
Query: 123 PV 124
Sbjct: 125 VR 126
>gi|170750124|ref|YP_001756384.1| ribosome-binding factor A [Methylobacterium radiotolerans JCM 2831]
gi|259552029|sp|B1LWZ6|RBFA_METRJ RecName: Full=Ribosome-binding factor A
gi|170656646|gb|ACB25701.1| ribosome-binding factor A [Methylobacterium radiotolerans JCM 2831]
Length = 142
Score = 153 bits (387), Expect = 8e-36, Method: Composition-based stats.
Identities = 41/127 (32%), Positives = 69/127 (54%), Gaps = 1/127 (0%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
K + S+R RV E VR AL V+ + QD ++ V+++ EV MS DL++AT Y+
Sbjct: 3 QKPTSTGPSQRQQRVAELVRHALAEVLQRGDIQDPVLGTHVVTVPEVRMSPDLKLATAYV 62
Query: 61 SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
+ VI+AL + K +R + R + NL++ PELRFR D + +++ L+
Sbjct: 63 MPLGGLDEAPVIAALERHRKVLRQAVARRV-NLKFAPELRFRRDETFDEAARIDRLLRDE 121
Query: 121 KIPVALE 127
++ L+
Sbjct: 122 RVQRDLD 128
>gi|90420530|ref|ZP_01228437.1| ribosome-binding factor A [Aurantimonas manganoxydans SI85-9A1]
gi|90335258|gb|EAS49011.1| ribosome-binding factor A [Aurantimonas manganoxydans SI85-9A1]
Length = 137
Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 45/123 (36%), Positives = 78/123 (63%)
Query: 2 KNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS 61
+ + S+R L VGE+VR AL V+ E D ++ + ++ ++EV MS DL++AT Y++
Sbjct: 3 RTSSSGPSQRQLSVGEKVRHALTEVMQRGEINDPMLEKALVLVTEVRMSSDLKLATAYVT 62
Query: 62 LPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+ + ALN N +FIRGR+ +LR ++Y+PE+RFR DTS ++ +++AL+ P+
Sbjct: 63 ILGQTETKPFVDALNRNARFIRGRLTPALRQMKYMPEVRFRTDTSFDNFARIDALLKSPE 122
Query: 122 IPV 124
+
Sbjct: 123 VAR 125
>gi|85714174|ref|ZP_01045163.1| ribosome-binding factor A [Nitrobacter sp. Nb-311A]
gi|85699300|gb|EAQ37168.1| ribosome-binding factor A [Nitrobacter sp. Nb-311A]
Length = 137
Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 42/123 (34%), Positives = 68/123 (55%), Gaps = 1/123 (0%)
Query: 4 KNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP 63
K+P S R LRV E VR A+ ++ + D ++ ++++ EV MS DL++AT+Y+
Sbjct: 9 KHPGGSHRQLRVAESVRHAIADILAQGQVHDPVLEGRLVTVPEVRMSADLKLATIYVMPL 68
Query: 64 LDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIP 123
VI AL+ N KF+RG I R + NL++ P++RFR D ++ L+ P +
Sbjct: 69 GGRDTAEVIDALDHNRKFLRGEIARRV-NLKFAPDIRFRVDERFDEAERIEKLLRTPAVQ 127
Query: 124 VAL 126
L
Sbjct: 128 RDL 130
>gi|316931580|ref|YP_004106562.1| ribosome-binding factor A [Rhodopseudomonas palustris DX-1]
gi|315599294|gb|ADU41829.1| ribosome-binding factor A [Rhodopseudomonas palustris DX-1]
Length = 137
Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 38/127 (29%), Positives = 67/127 (52%), Gaps = 1/127 (0%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
K+ S R+LRVGE VR A+ ++ D ++ ++++ EV MS DL++AT+Y+
Sbjct: 6 QKSSPSGGSTRSLRVGELVRHAVAEILSQGGVHDPVLESHLVTVPEVRMSPDLKLATIYV 65
Query: 61 SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
V+ AL + +F+RG I + L++ P++RFR D +++ L+ P
Sbjct: 66 MPLGGRDEKLVLDALEHHKRFLRGEIAHRV-ALKFAPDIRFRIDERFAEAERIDRLLRSP 124
Query: 121 KIPVALE 127
+ LE
Sbjct: 125 AVQKDLE 131
>gi|148251682|ref|YP_001236267.1| ribosome-binding factor A [Bradyrhizobium sp. BTAi1]
gi|166218423|sp|A5E867|RBFA_BRASB RecName: Full=Ribosome-binding factor A
gi|146403855|gb|ABQ32361.1| ribosome-binding factor A [Bradyrhizobium sp. BTAi1]
Length = 138
Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 40/124 (32%), Positives = 65/124 (52%), Gaps = 1/124 (0%)
Query: 3 NKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL 62
+ S+R LRV E VR A+ ++ D + +I++ EV MS DL++AT+YI
Sbjct: 9 STASGGSQRQLRVAETVRHAVADILSQGSAHDPDLEGHIITVPEVRMSPDLKLATIYIMP 68
Query: 63 PLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
+ V++AL N KF+RG I + NL++ P++RFR D ++ L+ P +
Sbjct: 69 LGGRDTEIVLAALERNKKFLRGEIAHRV-NLKFAPDIRFRADERFDEAERIEKLLRTPAV 127
Query: 123 PVAL 126
L
Sbjct: 128 QRDL 131
>gi|254295407|ref|YP_003061430.1| ribosome-binding factor A [Hirschia baltica ATCC 49814]
gi|254043938|gb|ACT60733.1| ribosome-binding factor A [Hirschia baltica ATCC 49814]
Length = 143
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 44/126 (34%), Positives = 70/126 (55%), Gaps = 3/126 (2%)
Query: 3 NKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL 62
+ S+R LR GE VR AL+ ++L +F D ++ I++SEV MS DL+ AT Y++
Sbjct: 7 SSAKGPSQRQLRAGELVRHALVDILLREQFNDPALADVSITVSEVRMSPDLQHATCYVAP 66
Query: 63 PLDVS--PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
+ ++ LN F+RGR+GR + ++RY P+LRF D S K+ L+ P
Sbjct: 67 LGGDESAQESIVHGLNRAKGFLRGRLGREI-DMRYTPQLRFLSDDSYTEAGKIGDLLASP 125
Query: 121 KIPVAL 126
++ L
Sbjct: 126 EVARDL 131
>gi|307293336|ref|ZP_07573182.1| ribosome-binding factor A [Sphingobium chlorophenolicum L-1]
gi|306881402|gb|EFN12618.1| ribosome-binding factor A [Sphingobium chlorophenolicum L-1]
Length = 133
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 42/128 (32%), Positives = 68/128 (53%), Gaps = 1/128 (0%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
M N S R LRVGE+VR L ++ + D ++ V+S++EV MS DLR ATV+I
Sbjct: 1 MPAPNEGPSVRLLRVGEQVRHILSDILQRGDVHDDVLVSHVVSVTEVRMSPDLRHATVFI 60
Query: 61 SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
L + V+ AL N +++ + +R L+Y +L+F D S ++ L+ P
Sbjct: 61 KSLLGQDEEAVLKALRTNTAYLQREVATRIR-LKYAAKLKFLADESFDEGTHIDKLLRDP 119
Query: 121 KIPVALEK 128
K+ L++
Sbjct: 120 KVARDLDQ 127
>gi|92115665|ref|YP_575394.1| ribosome-binding factor A [Nitrobacter hamburgensis X14]
gi|122418983|sp|Q1QS63|RBFA_NITHX RecName: Full=Ribosome-binding factor A
gi|91798559|gb|ABE60934.1| ribosome-binding factor A [Nitrobacter hamburgensis X14]
Length = 137
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 42/125 (33%), Positives = 67/125 (53%), Gaps = 1/125 (0%)
Query: 2 KNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS 61
K+ S+R LRV E VR A+ ++ D ++ +I++ EV MS DL++AT+Y+
Sbjct: 7 KDSTSGASQRQLRVAETVRHAIADILAQGHVHDPVLEGHLITVPEVRMSADLKLATIYVM 66
Query: 62 LPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
VI AL+ N KF+RG I R + NL++ P++RFR D ++ L+ P
Sbjct: 67 PLGGRDTTDVIDALDHNRKFLRGEIARRV-NLKFAPDIRFRADERFDEAERIEKLLRTPA 125
Query: 122 IPVAL 126
+ L
Sbjct: 126 VQRDL 130
>gi|86747727|ref|YP_484223.1| ribosome-binding factor A [Rhodopseudomonas palustris HaA2]
gi|123004688|sp|Q2J2J8|RBFA_RHOP2 RecName: Full=Ribosome-binding factor A
gi|86570755|gb|ABD05312.1| ribosome-binding factor A [Rhodopseudomonas palustris HaA2]
Length = 135
Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 42/125 (33%), Positives = 66/125 (52%), Gaps = 1/125 (0%)
Query: 2 KNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS 61
K S R LRVGE VR A+ ++ D ++ +I++ EV MS DL++ATVY+
Sbjct: 6 KKTGQSASPRKLRVGELVRHAVAEILSQGGVHDPVLETHLITVPEVRMSPDLKLATVYVM 65
Query: 62 LPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
V++AL + +F+RG + R + NL+Y P+LRFR D ++ L+ P
Sbjct: 66 PLGGKDEKPVLAALEQHKRFLRGEVARRV-NLKYAPDLRFRIDERFAEAERIEKLLRTPA 124
Query: 122 IPVAL 126
+ L
Sbjct: 125 VQKDL 129
>gi|148556716|ref|YP_001264298.1| ribosome-binding factor A [Sphingomonas wittichii RW1]
gi|166219409|sp|A5VCZ4|RBFA_SPHWW RecName: Full=Ribosome-binding factor A
gi|148501906|gb|ABQ70160.1| ribosome-binding factor A [Sphingomonas wittichii RW1]
Length = 132
Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats.
Identities = 45/128 (35%), Positives = 73/128 (57%), Gaps = 2/128 (1%)
Query: 2 KNKNPKN-SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
+N+ P+ S R LRVGE+VR AL +++ E D +++ ++S++EV MS DLR ATV++
Sbjct: 3 RNETPEGRSVRLLRVGEQVRHALSDILMRGEVHDDVLASHMVSVTEVRMSPDLRHATVFV 62
Query: 61 SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
L D VI AL N F++ + R + N +Y +L+F D S ++ L+ P
Sbjct: 63 KPLLGGDEDIVIKALRTNTAFLQSEVARRV-NTKYAAKLKFLADESFDEGSHIDRLLRDP 121
Query: 121 KIPVALEK 128
I L++
Sbjct: 122 SIARDLDQ 129
>gi|307942747|ref|ZP_07658092.1| ribosome-binding factor A [Roseibium sp. TrichSKD4]
gi|307773543|gb|EFO32759.1| ribosome-binding factor A [Roseibium sp. TrichSKD4]
Length = 136
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 41/121 (33%), Positives = 69/121 (57%), Gaps = 1/121 (0%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
S+R LRVGE VR L ++ EFQD + +I++ EV M+ DLR+AT +
Sbjct: 11 GPSQRQLRVGETVRKELSDILTRGEFQDPALEGAIITVPEVRMTPDLRLATCLVMPLGGG 70
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVAL 126
++V +ALN + K++RG++ R L ++Y+P+LRF DT ++ +L+ + L
Sbjct: 71 DGEKVAAALNKSAKYLRGQVSRRL-TMKYMPDLRFVLDTRFDDDDRIGSLLQSGTVARDL 129
Query: 127 E 127
+
Sbjct: 130 D 130
>gi|241761096|ref|ZP_04759185.1| ribosome-binding factor A [Zymomonas mobilis subsp. mobilis ATCC
10988]
gi|260752938|ref|YP_003225831.1| ribosome-binding factor A [Zymomonas mobilis subsp. mobilis NCIMB
11163]
gi|241374715|gb|EER64176.1| ribosome-binding factor A [Zymomonas mobilis subsp. mobilis ATCC
10988]
gi|258552301|gb|ACV75247.1| ribosome-binding factor A [Zymomonas mobilis subsp. mobilis NCIMB
11163]
Length = 141
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 45/128 (35%), Positives = 75/128 (58%), Gaps = 2/128 (1%)
Query: 2 KNKNPKN-SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
+N+ P+ S R LRVGE++R L +++ E + +SISEV M+ DLR+ATV++
Sbjct: 3 RNQTPEGHSIRPLRVGEQIRHVLAEMLMRGEIHGDTLDNLFVSISEVRMTPDLRIATVFV 62
Query: 61 SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
S D VI L+ N F++ I + +R L+YVP+LRF D S + ++++L+ P
Sbjct: 63 KSLGGASDDTVIGVLSKNASFLQAAIAKKIR-LKYVPKLRFLADESFEQGSRIDSLLRSP 121
Query: 121 KIPVALEK 128
+ L++
Sbjct: 122 HVQRDLQE 129
>gi|146337228|ref|YP_001202276.1| ribosome-binding factor A [Bradyrhizobium sp. ORS278]
gi|166218424|sp|A4YJF0|RBFA_BRASO RecName: Full=Ribosome-binding factor A
gi|146190034|emb|CAL74026.1| Ribosome-binding factor A [Bradyrhizobium sp. ORS278]
Length = 138
Score = 150 bits (381), Expect = 4e-35, Method: Composition-based stats.
Identities = 41/121 (33%), Positives = 65/121 (53%), Gaps = 1/121 (0%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
S+R LRV E VR A+ ++ D + +I++ EV MS DL++AT+YI
Sbjct: 12 SGGSQRQLRVAETVRHAVADILSQGSAHDPDLEGHIITVPEVRMSPDLKLATIYIMPLGG 71
Query: 66 VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
D V++AL N KF+RG + R + NL++ P++RFR D ++ L+ P +
Sbjct: 72 RDTDVVLAALERNKKFLRGEVARRV-NLKFAPDIRFRVDERFDEAERIEKLLRTPAVQRD 130
Query: 126 L 126
L
Sbjct: 131 L 131
>gi|56551449|ref|YP_162288.1| ribosome-binding factor A [Zymomonas mobilis subsp. mobilis ZM4]
gi|61214722|sp|Q5NQ28|RBFA_ZYMMO RecName: Full=Ribosome-binding factor A
gi|56543023|gb|AAV89177.1| ribosome-binding factor A [Zymomonas mobilis subsp. mobilis ZM4]
Length = 141
Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats.
Identities = 45/128 (35%), Positives = 75/128 (58%), Gaps = 2/128 (1%)
Query: 2 KNKNPKN-SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
+N+ P+ S R LRVGE++R L +++ E + +SISEV M+ DLR+ATV++
Sbjct: 3 RNQTPEGHSIRPLRVGEQIRHVLAEMLMRGEIHGDTLDNLFVSISEVRMTPDLRIATVFV 62
Query: 61 SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
S D VI L+ N F++ I + +R L+YVP+LRF D S + ++++L+ P
Sbjct: 63 KSLGGASDDTVIGILSKNASFLQAAIAKKIR-LKYVPKLRFLADESFEQGSRIDSLLRSP 121
Query: 121 KIPVALEK 128
+ L++
Sbjct: 122 HVQRDLQE 129
>gi|114329055|ref|YP_746212.1| ribosome-binding factor A [Granulibacter bethesdensis CGDNIH1]
gi|122325999|sp|Q0BPG3|RBFA_GRABC RecName: Full=Ribosome-binding factor A
gi|114317229|gb|ABI63289.1| ribosome-binding factor A [Granulibacter bethesdensis CGDNIH1]
Length = 138
Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats.
Identities = 40/121 (33%), Positives = 70/121 (57%), Gaps = 1/121 (0%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS 67
S+R LRV EE+R L V EF+D ++ +I+EV +S DL+ ATV+IS
Sbjct: 19 PSQRQLRVAEEIRHVLAGVFARQEFRDPELATTTFTINEVRISPDLKHATVFISRLGSSE 78
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALE 127
+ ++ L ++RG + + +R LRY PEL F+ D++L+ +++L+ P++ L+
Sbjct: 79 IEPLLPNLKRVATYLRGEVAKVMR-LRYAPELHFQPDSALEYAMHVDSLLRRPEVKRDLD 137
Query: 128 K 128
+
Sbjct: 138 E 138
>gi|170740828|ref|YP_001769483.1| ribosome-binding factor A [Methylobacterium sp. 4-46]
gi|259552032|sp|B0UL49|RBFA_METS4 RecName: Full=Ribosome-binding factor A
gi|168195102|gb|ACA17049.1| ribosome-binding factor A [Methylobacterium sp. 4-46]
Length = 139
Score = 150 bits (379), Expect = 8e-35, Method: Composition-based stats.
Identities = 43/123 (34%), Positives = 67/123 (54%), Gaps = 1/123 (0%)
Query: 4 KNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP 63
+ S+R RV E VR A+ V+ + QD ++SR VI++ EV MS DL++AT Y+
Sbjct: 6 ETAGPSQRQQRVAELVRHAIAEVLSRGDLQDPVLSRHVITVPEVRMSPDLKLATAYVMPL 65
Query: 64 LDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIP 123
V+ AL N K +R + R + NL++ PELRFR D + +++ L+ K+
Sbjct: 66 GGQDEAPVLEALERNRKALRQEVARRV-NLKFAPELRFRRDETFDEAARIDRLLRSEKVQ 124
Query: 124 VAL 126
L
Sbjct: 125 RDL 127
>gi|114571585|ref|YP_758265.1| ribosome-binding factor A [Maricaulis maris MCS10]
gi|122314885|sp|Q0AK66|RBFA_MARMM RecName: Full=Ribosome-binding factor A
gi|114342047|gb|ABI67327.1| ribosome-binding factor A [Maricaulis maris MCS10]
Length = 141
Score = 149 bits (378), Expect = 9e-35, Method: Composition-based stats.
Identities = 43/124 (34%), Positives = 69/124 (55%), Gaps = 1/124 (0%)
Query: 4 KNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP 63
+ S+R LR GE VR AL+ +I EF+D + +IS++EV S DLRVA VY++
Sbjct: 8 TSKGPSQRQLRAGELVRHALVGIIAREEFRDPDLEGQMISVTEVRPSPDLRVAKVYVAPL 67
Query: 64 LDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIP 123
++ + LN F+RGR+GR + +++ PEL F D S + ++ L+ P +
Sbjct: 68 GRGDSAKLAAGLNRCAAFLRGRLGREI-EMKFTPELHFHADNSFDTASHVDDLLNRPTVR 126
Query: 124 VALE 127
L+
Sbjct: 127 KDLD 130
>gi|296534730|ref|ZP_06897109.1| ribosome-binding factor A [Roseomonas cervicalis ATCC 49957]
gi|296264943|gb|EFH11189.1| ribosome-binding factor A [Roseomonas cervicalis ATCC 49957]
Length = 144
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 43/129 (33%), Positives = 68/129 (52%), Gaps = 4/129 (3%)
Query: 1 MKNKNPK---NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVAT 57
M K S+R LRV EEVR AL V + EF D +S I+++EV S DL+ T
Sbjct: 1 MAKKTAAAGAPSQRMLRVAEEVRHALSAVFMRGEFHDPDLSGRHITVTEVRASPDLKHMT 60
Query: 58 VYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
++S + L F+R ++ R++R L++ PE+ F+ DT+L K++A+M
Sbjct: 61 CFVSALGRPVTKEELQGLRRVQPFLRTQVARAVR-LKFAPEMHFQPDTALDYAMKIDAVM 119
Query: 118 CLPKIPVAL 126
P++ L
Sbjct: 120 RRPEVQQDL 128
>gi|330991193|ref|ZP_08315146.1| Ribosome-binding factor A [Gluconacetobacter sp. SXCC-1]
gi|329761779|gb|EGG78270.1| Ribosome-binding factor A [Gluconacetobacter sp. SXCC-1]
Length = 138
Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 40/123 (32%), Positives = 70/123 (56%), Gaps = 1/123 (0%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
S+R LRV EEVR L + EF+D ++ I+++EV +S DL+ ATV+++
Sbjct: 16 SGPSQRQLRVAEEVRRVLAEIFARTEFRDPDLADVRITVTEVRISPDLKHATVFVARLGR 75
Query: 66 VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
++ AL F+R R+ +LR LR VP+L F+ DT+L +++ ++ P++
Sbjct: 76 SDVAELLPALKRVTPFLRTRLSHALR-LRGVPDLHFQPDTALDYAMEVDTMLRQPEVQRD 134
Query: 126 LEK 128
L++
Sbjct: 135 LKE 137
>gi|158421645|ref|YP_001522937.1| ribosome-binding factor A [Azorhizobium caulinodans ORS 571]
gi|172048016|sp|A8IG22|RBFA_AZOC5 RecName: Full=Ribosome-binding factor A
gi|158328534|dbj|BAF86019.1| ribosome-binding factor A [Azorhizobium caulinodans ORS 571]
Length = 145
Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 41/127 (32%), Positives = 64/127 (50%), Gaps = 1/127 (0%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
S+R LRVGE VR AL + + D ++ +I++ EV MS DL++AT ++
Sbjct: 4 QDRSGSGPSQRMLRVGELVRHALADALQRGDHLDPALAGTIITVPEVRMSPDLKIATCFV 63
Query: 61 SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
+ VI L N K +R + R + L+ VP LRF DTS +++AL+ P
Sbjct: 64 MPLGGKDVNTVIKLLAANQKLLRTEVARRV-ELKSVPSLRFLRDTSFDEGARIDALLRRP 122
Query: 121 KIPVALE 127
+ L+
Sbjct: 123 DVARDLD 129
>gi|254420363|ref|ZP_05034087.1| ribosome-binding factor A [Brevundimonas sp. BAL3]
gi|196186540|gb|EDX81516.1| ribosome-binding factor A [Brevundimonas sp. BAL3]
Length = 151
Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats.
Identities = 40/134 (29%), Positives = 73/134 (54%), Gaps = 9/134 (6%)
Query: 3 NKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL 62
+ S+R LR GE +R AL+ ++ + D ++ ++++EV +S DL+ AT ++
Sbjct: 11 SGPAGPSQRQLRAGELIRHALVDILREEDIHDEALADVSVTVTEVRLSPDLKHATCFVEP 70
Query: 63 PLD--------VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLN 114
+I ALN + KF+RG++GR L ++++ P+LRFR+D S + L+
Sbjct: 71 LGAGVEAAATTGHESEIIKALNVHAKFLRGQLGRRL-DMKFTPDLRFRHDESFDAASHLD 129
Query: 115 ALMCLPKIPVALEK 128
L P++ LE+
Sbjct: 130 RLFEDPRVRADLER 143
>gi|329113265|ref|ZP_08242048.1| Ribosome-binding factor A [Acetobacter pomorum DM001]
gi|326697406|gb|EGE49064.1| Ribosome-binding factor A [Acetobacter pomorum DM001]
Length = 154
Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats.
Identities = 39/121 (32%), Positives = 64/121 (52%), Gaps = 1/121 (0%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
S+R LRVGEEVR L V F+D + ++++EV +S D R ATV+I+
Sbjct: 24 SGPSQRQLRVGEEVRRVLAEVFARTTFRDPDLVDVALTVTEVRLSPDFRHATVFITRLGR 83
Query: 66 VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
++ AL ++R ++ +R R VPEL F+ DT+L + ++ L+ P++
Sbjct: 84 SDVAELLPALKRVAPWLRTQLAHKIRA-RTVPELHFQPDTALDTAMHMDTLLRSPEVQRD 142
Query: 126 L 126
L
Sbjct: 143 L 143
>gi|296114404|ref|ZP_06833058.1| ribosome-binding factor A [Gluconacetobacter hansenii ATCC 23769]
gi|295979165|gb|EFG85889.1| ribosome-binding factor A [Gluconacetobacter hansenii ATCC 23769]
Length = 146
Score = 146 bits (370), Expect = 8e-34, Method: Composition-based stats.
Identities = 40/125 (32%), Positives = 66/125 (52%), Gaps = 1/125 (0%)
Query: 3 NKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL 62
S+R LRV EE+R L + EF+D + I+++EV +S DL+ ATV+++
Sbjct: 22 QGASGPSQRQLRVAEEIRRVLADIFARVEFRDPELVDARITVTEVRISPDLKHATVFVAR 81
Query: 63 PLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
+ ++ AL F+R R+ +R LR VP+L F+ DT+L ++ L+ P +
Sbjct: 82 LGRSDIEALLPALKRVSSFLRSRLSHMVR-LRGVPDLHFQPDTALDYAMHVDDLLRDPAV 140
Query: 123 PVALE 127
LE
Sbjct: 141 ARDLE 145
>gi|323136841|ref|ZP_08071922.1| ribosome-binding factor A [Methylocystis sp. ATCC 49242]
gi|322398158|gb|EFY00679.1| ribosome-binding factor A [Methylocystis sp. ATCC 49242]
Length = 142
Score = 146 bits (370), Expect = 8e-34, Method: Composition-based stats.
Identities = 41/122 (33%), Positives = 71/122 (58%), Gaps = 1/122 (0%)
Query: 5 NPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL 64
+ S+R LRV E VR A ++ E D ++ + V+++S V MS DL++AT+Y+
Sbjct: 9 GAEPSQRMLRVAELVRHAFAQLLSRGEISDPVLEKHVVTVSRVKMSPDLKLATIYVMPLG 68
Query: 65 DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPV 124
VISAL+ + +F+RG I + NL++ PE+RFR D S + +++A++ ++
Sbjct: 69 GKDEPEVISALDRHKRFLRGEIAHEV-NLKFAPEIRFRIDDSFDAVSRIDAILNSERVKR 127
Query: 125 AL 126
L
Sbjct: 128 DL 129
>gi|254500779|ref|ZP_05112930.1| ribosome-binding factor A [Labrenzia alexandrii DFL-11]
gi|222436850|gb|EEE43529.1| ribosome-binding factor A [Labrenzia alexandrii DFL-11]
Length = 137
Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats.
Identities = 40/125 (32%), Positives = 67/125 (53%), Gaps = 1/125 (0%)
Query: 3 NKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL 62
+ S+R L+VGE VR L + F D + +I+I EV M+ DLR+AT +
Sbjct: 7 QDSQGPSQRQLKVGETVRKELSDIFTRGRFSDPDLDGVIITIPEVRMTPDLRLATCLVMP 66
Query: 63 PLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
+ ++V ALN + K++RG++ R L ++Y+P+LRF DT ++ L+ P +
Sbjct: 67 LGGANAEKVEKALNRSAKYLRGQVSRRL-TMKYMPDLRFVLDTRFDDDDRIGTLLHSPDV 125
Query: 123 PVALE 127
L+
Sbjct: 126 ARDLD 130
>gi|84684345|ref|ZP_01012246.1| ribosome-binding factor A [Maritimibacter alkaliphilus HTCC2654]
gi|84667324|gb|EAQ13793.1| ribosome-binding factor A [Rhodobacterales bacterium HTCC2654]
Length = 136
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 40/125 (32%), Positives = 62/125 (49%), Gaps = 1/125 (0%)
Query: 3 NKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL 62
N+ S+R LRVGE +R L V++ E D ++R I++ EV S DL++AT Y+
Sbjct: 7 NEGTGPSQRQLRVGELIRRTLSDVLMRGEIHDPDLNRMSITVGEVRTSPDLKIATAYVLP 66
Query: 63 PLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
+PD I AL N +R IG+ + NL++ P+LRF D + L +
Sbjct: 67 LGGKNPDEAIKALARNKHELRRFIGK-VTNLKFTPDLRFMIDETFDQMDATRRLFSDETV 125
Query: 123 PVALE 127
+
Sbjct: 126 QRDIH 130
>gi|258543553|ref|YP_003188986.1| ribosome-binding factor A [Acetobacter pasteurianus IFO 3283-01]
gi|256634631|dbj|BAI00607.1| ribosome-binding factor A [Acetobacter pasteurianus IFO 3283-01]
gi|256637687|dbj|BAI03656.1| ribosome-binding factor A [Acetobacter pasteurianus IFO 3283-03]
gi|256640741|dbj|BAI06703.1| ribosome-binding factor A [Acetobacter pasteurianus IFO 3283-07]
gi|256643796|dbj|BAI09751.1| ribosome-binding factor A [Acetobacter pasteurianus IFO 3283-22]
gi|256646851|dbj|BAI12799.1| ribosome-binding factor A [Acetobacter pasteurianus IFO 3283-26]
gi|256649904|dbj|BAI15845.1| ribosome-binding factor A [Acetobacter pasteurianus IFO 3283-32]
gi|256652894|dbj|BAI18828.1| ribosome-binding factor A [Acetobacter pasteurianus IFO
3283-01-42C]
gi|256655948|dbj|BAI21875.1| ribosome-binding factor A [Acetobacter pasteurianus IFO 3283-12]
Length = 154
Score = 145 bits (368), Expect = 1e-33, Method: Composition-based stats.
Identities = 39/121 (32%), Positives = 64/121 (52%), Gaps = 1/121 (0%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
S+R LRVGEEVR L V F+D + ++++EV +S D R ATV+I+
Sbjct: 24 SGPSQRQLRVGEEVRRVLAEVFARTTFRDPDLVDVDLTVTEVRLSPDFRHATVFITRLGR 83
Query: 66 VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
++ AL ++R ++ +R R VPEL F+ DT+L + ++ L+ P++
Sbjct: 84 SDVAELLPALKRVAPWLRTQLAHKIRA-RTVPELHFQPDTALDTAMHMDTLLRSPEVQRD 142
Query: 126 L 126
L
Sbjct: 143 L 143
>gi|220924487|ref|YP_002499789.1| ribosome-binding factor A [Methylobacterium nodulans ORS 2060]
gi|259552023|sp|B8IEB4|RBFA_METNO RecName: Full=Ribosome-binding factor A
gi|219949094|gb|ACL59486.1| ribosome-binding factor A [Methylobacterium nodulans ORS 2060]
Length = 135
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 42/123 (34%), Positives = 68/123 (55%), Gaps = 1/123 (0%)
Query: 4 KNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP 63
++ ++R RV E VR A+ V+ + QD ++SR VI++ EV MS DL++AT Y+
Sbjct: 6 ESAGPTQRQQRVAELVRHAIAEVLSRGDLQDPVLSRHVITVPEVRMSPDLKLATAYVMPL 65
Query: 64 LDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIP 123
VI AL N K +R + R + NL++ P+LRFR D + +++ L+ K+
Sbjct: 66 GGEDEQPVIEALERNRKVLRQEVARRV-NLKFAPDLRFRRDETFDEAARIDRLLRSDKVQ 124
Query: 124 VAL 126
L
Sbjct: 125 RDL 127
>gi|300024999|ref|YP_003757610.1| ribosome-binding factor A [Hyphomicrobium denitrificans ATCC 51888]
gi|299526820|gb|ADJ25289.1| ribosome-binding factor A [Hyphomicrobium denitrificans ATCC 51888]
Length = 132
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 43/121 (35%), Positives = 68/121 (56%), Gaps = 1/121 (0%)
Query: 5 NPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL 64
+ S+R LRVGE +R + ++ E D +++ VI+I EV +S DL++ATVY+
Sbjct: 10 SKAPSQRMLRVGELIRHKIAEMLSRGEIHDDVLASHVITIPEVRLSPDLKLATVYVMPLG 69
Query: 65 DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPV 124
VI AL N K+IR + +L NLRY P+LRFR D + + +++ L+ K+
Sbjct: 70 GNDVKPVIEALTRNKKYIRAEVAHTL-NLRYAPDLRFREDETFEEATRIDRLLDSEKVRR 128
Query: 125 A 125
Sbjct: 129 D 129
>gi|83595111|ref|YP_428863.1| ribosome-binding factor A [Rhodospirillum rubrum ATCC 11170]
gi|123525360|sp|Q2RMR9|RBFA_RHORT RecName: Full=Ribosome-binding factor A
gi|83578025|gb|ABC24576.1| ribosome-binding factor A [Rhodospirillum rubrum ATCC 11170]
Length = 164
Score = 145 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 37/125 (29%), Positives = 64/125 (51%), Gaps = 1/125 (0%)
Query: 2 KNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS 61
+ + ++R LRVGEE+R AL V +D ++ ++++EV +S DLR ATV++
Sbjct: 3 RTSDKAPTQRQLRVGEEIRHALAEVFERGTVRDPAVAGVALTVTEVRISPDLRNATVFLV 62
Query: 62 LPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
D V++ L F+R + + ++VP+LRF D S +N L+ P+
Sbjct: 63 RLGGGPLDEVLTGLRKARAFLRREVAIRIHT-KFVPDLRFESDPSFDYAEYINGLLHRPE 121
Query: 122 IPVAL 126
+ L
Sbjct: 122 VARDL 126
>gi|119385523|ref|YP_916579.1| ribosome-binding factor A [Paracoccus denitrificans PD1222]
gi|166219383|sp|A1B5T9|RBFA_PARDP RecName: Full=Ribosome-binding factor A
gi|119375290|gb|ABL70883.1| ribosome-binding factor A [Paracoccus denitrificans PD1222]
Length = 138
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 36/124 (29%), Positives = 61/124 (49%), Gaps = 1/124 (0%)
Query: 4 KNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP 63
S+R LRVGE +R L V+L + D ++R I++ EV S DL+VAT Y+
Sbjct: 8 SGTGPSQRQLRVGELIRRTLSDVLLRGDVHDPELNRHSITVGEVRTSPDLKVATAYVLPL 67
Query: 64 LDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIP 123
+ ++AL N +R + +++ L+Y P+LRF D + L+ ++
Sbjct: 68 GGHDAEEALAALRRNAGELRHLVAKAM-TLKYAPQLRFVLDETFDRMDDTRRLLSEDRVR 126
Query: 124 VALE 127
+E
Sbjct: 127 RDVE 130
>gi|162147161|ref|YP_001601622.1| ribosome-binding factor A [Gluconacetobacter diazotrophicus PAl 5]
gi|182676540|sp|A9HF21|RBFA_GLUDA RecName: Full=Ribosome-binding factor A
gi|161785738|emb|CAP55309.1| putative ribosome-binding factor A [Gluconacetobacter
diazotrophicus PAl 5]
Length = 136
Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats.
Identities = 41/122 (33%), Positives = 68/122 (55%), Gaps = 1/122 (0%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
++R LRVGEEVR L + EF+D + I+++EV +S DL+ AT +++
Sbjct: 16 SGPTQRQLRVGEEVRRMLADLFARTEFRDPELVDVRITVTEVRISPDLKHATAFVARLGR 75
Query: 66 VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
+ ++ AL F+R R+ LR LR VPE+ F+ DT+L +++AL+ P +
Sbjct: 76 SDVETLLPALKRVAPFLRSRLSTGLR-LRGVPEIHFQPDTALDYAMEVDALLRQPDVARD 134
Query: 126 LE 127
L+
Sbjct: 135 LD 136
>gi|296285007|ref|ZP_06863005.1| ribosome-binding factor A [Citromicrobium bathyomarinum JL354]
Length = 137
Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats.
Identities = 40/121 (33%), Positives = 66/121 (54%), Gaps = 1/121 (0%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
+ S R L+VGE VR L ++ E D +S +S++EV M+ DL+ A+VY+ L
Sbjct: 10 QQSVRVLKVGERVRHILSELLTRGEVHDETLSAHSVSVTEVKMTPDLKHASVYVKPLLGE 69
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVAL 126
D V+ AL N F + + + L L++ P+L+FR D S + ++ L+ PK+ L
Sbjct: 70 DEDVVVKALRTNTAFFQREVAKRL-GLKFAPKLQFRPDESFEEADRIERLLNDPKVARDL 128
Query: 127 E 127
+
Sbjct: 129 D 129
>gi|254477757|ref|ZP_05091143.1| ribosome-binding factor A [Ruegeria sp. R11]
gi|214032000|gb|EEB72835.1| ribosome-binding factor A [Ruegeria sp. R11]
Length = 131
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 1/123 (0%)
Query: 3 NKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL 62
N+ S+R LRVGE +R AL + + D ++R I++ EV ++ DLR+AT Y+
Sbjct: 7 NEGAGPSQRQLRVGELIRRALSEIFTRGDIHDPDLNRMSITVGEVRVTSDLRIATAYVLP 66
Query: 63 PLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
D ++ + N +R IG+ L L++ PELRF+ D + ++ +
Sbjct: 67 LGGKGQDEILKLMARNKGELRRMIGKKL-GLKFTPELRFQLDETFDRMDDTRRILSQDAV 125
Query: 123 PVA 125
Sbjct: 126 RRD 128
>gi|161506149|ref|YP_001573261.1| ribosome-binding factor A [Salmonella enterica subsp. arizonae
serovar 62:z4,z23:-- str. RSK2980]
gi|160867496|gb|ABX24119.1| hypothetical protein SARI_04339 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 145
Score = 143 bits (363), Expect = 5e-33, Method: Composition-based stats.
Identities = 42/126 (33%), Positives = 64/126 (50%), Gaps = 7/126 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K R RV +E++ + +IL E +D + + ++S V MS DL A VY++ D
Sbjct: 14 AKEFGRPQRVAQEMQKEIA-IILQREIKDPRLG-MMTTVSGVEMSRDLAYAKVYVTFLND 71
Query: 66 VSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
D V I AL FIR +G+++R LR VPEL F YD SL +++ L+ +
Sbjct: 72 KDEDAVKAGIKALQEASGFIRSLLGKAMR-LRIVPELTFFYDNSLVEGMRMSNLVTN-VV 129
Query: 123 PVALEK 128
E+
Sbjct: 130 KHDEER 135
>gi|254463718|ref|ZP_05077129.1| ribosome-binding factor A [Rhodobacterales bacterium Y4I]
gi|206684626|gb|EDZ45108.1| ribosome-binding factor A [Rhodobacterales bacterium Y4I]
Length = 131
Score = 143 bits (363), Expect = 5e-33, Method: Composition-based stats.
Identities = 36/124 (29%), Positives = 61/124 (49%), Gaps = 1/124 (0%)
Query: 5 NPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL 64
P S+R LRVGE +R L V+ + D ++R I++ EV S DL++AT Y+
Sbjct: 9 GPGPSQRQLRVGELIRRTLSEVLARGDVHDPDLNRMSITVGEVRTSPDLKIATAYVLPLG 68
Query: 65 DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPV 124
+ V+ L N +R +G+ L L++ P+LRFR D + ++ +
Sbjct: 69 GKGQEDVLKLLARNKSELRRMVGKKL-GLKFTPDLRFRLDETFDQMDDTRRMLSQDAVRR 127
Query: 125 ALEK 128
+E+
Sbjct: 128 DVEE 131
>gi|209544217|ref|YP_002276446.1| ribosome-binding factor A [Gluconacetobacter diazotrophicus PAl 5]
gi|209531894|gb|ACI51831.1| ribosome-binding factor A [Gluconacetobacter diazotrophicus PAl 5]
Length = 145
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 41/122 (33%), Positives = 68/122 (55%), Gaps = 1/122 (0%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
++R LRVGEEVR L + EF+D + I+++EV +S DL+ AT +++
Sbjct: 25 SGPTQRQLRVGEEVRRMLADLFARTEFRDPELVDVRITVTEVRISPDLKHATAFVARLGR 84
Query: 66 VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
+ ++ AL F+R R+ LR LR VPE+ F+ DT+L +++AL+ P +
Sbjct: 85 SDVETLLPALKRVAPFLRSRLSTGLR-LRGVPEIHFQPDTALDYAMEVDALLRQPDVARD 143
Query: 126 LE 127
L+
Sbjct: 144 LD 145
>gi|163734260|ref|ZP_02141700.1| ribosome-binding factor A [Roseobacter litoralis Och 149]
gi|161392268|gb|EDQ16597.1| ribosome-binding factor A [Roseobacter litoralis Och 149]
Length = 140
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 35/122 (28%), Positives = 62/122 (50%), Gaps = 1/122 (0%)
Query: 4 KNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP 63
P S+R LRVGE +R AL V+ + D ++R +++ EV +S DL++AT Y+
Sbjct: 8 TGPGPSQRQLRVGETIRRALSDVLARGDVHDTDLNRLSVTVGEVRVSPDLKIATAYVLPL 67
Query: 64 LDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIP 123
D VI+ L N +R + + L L++ P+LRF+ D + + ++ ++
Sbjct: 68 GGQGRDEVIALLARNKGELRRLVAKKL-TLKFAPDLRFQLDETFDRMDETREMLNRAEVK 126
Query: 124 VA 125
Sbjct: 127 RD 128
>gi|260432190|ref|ZP_05786161.1| ribosome-binding factor A [Silicibacter lacuscaerulensis ITI-1157]
gi|260416018|gb|EEX09277.1| ribosome-binding factor A [Silicibacter lacuscaerulensis ITI-1157]
Length = 131
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 36/124 (29%), Positives = 61/124 (49%), Gaps = 1/124 (0%)
Query: 5 NPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL 64
P S+R LRVGE +R L V+ + D ++R I++ EV S DL++AT Y+
Sbjct: 9 GPGPSQRQLRVGELIRRTLSEVLARGDVHDPDLNRLSITVGEVRTSPDLKIATAYVLPLG 68
Query: 65 DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPV 124
+ VI L N +R +G+ + L++ P+LRFR D + ++ +
Sbjct: 69 GKGQETVIELLARNKGELRRMVGKKV-GLKFAPDLRFRLDETFDRMDDTRRMLEQDAVRR 127
Query: 125 ALEK 128
L++
Sbjct: 128 DLDE 131
>gi|312112865|ref|YP_004010461.1| ribosome-binding factor A [Rhodomicrobium vannielii ATCC 17100]
gi|311217994|gb|ADP69362.1| ribosome-binding factor A [Rhodomicrobium vannielii ATCC 17100]
Length = 128
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 41/122 (33%), Positives = 69/122 (56%), Gaps = 1/122 (0%)
Query: 5 NPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL 64
+ S+R LR GE +R AL + + +D + +I+++EV +S DL+ ATV+ S
Sbjct: 7 SKGPSQRQLRAGELLRHALAEIFRLEDIEDDELKGQLITVAEVRVSPDLKHATVFASALG 66
Query: 65 DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPV 124
D + ALN + +F+RG + R + L+YVPEL FR D +L + +++ L+ P +
Sbjct: 67 GKPGDVIAKALNRHARFLRGELARRI-ELKYVPELVFRADHALDAAERIDELLRSPDVAR 125
Query: 125 AL 126
L
Sbjct: 126 DL 127
>gi|148259246|ref|YP_001233373.1| ribosome-binding factor A [Acidiphilium cryptum JF-5]
gi|326402399|ref|YP_004282480.1| ribosome-binding factor A [Acidiphilium multivorum AIU301]
gi|172047759|sp|A5FV22|RBFA_ACICJ RecName: Full=Ribosome-binding factor A
gi|146400927|gb|ABQ29454.1| ribosome-binding factor A [Acidiphilium cryptum JF-5]
gi|325049260|dbj|BAJ79598.1| ribosome-binding factor A [Acidiphilium multivorum AIU301]
Length = 140
Score = 143 bits (362), Expect = 7e-33, Method: Composition-based stats.
Identities = 42/120 (35%), Positives = 68/120 (56%), Gaps = 1/120 (0%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
S+R RV E++R L + EF+D ++ I+++EV MS DL+ ATV++S
Sbjct: 16 GPSQRQRRVAEDLRHRLAELFARTEFRDPELAGVHITVAEVRMSPDLKHATVFVSRLGAT 75
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVAL 126
DR + AL F+RG IG LR +++VP+L F+ D +L ++N L+ P++ L
Sbjct: 76 DIDRYLPALKRIAPFLRGEIGHGLR-MKFVPDLHFQPDHALDEATRINELLHRPEVMRDL 134
>gi|84500520|ref|ZP_00998769.1| ribosome-binding factor A [Oceanicola batsensis HTCC2597]
gi|84391473|gb|EAQ03805.1| ribosome-binding factor A [Oceanicola batsensis HTCC2597]
Length = 134
Score = 143 bits (362), Expect = 7e-33, Method: Composition-based stats.
Identities = 40/128 (31%), Positives = 65/128 (50%), Gaps = 1/128 (0%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
+ N P S+R LRVGE +R AL +++ + D ++R I++ EV S DL+VAT ++
Sbjct: 8 IHNDGPGPSQRQLRVGETIRRALSEILMRGDIHDPDLNRLSITVGEVRTSPDLKVATAFV 67
Query: 61 SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
D V+ L N +R IG+ L L++ P+LRFR D + + L
Sbjct: 68 LPLGGTGQDVVVDLLARNKGELRRMIGKKL-GLKFTPDLRFRVDDTFDRMDETRRLFQQD 126
Query: 121 KIPVALEK 128
+ +E+
Sbjct: 127 DVRRDVEE 134
>gi|110678026|ref|YP_681033.1| ribosome-binding factor A [Roseobacter denitrificans OCh 114]
gi|123172936|sp|Q16CE6|RBFA_ROSDO RecName: Full=Ribosome-binding factor A
gi|109454142|gb|ABG30347.1| ribosome-binding factor A [Roseobacter denitrificans OCh 114]
Length = 143
Score = 143 bits (361), Expect = 9e-33, Method: Composition-based stats.
Identities = 35/122 (28%), Positives = 61/122 (50%), Gaps = 1/122 (0%)
Query: 4 KNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP 63
P S+R LRVGE +R AL V+ + D ++R +++ EV S DL++AT Y+
Sbjct: 11 TGPGPSQRQLRVGETIRRALSDVLARGDVHDTDLNRLSVTVGEVRASPDLKIATAYVLPL 70
Query: 64 LDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIP 123
D VI+ L N +R + + L L++ P+LRF+ D + + ++ ++
Sbjct: 71 GGQGKDEVIALLARNKGELRRLVAKKL-TLKFAPDLRFQLDETFDRMDETREMLNRAEVK 129
Query: 124 VA 125
Sbjct: 130 RD 131
>gi|295687490|ref|YP_003591183.1| ribosome-binding factor A [Caulobacter segnis ATCC 21756]
gi|295429393|gb|ADG08565.1| ribosome-binding factor A [Caulobacter segnis ATCC 21756]
Length = 148
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 41/128 (32%), Positives = 67/128 (52%), Gaps = 5/128 (3%)
Query: 2 KNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS 61
K S+R LR GE +R AL+ ++ E QD + +++SEV MS DL+ A ++
Sbjct: 9 KGAATGPSQRQLRAGELIRHALVEILREEELQDEALHNISVTVSEVRMSPDLKHAVCFVE 68
Query: 62 LPL----DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
VI LN KF+RGR+GRS+ ++++ P+L+F +D S + ++ L
Sbjct: 69 PLGAGLTGEDTTEVIKGLNRVSKFLRGRLGRSI-DMKFTPDLKFIHDESFGTAAYMDKLF 127
Query: 118 CLPKIPVA 125
PK+
Sbjct: 128 LDPKVQQD 135
>gi|254510483|ref|ZP_05122550.1| ribosome-binding factor A [Rhodobacteraceae bacterium KLH11]
gi|221534194|gb|EEE37182.1| ribosome-binding factor A [Rhodobacteraceae bacterium KLH11]
Length = 131
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 36/124 (29%), Positives = 60/124 (48%), Gaps = 1/124 (0%)
Query: 5 NPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL 64
P S+R LRVGE +R L V+ + D ++R I++ EV S DL++AT Y+
Sbjct: 9 GPGPSQRQLRVGELIRRTLSEVLARGDVHDPDLNRMSITVGEVRTSPDLKIATAYVLPLG 68
Query: 65 DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPV 124
+ VI L N +R +G+ + L++ P+LRFR D + + +
Sbjct: 69 GKGQEDVIELLARNKGELRRMVGKKV-GLKFSPDLRFRLDDTFDRLDDTRRMFQQDAVRR 127
Query: 125 ALEK 128
L++
Sbjct: 128 DLDE 131
>gi|114799473|ref|YP_758849.1| ribosome-binding factor A [Hyphomonas neptunium ATCC 15444]
gi|123323719|sp|Q0C5Z4|RBFA_HYPNA RecName: Full=Ribosome-binding factor A
gi|114739647|gb|ABI77772.1| ribosome-binding factor A [Hyphomonas neptunium ATCC 15444]
Length = 135
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 40/123 (32%), Positives = 68/123 (55%), Gaps = 4/123 (3%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS 67
S+R LR GE VR AL +I +F+D +S ++++ EV S DL+ A ++++ D S
Sbjct: 11 PSQRQLRAGEIVRHALAEIISREDFRDPDLSNVIVTVGEVRCSPDLKHANIFVTPLGDDS 70
Query: 68 PD---RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPV 124
+ R+ AL F+R R+GR + L++ PEL F D+S ++ L+ P++
Sbjct: 71 EEGRKRLADALTRAKGFLRTRLGREI-ELKFTPELHFIADSSYDEATAIDRLLNDPRVRR 129
Query: 125 ALE 127
+E
Sbjct: 130 DVE 132
>gi|300897931|ref|ZP_07116310.1| ribosome-binding factor A [Escherichia coli MS 198-1]
gi|301022022|ref|ZP_07185965.1| ribosome-binding factor A [Escherichia coli MS 69-1]
gi|284923191|emb|CBG36285.1| ribosome-binding factor A [Escherichia coli 042]
gi|300358361|gb|EFJ74231.1| ribosome-binding factor A [Escherichia coli MS 198-1]
gi|300397737|gb|EFJ81275.1| ribosome-binding factor A [Escherichia coli MS 69-1]
Length = 143
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 42/126 (33%), Positives = 64/126 (50%), Gaps = 7/126 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K R RV +E++ + +IL E +D + + ++S V MS DL A VY++ D
Sbjct: 12 AKEFGRPQRVAQEMQKEIA-LILQREIKDPRLG-MMTTVSGVEMSRDLAYAKVYVTFLND 69
Query: 66 VSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
D V I AL FIR +G+++R LR VPEL F YD SL +++ L+ +
Sbjct: 70 KDEDAVKAGIKALQEASGFIRSLLGKAMR-LRIVPELTFFYDNSLVEGMRMSNLVTS-VV 127
Query: 123 PVALEK 128
E+
Sbjct: 128 KHDEER 133
>gi|99079927|ref|YP_612081.1| ribosome-binding factor A [Ruegeria sp. TM1040]
gi|259417241|ref|ZP_05741160.1| ribosome-binding factor A [Silicibacter sp. TrichCH4B]
gi|122398485|sp|Q1GKJ7|RBFA_SILST RecName: Full=Ribosome-binding factor A
gi|99036207|gb|ABF62819.1| ribosome-binding factor A [Ruegeria sp. TM1040]
gi|259346147|gb|EEW57961.1| ribosome-binding factor A [Silicibacter sp. TrichCH4B]
Length = 131
Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 40/129 (31%), Positives = 61/129 (47%), Gaps = 4/129 (3%)
Query: 2 KNK---NPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATV 58
KNK P S+R LRVGE +R L V+ + D ++R I++ EV S DL++AT
Sbjct: 3 KNKFHDGPGPSQRQLRVGEVIRRTLSEVLARGDIHDPELNRLSITVGEVRTSPDLKIATA 62
Query: 59 YISLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
Y+ + V+ L N +R IG+ L++ P+LRF+ D + L
Sbjct: 63 YVLPLGGKGQEDVLQLLARNKSELRRAIGKK-TGLKFTPDLRFQIDETFDRMDDTRRLFN 121
Query: 119 LPKIPVALE 127
+ LE
Sbjct: 122 QDAVRRDLE 130
>gi|83945012|ref|ZP_00957378.1| ribosome-binding factor A [Oceanicaulis alexandrii HTCC2633]
gi|83851794|gb|EAP89649.1| ribosome-binding factor A [Oceanicaulis alexandrii HTCC2633]
Length = 140
Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 41/120 (34%), Positives = 65/120 (54%), Gaps = 1/120 (0%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS 67
S+R LR GE VR A+ +I D ++ ++I+E +S DLR ATVY+ L
Sbjct: 17 QSQRQLRAGELVRRAVSDIIREGRVHDPHVNTAAVTITEARVSPDLRHATVYVDLLGGGD 76
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALE 127
+ V +ALN FI+ +GR + L++ P+LRF D + +++AL+ P + LE
Sbjct: 77 REAVATALNHAAGFIQRELGRQI-ELKFTPKLRFAVDDRIDDVREVDALLDRPSVKRDLE 135
>gi|149912793|ref|ZP_01901327.1| ribosome-binding factor A [Roseobacter sp. AzwK-3b]
gi|149813199|gb|EDM73025.1| ribosome-binding factor A [Roseobacter sp. AzwK-3b]
Length = 134
Score = 141 bits (357), Expect = 2e-32, Method: Composition-based stats.
Identities = 40/123 (32%), Positives = 65/123 (52%), Gaps = 1/123 (0%)
Query: 5 NPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL 64
S+R LRVGE VR L +++ + D ++R +++ EV +S DLR+AT Y+
Sbjct: 12 GQGPSQRQLRVGELVRRTLSDLLMRGDVHDPELNRMSVTVGEVRVSPDLRIATAYVLPLG 71
Query: 65 DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPV 124
++VI L N +R IG+ L +L+YVP+LRFR D + + + K+
Sbjct: 72 GDGQEQVIDLLARNRGELRRLIGKKL-DLKYVPDLRFRIDETFDRMDETRRMFADEKVRR 130
Query: 125 ALE 127
+E
Sbjct: 131 DVE 133
>gi|149203493|ref|ZP_01880463.1| ribosome-binding factor A [Roseovarius sp. TM1035]
gi|149143326|gb|EDM31365.1| ribosome-binding factor A [Roseovarius sp. TM1035]
Length = 134
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 38/123 (30%), Positives = 62/123 (50%), Gaps = 1/123 (0%)
Query: 5 NPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL 64
P S+R LRVGE +R L V++ + D ++R +++ EV S DL++AT Y+
Sbjct: 12 GPGPSQRQLRVGELIRRTLSEVLMRGDIHDPDLNRISVTVGEVRTSSDLKIATAYVMPLG 71
Query: 65 DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPV 124
D +I+ L N +R IG+ + L+Y P+LRFR D + + L +
Sbjct: 72 GEGQDDLIALLARNKNELRRMIGKKV-GLKYAPDLRFRLDETFDQMDETRRLFDQDTVRR 130
Query: 125 ALE 127
+E
Sbjct: 131 DVE 133
>gi|163739812|ref|ZP_02147219.1| ribosome-binding factor A [Phaeobacter gallaeciensis BS107]
gi|163744093|ref|ZP_02151459.1| ribosome-binding factor A [Phaeobacter gallaeciensis 2.10]
gi|161382640|gb|EDQ07043.1| ribosome-binding factor A [Phaeobacter gallaeciensis 2.10]
gi|161386846|gb|EDQ11208.1| ribosome-binding factor A [Phaeobacter gallaeciensis BS107]
Length = 131
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 34/125 (27%), Positives = 59/125 (47%), Gaps = 1/125 (0%)
Query: 4 KNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP 63
+ S+R LRVGE +R AL + + D ++R I++ EV S DLR+AT Y+
Sbjct: 8 EGSGPSQRQLRVGELIRRALSEIFARGDLHDPDLNRLSITVGEVRTSPDLRIATAYVLPL 67
Query: 64 LDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIP 123
+ + + N +R IG+ L L++ PELRF+ D + ++ +
Sbjct: 68 GGKGQEDTLKLMARNKGELRRMIGKKL-ALKFTPELRFQLDDTFDRMDDTRRMLSQDAVR 126
Query: 124 VALEK 128
+ +
Sbjct: 127 RDIGE 131
>gi|89056527|ref|YP_511978.1| ribosome-binding factor A [Jannaschia sp. CCS1]
gi|123285867|sp|Q28K09|RBFA_JANSC RecName: Full=Ribosome-binding factor A
gi|88866076|gb|ABD56953.1| ribosome-binding factor A [Jannaschia sp. CCS1]
Length = 143
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 39/124 (31%), Positives = 63/124 (50%), Gaps = 1/124 (0%)
Query: 5 NPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL 64
P S+R LRVGE +R L V+ + D ++ I+++EV S DL++ATVY+
Sbjct: 9 GPSKSQRQLRVGELIRRTLSTVLARADVHDPALNAMSITVAEVRTSSDLKIATVYVMPLG 68
Query: 65 DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPV 124
D I AL N +R +G+ L+ L+Y+P+LRF D + ++ +
Sbjct: 69 GSGKDEAIEALKRNKGELRRLLGKDLK-LKYLPDLRFVIDQTFDQMDATREMLARADVRR 127
Query: 125 ALEK 128
+EK
Sbjct: 128 DVEK 131
>gi|218515711|ref|ZP_03512551.1| ribosome-binding factor A [Rhizobium etli 8C-3]
Length = 116
Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats.
Identities = 49/110 (44%), Positives = 72/110 (65%)
Query: 18 EVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNC 77
+VR+A+ V+ E +D +I VISISEV MS DL++AT Y++ VI ALN
Sbjct: 1 QVRAAITQVLQRGEVRDDIIEATVISISEVRMSPDLKIATAYVTPLGVSDHSIVIEALNR 60
Query: 78 NIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALE 127
+ KFIRGR+G LR ++Y+PE+RFR DTS +Y K++ L+ P++ L+
Sbjct: 61 HAKFIRGRLGPQLRQMKYMPEVRFRDDTSFDNYKKIDELLRSPEVSRDLD 110
>gi|296448275|ref|ZP_06890169.1| ribosome-binding factor A [Methylosinus trichosporium OB3b]
gi|296254227|gb|EFH01360.1| ribosome-binding factor A [Methylosinus trichosporium OB3b]
Length = 129
Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats.
Identities = 40/117 (34%), Positives = 66/117 (56%), Gaps = 1/117 (0%)
Query: 12 ALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRV 71
LRV E VR +L ++ E D ++ V+++S V MS DL++ATVY+ + V
Sbjct: 1 MLRVAELVRHSLAQMLSRGEIVDPVLETHVVTVSRVAMSPDLKLATVYVMPLGGKDGEEV 60
Query: 72 ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALEK 128
+ A + KF+RG I + NL++ PE+RFR D S + +++AL+ ++ LE
Sbjct: 61 VRAFERHKKFLRGEIAHHV-NLKFAPEVRFRIDDSFDNVARIDALLNSERVRRDLEH 116
>gi|215488485|ref|YP_002330916.1| ribosome-binding factor A [Escherichia coli O127:H6 str. E2348/69]
gi|312968494|ref|ZP_07782703.1| ribosome-binding factor A [Escherichia coli 2362-75]
gi|254789748|sp|B7UJ62|RBFA_ECO27 RecName: Full=Ribosome-binding factor A
gi|215266557|emb|CAS10996.1| 30s ribosome binding factor RbfA [Escherichia coli O127:H6 str.
E2348/69]
gi|312286712|gb|EFR14623.1| ribosome-binding factor A [Escherichia coli 2362-75]
Length = 133
Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats.
Identities = 42/126 (33%), Positives = 64/126 (50%), Gaps = 7/126 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K R RV +E++ + +IL E +D + + ++S V MS DL A VY++ D
Sbjct: 2 AKEFGRPQRVAQEMQKEIA-LILQREIKDPRLG-MMTTVSGVEMSRDLAYAKVYVTFLND 59
Query: 66 VSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
D V I AL FIR +G+++R LR VPEL F YD SL +++ L+ +
Sbjct: 60 KDEDAVKAGIKALQEASGFIRSLLGKAMR-LRIVPELTFFYDNSLVEGMRMSNLVTS-VV 117
Query: 123 PVALEK 128
E+
Sbjct: 118 KHDEER 123
>gi|237706080|ref|ZP_04536561.1| ribosome-binding factor A [Escherichia sp. 3_2_53FAA]
gi|254038333|ref|ZP_04872391.1| ribosome-binding factor A [Escherichia sp. 1_1_43]
gi|293412542|ref|ZP_06655265.1| ribosome-binding factor A [Escherichia coli B354]
gi|293416600|ref|ZP_06659239.1| ribosome-binding factor A [Escherichia coli B185]
gi|332280002|ref|ZP_08392415.1| ribosome-binding factor A [Shigella sp. D9]
gi|26110178|gb|AAN82364.1|AE016767_124 Ribosome-binding factor A [Escherichia coli CFT073]
gi|91074162|gb|ABE09043.1| ribosome-binding factor A [Escherichia coli UTI89]
gi|226839957|gb|EEH71978.1| ribosome-binding factor A [Escherichia sp. 1_1_43]
gi|226899120|gb|EEH85379.1| ribosome-binding factor A [Escherichia sp. 3_2_53FAA]
gi|291431956|gb|EFF04939.1| ribosome-binding factor A [Escherichia coli B185]
gi|291469313|gb|EFF11804.1| ribosome-binding factor A [Escherichia coli B354]
gi|332102354|gb|EGJ05700.1| ribosome-binding factor A [Shigella sp. D9]
Length = 139
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 42/126 (33%), Positives = 64/126 (50%), Gaps = 7/126 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K R RV +E++ + +IL E +D + + ++S V MS DL A VY++ D
Sbjct: 8 AKEFGRPQRVAQEMQKEIA-LILQREIKDPRLG-MMTTVSGVEMSRDLAYAKVYVTFLND 65
Query: 66 VSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
D V I AL FIR +G+++R LR VPEL F YD SL +++ L+ +
Sbjct: 66 KDEDAVKAGIKALQEASGFIRSLLGKAMR-LRIVPELTFFYDNSLVEGMRMSNLVTS-VV 123
Query: 123 PVALEK 128
E+
Sbjct: 124 KHDEER 129
>gi|114766563|ref|ZP_01445519.1| ribosome-binding factor A [Pelagibaca bermudensis HTCC2601]
gi|114541179|gb|EAU44231.1| ribosome-binding factor A [Roseovarius sp. HTCC2601]
Length = 131
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 37/126 (29%), Positives = 61/126 (48%), Gaps = 1/126 (0%)
Query: 3 NKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL 62
P S+R LRVGE +R L V+ + D ++R I++ EV +S DL+VAT Y+
Sbjct: 7 QDGPGPSQRQLRVGELIRRTLSEVLTRGDIHDPELNRLSITVGEVTVSPDLKVATAYVVP 66
Query: 63 PLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
PD + L N +R + + L L++ PE+RF+ D + + L +
Sbjct: 67 LGGGKPDEMFDLLKRNKSELRRAVSKGL-TLKFAPEIRFKLDETFDRLDETRRLFSQDAV 125
Query: 123 PVALEK 128
+E+
Sbjct: 126 RRDVEE 131
>gi|315497231|ref|YP_004086035.1| ribosome-binding factor a [Asticcacaulis excentricus CB 48]
gi|315415243|gb|ADU11884.1| ribosome-binding factor A [Asticcacaulis excentricus CB 48]
Length = 156
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 43/134 (32%), Positives = 67/134 (50%), Gaps = 10/134 (7%)
Query: 2 KNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS 61
K + S+R LR GE VR AL+ ++ E D + I+I+EV S DLR ATV++
Sbjct: 12 KAEAQGPSQRQLRAGELVRHALVEILREEELHDEALQGVSITITEVRCSPDLRHATVFVE 71
Query: 62 LPL---------DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWK 112
I ALN + KF+RG +G + ++++ P+LRF +D S +
Sbjct: 72 PLGAGLGGVTISKDKIAPAIEALNRHAKFLRGILG-RMIDMKFTPDLRFLHDESFNEAAR 130
Query: 113 LNALMCLPKIPVAL 126
++AL P + L
Sbjct: 131 IDALFMRPDVARDL 144
>gi|85703968|ref|ZP_01035071.1| ribosome-binding factor A [Roseovarius sp. 217]
gi|85671288|gb|EAQ26146.1| ribosome-binding factor A [Roseovarius sp. 217]
Length = 131
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 38/123 (30%), Positives = 62/123 (50%), Gaps = 1/123 (0%)
Query: 5 NPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL 64
P S+R LRVGE +R L V++ + D ++R +++ EV S DL++AT Y+
Sbjct: 9 GPGPSQRQLRVGELIRRTLSEVLMRGDIHDPDLNRISVTVGEVRTSSDLKIATAYVMPLG 68
Query: 65 DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPV 124
D +I+ L N +R IG+ + L+Y P+LRFR D + + L +
Sbjct: 69 GEGQDDLIALLARNKHELRRMIGKKV-GLKYAPDLRFRLDETFDQIDETRRLFDQDTVRR 127
Query: 125 ALE 127
+E
Sbjct: 128 DVE 130
>gi|56698646|ref|YP_169023.1| ribosome-binding factor A [Ruegeria pomeroyi DSS-3]
gi|61214678|sp|Q5LLT6|RBFA_SILPO RecName: Full=Ribosome-binding factor A
gi|56680383|gb|AAV97049.1| ribosome-binding factor A [Ruegeria pomeroyi DSS-3]
Length = 131
Score = 140 bits (355), Expect = 4e-32, Method: Composition-based stats.
Identities = 37/124 (29%), Positives = 61/124 (49%), Gaps = 1/124 (0%)
Query: 5 NPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL 64
P S+R LRVGE +R L V+ + D ++R I++ EV S DL++AT Y+
Sbjct: 9 GPGPSQRQLRVGEVIRRTLSEVLARGDVHDPDLNRMSITVGEVRTSPDLKIATAYVLPLG 68
Query: 65 DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPV 124
+ V+ L+ N +R IG+ L L++ P+LRFR D + + +
Sbjct: 69 GRGQEDVVQLLSRNKGELRRMIGKKL-GLKFTPDLRFRLDETFDRLDDTRRMFDQDAVRR 127
Query: 125 ALEK 128
L++
Sbjct: 128 DLDE 131
>gi|170765473|ref|ZP_02900284.1| ribosome-binding factor A [Escherichia albertii TW07627]
gi|170124619|gb|EDS93550.1| ribosome-binding factor A [Escherichia albertii TW07627]
Length = 133
Score = 140 bits (355), Expect = 4e-32, Method: Composition-based stats.
Identities = 42/126 (33%), Positives = 64/126 (50%), Gaps = 7/126 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K R RV +E++ + +IL E +D + + ++S V MS DL A VY++ D
Sbjct: 2 AKEFGRPQRVAQEMQKEIA-IILQREIKDPRLG-MMTTVSGVEMSRDLAYAKVYVTFLND 59
Query: 66 VSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
D V I AL FIR +G+++R LR VPEL F YD SL +++ L+ +
Sbjct: 60 KDEDAVKAGIKALQEASGFIRSLLGKAMR-LRIVPELTFFYDNSLVEGMRMSNLVTS-VV 117
Query: 123 PVALEK 128
E+
Sbjct: 118 KHDEER 123
>gi|283788205|ref|YP_003368070.1| ribosome-binding factor A [Citrobacter rodentium ICC168]
gi|182676606|sp|A9MP37|RBFA_SALAR RecName: Full=Ribosome-binding factor A
gi|282951659|emb|CBG91359.1| ribosome-binding factor A [Citrobacter rodentium ICC168]
Length = 133
Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats.
Identities = 42/126 (33%), Positives = 64/126 (50%), Gaps = 7/126 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K R RV +E++ + +IL E +D + + ++S V MS DL A VY++ D
Sbjct: 2 AKEFGRPQRVAQEMQKEIA-IILQREIKDPRLG-MMTTVSGVEMSRDLAYAKVYVTFLND 59
Query: 66 VSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
D V I AL FIR +G+++R LR VPEL F YD SL +++ L+ +
Sbjct: 60 KDEDAVKAGIKALQEASGFIRSLLGKAMR-LRIVPELTFFYDNSLVEGMRMSNLVTN-VV 117
Query: 123 PVALEK 128
E+
Sbjct: 118 KHDEER 123
>gi|291616011|ref|YP_003518753.1| RbfA [Pantoea ananatis LMG 20103]
gi|291151041|gb|ADD75625.1| RbfA [Pantoea ananatis LMG 20103]
gi|327396262|dbj|BAK13684.1| ribosome-binding factor A RbfA [Pantoea ananatis AJ13355]
Length = 140
Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats.
Identities = 38/128 (29%), Positives = 67/128 (52%), Gaps = 7/128 (5%)
Query: 4 KNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP 63
K K R RV +E++ + +IL E +D + ++++S V +S DL A V+++
Sbjct: 5 KMAKEFGRPQRVSQELQKEIA-MILQREIKDPRLG-MMVTVSGVEVSRDLAYAKVFVTFL 62
Query: 64 LDVSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
D + V + AL +IR +G+++R LR VPEL F YD SL +++ L+
Sbjct: 63 NDKDEEAVQNGLKALKEASGYIRTLLGKAMR-LRIVPELTFFYDNSLIEGMRMSNLVTN- 120
Query: 121 KIPVALEK 128
+ +E+
Sbjct: 121 VVKKDVER 128
>gi|15803709|ref|NP_289743.1| ribosome-binding factor A [Escherichia coli O157:H7 EDL933]
gi|15833302|ref|NP_312075.1| ribosome-binding factor A [Escherichia coli O157:H7 str. Sakai]
gi|16131059|ref|NP_417636.1| 30s ribosome binding factor [Escherichia coli str. K-12 substr.
MG1655]
gi|30064507|ref|NP_838678.1| ribosome-binding factor A [Shigella flexneri 2a str. 2457T]
gi|56480279|ref|NP_708968.2| ribosome-binding factor A [Shigella flexneri 2a str. 301]
gi|74313704|ref|YP_312123.1| ribosome-binding factor A [Shigella sonnei Ss046]
gi|82545593|ref|YP_409540.1| ribosome-binding factor A [Shigella boydii Sb227]
gi|82778481|ref|YP_404830.1| ribosome-binding factor A [Shigella dysenteriae Sd197]
gi|89109932|ref|AP_003712.1| 30s ribosome binding factor [Escherichia coli str. K-12 substr.
W3110]
gi|110643408|ref|YP_671138.1| ribosome-binding factor A [Escherichia coli 536]
gi|110807036|ref|YP_690556.1| ribosome-binding factor A [Shigella flexneri 5 str. 8401]
gi|117625463|ref|YP_858786.1| ribosome-binding factor A [Escherichia coli APEC O1]
gi|157154949|ref|YP_001464643.1| ribosome-binding factor A [Escherichia coli E24377A]
gi|157162652|ref|YP_001459970.1| ribosome-binding factor A [Escherichia coli HS]
gi|161486110|ref|NP_755790.2| ribosome-binding factor A [Escherichia coli CFT073]
gi|162138367|ref|YP_542574.2| ribosome-binding factor A [Escherichia coli UTI89]
gi|168749237|ref|ZP_02774259.1| ribosome-binding factor A [Escherichia coli O157:H7 str. EC4113]
gi|168754148|ref|ZP_02779155.1| ribosome-binding factor A [Escherichia coli O157:H7 str. EC4401]
gi|168762133|ref|ZP_02787140.1| ribosome-binding factor A [Escherichia coli O157:H7 str. EC4501]
gi|168769585|ref|ZP_02794592.1| ribosome-binding factor A [Escherichia coli O157:H7 str. EC4486]
gi|168773166|ref|ZP_02798173.1| ribosome-binding factor A [Escherichia coli O157:H7 str. EC4196]
gi|168781310|ref|ZP_02806317.1| ribosome-binding factor A [Escherichia coli O157:H7 str. EC4076]
gi|168786052|ref|ZP_02811059.1| ribosome-binding factor A [Escherichia coli O157:H7 str. EC869]
gi|168797768|ref|ZP_02822775.1| ribosome-binding factor A [Escherichia coli O157:H7 str. EC508]
gi|170018581|ref|YP_001723535.1| ribosome-binding factor A [Escherichia coli ATCC 8739]
gi|170082704|ref|YP_001732024.1| 30s ribosome binding factor [Escherichia coli str. K-12 substr.
DH10B]
gi|170680547|ref|YP_001745441.1| ribosome-binding factor A [Escherichia coli SMS-3-5]
gi|187731087|ref|YP_001881916.1| ribosome-binding factor A [Shigella boydii CDC 3083-94]
gi|188492975|ref|ZP_03000245.1| ribosome-binding factor A [Escherichia coli 53638]
gi|191168041|ref|ZP_03029841.1| ribosome-binding factor A [Escherichia coli B7A]
gi|191172235|ref|ZP_03033778.1| ribosome-binding factor A [Escherichia coli F11]
gi|193062103|ref|ZP_03043199.1| ribosome-binding factor A [Escherichia coli E22]
gi|193067230|ref|ZP_03048198.1| ribosome-binding factor A [Escherichia coli E110019]
gi|194427732|ref|ZP_03060279.1| ribosome-binding factor A [Escherichia coli B171]
gi|194433785|ref|ZP_03066060.1| ribosome-binding factor A [Shigella dysenteriae 1012]
gi|194438794|ref|ZP_03070880.1| ribosome-binding factor A [Escherichia coli 101-1]
gi|195938387|ref|ZP_03083769.1| ribosome-binding factor A [Escherichia coli O157:H7 str. EC4024]
gi|208807175|ref|ZP_03249512.1| ribosome-binding factor A [Escherichia coli O157:H7 str. EC4206]
gi|208814431|ref|ZP_03255760.1| ribosome-binding factor A [Escherichia coli O157:H7 str. EC4045]
gi|208819440|ref|ZP_03259760.1| ribosome-binding factor A [Escherichia coli O157:H7 str. EC4042]
gi|209397218|ref|YP_002272638.1| ribosome-binding factor A [Escherichia coli O157:H7 str. EC4115]
gi|209920644|ref|YP_002294728.1| ribosome-binding factor A [Escherichia coli SE11]
gi|217327738|ref|ZP_03443821.1| ribosome-binding factor A [Escherichia coli O157:H7 str. TW14588]
gi|218550452|ref|YP_002384243.1| ribosome-binding factor A [Escherichia fergusonii ATCC 35469]
gi|218555739|ref|YP_002388652.1| ribosome-binding factor A [Escherichia coli IAI1]
gi|218560239|ref|YP_002393152.1| ribosome-binding factor A [Escherichia coli S88]
gi|218691459|ref|YP_002399671.1| ribosome-binding factor A [Escherichia coli ED1a]
gi|218696874|ref|YP_002404541.1| ribosome-binding factor A [Escherichia coli 55989]
gi|218701938|ref|YP_002409567.1| ribosome-binding factor A [Escherichia coli IAI39]
gi|218706789|ref|YP_002414308.1| ribosome-binding factor A [Escherichia coli UMN026]
gi|227887890|ref|ZP_04005695.1| ribosome binding factor A [Escherichia coli 83972]
gi|238902271|ref|YP_002928067.1| 30s ribosome binding factor [Escherichia coli BW2952]
gi|253771997|ref|YP_003034828.1| ribosome-binding factor A [Escherichia coli 'BL21-Gold(DE3)pLysS
AG']
gi|254163111|ref|YP_003046219.1| ribosome-binding factor A [Escherichia coli B str. REL606]
gi|254795118|ref|YP_003079955.1| ribosome-binding factor A [Escherichia coli O157:H7 str. TW14359]
gi|256018913|ref|ZP_05432778.1| ribosome-binding factor A [Shigella sp. D9]
gi|256024257|ref|ZP_05438122.1| ribosome-binding factor A [Escherichia sp. 4_1_40B]
gi|260845982|ref|YP_003223760.1| 30S ribosome binding factor RbfA [Escherichia coli O103:H2 str.
12009]
gi|260857296|ref|YP_003231187.1| 30S ribosome binding factor RbfA [Escherichia coli O26:H11 str.
11368]
gi|260869919|ref|YP_003236321.1| 30S ribosome binding factor RbfA [Escherichia coli O111:H- str.
11128]
gi|261228179|ref|ZP_05942460.1| 30s ribosome binding factor [Escherichia coli O157:H7 str.
FRIK2000]
gi|261255035|ref|ZP_05947568.1| 30S ribosome binding factor RbfA [Escherichia coli O157:H7 str.
FRIK966]
gi|291284543|ref|YP_003501361.1| Ribosome-binding factor A [Escherichia coli O55:H7 str. CB9615]
gi|293406779|ref|ZP_06650705.1| ribosome-binding factor A [Escherichia coli FVEC1412]
gi|293449503|ref|ZP_06663924.1| ribosome-binding factor A [Escherichia coli B088]
gi|298382519|ref|ZP_06992116.1| ribosome-binding factor A [Escherichia coli FVEC1302]
gi|300817581|ref|ZP_07097797.1| ribosome-binding factor A [Escherichia coli MS 107-1]
gi|300823870|ref|ZP_07103994.1| ribosome-binding factor A [Escherichia coli MS 119-7]
gi|300904353|ref|ZP_07122206.1| ribosome-binding factor A [Escherichia coli MS 84-1]
gi|300918922|ref|ZP_07135481.1| ribosome-binding factor A [Escherichia coli MS 115-1]
gi|300926094|ref|ZP_07141912.1| ribosome-binding factor A [Escherichia coli MS 182-1]
gi|300929857|ref|ZP_07145303.1| ribosome-binding factor A [Escherichia coli MS 187-1]
gi|300938077|ref|ZP_07152855.1| ribosome-binding factor A [Escherichia coli MS 21-1]
gi|300948817|ref|ZP_07162885.1| ribosome-binding factor A [Escherichia coli MS 116-1]
gi|300955753|ref|ZP_07168098.1| ribosome-binding factor A [Escherichia coli MS 175-1]
gi|300977834|ref|ZP_07174074.1| ribosome-binding factor A [Escherichia coli MS 200-1]
gi|300990767|ref|ZP_07179339.1| ribosome-binding factor A [Escherichia coli MS 45-1]
gi|301025988|ref|ZP_07189470.1| ribosome-binding factor A [Escherichia coli MS 196-1]
gi|301047990|ref|ZP_07195032.1| ribosome-binding factor A [Escherichia coli MS 185-1]
gi|301301777|ref|ZP_07207911.1| ribosome-binding factor A [Escherichia coli MS 124-1]
gi|301326410|ref|ZP_07219764.1| ribosome-binding factor A [Escherichia coli MS 78-1]
gi|301644878|ref|ZP_07244850.1| ribosome-binding factor A [Escherichia coli MS 146-1]
gi|306816489|ref|ZP_07450621.1| ribosome-binding factor A [Escherichia coli NC101]
gi|307139854|ref|ZP_07499210.1| ribosome-binding factor A [Escherichia coli H736]
gi|307313126|ref|ZP_07592752.1| ribosome-binding factor A [Escherichia coli W]
gi|309785494|ref|ZP_07680125.1| ribosome-binding factor A [Shigella dysenteriae 1617]
gi|309793745|ref|ZP_07688171.1| ribosome-binding factor A [Escherichia coli MS 145-7]
gi|312972561|ref|ZP_07786734.1| ribosome-binding factor A [Escherichia coli 1827-70]
gi|331643867|ref|ZP_08344998.1| ribosome-binding factor A [Escherichia coli H736]
gi|331654773|ref|ZP_08355773.1| ribosome-binding factor A [Escherichia coli M718]
gi|331659456|ref|ZP_08360398.1| ribosome-binding factor A [Escherichia coli TA206]
gi|331664781|ref|ZP_08365686.1| ribosome-binding factor A [Escherichia coli TA143]
gi|331669996|ref|ZP_08370841.1| ribosome-binding factor A [Escherichia coli TA271]
gi|331674705|ref|ZP_08375464.1| ribosome-binding factor A [Escherichia coli TA280]
gi|331679248|ref|ZP_08379920.1| ribosome-binding factor A [Escherichia coli H591]
gi|331684816|ref|ZP_08385408.1| ribosome-binding factor A [Escherichia coli H299]
gi|67471971|sp|P0A7G2|RBFA_ECOLI RecName: Full=Ribosome-binding factor A; AltName: Full=Protein P15B
gi|67471972|sp|P0A7G3|RBFA_ECOL6 RecName: Full=Ribosome-binding factor A
gi|67471973|sp|P0A7G4|RBFA_ECO57 RecName: Full=Ribosome-binding factor A
gi|67471974|sp|P0A7G5|RBFA_SHIFL RecName: Full=Ribosome-binding factor A
gi|123147649|sp|Q0TCU2|RBFA_ECOL5 RecName: Full=Ribosome-binding factor A
gi|123342479|sp|Q0T0B4|RBFA_SHIF8 RecName: Full=Ribosome-binding factor A
gi|123558564|sp|Q31W46|RBFA_SHIBS RecName: Full=Ribosome-binding factor A
gi|123561526|sp|Q32BG6|RBFA_SHIDS RecName: Full=Ribosome-binding factor A
gi|123616074|sp|Q3YX74|RBFA_SHISS RecName: Full=Ribosome-binding factor A
gi|166218437|sp|A1AG72|RBFA_ECOK1 RecName: Full=Ribosome-binding factor A
gi|166918674|sp|A7ZS64|RBFA_ECO24 RecName: Full=Ribosome-binding factor A
gi|166918675|sp|A8A4Y3|RBFA_ECOHS RecName: Full=Ribosome-binding factor A
gi|172046242|sp|Q1R6H1|RBFA_ECOUT RecName: Full=Ribosome-binding factor A
gi|189039540|sp|B1IQV4|RBFA_ECOLC RecName: Full=Ribosome-binding factor A
gi|226723599|sp|B1XGX9|RBFA_ECODH RecName: Full=Ribosome-binding factor A
gi|226723600|sp|B6I1P2|RBFA_ECOSE RecName: Full=Ribosome-binding factor A
gi|226736644|sp|B7MB88|RBFA_ECO45 RecName: Full=Ribosome-binding factor A
gi|226736645|sp|B7NKN6|RBFA_ECO7I RecName: Full=Ribosome-binding factor A
gi|226736646|sp|B7M075|RBFA_ECO8A RecName: Full=Ribosome-binding factor A
gi|226736647|sp|B7NDF3|RBFA_ECOLU RecName: Full=Ribosome-binding factor A
gi|226736648|sp|B1LFR9|RBFA_ECOSM RecName: Full=Ribosome-binding factor A
gi|226736649|sp|B7LR36|RBFA_ESCF3 RecName: Full=Ribosome-binding factor A
gi|238058487|sp|B5YS57|RBFA_ECO5E RecName: Full=Ribosome-binding factor A
gi|238691777|sp|B2U208|RBFA_SHIB3 RecName: Full=Ribosome-binding factor A
gi|254789749|sp|B7LHN2|RBFA_ECO55 RecName: Full=Ribosome-binding factor A
gi|254789750|sp|B7N0V2|RBFA_ECO81 RecName: Full=Ribosome-binding factor A
gi|259551972|sp|C4ZSQ8|RBFA_ECOBW RecName: Full=Ribosome-binding factor A
gi|12517778|gb|AAG58303.1|AE005545_5 ribosome-binding factor A [Escherichia coli O157:H7 str. EDL933]
gi|42218|emb|CAA32020.1| P15B gene product (AA 1 - 133) [Escherichia coli]
gi|42222|emb|CAA31634.1| unnamed protein product [Escherichia coli]
gi|606107|gb|AAA57970.1| P15B [Escherichia coli str. K-12 substr. MG1655]
gi|1789558|gb|AAC76201.1| 30s ribosome binding factor [Escherichia coli str. K-12 substr.
MG1655]
gi|13363521|dbj|BAB37471.1| ribosome-binding factor A [Escherichia coli O157:H7 str. Sakai]
gi|30042766|gb|AAP18489.1| ribosome-binding factor A [Shigella flexneri 2a str. 2457T]
gi|56383830|gb|AAN44675.2| ribosome-binding factor A [Shigella flexneri 2a str. 301]
gi|73857181|gb|AAZ89888.1| ribosome-binding factor A [Shigella sonnei Ss046]
gi|81242629|gb|ABB63339.1| ribosome-binding factor A [Shigella dysenteriae Sd197]
gi|81247004|gb|ABB67712.1| ribosome-binding factor A [Shigella boydii Sb227]
gi|85675963|dbj|BAE77213.1| 30s ribosome binding factor [Escherichia coli str. K12 substr.
W3110]
gi|110345000|gb|ABG71237.1| ribosome-binding factor A [Escherichia coli 536]
gi|110616584|gb|ABF05251.1| ribosome-binding factor A [Shigella flexneri 5 str. 8401]
gi|115514587|gb|ABJ02662.1| ribosome-binding factor A [Escherichia coli APEC O1]
gi|157068332|gb|ABV07587.1| ribosome-binding factor A [Escherichia coli HS]
gi|157076979|gb|ABV16687.1| ribosome-binding factor A [Escherichia coli E24377A]
gi|169753509|gb|ACA76208.1| ribosome-binding factor A [Escherichia coli ATCC 8739]
gi|169890539|gb|ACB04246.1| 30s ribosome binding factor [Escherichia coli str. K-12 substr.
DH10B]
gi|170518265|gb|ACB16443.1| ribosome-binding factor A [Escherichia coli SMS-3-5]
gi|187428079|gb|ACD07353.1| ribosome-binding factor A [Shigella boydii CDC 3083-94]
gi|187770833|gb|EDU34677.1| ribosome-binding factor A [Escherichia coli O157:H7 str. EC4196]
gi|188016404|gb|EDU54526.1| ribosome-binding factor A [Escherichia coli O157:H7 str. EC4113]
gi|188488174|gb|EDU63277.1| ribosome-binding factor A [Escherichia coli 53638]
gi|189001131|gb|EDU70117.1| ribosome-binding factor A [Escherichia coli O157:H7 str. EC4076]
gi|189358437|gb|EDU76856.1| ribosome-binding factor A [Escherichia coli O157:H7 str. EC4401]
gi|189361487|gb|EDU79906.1| ribosome-binding factor A [Escherichia coli O157:H7 str. EC4486]
gi|189367587|gb|EDU86003.1| ribosome-binding factor A [Escherichia coli O157:H7 str. EC4501]
gi|189373921|gb|EDU92337.1| ribosome-binding factor A [Escherichia coli O157:H7 str. EC869]
gi|189379719|gb|EDU98135.1| ribosome-binding factor A [Escherichia coli O157:H7 str. EC508]
gi|190901910|gb|EDV61659.1| ribosome-binding factor A [Escherichia coli B7A]
gi|190907545|gb|EDV67141.1| ribosome-binding factor A [Escherichia coli F11]
gi|192932323|gb|EDV84921.1| ribosome-binding factor A [Escherichia coli E22]
gi|192959187|gb|EDV89622.1| ribosome-binding factor A [Escherichia coli E110019]
gi|194414240|gb|EDX30515.1| ribosome-binding factor A [Escherichia coli B171]
gi|194418048|gb|EDX34142.1| ribosome-binding factor A [Shigella dysenteriae 1012]
gi|194422266|gb|EDX38267.1| ribosome-binding factor A [Escherichia coli 101-1]
gi|208726976|gb|EDZ76577.1| ribosome-binding factor A [Escherichia coli O157:H7 str. EC4206]
gi|208735708|gb|EDZ84395.1| ribosome-binding factor A [Escherichia coli O157:H7 str. EC4045]
gi|208739563|gb|EDZ87245.1| ribosome-binding factor A [Escherichia coli O157:H7 str. EC4042]
gi|209158618|gb|ACI36051.1| ribosome-binding factor A [Escherichia coli O157:H7 str. EC4115]
gi|209758348|gb|ACI77486.1| ribosome-binding factor A [Escherichia coli]
gi|209758350|gb|ACI77487.1| ribosome-binding factor A [Escherichia coli]
gi|209758352|gb|ACI77488.1| ribosome-binding factor A [Escherichia coli]
gi|209758354|gb|ACI77489.1| ribosome-binding factor A [Escherichia coli]
gi|209758356|gb|ACI77490.1| ribosome-binding factor A [Escherichia coli]
gi|209913903|dbj|BAG78977.1| ribosome-binding factor A [Escherichia coli SE11]
gi|217320105|gb|EEC28530.1| ribosome-binding factor A [Escherichia coli O157:H7 str. TW14588]
gi|218353606|emb|CAU99796.1| 30s ribosome binding factor [Escherichia coli 55989]
gi|218357993|emb|CAQ90639.1| 30s ribosome binding factor [Escherichia fergusonii ATCC 35469]
gi|218362507|emb|CAR00131.1| 30s ribosome binding factor [Escherichia coli IAI1]
gi|218367008|emb|CAR04779.1| 30s ribosome binding factor [Escherichia coli S88]
gi|218371924|emb|CAR19780.1| 30s ribosome binding factor [Escherichia coli IAI39]
gi|218429023|emb|CAR09970.2| 30s ribosome binding factor [Escherichia coli ED1a]
gi|218433886|emb|CAR14803.1| 30s ribosome binding factor [Escherichia coli UMN026]
gi|222034886|emb|CAP77629.1| ribosome-binding factor A [Escherichia coli LF82]
gi|227835286|gb|EEJ45752.1| ribosome binding factor A [Escherichia coli 83972]
gi|238859805|gb|ACR61803.1| 30s ribosome binding factor [Escherichia coli BW2952]
gi|242378712|emb|CAQ33502.1| 30S ribosome binding factor [Escherichia coli BL21(DE3)]
gi|253323041|gb|ACT27643.1| ribosome-binding factor A [Escherichia coli 'BL21-Gold(DE3)pLysS
AG']
gi|253975012|gb|ACT40683.1| ribosome-binding factor A [Escherichia coli B str. REL606]
gi|253979168|gb|ACT44838.1| ribosome-binding factor A [Escherichia coli BL21(DE3)]
gi|254594518|gb|ACT73879.1| 30s ribosome binding factor [Escherichia coli O157:H7 str. TW14359]
gi|257755945|dbj|BAI27447.1| 30S ribosome binding factor RbfA [Escherichia coli O26:H11 str.
11368]
gi|257761129|dbj|BAI32626.1| 30S ribosome binding factor RbfA [Escherichia coli O103:H2 str.
12009]
gi|257766275|dbj|BAI37770.1| 30S ribosome binding factor RbfA [Escherichia coli O111:H- str.
11128]
gi|260447804|gb|ACX38226.1| ribosome-binding factor A [Escherichia coli DH1]
gi|281180211|dbj|BAI56541.1| ribosome-binding factor A [Escherichia coli SE15]
gi|281602551|gb|ADA75535.1| Ribosome-binding factor A [Shigella flexneri 2002017]
gi|290764416|gb|ADD58377.1| Ribosome-binding factor A [Escherichia coli O55:H7 str. CB9615]
gi|291322593|gb|EFE62022.1| ribosome-binding factor A [Escherichia coli B088]
gi|291426785|gb|EFE99817.1| ribosome-binding factor A [Escherichia coli FVEC1412]
gi|294493732|gb|ADE92488.1| ribosome-binding factor A [Escherichia coli IHE3034]
gi|298277659|gb|EFI19175.1| ribosome-binding factor A [Escherichia coli FVEC1302]
gi|299879883|gb|EFI88094.1| ribosome-binding factor A [Escherichia coli MS 196-1]
gi|300300133|gb|EFJ56518.1| ribosome-binding factor A [Escherichia coli MS 185-1]
gi|300308211|gb|EFJ62731.1| ribosome-binding factor A [Escherichia coli MS 200-1]
gi|300317386|gb|EFJ67170.1| ribosome-binding factor A [Escherichia coli MS 175-1]
gi|300403704|gb|EFJ87242.1| ribosome-binding factor A [Escherichia coli MS 84-1]
gi|300407075|gb|EFJ90613.1| ribosome-binding factor A [Escherichia coli MS 45-1]
gi|300413948|gb|EFJ97258.1| ribosome-binding factor A [Escherichia coli MS 115-1]
gi|300417859|gb|EFK01170.1| ribosome-binding factor A [Escherichia coli MS 182-1]
gi|300451706|gb|EFK15326.1| ribosome-binding factor A [Escherichia coli MS 116-1]
gi|300456937|gb|EFK20430.1| ribosome-binding factor A [Escherichia coli MS 21-1]
gi|300462219|gb|EFK25712.1| ribosome-binding factor A [Escherichia coli MS 187-1]
gi|300523638|gb|EFK44707.1| ribosome-binding factor A [Escherichia coli MS 119-7]
gi|300529879|gb|EFK50941.1| ribosome-binding factor A [Escherichia coli MS 107-1]
gi|300842758|gb|EFK70518.1| ribosome-binding factor A [Escherichia coli MS 124-1]
gi|300846899|gb|EFK74659.1| ribosome-binding factor A [Escherichia coli MS 78-1]
gi|301076823|gb|EFK91629.1| ribosome-binding factor A [Escherichia coli MS 146-1]
gi|305850054|gb|EFM50513.1| ribosome-binding factor A [Escherichia coli NC101]
gi|306907037|gb|EFN37545.1| ribosome-binding factor A [Escherichia coli W]
gi|307555263|gb|ADN48038.1| ribosome-binding factor A [Escherichia coli ABU 83972]
gi|307625232|gb|ADN69536.1| ribosome-binding factor A [Escherichia coli UM146]
gi|308122702|gb|EFO59964.1| ribosome-binding factor A [Escherichia coli MS 145-7]
gi|308926614|gb|EFP72090.1| ribosome-binding factor A [Shigella dysenteriae 1617]
gi|309703595|emb|CBJ02935.1| ribosome-binding factor A [Escherichia coli ETEC H10407]
gi|310332503|gb|EFP99716.1| ribosome-binding factor A [Escherichia coli 1827-70]
gi|312947726|gb|ADR28553.1| ribosome-binding factor A [Escherichia coli O83:H1 str. NRG 857C]
gi|313648591|gb|EFS13033.1| ribosome-binding factor A [Shigella flexneri 2a str. 2457T]
gi|315062475|gb|ADT76802.1| 30S ribosome binding factor [Escherichia coli W]
gi|315137755|dbj|BAJ44914.1| ribosome-binding factor A [Escherichia coli DH1]
gi|315257093|gb|EFU37061.1| ribosome-binding factor A [Escherichia coli MS 85-1]
gi|315288931|gb|EFU48329.1| ribosome-binding factor A [Escherichia coli MS 110-3]
gi|315294912|gb|EFU54251.1| ribosome-binding factor A [Escherichia coli MS 153-1]
gi|315297881|gb|EFU57151.1| ribosome-binding factor A [Escherichia coli MS 16-3]
gi|315617250|gb|EFU97859.1| ribosome-binding factor A [Escherichia coli 3431]
gi|320175531|gb|EFW50627.1| Ribosome-binding factor A [Shigella dysenteriae CDC 74-1112]
gi|320181443|gb|EFW56361.1| Ribosome-binding factor A [Shigella boydii ATCC 9905]
gi|320186656|gb|EFW61380.1| Ribosome-binding factor A [Shigella flexneri CDC 796-83]
gi|320189521|gb|EFW64180.1| Ribosome-binding factor A [Escherichia coli O157:H7 str. EC1212]
gi|320194653|gb|EFW69283.1| Ribosome-binding factor A [Escherichia coli WV_060327]
gi|320202081|gb|EFW76656.1| Ribosome-binding factor A [Escherichia coli EC4100B]
gi|320640239|gb|EFX09811.1| ribosome-binding factor A [Escherichia coli O157:H7 str. G5101]
gi|320645536|gb|EFX14545.1| ribosome-binding factor A [Escherichia coli O157:H- str. 493-89]
gi|320650846|gb|EFX19303.1| ribosome-binding factor A [Escherichia coli O157:H- str. H 2687]
gi|320656227|gb|EFX24139.1| ribosome-binding factor A [Escherichia coli O55:H7 str. 3256-97 TW
07815]
gi|320661917|gb|EFX29325.1| ribosome-binding factor A [Escherichia coli O55:H7 str. USDA 5905]
gi|320666752|gb|EFX33731.1| ribosome-binding factor A [Escherichia coli O157:H7 str. LSU-61]
gi|323154381|gb|EFZ40582.1| ribosome-binding factor A [Escherichia coli EPECa14]
gi|323162861|gb|EFZ48696.1| ribosome-binding factor A [Escherichia coli E128010]
gi|323165125|gb|EFZ50915.1| ribosome-binding factor A [Shigella sonnei 53G]
gi|323173573|gb|EFZ59202.1| ribosome-binding factor A [Escherichia coli LT-68]
gi|323178880|gb|EFZ64456.1| ribosome-binding factor A [Escherichia coli 1180]
gi|323183122|gb|EFZ68520.1| ribosome-binding factor A [Escherichia coli 1357]
gi|323189210|gb|EFZ74494.1| ribosome-binding factor A [Escherichia coli RN587/1]
gi|323376937|gb|ADX49205.1| ribosome-binding factor A [Escherichia coli KO11]
gi|323936137|gb|EGB32431.1| ribosome-binding protein A [Escherichia coli E1520]
gi|323941731|gb|EGB37910.1| ribosome-binding proteinA [Escherichia coli E482]
gi|323946977|gb|EGB42993.1| ribosome-binding protein A [Escherichia coli H120]
gi|323951313|gb|EGB47188.1| ribosome-binding proteinA [Escherichia coli H252]
gi|323957684|gb|EGB53398.1| ribosome-binding proteinA [Escherichia coli H263]
gi|323961061|gb|EGB56676.1| ribosome-binding proteinA [Escherichia coli H489]
gi|323966349|gb|EGB61783.1| ribosome-binding proteinA [Escherichia coli M863]
gi|323970268|gb|EGB65539.1| ribosome-binding proteinA [Escherichia coli TA007]
gi|323979114|gb|EGB74192.1| ribosome-binding proteinA [Escherichia coli TW10509]
gi|324008766|gb|EGB77985.1| ribosome-binding factor A [Escherichia coli MS 57-2]
gi|324012107|gb|EGB81326.1| ribosome-binding factor A [Escherichia coli MS 60-1]
gi|324018309|gb|EGB87528.1| ribosome-binding factor A [Escherichia coli MS 117-3]
gi|324115227|gb|EGC09191.1| ribosome-binding proteinA [Escherichia fergusonii B253]
gi|325498750|gb|EGC96609.1| ribosome-binding factor A [Escherichia fergusonii ECD227]
gi|326337869|gb|EGD61703.1| Ribosome-binding factor A [Escherichia coli O157:H7 str. 1125]
gi|326347438|gb|EGD71163.1| Ribosome-binding factor A [Escherichia coli O157:H7 str. 1044]
gi|327251948|gb|EGE63634.1| ribosome-binding factor A [Escherichia coli STEC_7v]
gi|331037338|gb|EGI09562.1| ribosome-binding factor A [Escherichia coli H736]
gi|331048155|gb|EGI20232.1| ribosome-binding factor A [Escherichia coli M718]
gi|331054038|gb|EGI26067.1| ribosome-binding factor A [Escherichia coli TA206]
gi|331058029|gb|EGI30011.1| ribosome-binding factor A [Escherichia coli TA143]
gi|331062909|gb|EGI34823.1| ribosome-binding factor A [Escherichia coli TA271]
gi|331068144|gb|EGI39540.1| ribosome-binding factor A [Escherichia coli TA280]
gi|331073313|gb|EGI44636.1| ribosome-binding factor A [Escherichia coli H591]
gi|331078431|gb|EGI49637.1| ribosome-binding factor A [Escherichia coli H299]
gi|332086101|gb|EGI91263.1| ribosome-binding factor A [Shigella boydii 5216-82]
gi|332086394|gb|EGI91541.1| ribosome-binding factor A [Shigella dysenteriae 155-74]
gi|332090730|gb|EGI95824.1| ribosome-binding factor A [Shigella boydii 3594-74]
gi|332345124|gb|AEE58458.1| ribosome-binding factor RbfA [Escherichia coli UMNK88]
gi|332752327|gb|EGJ82717.1| ribosome-binding factor A [Shigella flexneri 4343-70]
gi|332752854|gb|EGJ83239.1| ribosome-binding factor A [Shigella flexneri K-671]
gi|332754590|gb|EGJ84956.1| ribosome-binding factor A [Shigella flexneri 2747-71]
gi|332765164|gb|EGJ95391.1| ribosome-binding factor A [Shigella flexneri 2930-71]
gi|332998809|gb|EGK18405.1| ribosome-binding factor A [Shigella flexneri VA-6]
gi|333000039|gb|EGK19622.1| ribosome-binding factor A [Shigella flexneri K-218]
gi|333014561|gb|EGK33908.1| ribosome-binding factor A [Shigella flexneri K-304]
Length = 133
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 42/126 (33%), Positives = 64/126 (50%), Gaps = 7/126 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K R RV +E++ + +IL E +D + + ++S V MS DL A VY++ D
Sbjct: 2 AKEFGRPQRVAQEMQKEIA-LILQREIKDPRLG-MMTTVSGVEMSRDLAYAKVYVTFLND 59
Query: 66 VSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
D V I AL FIR +G+++R LR VPEL F YD SL +++ L+ +
Sbjct: 60 KDEDAVKAGIKALQEASGFIRSLLGKAMR-LRIVPELTFFYDNSLVEGMRMSNLVTS-VV 117
Query: 123 PVALEK 128
E+
Sbjct: 118 KHDEER 123
>gi|157148736|ref|YP_001456055.1| ribosome-binding factor A [Citrobacter koseri ATCC BAA-895]
gi|166218429|sp|A8AQ56|RBFA_CITK8 RecName: Full=Ribosome-binding factor A
gi|157085941|gb|ABV15619.1| hypothetical protein CKO_04566 [Citrobacter koseri ATCC BAA-895]
Length = 133
Score = 140 bits (353), Expect = 8e-32, Method: Composition-based stats.
Identities = 42/126 (33%), Positives = 64/126 (50%), Gaps = 7/126 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K R RV +E++ + +IL E +D + + ++S V MS DL A VY++ D
Sbjct: 2 AKEFGRPQRVAQEMQKEIA-IILQREIKDPRLG-MMTTVSGVEMSRDLAYAKVYVTFLND 59
Query: 66 VSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
D V I AL FIR +G+++R LR VPEL F YD SL +++ L+ +
Sbjct: 60 KDEDAVKAGIKALQEASGFIRTLLGKAMR-LRIVPELTFFYDNSLVEGMRMSNLVTN-VV 117
Query: 123 PVALEK 128
E+
Sbjct: 118 KHDEER 123
>gi|168237986|ref|ZP_02663044.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. SL480]
gi|194737644|ref|YP_002116234.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. CVM19633]
gi|238693707|sp|B4TWD6|RBFA_SALSV RecName: Full=Ribosome-binding factor A
gi|194713146|gb|ACF92367.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. CVM19633]
gi|197289067|gb|EDY28436.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. SL480]
Length = 133
Score = 140 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 41/126 (32%), Positives = 64/126 (50%), Gaps = 7/126 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K R RV +E++ + +IL E +D + + ++S V MS DL A V+++ D
Sbjct: 2 AKEFGRPQRVAQEMQKEIA-IILQREIKDPRLG-MMTTVSGVEMSRDLAYAKVFVTFLND 59
Query: 66 VSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
D V I AL FIR +G+++R LR VPEL F YD SL +++ L+ +
Sbjct: 60 KDEDAVKAGIKALQEASGFIRSLLGKAMR-LRIVPELTFFYDNSLVEGMRMSNLVTN-VV 117
Query: 123 PVALEK 128
E+
Sbjct: 118 KHDEER 123
>gi|317493627|ref|ZP_07952048.1| ribosome-binding protein A [Enterobacteriaceae bacterium 9_2_54FAA]
gi|316918570|gb|EFV39908.1| ribosome-binding protein A [Enterobacteriaceae bacterium 9_2_54FAA]
Length = 136
Score = 139 bits (352), Expect = 9e-32, Method: Composition-based stats.
Identities = 41/126 (32%), Positives = 67/126 (53%), Gaps = 8/126 (6%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K R RV +E++ + +IL E +D I ++++S V +S DL A V+++ D
Sbjct: 2 AKEFSRTQRVSQEMQKEIA-IILQREVKDPRIG--MVTVSGVEVSRDLAYAKVFVTFLND 58
Query: 66 VSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
P+ V + AL+ FIR IG+++R LR VPEL F YD SL +++ L+ +
Sbjct: 59 SDPNAVRVGLKALHEASGFIRMLIGKAMR-LRVVPELTFSYDNSLVEGMRMSNLVTS-VV 116
Query: 123 PVALEK 128
E+
Sbjct: 117 KNDEER 122
>gi|156935693|ref|YP_001439609.1| ribosome-binding factor A [Cronobacter sakazakii ATCC BAA-894]
gi|156533947|gb|ABU78773.1| hypothetical protein ESA_03560 [Cronobacter sakazakii ATCC BAA-894]
Length = 150
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 39/126 (30%), Positives = 63/126 (50%), Gaps = 7/126 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K R RV +E++ + +IL E +D + + ++S V +S DL A V+++ D
Sbjct: 19 AKEFGRPQRVAQEMQKEIA-IILQREIKDPRVG-LMTTVSGVEVSRDLAYAKVFVTFLND 76
Query: 66 VSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
V I AL FIR +G+++R LR VPEL F YD SL +++ L+ +
Sbjct: 77 KDEAAVKAGIKALQDASGFIRSLLGKAMR-LRIVPELTFFYDNSLVEGMRMSNLVTS-VV 134
Query: 123 PVALEK 128
E+
Sbjct: 135 KHDEER 140
>gi|331648968|ref|ZP_08350056.1| ribosome-binding factor A [Escherichia coli M605]
gi|331042715|gb|EGI14857.1| ribosome-binding factor A [Escherichia coli M605]
Length = 133
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 42/126 (33%), Positives = 64/126 (50%), Gaps = 7/126 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K R RV +E++ + +IL E +D + + ++S V MS DL A VY++ D
Sbjct: 2 AKEFDRPQRVAQEMQKEIA-LILQREIKDPRLG-MMTTVSGVEMSRDLAYAKVYVTFLND 59
Query: 66 VSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
D V I AL FIR +G+++R LR VPEL F YD SL +++ L+ +
Sbjct: 60 KDEDAVKAGIKALQEASGFIRSLLGKAMR-LRIVPELTFFYDNSLVEGMRMSNLVTS-VV 117
Query: 123 PVALEK 128
E+
Sbjct: 118 KHDEER 123
>gi|16766583|ref|NP_462198.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|167990150|ref|ZP_02571250.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar 4,[5],12:i:- str. CVM23701]
gi|168231894|ref|ZP_02656952.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Kentucky str. CDC 191]
gi|194470716|ref|ZP_03076700.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Kentucky str. CVM29188]
gi|198243121|ref|YP_002217258.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Dublin str. CT_02021853]
gi|200387117|ref|ZP_03213729.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Virchow str. SL491]
gi|205354189|ref|YP_002227990.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|207858535|ref|YP_002245186.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|20978604|sp|Q8ZLT1|RBFA_SALTY RecName: Full=Ribosome-binding factor A
gi|226723608|sp|B5FI12|RBFA_SALDC RecName: Full=Ribosome-binding factor A
gi|226723609|sp|B5QZV7|RBFA_SALEP RecName: Full=Ribosome-binding factor A
gi|226723610|sp|B5REN5|RBFA_SALG2 RecName: Full=Ribosome-binding factor A
gi|16421844|gb|AAL22157.1| ribosome-binding factor [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|194457080|gb|EDX45919.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Kentucky str. CVM29188]
gi|197937637|gb|ACH74970.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Dublin str. CT_02021853]
gi|199604215|gb|EDZ02760.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Virchow str. SL491]
gi|205273970|emb|CAR38975.1| ribosome-binding factor A (P15B protein) [Salmonella enterica
subsp. enterica serovar Gallinarum str. 287/91]
gi|205331145|gb|EDZ17909.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar 4,[5],12:i:- str. CVM23701]
gi|205333937|gb|EDZ20701.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Kentucky str. CDC 191]
gi|206710338|emb|CAR34696.1| ribosome-binding factor A (P15B protein) [Salmonella enterica
subsp. enterica serovar Enteritidis str. P125109]
gi|261248451|emb|CBG26288.1| ribosome-binding factor A (P15B protein) [Salmonella enterica
subsp. enterica serovar Typhimurium str. D23580]
gi|267995482|gb|ACY90367.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Typhimurium str. 14028S]
gi|301159835|emb|CBW19354.1| ribosome-binding factor A (P15B protein) [Salmonella enterica
subsp. enterica serovar Typhimurium str. SL1344]
gi|312914311|dbj|BAJ38285.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Typhimurium str. T000240]
gi|321225969|gb|EFX51023.1| Ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Typhimurium str. TN061786]
gi|322615290|gb|EFY12211.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Montevideo str. 315996572]
gi|322618351|gb|EFY15242.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-1]
gi|322622844|gb|EFY19688.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-3]
gi|322626834|gb|EFY23631.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-4]
gi|322631403|gb|EFY28163.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-1]
gi|322635330|gb|EFY32044.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-2]
gi|322643465|gb|EFY40028.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Montevideo str. 531954]
gi|322647099|gb|EFY43600.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Montevideo str. NC_MB110209-0054]
gi|322648902|gb|EFY45347.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Montevideo str. OH_2009072675]
gi|322655094|gb|EFY51405.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Montevideo str. CASC_09SCPH15965]
gi|322657697|gb|EFY53965.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Montevideo str. 19N]
gi|322664193|gb|EFY60391.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Montevideo str. 81038-01]
gi|322667476|gb|EFY63638.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Montevideo str. MD_MDA09249507]
gi|322674724|gb|EFY70816.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Montevideo str. 414877]
gi|322675643|gb|EFY71716.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Montevideo str. 366867]
gi|322682279|gb|EFY78302.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Montevideo str. 413180]
gi|322684882|gb|EFY80880.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Montevideo str. 446600]
gi|323131645|gb|ADX19075.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Typhimurium str. 4/74]
gi|323191871|gb|EFZ77119.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Montevideo str. 609458-1]
gi|323199030|gb|EFZ84127.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Montevideo str. 556150-1]
gi|323204270|gb|EFZ89279.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Montevideo str. 609460]
gi|323207617|gb|EFZ92564.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Montevideo str. 507440-20]
gi|323211330|gb|EFZ96174.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Montevideo str. 556152]
gi|323214728|gb|EFZ99477.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Montevideo str. MB101509-0077]
gi|323221208|gb|EGA05634.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Montevideo str. MB102109-0047]
gi|323224051|gb|EGA08344.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Montevideo str. MB110209-0055]
gi|323230300|gb|EGA14419.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Montevideo str. MB111609-0052]
gi|323233276|gb|EGA17370.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009083312]
gi|323239313|gb|EGA23363.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009085258]
gi|323242436|gb|EGA26462.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Montevideo str. 315731156]
gi|323246946|gb|EGA30912.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2009159199]
gi|323254121|gb|EGA37941.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008282]
gi|323255238|gb|EGA39015.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008283]
gi|323262701|gb|EGA46257.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008284]
gi|323264011|gb|EGA47519.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008285]
gi|323269397|gb|EGA52852.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008287]
gi|326625036|gb|EGE31381.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Dublin str. 3246]
gi|326629310|gb|EGE35653.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Gallinarum str. 9]
gi|332990143|gb|AEF09126.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Typhimurium str. UK-1]
Length = 133
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 41/126 (32%), Positives = 64/126 (50%), Gaps = 7/126 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K R RV +E++ + +IL E +D + + ++S V MS DL A V+++ D
Sbjct: 2 AKEFGRPQRVAQEMQKEIA-IILQREIKDPRLG-MMTTVSGVEMSRDLAYAKVFVTFLND 59
Query: 66 VSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
D V I AL FIR +G+++R LR VPEL F YD SL +++ L+ +
Sbjct: 60 KDEDAVKAGIKALQEASGFIRSLLGKAMR-LRIVPELTFFYDNSLVEGMRMSNLVTN-VV 117
Query: 123 PVALEK 128
E+
Sbjct: 118 KHDEER 123
>gi|294675833|ref|YP_003576448.1| ribosome-binding factor A [Rhodobacter capsulatus SB 1003]
gi|294474653|gb|ADE84041.1| ribosome-binding factor A [Rhodobacter capsulatus SB 1003]
Length = 144
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 36/128 (28%), Positives = 65/128 (50%), Gaps = 5/128 (3%)
Query: 3 NKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS- 61
+ S+R LRVGE +R L V+L + D +++ I++ EV S DL+VATVY++
Sbjct: 7 SSGDGPSQRQLRVGELIRRTLSDVLLRGDVHDPDLNKISITVGEVRTSPDLKVATVYVAP 66
Query: 62 ---LPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
S + +++AL + +R + +++ L+Y P+LRFR D + + L
Sbjct: 67 LGGTLGGESAEAMLAALRRHSGELRHHVAKAM-TLKYAPDLRFRMDETFDRLDETRRLFS 125
Query: 119 LPKIPVAL 126
+ +
Sbjct: 126 DETVQRDI 133
>gi|146278956|ref|YP_001169115.1| ribosome-binding factor A [Rhodobacter sphaeroides ATCC 17025]
gi|145557197|gb|ABP71810.1| ribosome-binding factor A [Rhodobacter sphaeroides ATCC 17025]
Length = 165
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 37/123 (30%), Positives = 59/123 (47%), Gaps = 1/123 (0%)
Query: 4 KNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP 63
S+R LRVGE +R L V+ E D ++R I++ EV S DL+VATV++
Sbjct: 35 TGTGPSQRQLRVGELIRRTLADVLNRGEIHDPDLNRMSITVGEVRCSPDLKVATVHVMPL 94
Query: 64 LDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIP 123
+ I+ L+ + +R I R + L+Y P+LRFR D + + L +
Sbjct: 95 GGKDVEEAIALLSKHRGELRHHITRQM-TLKYAPDLRFRPDETFDRLDETRRLFSDETVQ 153
Query: 124 VAL 126
+
Sbjct: 154 RDI 156
>gi|304396349|ref|ZP_07378230.1| ribosome-binding factor A [Pantoea sp. aB]
gi|308189114|ref|YP_003933245.1| Ribosome-binding factor A [Pantoea vagans C9-1]
gi|304355858|gb|EFM20224.1| ribosome-binding factor A [Pantoea sp. aB]
gi|308059624|gb|ADO11796.1| Ribosome-binding factor A [Pantoea vagans C9-1]
Length = 136
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 37/126 (29%), Positives = 65/126 (51%), Gaps = 7/126 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K R RV +E++ + +IL E +D + ++++S V +S DL A V+++ D
Sbjct: 3 AKEFGRPQRVSQELQKEIA-MILQREIKDPRLG-MMVTVSGVEVSRDLAYAKVFVTFLND 60
Query: 66 VSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
D + + AL +IR +G+++R LR VPEL F YD SL +++ L+ +
Sbjct: 61 KDEDAIKHGLKALKEASGYIRILLGKAMR-LRIVPELTFFYDNSLVEGMRMSNLVTS-VV 118
Query: 123 PVALEK 128
E+
Sbjct: 119 KNDAER 124
>gi|15614974|ref|NP_243277.1| ribosome-binding factor A [Bacillus halodurans C-125]
gi|20139771|sp|Q9KA79|RBFA_BACHD RecName: Full=Ribosome-binding factor A
gi|10175031|dbj|BAB06130.1| ribosome-binding factor A [Bacillus halodurans C-125]
Length = 116
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 34/114 (29%), Positives = 63/114 (55%), Gaps = 5/114 (4%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
++ RA RVGE+++ L + + E +D I ++++ V ++ DL+ A VYI++ D
Sbjct: 1 MSNVRANRVGEQMKKELSDIFMR-ELKDPRIE--FVTVTGVDVTGDLQQANVYITVLGDD 57
Query: 67 S-PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ ++ L+ FIR IG+ +R LR PEL F +D S++ ++ L+
Sbjct: 58 EQKEATLAGLSKAKGFIRSEIGKRIR-LRKTPELFFHFDESIEYGNRIEKLLQD 110
>gi|253573568|ref|ZP_04850911.1| ribosome-binding factor A [Paenibacillus sp. oral taxon 786 str.
D14]
gi|251847096|gb|EES75101.1| ribosome-binding factor A [Paenibacillus sp. oral taxon 786 str.
D14]
Length = 117
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 33/108 (30%), Positives = 59/108 (54%), Gaps = 5/108 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS-PD 69
R RVGE+++ L V++ +E +D I ++++ V ++ DL A VY+S+ D +
Sbjct: 5 RTGRVGEQIKKELS-VLIQSELKDPRIG--FVTVTGVDVTNDLSQAKVYLSVFGDEEQKN 61
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ L F+R IG+ +R LR+ PEL F+ D S+ ++ L+
Sbjct: 62 ESLKGLEKATGFLRTEIGKRIR-LRHTPELIFKIDESIAYGSRIEKLL 108
>gi|152972091|ref|YP_001337237.1| ribosome-binding factor A [Klebsiella pneumoniae subsp. pneumoniae
MGH 78578]
gi|206575945|ref|YP_002236422.1| ribosome-binding factor A [Klebsiella pneumoniae 342]
gi|238896674|ref|YP_002921419.1| ribosome-binding factor A [Klebsiella pneumoniae NTUH-K2044]
gi|262042725|ref|ZP_06015879.1| ribosome-binding factor A [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|288933405|ref|YP_003437464.1| ribosome-binding factor A [Klebsiella variicola At-22]
gi|290511544|ref|ZP_06550913.1| ribosome-binding factor A [Klebsiella sp. 1_1_55]
gi|329997776|ref|ZP_08302915.1| ribosome-binding factor A [Klebsiella sp. MS 92-3]
gi|166218444|sp|A6TEI6|RBFA_KLEP7 RecName: Full=Ribosome-binding factor A
gi|226723604|sp|B5XSX5|RBFA_KLEP3 RecName: Full=Ribosome-binding factor A
gi|150956940|gb|ABR78970.1| ribosome-binding factor A [Klebsiella pneumoniae subsp. pneumoniae
MGH 78578]
gi|206565003|gb|ACI06779.1| ribosome-binding factor A [Klebsiella pneumoniae 342]
gi|238549001|dbj|BAH65352.1| ribosome-binding factor A [Klebsiella pneumoniae subsp. pneumoniae
NTUH-K2044]
gi|259039950|gb|EEW41067.1| ribosome-binding factor A [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|288888134|gb|ADC56452.1| ribosome-binding factor A [Klebsiella variicola At-22]
gi|289776537|gb|EFD84536.1| ribosome-binding factor A [Klebsiella sp. 1_1_55]
gi|328538910|gb|EGF64971.1| ribosome-binding factor A [Klebsiella sp. MS 92-3]
Length = 133
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 41/126 (32%), Positives = 63/126 (50%), Gaps = 7/126 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K R RV +E++ + +IL E +D + + ++S V MS DL A VY++ D
Sbjct: 2 AKEFGRPQRVAQEMQKEIA-IILQREIKDPRLG-MMTTVSGVEMSRDLAYAKVYVTFLND 59
Query: 66 VSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
V I AL FIR +G+++R LR VPEL F YD SL +++ L+ +
Sbjct: 60 KDEAAVKAGIKALQEASGFIRSLLGKAMR-LRIVPELTFFYDNSLVEGMRMSNLVTS-VV 117
Query: 123 PVALEK 128
E+
Sbjct: 118 KHDDER 123
>gi|251791034|ref|YP_003005755.1| ribosome-binding factor A [Dickeya zeae Ech1591]
gi|247539655|gb|ACT08276.1| ribosome-binding factor A [Dickeya zeae Ech1591]
Length = 133
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 38/126 (30%), Positives = 66/126 (52%), Gaps = 8/126 (6%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K R RV +E++ + +I+ E +D + + ++S V +S DL A V+++ D
Sbjct: 2 AKEFSRTQRVAQEMQKEIA-IIIQREVKDPRVG--MATVSGVEVSRDLAYAKVFVTFLND 58
Query: 66 VSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
P++V + AL FIR +G+++R LR VPEL F YD SL +++ L+ +
Sbjct: 59 NEPEQVKAGVKALQDASGFIRMLLGKAMR-LRVVPELTFSYDNSLVEGMRMSNLVTS-VV 116
Query: 123 PVALEK 128
E+
Sbjct: 117 KRDAER 122
>gi|167552067|ref|ZP_02345820.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA29]
gi|168243119|ref|ZP_02668051.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL486]
gi|168262704|ref|ZP_02684677.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Hadar str. RI_05P066]
gi|168463492|ref|ZP_02697409.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Newport str. SL317]
gi|194446175|ref|YP_002042542.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Newport str. SL254]
gi|194448489|ref|YP_002047314.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL476]
gi|197263114|ref|ZP_03163188.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA23]
gi|238690662|sp|B4TJ05|RBFA_SALHS RecName: Full=Ribosome-binding factor A
gi|238693632|sp|B4T6Z7|RBFA_SALNS RecName: Full=Ribosome-binding factor A
gi|194404838|gb|ACF65060.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Newport str. SL254]
gi|194406793|gb|ACF67012.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL476]
gi|195633310|gb|EDX51724.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Newport str. SL317]
gi|197241369|gb|EDY23989.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA23]
gi|205323213|gb|EDZ11052.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA29]
gi|205337734|gb|EDZ24498.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL486]
gi|205348416|gb|EDZ35047.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Hadar str. RI_05P066]
Length = 133
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 40/126 (31%), Positives = 63/126 (50%), Gaps = 7/126 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K R RV +E++ + +IL E +D + + ++S V MS DL A V+++ D
Sbjct: 2 AKEFGRPQRVAQEMQKEIA-IILQREIKDPRLG-MMTTVSGVEMSRDLAYAKVFVTFLND 59
Query: 66 VSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
V I AL FIR +G+++R LR VPEL F YD SL +++ L+ +
Sbjct: 60 QDEAAVKNGIKALQEASGFIRSLLGKAMR-LRIVPELTFFYDNSLVEGMRMSNLVTN-VV 117
Query: 123 PVALEK 128
E+
Sbjct: 118 KHDEER 123
>gi|332999246|gb|EGK18832.1| ribosome-binding factor A [Shigella flexneri K-272]
gi|333014968|gb|EGK34312.1| ribosome-binding factor A [Shigella flexneri K-227]
Length = 133
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 42/126 (33%), Positives = 64/126 (50%), Gaps = 7/126 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K R RV +E++ + +IL E +D + + ++S V MS DL A VY++ D
Sbjct: 2 AKEFGRPQRVAQEMQKEIA-LILQREIKDPRLG-MMTTVSSVEMSRDLAYAKVYVTFLND 59
Query: 66 VSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
D V I AL FIR +G+++R LR VPEL F YD SL +++ L+ +
Sbjct: 60 KDEDAVKAGIKALQEASGFIRSLLGKAMR-LRIVPELTFFYDNSLVEGMRMSNLVTS-VV 117
Query: 123 PVALEK 128
E+
Sbjct: 118 KHDEER 123
>gi|288556940|ref|YP_003428875.1| ribosome-binding factor A [Bacillus pseudofirmus OF4]
gi|288548100|gb|ADC51983.1| ribosome-binding factor A [Bacillus pseudofirmus OF4]
Length = 113
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 35/114 (30%), Positives = 64/114 (56%), Gaps = 5/114 (4%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
++ RA RVGE+++ L +I+ E +D IS ++I+ V ++ DL+ A V+I++ D
Sbjct: 1 MSNVRAHRVGEQMKKELSDIIMR-ELKDPRIS--FVTITGVDVTGDLQQAKVFITVLGDD 57
Query: 67 -SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ + L+ FIR IG+ +R LR PE+ F +D S++ ++ L+
Sbjct: 58 AQKESTLKGLSKAKGFIRSEIGKRIR-LRKTPEITFEFDESIEYGNRIETLIND 110
>gi|302381333|ref|YP_003817156.1| ribosome-binding factor A [Brevundimonas subvibrioides ATCC 15264]
gi|302191961|gb|ADK99532.1| ribosome-binding factor A [Brevundimonas subvibrioides ATCC 15264]
Length = 147
Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats.
Identities = 45/138 (32%), Positives = 76/138 (55%), Gaps = 14/138 (10%)
Query: 1 MKNKNPKN-----SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRV 55
M NK K+ S+R LR E +R AL+ V+ NE +D + ++++EV +S DL+
Sbjct: 1 MANKKSKSTAGLVSQRQLRASEMIRHALVEVMRENEIRDPALIGVSVTVTEVRLSPDLKH 60
Query: 56 ATVYISLPL--------DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSL 107
AT ++ D ++ ALN + KF+RG +GR + ++R+ P+LRFR+D S
Sbjct: 61 ATCFVEPLGAGIETSDTAGHIDEIVKALNTHAKFLRGALGRHI-DMRFTPDLRFRHDESF 119
Query: 108 QSYWKLNALMCLPKIPVA 125
+ +LN L+ P++
Sbjct: 120 AAAERLNRLLDDPRVRAD 137
>gi|260574496|ref|ZP_05842500.1| ribosome-binding factor A [Rhodobacter sp. SW2]
gi|259023392|gb|EEW26684.1| ribosome-binding factor A [Rhodobacter sp. SW2]
Length = 138
Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats.
Identities = 36/126 (28%), Positives = 60/126 (47%), Gaps = 1/126 (0%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
+ S+R LRVGE +R L ++ E D ++R I++ EV +S DL++AT Y+
Sbjct: 3 QNRSSSGPSQRQLRVGELIRRTLSDLLNRGEIHDPELNRMSITVGEVRLSNDLKIATAYV 62
Query: 61 SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
I+AL N +R RIG+ + L++ P+LRF D + + L
Sbjct: 63 MPLGGGDVAAAIAALKRNKYDLRHRIGQQM-TLKHTPDLRFLPDETFDRIEETRRLFANE 121
Query: 121 KIPVAL 126
+ +
Sbjct: 122 VVQRDI 127
>gi|52080272|ref|YP_079063.1| ribosome-binding factor A [Bacillus licheniformis ATCC 14580]
gi|52785649|ref|YP_091478.1| ribosome-binding factor A [Bacillus licheniformis ATCC 14580]
gi|319645948|ref|ZP_08000178.1| ribosome-binding factor A [Bacillus sp. BT1B_CT2]
gi|61214855|sp|Q65JH9|RBFA_BACLD RecName: Full=Ribosome-binding factor A
gi|52003483|gb|AAU23425.1| ribosome-binding factor A [Bacillus licheniformis ATCC 14580]
gi|52348151|gb|AAU40785.1| RbfA [Bacillus licheniformis ATCC 14580]
gi|317391698|gb|EFV72495.1| ribosome-binding factor A [Bacillus sp. BT1B_CT2]
Length = 117
Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats.
Identities = 34/109 (31%), Positives = 59/109 (54%), Gaps = 5/109 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP-D 69
RA RVGE+++ L +I + +D I +++++V +S DL++A VYIS+ D +
Sbjct: 4 RATRVGEQMKKELGDIIGR-KLKDPRIG--FLTVTDVRVSGDLQIAKVYISVLGDEKKRE 60
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ L FIR +G +R LR PE+ F +D S+ ++ L+
Sbjct: 61 ETLKGLAKAKGFIRSELGNRIR-LRKTPEIHFEFDESIDYGNRIETLIH 108
>gi|83855206|ref|ZP_00948736.1| ribosome-binding factor A [Sulfitobacter sp. NAS-14.1]
gi|83941728|ref|ZP_00954190.1| ribosome-binding factor A [Sulfitobacter sp. EE-36]
gi|83843049|gb|EAP82216.1| ribosome-binding factor A [Sulfitobacter sp. NAS-14.1]
gi|83847548|gb|EAP85423.1| ribosome-binding factor A [Sulfitobacter sp. EE-36]
Length = 142
Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats.
Identities = 34/124 (27%), Positives = 60/124 (48%), Gaps = 1/124 (0%)
Query: 4 KNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP 63
+ S+R LRVGE +R AL V+ + D ++R I++ EV S DL++AT Y+
Sbjct: 11 EGSGPSQRQLRVGETIRRALSDVLARGDVHDPELNRMSITVGEVRASPDLKIATAYVLPL 70
Query: 64 LDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIP 123
+ V+ L N +R + + L L+Y P+LRF+ D + + ++ +
Sbjct: 71 GGDGQEDVLKLLARNKGELRRLMAKKL-VLKYAPDLRFQLDETFDRMDETRRMLAQDVVR 129
Query: 124 VALE 127
+
Sbjct: 130 RDAD 133
>gi|317046742|ref|YP_004114390.1| ribosome-binding factor A [Pantoea sp. At-9b]
gi|316948359|gb|ADU67834.1| ribosome-binding factor A [Pantoea sp. At-9b]
Length = 135
Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats.
Identities = 37/126 (29%), Positives = 65/126 (51%), Gaps = 7/126 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K R RV +E++ + +IL E +D + ++++S V +S DL A V+++ D
Sbjct: 2 AKEFGRPQRVSQELQKEIA-IILQREIKDPRLG-MMVTVSGVEVSRDLAYAKVFVTFLND 59
Query: 66 VSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
+ V + AL +IR +G+++R LR VPEL F YD SL +++ L+ +
Sbjct: 60 KDEEAVKNGLKALKEASGYIRTLVGKAMR-LRIVPELTFFYDNSLIEGMRMSNLVTN-VV 117
Query: 123 PVALEK 128
E+
Sbjct: 118 KNDAER 123
>gi|295097656|emb|CBK86746.1| ribosome-binding factor A [Enterobacter cloacae subsp. cloacae NCTC
9394]
Length = 134
Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats.
Identities = 41/126 (32%), Positives = 64/126 (50%), Gaps = 7/126 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K R RV +E++ + +IL E +D + + ++S V MS DL A V+++ D
Sbjct: 2 AKEFGRPQRVAQEMQKEIA-LILQREIKDPRVG-MMTTVSGVEMSRDLAYAKVFVTFLND 59
Query: 66 VSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
D V I AL FIR +G+++R LR VPEL F YD SL +++ L+ +
Sbjct: 60 QDEDAVKNGIKALQEASGFIRSLLGKAMR-LRIVPELTFFYDNSLVEGMRMSNLVTS-VV 117
Query: 123 PVALEK 128
E+
Sbjct: 118 KHDDER 123
>gi|83950711|ref|ZP_00959444.1| ribosome-binding factor A [Roseovarius nubinhibens ISM]
gi|83838610|gb|EAP77906.1| ribosome-binding factor A [Roseovarius nubinhibens ISM]
Length = 131
Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats.
Identities = 40/123 (32%), Positives = 61/123 (49%), Gaps = 1/123 (0%)
Query: 5 NPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL 64
P S+R LRVGE +R L V++ + D ++R +++ EV S DL++AT Y+
Sbjct: 9 GPGPSQRQLRVGELIRRTLSEVLMRGDIHDPELNRMSVTVGEVRTSPDLKIATAYVLPLG 68
Query: 65 DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPV 124
D ++ L N +R IGR L L+Y PELRFR D + + L +
Sbjct: 69 GKGQDVIVGLLARNQSELRRIIGRKL-GLKYAPELRFRLDQTFDQMDETRRLFDQDDVRR 127
Query: 125 ALE 127
+E
Sbjct: 128 DVE 130
>gi|311277860|ref|YP_003940091.1| ribosome-binding factor A [Enterobacter cloacae SCF1]
gi|308747055|gb|ADO46807.1| ribosome-binding factor A [Enterobacter cloacae SCF1]
Length = 134
Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats.
Identities = 40/126 (31%), Positives = 63/126 (50%), Gaps = 7/126 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K R RV +E++ + +IL E +D + + ++S V MS DL A V+++ D
Sbjct: 2 AKEFGRPQRVAQEMQKEIA-IILQREIKDPRLG-MMTTVSGVEMSRDLAYAKVFVTFLND 59
Query: 66 VSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
V I AL FIR +G+++R LR VPEL F YD SL +++ L+ +
Sbjct: 60 KDEAAVKAGIKALQEASGFIRSLLGKAMR-LRIVPELTFFYDNSLVEGMRMSNLVTS-VV 117
Query: 123 PVALEK 128
E+
Sbjct: 118 KHDDER 123
>gi|157692348|ref|YP_001486810.1| ribosome-binding factor A [Bacillus pumilus SAFR-032]
gi|166918673|sp|A8FDD3|RBFA_BACP2 RecName: Full=Ribosome-binding factor A
gi|157681106|gb|ABV62250.1| ribosome-binding factor A [Bacillus pumilus SAFR-032]
Length = 116
Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats.
Identities = 35/111 (31%), Positives = 61/111 (54%), Gaps = 5/111 (4%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
S RA RVGE+++ L ++ + +D I +++++V +S DL++A VYIS+ D
Sbjct: 2 SMRATRVGEQMKKELGDILGR-KLKDPRIG--FLTVTDVEVSGDLQIAKVYISVLGDEKK 58
Query: 69 -DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ + L +IR IG +R LR PEL F +D S+ ++ +L+
Sbjct: 59 REETLKGLAKAKGYIRSEIGNRIR-LRKTPELHFEFDESVDYGNRIESLIA 108
>gi|237730087|ref|ZP_04560568.1| ribosome-binding factor A [Citrobacter sp. 30_2]
gi|226908693|gb|EEH94611.1| ribosome-binding factor A [Citrobacter sp. 30_2]
Length = 140
Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats.
Identities = 40/126 (31%), Positives = 63/126 (50%), Gaps = 7/126 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K R RV +E++ + +IL E +D + + ++S V MS DL A V+++ D
Sbjct: 8 AKEFGRPQRVAQEMQKEIA-LILQREIKDPRVG-MMTTVSGVEMSRDLAYAKVFVTFLND 65
Query: 66 VSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
V I AL FIR +G+++R LR VPEL F YD SL +++ L+ +
Sbjct: 66 QDEAAVKNGIKALQEASGFIRSLLGKAMR-LRIVPELTFFYDNSLVEGMRMSNLVTS-VV 123
Query: 123 PVALEK 128
E+
Sbjct: 124 KHDDER 129
>gi|159045581|ref|YP_001534375.1| ribosome-binding factor A [Dinoroseobacter shibae DFL 12]
gi|189039539|sp|A8LL25|RBFA_DINSH RecName: Full=Ribosome-binding factor A
gi|157913341|gb|ABV94774.1| ribosome-binding factor A [Dinoroseobacter shibae DFL 12]
Length = 135
Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats.
Identities = 37/126 (29%), Positives = 60/126 (47%), Gaps = 1/126 (0%)
Query: 3 NKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL 62
+ S+R LRVGE +R L V+ + D ++R I++ EV S DL+VAT Y+
Sbjct: 7 DTGSGPSQRQLRVGELIRRTLSSVLNQGDIHDPDLNRMSITVGEVRTSPDLKVATAYVLP 66
Query: 63 PLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
+ AL N +R + + L L++ PELRF+ D + + L+ +
Sbjct: 67 LGGHGAQDALDALRRNRHELRRAVSKEL-TLKFSPELRFQIDETFDRMDETRRLLSQDHV 125
Query: 123 PVALEK 128
L+K
Sbjct: 126 RQDLDK 131
>gi|194014192|ref|ZP_03052809.1| ribosome-binding factor A [Bacillus pumilus ATCC 7061]
gi|194013218|gb|EDW22783.1| ribosome-binding factor A [Bacillus pumilus ATCC 7061]
Length = 116
Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats.
Identities = 34/111 (30%), Positives = 61/111 (54%), Gaps = 5/111 (4%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
S RA RVGE+++ L ++ + +D I +++++V ++ DL++A VYIS+ D
Sbjct: 2 SMRATRVGEQMKKELGDILGR-KLKDPRIG--FLTVTDVEVTGDLQIAKVYISVLGDEKK 58
Query: 69 -DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ + L +IR IG +R LR PEL F +D S+ ++ +L+
Sbjct: 59 REETLKGLAKAKGYIRSEIGNRIR-LRKTPELHFEFDESVDYGNRIESLIA 108
>gi|87200501|ref|YP_497758.1| ribosome-binding factor A [Novosphingobium aromaticivorans DSM
12444]
gi|123488757|sp|Q2G5E9|RBFA_NOVAD RecName: Full=Ribosome-binding factor A
gi|87136182|gb|ABD26924.1| ribosome-binding factor A [Novosphingobium aromaticivorans DSM
12444]
Length = 135
Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats.
Identities = 44/118 (37%), Positives = 63/118 (53%), Gaps = 1/118 (0%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
S R L+VGE+VR L ++ E D ++S +S++EV MS DLR ATV+I L
Sbjct: 12 SVRLLKVGEQVRHILSELLARQEVHDDVLSAHTVSVTEVRMSPDLRHATVFIKALLGEDE 71
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVAL 126
D V+ AL N F + + + LR L+Y L+F D S K+ L+ PK+ L
Sbjct: 72 DLVLKALRTNTAFFQREVAQRLR-LKYAARLKFLADESFDVASKIETLLADPKVQRDL 128
>gi|49478390|ref|YP_037872.1| ribosome-binding factor A [Bacillus thuringiensis serovar konkukian
str. 97-27]
gi|52141678|ref|YP_085152.1| ribosome-binding factor A [Bacillus cereus E33L]
gi|118479031|ref|YP_896182.1| ribosome-binding factor A [Bacillus thuringiensis str. Al Hakam]
gi|196042166|ref|ZP_03109449.1| ribosome-binding factor A [Bacillus cereus NVH0597-99]
gi|196044539|ref|ZP_03111774.1| ribosome-binding factor A [Bacillus cereus 03BB108]
gi|225865790|ref|YP_002751168.1| ribosome-binding factor A [Bacillus cereus 03BB102]
gi|229092851|ref|ZP_04223985.1| Ribosome-binding factor A [Bacillus cereus Rock3-42]
gi|229186048|ref|ZP_04313218.1| Ribosome-binding factor A [Bacillus cereus BGSC 6E1]
gi|301055301|ref|YP_003793512.1| ribosome-binding factor A [Bacillus anthracis CI]
gi|61214843|sp|Q636L5|RBFA_BACCZ RecName: Full=Ribosome-binding factor A
gi|61215017|sp|Q6HF04|RBFA_BACHK RecName: Full=Ribosome-binding factor A
gi|166218421|sp|A0RHI2|RBFA_BACAH RecName: Full=Ribosome-binding factor A
gi|254789732|sp|C1EP33|RBFA_BACC3 RecName: Full=Ribosome-binding factor A
gi|49329946|gb|AAT60592.1| ribosome-binding factor A [Bacillus thuringiensis serovar konkukian
str. 97-27]
gi|51975147|gb|AAU16697.1| ribosome-binding factor A [Bacillus cereus E33L]
gi|118418256|gb|ABK86675.1| ribosome-binding factor A [Bacillus thuringiensis str. Al Hakam]
gi|196024574|gb|EDX63246.1| ribosome-binding factor A [Bacillus cereus 03BB108]
gi|196027018|gb|EDX65642.1| ribosome-binding factor A [Bacillus cereus NVH0597-99]
gi|225790371|gb|ACO30588.1| ribosome-binding factor A [Bacillus cereus 03BB102]
gi|228597467|gb|EEK55117.1| Ribosome-binding factor A [Bacillus cereus BGSC 6E1]
gi|228690473|gb|EEL44256.1| Ribosome-binding factor A [Bacillus cereus Rock3-42]
gi|300377470|gb|ADK06374.1| ribosome-binding factor A [Bacillus cereus biovar anthracis str.
CI]
Length = 118
Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats.
Identities = 35/110 (31%), Positives = 62/110 (56%), Gaps = 5/110 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS-PD 69
RA RVGE+++ L +I + +D + +++++V +S DL++ATVYIS+ D +
Sbjct: 4 RANRVGEQMKKELGDIISR-KIKDPRVG--FVTVTDVQVSGDLQIATVYISVLGDEEQKE 60
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ L FIR IG+ +R LR PE+ F +D S+ +++ L+
Sbjct: 61 NTLKGLAKAKGFIRSEIGQRIR-LRKTPEISFEFDESIGYGHRIDTLLHQ 109
>gi|294500895|ref|YP_003564595.1| ribosome-binding factor A [Bacillus megaterium QM B1551]
gi|295706241|ref|YP_003599316.1| ribosome-binding factor A [Bacillus megaterium DSM 319]
gi|294350832|gb|ADE71161.1| ribosome-binding factor A [Bacillus megaterium QM B1551]
gi|294803900|gb|ADF40966.1| ribosome-binding factor A [Bacillus megaterium DSM 319]
Length = 121
Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats.
Identities = 35/119 (29%), Positives = 63/119 (52%), Gaps = 5/119 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD-VSPD 69
RA RVGE+++ + ++ N + +D I +++++V +S DL+ A VYIS+ D +
Sbjct: 4 RATRVGEQMKKEMGEIL-NRKIKDPRIG--FVTVTDVQVSGDLQQAKVYISVLGDAEQRE 60
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALEK 128
+ L FIR IG+ +R LR PE+ F +D S+ ++ +L+ K +
Sbjct: 61 NTLKGLAKAKGFIRSEIGQRIR-LRKTPEITFEFDESIDYGNRIESLLHEIKKESDDHQ 118
>gi|311068188|ref|YP_003973111.1| ribosome-binding factor A [Bacillus atrophaeus 1942]
gi|310868705|gb|ADP32180.1| ribosome-binding factor A [Bacillus atrophaeus 1942]
Length = 117
Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats.
Identities = 36/120 (30%), Positives = 61/120 (50%), Gaps = 5/120 (4%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
S RA RVGE+++ L +I + +D I +++++V ++ DL++A VYIS+ D
Sbjct: 2 SMRANRVGEQMKKELGDIISR-KLKDPRIG--FLTVTDVRVTGDLQIAKVYISVLGDEKK 58
Query: 69 -DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALE 127
+ + L FIR IG +R LR PE+ F +D S+ ++ L+ E
Sbjct: 59 REEALKGLEKAKGFIRSEIGSRIR-LRKTPEIEFEFDESIDYGNRIETLIHQLHSDKDSE 117
>gi|16124293|ref|NP_418857.1| ribosome-binding factor A [Caulobacter crescentus CB15]
gi|221232975|ref|YP_002515411.1| ribosome-binding factor A [Caulobacter crescentus NA1000]
gi|20978655|sp|Q9AC30|RBFA_CAUCR RecName: Full=Ribosome-binding factor A
gi|254789739|sp|B8GWZ3|RBFA_CAUCN RecName: Full=Ribosome-binding factor A
gi|13421129|gb|AAK22025.1| ribosome-binding factor A [Caulobacter crescentus CB15]
gi|220962147|gb|ACL93503.1| ribosome-binding factor A [Caulobacter crescentus NA1000]
Length = 149
Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats.
Identities = 38/123 (30%), Positives = 66/123 (53%), Gaps = 5/123 (4%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-- 64
S+R LR GE +R AL+ ++ E QD + +++SEV MS DL+ A ++
Sbjct: 14 GPSQRQLRAGELIRHALVEILREEELQDEALQNISVTVSEVRMSPDLKHAICFVEPLGAG 73
Query: 65 --DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
+I LN KF+RGR+GRS+ ++++ P+L+F +D S + ++ L P++
Sbjct: 74 LTGQDTTDIIKGLNRVSKFLRGRLGRSI-DMKFTPDLKFIHDESFGTAAYMDKLFLDPRV 132
Query: 123 PVA 125
Sbjct: 133 QQD 135
>gi|182676604|sp|A7Z4T6|RBFA_BACA2 RecName: Full=Ribosome-binding factor A
gi|328553440|gb|AEB23932.1| ribosome-binding factor A [Bacillus amyloliquefaciens TA208]
Length = 117
Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats.
Identities = 36/114 (31%), Positives = 60/114 (52%), Gaps = 5/114 (4%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV-S 67
S RA RVGE+++ L +I + +D I +++++V +S DL++A VYIS+
Sbjct: 2 SMRANRVGEQMKKELGDIISR-KLKDPRIG--FLTVTDVRVSGDLQIAKVYISVLGGEKK 58
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+ + L FIR IG +R LR PEL F +D S++ ++ L+
Sbjct: 59 KEEALKGLEKAKGFIRSEIGSRIR-LRKTPELEFEFDESIEYGNRIETLIHELH 111
>gi|30021900|ref|NP_833531.1| ribosome-binding factor A [Bacillus cereus ATCC 14579]
gi|163941548|ref|YP_001646432.1| ribosome-binding factor A [Bacillus weihenstephanensis KBAB4]
gi|206972662|ref|ZP_03233603.1| ribosome-binding factor A [Bacillus cereus AH1134]
gi|218235779|ref|YP_002368612.1| ribosome-binding factor A [Bacillus cereus B4264]
gi|218898963|ref|YP_002447374.1| ribosome-binding factor A [Bacillus cereus G9842]
gi|228902314|ref|ZP_04066471.1| Ribosome-binding factor A [Bacillus thuringiensis IBL 4222]
gi|228909635|ref|ZP_04073458.1| Ribosome-binding factor A [Bacillus thuringiensis IBL 200]
gi|228922565|ref|ZP_04085865.1| Ribosome-binding factor A [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228940899|ref|ZP_04103458.1| Ribosome-binding factor A [Bacillus thuringiensis serovar berliner
ATCC 10792]
gi|228954087|ref|ZP_04116116.1| Ribosome-binding factor A [Bacillus thuringiensis serovar kurstaki
str. T03a001]
gi|228960027|ref|ZP_04121691.1| Ribosome-binding factor A [Bacillus thuringiensis serovar pakistani
str. T13001]
gi|228966756|ref|ZP_04127800.1| Ribosome-binding factor A [Bacillus thuringiensis serovar sotto
str. T04001]
gi|228973828|ref|ZP_04134404.1| Ribosome-binding factor A [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228980417|ref|ZP_04140727.1| Ribosome-binding factor A [Bacillus thuringiensis Bt407]
gi|229012994|ref|ZP_04170159.1| Ribosome-binding factor A [Bacillus mycoides DSM 2048]
gi|229047497|ref|ZP_04193087.1| Ribosome-binding factor A [Bacillus cereus AH676]
gi|229061414|ref|ZP_04198759.1| Ribosome-binding factor A [Bacillus cereus AH603]
gi|229071309|ref|ZP_04204532.1| Ribosome-binding factor A [Bacillus cereus F65185]
gi|229081066|ref|ZP_04213576.1| Ribosome-binding factor A [Bacillus cereus Rock4-2]
gi|229111282|ref|ZP_04240835.1| Ribosome-binding factor A [Bacillus cereus Rock1-15]
gi|229129087|ref|ZP_04258060.1| Ribosome-binding factor A [Bacillus cereus BDRD-Cer4]
gi|229134618|ref|ZP_04263428.1| Ribosome-binding factor A [Bacillus cereus BDRD-ST196]
gi|229146382|ref|ZP_04274753.1| Ribosome-binding factor A [Bacillus cereus BDRD-ST24]
gi|229152010|ref|ZP_04280205.1| Ribosome-binding factor A [Bacillus cereus m1550]
gi|229168550|ref|ZP_04296273.1| Ribosome-binding factor A [Bacillus cereus AH621]
gi|229180087|ref|ZP_04307431.1| Ribosome-binding factor A [Bacillus cereus 172560W]
gi|229191980|ref|ZP_04318950.1| Ribosome-binding factor A [Bacillus cereus ATCC 10876]
gi|296504306|ref|YP_003666006.1| ribosome-binding factor A [Bacillus thuringiensis BMB171]
gi|33301481|sp|Q819Y8|RBFA_BACCR RecName: Full=Ribosome-binding factor A
gi|226723592|sp|A9VT48|RBFA_BACWK RecName: Full=Ribosome-binding factor A
gi|226736636|sp|B7IUG9|RBFA_BACC2 RecName: Full=Ribosome-binding factor A
gi|226736637|sp|B7HDT4|RBFA_BACC4 RecName: Full=Ribosome-binding factor A
gi|29897456|gb|AAP10732.1| Ribosome-binding factor A [Bacillus cereus ATCC 14579]
gi|163863745|gb|ABY44804.1| ribosome-binding factor A [Bacillus weihenstephanensis KBAB4]
gi|206732419|gb|EDZ49600.1| ribosome-binding factor A [Bacillus cereus AH1134]
gi|218163736|gb|ACK63728.1| ribosome-binding factor A [Bacillus cereus B4264]
gi|218545696|gb|ACK98090.1| ribosome-binding factor A [Bacillus cereus G9842]
gi|228591531|gb|EEK49380.1| Ribosome-binding factor A [Bacillus cereus ATCC 10876]
gi|228603296|gb|EEK60773.1| Ribosome-binding factor A [Bacillus cereus 172560W]
gi|228614956|gb|EEK72058.1| Ribosome-binding factor A [Bacillus cereus AH621]
gi|228631359|gb|EEK87993.1| Ribosome-binding factor A [Bacillus cereus m1550]
gi|228637015|gb|EEK93474.1| Ribosome-binding factor A [Bacillus cereus BDRD-ST24]
gi|228648879|gb|EEL04904.1| Ribosome-binding factor A [Bacillus cereus BDRD-ST196]
gi|228654324|gb|EEL10189.1| Ribosome-binding factor A [Bacillus cereus BDRD-Cer4]
gi|228672058|gb|EEL27349.1| Ribosome-binding factor A [Bacillus cereus Rock1-15]
gi|228702110|gb|EEL54586.1| Ribosome-binding factor A [Bacillus cereus Rock4-2]
gi|228711763|gb|EEL63715.1| Ribosome-binding factor A [Bacillus cereus F65185]
gi|228717837|gb|EEL69485.1| Ribosome-binding factor A [Bacillus cereus AH603]
gi|228723744|gb|EEL75099.1| Ribosome-binding factor A [Bacillus cereus AH676]
gi|228748248|gb|EEL98108.1| Ribosome-binding factor A [Bacillus mycoides DSM 2048]
gi|228779237|gb|EEM27494.1| Ribosome-binding factor A [Bacillus thuringiensis Bt407]
gi|228785853|gb|EEM33856.1| Ribosome-binding factor A [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228792855|gb|EEM40413.1| Ribosome-binding factor A [Bacillus thuringiensis serovar sotto
str. T04001]
gi|228799543|gb|EEM46496.1| Ribosome-binding factor A [Bacillus thuringiensis serovar pakistani
str. T13001]
gi|228805653|gb|EEM52243.1| Ribosome-binding factor A [Bacillus thuringiensis serovar kurstaki
str. T03a001]
gi|228818735|gb|EEM64801.1| Ribosome-binding factor A [Bacillus thuringiensis serovar berliner
ATCC 10792]
gi|228836994|gb|EEM82335.1| Ribosome-binding factor A [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228849924|gb|EEM94755.1| Ribosome-binding factor A [Bacillus thuringiensis IBL 200]
gi|228857283|gb|EEN01786.1| Ribosome-binding factor A [Bacillus thuringiensis IBL 4222]
gi|296325358|gb|ADH08286.1| ribosome-binding factor A [Bacillus thuringiensis BMB171]
gi|326941577|gb|AEA17473.1| ribosome-binding factor A [Bacillus thuringiensis serovar chinensis
CT-43]
Length = 118
Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats.
Identities = 35/109 (32%), Positives = 61/109 (55%), Gaps = 5/109 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS-PD 69
RA RVGE+++ L +I + +D I +++++V +S DL++A VYIS+ D +
Sbjct: 4 RANRVGEQMKKELGDIISR-KIKDPRIG--FVTVTDVQVSGDLQIAKVYISVLGDEEQKE 60
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ L FIR IG+ +R LR PE+ F +D S+ +++ L+
Sbjct: 61 NTLKGLAKAKGFIRSEIGQRIR-LRKTPEITFEFDESIGYGHRIDTLLH 108
>gi|261419465|ref|YP_003253147.1| ribosome-binding factor A [Geobacillus sp. Y412MC61]
gi|297530560|ref|YP_003671835.1| ribosome-binding factor A [Geobacillus sp. C56-T3]
gi|319766280|ref|YP_004131781.1| ribosome-binding factor A [Geobacillus sp. Y412MC52]
gi|261375922|gb|ACX78665.1| ribosome-binding factor A [Geobacillus sp. Y412MC61]
gi|297253812|gb|ADI27258.1| ribosome-binding factor A [Geobacillus sp. C56-T3]
gi|317111146|gb|ADU93638.1| ribosome-binding factor A [Geobacillus sp. Y412MC52]
Length = 127
Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats.
Identities = 34/110 (30%), Positives = 59/110 (53%), Gaps = 5/110 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP-D 69
RA RVGE+++ L +I +D I +++++V ++ DL+ A VYIS+ D +
Sbjct: 4 RATRVGEQMKKELSDIISRR-LKDPRIG--FVTVTDVRVTGDLQQAKVYISVLGDDKQRE 60
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ AL FIR IG+ +R LR PE+ F D +++ ++ L+
Sbjct: 61 NTLKALEKAKGFIRSEIGQRIR-LRKTPEIFFEIDETIEYGSRIEQLIRQ 109
>gi|16762050|ref|NP_457667.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Typhi str. CT18]
gi|29143539|ref|NP_806881.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|56415217|ref|YP_152292.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|62181796|ref|YP_218213.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SC-B67]
gi|161616291|ref|YP_001590256.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Paratyphi B str. SPB7]
gi|168819646|ref|ZP_02831646.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Weltevreden str. HI_N05-537]
gi|197247816|ref|YP_002148211.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Agona str. SL483]
gi|197364147|ref|YP_002143784.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|204928299|ref|ZP_03219499.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Javiana str. GA_MM04042433]
gi|213029804|ref|ZP_03344251.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Typhi str. 404ty]
gi|213052980|ref|ZP_03345858.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Typhi str. E00-7866]
gi|213416951|ref|ZP_03350095.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Typhi str. E01-6750]
gi|213425435|ref|ZP_03358185.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Typhi str. E02-1180]
gi|213582314|ref|ZP_03364140.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Typhi str. E98-0664]
gi|213620436|ref|ZP_03373262.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Typhi str. E98-2068]
gi|213646147|ref|ZP_03376200.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Typhi str. J185]
gi|213852745|ref|ZP_03382277.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Typhi str. M223]
gi|224585083|ref|YP_002638882.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|238910080|ref|ZP_04653917.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Tennessee str. CDC07-0191]
gi|289810349|ref|ZP_06540978.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Typhi str. AG3]
gi|289825799|ref|ZP_06544967.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Typhi str. E98-3139]
gi|20978598|sp|Q8Z3H8|RBFA_SALTI RecName: Full=Ribosome-binding factor A
gi|61214734|sp|Q5PLB1|RBFA_SALPA RecName: Full=Ribosome-binding factor A
gi|75480587|sp|Q57JI0|RBFA_SALCH RecName: Full=Ribosome-binding factor A
gi|189039556|sp|A9N731|RBFA_SALPB RecName: Full=Ribosome-binding factor A
gi|226723607|sp|B5F6T7|RBFA_SALA4 RecName: Full=Ribosome-binding factor A
gi|238690733|sp|B5BGJ4|RBFA_SALPK RecName: Full=Ribosome-binding factor A
gi|254789762|sp|C0PZ53|RBFA_SALPC RecName: Full=Ribosome-binding factor A
gi|25302109|pir||AG0901 ribosome-binding factor A (P15B protein) [imported] - Salmonella
enterica subsp. enterica serovar Typhi (strain CT18)
gi|16504353|emb|CAD07805.1| ribosome-binding factor A (P15B protein) [Salmonella enterica
subsp. enterica serovar Typhi]
gi|29139173|gb|AAO70741.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|56129474|gb|AAV78980.1| ribosome-binding factor A (P15B protein) [Salmonella enterica
subsp. enterica serovar Paratyphi A str. ATCC 9150]
gi|62129429|gb|AAX67132.1| tRNA pseudouridine 5S synthase [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SC-B67]
gi|161365655|gb|ABX69423.1| hypothetical protein SPAB_04097 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|197095624|emb|CAR61192.1| ribosome-binding factor A (P15B protein) [Salmonella enterica
subsp. enterica serovar Paratyphi A str. AKU_12601]
gi|197211519|gb|ACH48916.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Agona str. SL483]
gi|204322621|gb|EDZ07818.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Javiana str. GA_MM04042433]
gi|205343329|gb|EDZ30093.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Weltevreden str. HI_N05-537]
gi|224469611|gb|ACN47441.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|320087732|emb|CBY97496.1| Ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Weltevreden str. 2007-60-3289-1]
gi|322716283|gb|EFZ07854.1| ribosome-binding factor A [Salmonella enterica subsp. enterica
serovar Choleraesuis str. A50]
Length = 133
Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats.
Identities = 40/126 (31%), Positives = 63/126 (50%), Gaps = 7/126 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K R RV +E++ + +IL E +D + + ++S V MS DL A V+++ D
Sbjct: 2 AKEFGRPQRVAQEMQKEIA-LILQREIKDPRVG-MMTTVSGVEMSRDLAYAKVFVTFLND 59
Query: 66 VSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
V I AL FIR +G+++R LR VPEL F YD SL +++ L+ +
Sbjct: 60 QDEAAVKNGIKALQEASGFIRSLLGKAMR-LRIVPELTFFYDNSLVEGMRMSNLVTN-VV 117
Query: 123 PVALEK 128
E+
Sbjct: 118 KHDEER 123
>gi|283836287|ref|ZP_06356028.1| ribosome-binding factor A [Citrobacter youngae ATCC 29220]
gi|291067650|gb|EFE05759.1| ribosome-binding factor A [Citrobacter youngae ATCC 29220]
Length = 134
Score = 137 bits (347), Expect = 4e-31, Method: Composition-based stats.
Identities = 40/126 (31%), Positives = 63/126 (50%), Gaps = 7/126 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K R RV +E++ + +IL E +D + + ++S V MS DL A V+++ D
Sbjct: 2 AKEFGRPQRVAQEMQKEIA-LILQREIKDPRVG-MMTTVSGVEMSRDLAYAKVFVTFLND 59
Query: 66 VSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
V I AL FIR +G+++R LR VPEL F YD SL +++ L+ +
Sbjct: 60 QDEAAVKNGIKALQEASGFIRSLLGKAMR-LRIVPELTFFYDNSLVEGMRMSNLVTS-VV 117
Query: 123 PVALEK 128
E+
Sbjct: 118 KHDDER 123
>gi|260427176|ref|ZP_05781155.1| ribosome-binding factor A [Citreicella sp. SE45]
gi|260421668|gb|EEX14919.1| ribosome-binding factor A [Citreicella sp. SE45]
Length = 132
Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats.
Identities = 37/126 (29%), Positives = 60/126 (47%), Gaps = 1/126 (0%)
Query: 3 NKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL 62
S+R LRVGE +R L V+ + D ++R I++ EV +S DL+VAT Y+
Sbjct: 7 QDGHGPSQRQLRVGELIRRTLSDVLTRGDIHDPELNRLSITVGEVVVSPDLKVATAYVVP 66
Query: 63 PLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
+ D + L N +R + + L L++ PELRF+ D + + L +
Sbjct: 67 LGGGASDEMFDLLKRNRSELRRAVSKGL-TLKFAPELRFKLDETFDRLDETRRLFAQDAV 125
Query: 123 PVALEK 128
LE+
Sbjct: 126 RRDLEE 131
>gi|307129386|ref|YP_003881402.1| 30S ribosome binding factor [Dickeya dadantii 3937]
gi|306526915|gb|ADM96845.1| 30S ribosome binding factor [Dickeya dadantii 3937]
Length = 133
Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats.
Identities = 38/126 (30%), Positives = 67/126 (53%), Gaps = 8/126 (6%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K R RV +E++ + +I+ E +D + + ++S V +S DL A V+++ D
Sbjct: 2 AKEFSRTQRVAQEMQKEIA-IIIQREVKDPRVG--MATVSGVEVSRDLAYAKVFVTFLND 58
Query: 66 VSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
P++V + AL FIR +G+++R LR VPEL F YD SL +++ L+ +
Sbjct: 59 NEPEQVKAGVKALQDASGFIRMLLGKAMR-LRVVPELTFSYDNSLVEGMRMSNLVTK-VV 116
Query: 123 PVALEK 128
+E+
Sbjct: 117 KRDVER 122
>gi|261342613|ref|ZP_05970471.1| ribosome-binding factor A [Enterobacter cancerogenus ATCC 35316]
gi|296104881|ref|YP_003615027.1| ribosome-binding factor A [Enterobacter cloacae subsp. cloacae ATCC
13047]
gi|288315260|gb|EFC54198.1| ribosome-binding factor A [Enterobacter cancerogenus ATCC 35316]
gi|295059340|gb|ADF64078.1| ribosome-binding factor A [Enterobacter cloacae subsp. cloacae ATCC
13047]
Length = 134
Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats.
Identities = 40/126 (31%), Positives = 63/126 (50%), Gaps = 7/126 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K R RV +E++ + +IL E +D + + ++S V MS DL A V+++ D
Sbjct: 2 AKEFGRPQRVAQEMQKEIA-LILQREIKDPRVG-MMTTVSGVEMSRDLAYAKVFVTFLND 59
Query: 66 VSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
V I AL FIR +G+++R LR VPEL F YD SL +++ L+ +
Sbjct: 60 QDEAAVKNGIKALQEASGFIRSLLGKAMR-LRIVPELTFFYDNSLVEGMRMSNLVTS-VV 117
Query: 123 PVALEK 128
E+
Sbjct: 118 KHDDER 123
>gi|152976177|ref|YP_001375694.1| ribosome-binding factor A [Bacillus cereus subsp. cytotoxis NVH
391-98]
gi|189039526|sp|A7GRE1|RBFA_BACCN RecName: Full=Ribosome-binding factor A
gi|152024929|gb|ABS22699.1| ribosome-binding factor A [Bacillus cytotoxicus NVH 391-98]
Length = 118
Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats.
Identities = 35/109 (32%), Positives = 62/109 (56%), Gaps = 5/109 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS-PD 69
RA RVGE+++ L +I + +D + +++++V +S DL++ATVYIS+ D +
Sbjct: 4 RANRVGEQMKKELGDIISR-KIKDPRVG--FVTVTDVKVSGDLQIATVYISVLGDEEQKE 60
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ L FIR IG+ +R LR PE+ F +D S+ +++ L+
Sbjct: 61 NTLKGLAKAKGFIRSEIGQRIR-LRKTPEISFEFDESIGYGHRIDTLLH 108
>gi|296132889|ref|YP_003640136.1| ribosome-binding factor A [Thermincola sp. JR]
gi|296031467|gb|ADG82235.1| ribosome-binding factor A [Thermincola potens JR]
Length = 120
Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 63/120 (52%), Gaps = 7/120 (5%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLD 65
+ RA RV E ++ + ++ E +D I ++++ V + DLR A +YIS+ D
Sbjct: 1 MSGHRASRVAEAIKKEVTQML-GGEIKDPRIG--FVTVTGVEVCPDLRHARIYISVYGSD 57
Query: 66 VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
+ + ALN F+R +G+ +R LRY PE+ FR+D S++ ++ L+ ++
Sbjct: 58 EEKAQTLQALNKAKGFVRSELGKRIR-LRYTPEVEFRFDESIERGARIMELLN--RVQKD 114
>gi|47569088|ref|ZP_00239777.1| ribosome-binding factor A [Bacillus cereus G9241]
gi|228986954|ref|ZP_04147080.1| Ribosome-binding factor A [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|229157387|ref|ZP_04285465.1| Ribosome-binding factor A [Bacillus cereus ATCC 4342]
gi|229174477|ref|ZP_04302009.1| Ribosome-binding factor A [Bacillus cereus MM3]
gi|47554250|gb|EAL12612.1| ribosome-binding factor A [Bacillus cereus G9241]
gi|228609037|gb|EEK66327.1| Ribosome-binding factor A [Bacillus cereus MM3]
gi|228626114|gb|EEK82863.1| Ribosome-binding factor A [Bacillus cereus ATCC 4342]
gi|228772732|gb|EEM21172.1| Ribosome-binding factor A [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|324327705|gb|ADY22965.1| ribosome-binding factor A [Bacillus thuringiensis serovar finitimus
YBT-020]
Length = 118
Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats.
Identities = 35/110 (31%), Positives = 62/110 (56%), Gaps = 5/110 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS-PD 69
RA RVGE+++ L +I + +D + +++++V +S DL++ATVYIS+ D +
Sbjct: 4 RANRVGEQMKKELGDIISR-KIKDPRVG--FVTVTDVQVSGDLQIATVYISVLGDEEQKE 60
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ L FIR IG+ +R LR PE+ F +D S+ +++ L+
Sbjct: 61 STLKGLAKAKGFIRSEIGQRIR-LRKTPEISFEFDESIGYGHRIDTLLHQ 109
>gi|261407935|ref|YP_003244176.1| ribosome-binding factor A [Paenibacillus sp. Y412MC10]
gi|329929300|ref|ZP_08283053.1| ribosome-binding factor A [Paenibacillus sp. HGF5]
gi|261284398|gb|ACX66369.1| ribosome-binding factor A [Paenibacillus sp. Y412MC10]
gi|328936669|gb|EGG33112.1| ribosome-binding factor A [Paenibacillus sp. HGF5]
Length = 117
Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats.
Identities = 34/109 (31%), Positives = 57/109 (52%), Gaps = 5/109 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
R RVGE+++ L +I E +D I I+++ V ++ DL A VY+S+ D
Sbjct: 5 RTGRVGEQIKKELSQLI-QTELKDPRIG--FITVTGVDVTNDLSQAKVYLSVLGDDEQKA 61
Query: 71 V-ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ L F+R +G+ +R LR+VPEL F++D S+ + L+
Sbjct: 62 ASLKGLEKASGFLRSELGKRIR-LRHVPELIFKFDDSIAYGSHIEKLLT 109
>gi|126740777|ref|ZP_01756462.1| ribosome-binding factor A [Roseobacter sp. SK209-2-6]
gi|126718073|gb|EBA14790.1| ribosome-binding factor A [Roseobacter sp. SK209-2-6]
Length = 131
Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats.
Identities = 37/130 (28%), Positives = 66/130 (50%), Gaps = 4/130 (3%)
Query: 2 KNKNP---KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATV 58
KN +P S+R LRVGE +R L V++ + D ++R I++ EV ++ DLR+AT
Sbjct: 3 KNSSPEGRGPSQRQLRVGELIRRTLSEVLMRGDLHDPELNRMSITVGEVRVTPDLRIATA 62
Query: 59 YISLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
Y+ + ++ L N +R G+ L +++ P+LRF+ D + A++
Sbjct: 63 YVLPLGGKGQEDLLKLLARNKGELRRIAGKKL-GMKFAPDLRFQLDLTYDQMDATRAMLE 121
Query: 119 LPKIPVALEK 128
+ +EK
Sbjct: 122 QDAVRRDIEK 131
>gi|171769878|sp|A7MQE0|RBFA_ENTS8 RecName: Full=Ribosome-binding factor A
Length = 133
Score = 137 bits (345), Expect = 6e-31, Method: Composition-based stats.
Identities = 39/126 (30%), Positives = 63/126 (50%), Gaps = 7/126 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K R RV +E++ + +IL E +D + + ++S V +S DL A V+++ D
Sbjct: 2 AKEFGRPQRVAQEMQKEIA-IILQREIKDPRVG-LMTTVSGVEVSRDLAYAKVFVTFLND 59
Query: 66 VSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
V I AL FIR +G+++R LR VPEL F YD SL +++ L+ +
Sbjct: 60 KDEAAVKAGIKALQDASGFIRSLLGKAMR-LRIVPELTFFYDNSLVEGMRMSNLVTS-VV 117
Query: 123 PVALEK 128
E+
Sbjct: 118 KHDEER 123
>gi|58040016|ref|YP_191980.1| ribosome-binding factor A [Gluconobacter oxydans 621H]
gi|62510968|sp|Q5FQM2|RBFA_GLUOX RecName: Full=Ribosome-binding factor A
gi|58002430|gb|AAW61324.1| Ribosome-binding factor A [Gluconobacter oxydans 621H]
Length = 142
Score = 137 bits (345), Expect = 6e-31, Method: Composition-based stats.
Identities = 40/120 (33%), Positives = 66/120 (55%), Gaps = 1/120 (0%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
S R LRV EEVR L + EF+D + I+++EV +S D R AT +++
Sbjct: 19 GPSTRQLRVAEEVRRVLAELFARTEFRDPELLDVRITVTEVRISPDFRHATAFVTRLGRS 78
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVAL 126
+ ++ AL F+R + ++L NLR VPE+ F+ DT+L + +L+ +M P++ L
Sbjct: 79 DVEVLLPALKRVAPFLRTGLSKAL-NLRTVPEIHFQPDTALDNAMELDEIMRSPEVQRDL 137
>gi|260596203|ref|YP_003208774.1| ribosome-binding factor A [Cronobacter turicensis z3032]
gi|260215380|emb|CBA27405.1| Ribosome-binding factor A [Cronobacter turicensis z3032]
Length = 133
Score = 137 bits (345), Expect = 7e-31, Method: Composition-based stats.
Identities = 39/126 (30%), Positives = 63/126 (50%), Gaps = 7/126 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K R RV +E++ + +IL E +D + + ++S V +S DL A V+++ D
Sbjct: 2 AKEFGRPQRVAQEMQKEIA-IILQREIKDPRVG-LMTTVSGVEVSRDLAYAKVFVTFLND 59
Query: 66 VSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
V I AL FIR +G+++R LR VPEL F YD SL +++ L+ +
Sbjct: 60 KDDAAVKAGIKALQDASGFIRSLLGKAMR-LRIVPELTFFYDNSLVEGMRMSNLVTS-VV 117
Query: 123 PVALEK 128
E+
Sbjct: 118 KHDEER 123
>gi|329295927|ref|ZP_08253263.1| ribosome-binding factor A [Plautia stali symbiont]
Length = 135
Score = 137 bits (345), Expect = 7e-31, Method: Composition-based stats.
Identities = 38/126 (30%), Positives = 65/126 (51%), Gaps = 7/126 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K R RV +E++ + +IL E +D + ++++S V +S DL A V+++ D
Sbjct: 2 AKEFGRPQRVAQELQKEIA-IILQREIKDPRLG-MMVTVSGVEVSRDLAYAKVFVTFLND 59
Query: 66 VSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
+ V + AL +IR +G+++R LR VPEL F YD SL +++ L+ I
Sbjct: 60 QDEEAVKNGLKALKEASGYIRILLGKAMR-LRIVPELTFFYDNSLIEGMRMSNLVSD-VI 117
Query: 123 PVALEK 128
E+
Sbjct: 118 RNDAER 123
>gi|328545916|ref|YP_004306025.1| ribosome-binding factor A [polymorphum gilvum SL003B-26A1]
gi|326415656|gb|ADZ72719.1| Ribosome-binding factor A [Polymorphum gilvum SL003B-26A1]
Length = 117
Score = 137 bits (345), Expect = 7e-31, Method: Composition-based stats.
Identities = 37/114 (32%), Positives = 63/114 (55%), Gaps = 1/114 (0%)
Query: 14 RVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVIS 73
RVGE VR L ++ + D + +I++ EV M+ DLR+A+ + +R++
Sbjct: 2 RVGELVRKELSDILTRGQLADPDLDGVIITVPEVRMTPDLRLASCLVMPLGGAHGERIVK 61
Query: 74 ALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALE 127
ALN + K+IRG++ R L L+Y+P+LRF DT ++ L+ P + +E
Sbjct: 62 ALNRSAKYIRGQVSRRL-TLKYMPDLRFVLDTRFDDDDRIGHLLHSPDVQRDIE 114
>gi|167635838|ref|ZP_02394147.1| ribosome-binding factor A [Bacillus anthracis str. A0442]
gi|170687860|ref|ZP_02879074.1| ribosome-binding factor A [Bacillus anthracis str. A0465]
gi|218904938|ref|YP_002452772.1| ribosome-binding factor A [Bacillus cereus AH820]
gi|228916448|ref|ZP_04080014.1| Ribosome-binding factor A [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|228928859|ref|ZP_04091891.1| Ribosome-binding factor A [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228935125|ref|ZP_04097952.1| Ribosome-binding factor A [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228947530|ref|ZP_04109820.1| Ribosome-binding factor A [Bacillus thuringiensis serovar monterrey
BGSC 4AJ1]
gi|229123324|ref|ZP_04252528.1| Ribosome-binding factor A [Bacillus cereus 95/8201]
gi|254683482|ref|ZP_05147342.1| ribosome-binding factor A [Bacillus anthracis str. CNEVA-9066]
gi|254722003|ref|ZP_05183792.1| ribosome-binding factor A [Bacillus anthracis str. A1055]
gi|254739625|ref|ZP_05197319.1| ribosome-binding factor A [Bacillus anthracis str. Kruger B]
gi|226736635|sp|B7JJ88|RBFA_BACC0 RecName: Full=Ribosome-binding factor A
gi|167528795|gb|EDR91553.1| ribosome-binding factor A [Bacillus anthracis str. A0442]
gi|170668176|gb|EDT18925.1| ribosome-binding factor A [Bacillus anthracis str. A0465]
gi|218535717|gb|ACK88115.1| ribosome-binding factor A [Bacillus cereus AH820]
gi|228660100|gb|EEL15736.1| Ribosome-binding factor A [Bacillus cereus 95/8201]
gi|228812050|gb|EEM58381.1| Ribosome-binding factor A [Bacillus thuringiensis serovar monterrey
BGSC 4AJ1]
gi|228824490|gb|EEM70295.1| Ribosome-binding factor A [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228830666|gb|EEM76271.1| Ribosome-binding factor A [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228843027|gb|EEM88109.1| Ribosome-binding factor A [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
Length = 118
Score = 137 bits (345), Expect = 7e-31, Method: Composition-based stats.
Identities = 35/109 (32%), Positives = 62/109 (56%), Gaps = 5/109 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS-PD 69
RA RVGE+++ L +I + +D + +++++V +S DL++ATVYIS+ D +
Sbjct: 4 RANRVGEQMKKELGDIISR-KIKDPRVG--FVTVTDVQVSGDLQIATVYISVLGDEEQKE 60
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ L FIR IG+ +R LR PE+ F +D S+ +++ L+
Sbjct: 61 NTLKGLAKAKGFIRSEIGQRIR-LRKTPEISFEFDESIGYGHRIDTLLH 108
>gi|161551797|ref|YP_147118.2| ribosome-binding factor A [Geobacillus kaustophilus HTA426]
gi|61214671|sp|Q5L0I6|RBFA_GEOKA RecName: Full=Ribosome-binding factor A
Length = 127
Score = 137 bits (345), Expect = 7e-31, Method: Composition-based stats.
Identities = 34/110 (30%), Positives = 59/110 (53%), Gaps = 5/110 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP-D 69
RA RVGE+++ L +I +D I +++++V ++ DL+ A VYIS+ D +
Sbjct: 4 RATRVGEQMKKELSDIISRR-LKDPRIG--FVTVTDVRVTGDLQQAKVYISVLGDDKQRE 60
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ AL FIR IG+ +R LR PE+ F D +++ ++ L+
Sbjct: 61 NTLKALEKAKGFIRSEIGQRIR-LRKTPEIFFEIDETMEYGSRIEQLIRQ 109
>gi|228992539|ref|ZP_04152466.1| Ribosome-binding factor A [Bacillus pseudomycoides DSM 12442]
gi|228767173|gb|EEM15809.1| Ribosome-binding factor A [Bacillus pseudomycoides DSM 12442]
Length = 117
Score = 137 bits (345), Expect = 8e-31, Method: Composition-based stats.
Identities = 35/109 (32%), Positives = 61/109 (55%), Gaps = 5/109 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV-SPD 69
RA RVGE+++ L +I + +D I +++++V +S DL++A VYIS+ D +
Sbjct: 4 RANRVGEQMKKELGEIISR-KIKDPRIG--FVTVTDVQVSGDLQIAKVYISVLGDEQQKE 60
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ L FIR IG+ +R LR PE+ F +D S+ +++ L+
Sbjct: 61 NTLKGLAKAKGFIRAEIGQRIR-LRKTPEITFEFDESIAYGHRIDTLLH 108
>gi|326388035|ref|ZP_08209639.1| ribosome-binding factor A [Novosphingobium nitrogenifigens DSM
19370]
gi|326207536|gb|EGD58349.1| ribosome-binding factor A [Novosphingobium nitrogenifigens DSM
19370]
Length = 133
Score = 137 bits (345), Expect = 8e-31, Method: Composition-based stats.
Identities = 39/119 (32%), Positives = 65/119 (54%), Gaps = 1/119 (0%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
S R L+VGE+VR L ++ + D ++S +S++EV MS DLR A V++ L
Sbjct: 12 SVRLLKVGEQVRHILSELLSRQQVHDDVLSAHTVSVTEVRMSPDLRHAAVFVKSLLGADE 71
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALE 127
+ V+ AL N F + + L+ L+Y ++RF D S +++AL+ P++ LE
Sbjct: 72 EIVLKALRTNTAFFQKEVAGRLK-LKYAAKIRFLPDESFDEANRIDALLADPRVLRDLE 129
>gi|229086363|ref|ZP_04218540.1| Ribosome-binding factor A [Bacillus cereus Rock3-44]
gi|228696975|gb|EEL49783.1| Ribosome-binding factor A [Bacillus cereus Rock3-44]
Length = 118
Score = 137 bits (345), Expect = 8e-31, Method: Composition-based stats.
Identities = 35/109 (32%), Positives = 61/109 (55%), Gaps = 5/109 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS-PD 69
RA RVGE+++ L +I + +D I +++++V +S DL++A VYIS+ D +
Sbjct: 4 RANRVGEQMKKELGDIISR-KIKDPRIG--FVTVTDVQVSGDLQIAKVYISVLGDEEQKE 60
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ L FIR IG+ +R LR PE+ F +D S+ +++ L+
Sbjct: 61 NTLKGLAKAKGFIRAEIGQRIR-LRKTPEITFEFDESIAYGHRIDTLLH 108
>gi|172046045|sp|A4WWP6|RBFA_RHOS5 RecName: Full=Ribosome-binding factor A
Length = 140
Score = 136 bits (344), Expect = 8e-31, Method: Composition-based stats.
Identities = 37/123 (30%), Positives = 59/123 (47%), Gaps = 1/123 (0%)
Query: 4 KNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP 63
S+R LRVGE +R L V+ E D ++R I++ EV S DL+VATV++
Sbjct: 10 TGTGPSQRQLRVGELIRRTLADVLNRGEIHDPDLNRMSITVGEVRCSPDLKVATVHVMPL 69
Query: 64 LDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIP 123
+ I+ L+ + +R I R + L+Y P+LRFR D + + L +
Sbjct: 70 GGKDVEEAIALLSKHRGELRHHITRQM-TLKYAPDLRFRPDETFDRLDETRRLFSDETVQ 128
Query: 124 VAL 126
+
Sbjct: 129 RDI 131
>gi|149185841|ref|ZP_01864156.1| ribosome-binding factor A [Erythrobacter sp. SD-21]
gi|148830402|gb|EDL48838.1| ribosome-binding factor A [Erythrobacter sp. SD-21]
Length = 133
Score = 136 bits (344), Expect = 8e-31, Method: Composition-based stats.
Identities = 36/128 (28%), Positives = 64/128 (50%), Gaps = 1/128 (0%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
++ + S R L+VGE VR L ++ E D ++ I+++EV M+ DLR A Y+
Sbjct: 5 QQSTPEQLSVRVLKVGERVRHILSELLARGEAHDDVLRAHNIAVTEVRMTPDLRNAKAYV 64
Query: 61 SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
L V+ AL N F + + + L L++ P+L F+ D S ++ L+ P
Sbjct: 65 KPLLGKDEAEVLKALRTNTAFFQKEVAQRL-GLKFAPKLSFKPDESFDEAGRIERLLDDP 123
Query: 121 KIPVALEK 128
++ L++
Sbjct: 124 RVARDLDE 131
>gi|86139376|ref|ZP_01057945.1| ribosome-binding factor A [Roseobacter sp. MED193]
gi|85823879|gb|EAQ44085.1| ribosome-binding factor A [Roseobacter sp. MED193]
Length = 131
Score = 136 bits (344), Expect = 9e-31, Method: Composition-based stats.
Identities = 39/129 (30%), Positives = 65/129 (50%), Gaps = 4/129 (3%)
Query: 2 KNKNPK---NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATV 58
KNK+P+ S+R LRVGE +R L V+ E D ++R I++ EV ++ DLR+AT
Sbjct: 3 KNKSPEGRAPSQRQLRVGELIRRTLSEVLSRGELHDPELNRMSITVGEVRVTPDLRIATA 62
Query: 59 YISLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
Y+ D ++ L N +R G+ L ++Y P+LRF+ D + ++
Sbjct: 63 YVLPLGGKGQDDLLKLLGRNKWELRTLAGKKL-GMKYTPDLRFQLDLTYDQMDATRRMLE 121
Query: 119 LPKIPVALE 127
+ +E
Sbjct: 122 QDAVRRDIE 130
>gi|271499175|ref|YP_003332200.1| ribosome-binding factor A [Dickeya dadantii Ech586]
gi|270342730|gb|ACZ75495.1| ribosome-binding factor A [Dickeya dadantii Ech586]
Length = 133
Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats.
Identities = 38/126 (30%), Positives = 66/126 (52%), Gaps = 8/126 (6%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K R RV +E++ + +I+ E +D + + ++S V +S DL A V+++ D
Sbjct: 2 AKEFSRTQRVAQEMQKEIA-IIIQREVKDPRVG--MATVSGVEVSRDLAYAKVFVTFLND 58
Query: 66 VSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
P++V + AL FIR +G+++R LR VPEL F YD SL +++ L+ +
Sbjct: 59 NEPEQVKAGVKALQDASGFIRMLLGKAMR-LRVVPELTFSYDNSLVEGMRMSNLVTR-VV 116
Query: 123 PVALEK 128
E+
Sbjct: 117 KRDAER 122
>gi|229031441|ref|ZP_04187441.1| Ribosome-binding factor A [Bacillus cereus AH1271]
gi|228729730|gb|EEL80710.1| Ribosome-binding factor A [Bacillus cereus AH1271]
Length = 118
Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats.
Identities = 35/110 (31%), Positives = 62/110 (56%), Gaps = 5/110 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS-PD 69
RA RVGE+++ L +I + +D + +++++V +S DL++ATVYIS+ D +
Sbjct: 4 RANRVGEQMKKELGDIISR-KIKDPRVG--FVTVTDVQVSGDLQIATVYISVLGDEEQKE 60
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ L FIR IG+ +R LR PE+ F +D S+ +++ L+
Sbjct: 61 STLKGLAKAKGFIRSEIGQRIR-LRKTPEISFEFDESIGYGHRIDTLLHQ 109
>gi|146313239|ref|YP_001178313.1| ribosome-binding factor A [Enterobacter sp. 638]
gi|166918676|sp|A4WEY2|RBFA_ENT38 RecName: Full=Ribosome-binding factor A
gi|145320115|gb|ABP62262.1| ribosome-binding factor A [Enterobacter sp. 638]
Length = 133
Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats.
Identities = 40/126 (31%), Positives = 63/126 (50%), Gaps = 7/126 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K R RV +E++ + +IL E +D + + ++S V MS DL A V+++ D
Sbjct: 2 AKEFGRPQRVAQEMQKEIA-LILQREIKDPRVG-MMTTVSGVEMSRDLAYAKVFVTFLND 59
Query: 66 VSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
V I AL FIR +G+++R LR VPEL F YD SL +++ L+ +
Sbjct: 60 QDEAAVKNGIKALQEASGFIRSLLGKAMR-LRIVPELTFFYDNSLVEGMRMSNLVTT-VV 117
Query: 123 PVALEK 128
E+
Sbjct: 118 KHDDER 123
>gi|295399855|ref|ZP_06809836.1| ribosome-binding factor A [Geobacillus thermoglucosidasius
C56-YS93]
gi|312111633|ref|YP_003989949.1| ribosome-binding factor A [Geobacillus sp. Y4.1MC1]
gi|294978258|gb|EFG53855.1| ribosome-binding factor A [Geobacillus thermoglucosidasius
C56-YS93]
gi|311216734|gb|ADP75338.1| ribosome-binding factor A [Geobacillus sp. Y4.1MC1]
Length = 126
Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats.
Identities = 34/110 (30%), Positives = 58/110 (52%), Gaps = 5/110 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP-D 69
RA RVGE+++ L +I + +D I +++++V ++ DL+ A VYIS+ D
Sbjct: 4 RATRVGEQMKKELSDIIGR-KLKDPRIG--FVTVTDVRVTGDLQQAKVYISIFGDEEQRQ 60
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ L FIR IG+ +R LR PE+ F D S++ ++ L+
Sbjct: 61 NTLKGLEKAKGFIRSEIGQRIR-LRKTPEIFFEIDESIEYGTRIEQLIRQ 109
>gi|154686082|ref|YP_001421243.1| ribosome-binding factor A [Bacillus amyloliquefaciens FZB42]
gi|308173628|ref|YP_003920333.1| ribosome-binding factor A [Bacillus amyloliquefaciens DSM 7]
gi|154351933|gb|ABS74012.1| RbfA [Bacillus amyloliquefaciens FZB42]
gi|307606492|emb|CBI42863.1| ribosome-binding factor A [Bacillus amyloliquefaciens DSM 7]
gi|328911769|gb|AEB63365.1| Ribosome-binding factor A [Bacillus amyloliquefaciens LL3]
Length = 115
Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats.
Identities = 35/112 (31%), Positives = 59/112 (52%), Gaps = 5/112 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV-SPD 69
RA RVGE+++ L +I + +D I +++++V +S DL++A VYIS+ +
Sbjct: 2 RANRVGEQMKKELGDIISR-KLKDPRIG--FLTVTDVRVSGDLQIAKVYISVLGGEKKKE 58
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+ L FIR IG +R LR PEL F +D S++ ++ L+
Sbjct: 59 EALKGLEKAKGFIRSEIGSRIR-LRKTPELEFEFDESIEYGNRIETLIHELH 109
>gi|42782899|ref|NP_980146.1| ribosome-binding factor A [Bacillus cereus ATCC 10987]
gi|222097255|ref|YP_002531312.1| ribosome-binding factor a [Bacillus cereus Q1]
gi|229019005|ref|ZP_04175847.1| Ribosome-binding factor A [Bacillus cereus AH1273]
gi|229025250|ref|ZP_04181672.1| Ribosome-binding factor A [Bacillus cereus AH1272]
gi|229162747|ref|ZP_04290704.1| Ribosome-binding factor A [Bacillus cereus R309803]
gi|229197921|ref|ZP_04324637.1| Ribosome-binding factor A [Bacillus cereus m1293]
gi|61215104|sp|Q732R1|RBFA_BACC1 RecName: Full=Ribosome-binding factor A
gi|254789733|sp|B9IV99|RBFA_BACCQ RecName: Full=Ribosome-binding factor A
gi|42738826|gb|AAS42754.1| ribosome-binding factor A [Bacillus cereus ATCC 10987]
gi|221241313|gb|ACM14023.1| ribosome-binding factor A [Bacillus cereus Q1]
gi|228585639|gb|EEK43741.1| Ribosome-binding factor A [Bacillus cereus m1293]
gi|228620629|gb|EEK77498.1| Ribosome-binding factor A [Bacillus cereus R309803]
gi|228736078|gb|EEL86651.1| Ribosome-binding factor A [Bacillus cereus AH1272]
gi|228742333|gb|EEL92491.1| Ribosome-binding factor A [Bacillus cereus AH1273]
Length = 118
Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats.
Identities = 35/109 (32%), Positives = 62/109 (56%), Gaps = 5/109 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS-PD 69
RA RVGE+++ L +I + +D + +++++V +S DL++ATVYIS+ D +
Sbjct: 4 RANRVGEQMKKELGDIISR-KIKDPRVG--FVTVTDVQVSGDLQIATVYISVLGDEEQKE 60
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ L FIR IG+ +R LR PE+ F +D S+ +++ L+
Sbjct: 61 STLKGLAKAKGFIRSEIGQRIR-LRKTPEISFEFDESIGYGHRIDTLLH 108
>gi|315648093|ref|ZP_07901194.1| ribosome-binding factor A [Paenibacillus vortex V453]
gi|315276739|gb|EFU40082.1| ribosome-binding factor A [Paenibacillus vortex V453]
Length = 117
Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats.
Identities = 33/109 (30%), Positives = 57/109 (52%), Gaps = 5/109 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
R RVGE+++ L +I E +D I I+++ V ++ DL A +Y+S+ D
Sbjct: 5 RTGRVGEQIKKELSQLI-QTEMKDPRIG--FITVTGVDVTNDLSQAKIYLSVLGDDEQKA 61
Query: 71 V-ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ L F+R +G+ +R LR+VPEL F++D S+ + L+
Sbjct: 62 ASLKGLEKASGFLRSELGKRIR-LRHVPELIFKFDDSIAYGSHIEKLLT 109
>gi|239826659|ref|YP_002949283.1| ribosome-binding factor A [Geobacillus sp. WCH70]
gi|259552007|sp|C5D9D1|RBFA_GEOSW RecName: Full=Ribosome-binding factor A
gi|239806952|gb|ACS24017.1| ribosome-binding factor A [Geobacillus sp. WCH70]
Length = 126
Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats.
Identities = 34/110 (30%), Positives = 58/110 (52%), Gaps = 5/110 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP-D 69
RA RVGE+++ L +I + +D I +++++V ++ DL+ A VYIS+ D
Sbjct: 4 RATRVGEQMKKELSDIIGR-KLKDPRIG--FVTVTDVRVTGDLQQAKVYISVLGDEEQRQ 60
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ L FIR IG+ +R LR PE+ F D S++ ++ L+
Sbjct: 61 NTLKGLEKAKGFIRSEIGQRIR-LRKTPEIFFEIDESIEYGNRIEQLIRQ 109
>gi|206978440|ref|ZP_03239307.1| ribosome-binding factor A [Bacillus cereus H3081.97]
gi|217961231|ref|YP_002339799.1| ribosome-binding factor A [Bacillus cereus AH187]
gi|229140452|ref|ZP_04269007.1| Ribosome-binding factor A [Bacillus cereus BDRD-ST26]
gi|226736638|sp|B7HLE4|RBFA_BACC7 RecName: Full=Ribosome-binding factor A
gi|206743355|gb|EDZ54795.1| ribosome-binding factor A [Bacillus cereus H3081.97]
gi|217067043|gb|ACJ81293.1| ribosome-binding factor A [Bacillus cereus AH187]
gi|228643013|gb|EEK99289.1| Ribosome-binding factor A [Bacillus cereus BDRD-ST26]
Length = 118
Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats.
Identities = 36/109 (33%), Positives = 62/109 (56%), Gaps = 5/109 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS-PD 69
RA RVGE+++ L +I + +D + +++++V +S DL++ATVYIS+ D D
Sbjct: 4 RANRVGEQMKKELGDIISR-KIKDPRVG--FVTVTDVQVSGDLQIATVYISVLGDEEQKD 60
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ L FIR IG+ +R LR PE+ F +D S+ +++ L+
Sbjct: 61 STLKGLAKAKGFIRSEIGQRIR-LRKTPEISFEFDESIGYGHRIDTLLH 108
>gi|30263814|ref|NP_846191.1| ribosome-binding factor A [Bacillus anthracis str. Ames]
gi|47529238|ref|YP_020587.1| ribosome-binding factor A [Bacillus anthracis str. 'Ames Ancestor']
gi|49186661|ref|YP_029913.1| ribosome-binding factor A [Bacillus anthracis str. Sterne]
gi|65321138|ref|ZP_00394097.1| COG0858: Ribosome-binding factor A [Bacillus anthracis str. A2012]
gi|165872633|ref|ZP_02217264.1| ribosome-binding factor A [Bacillus anthracis str. A0488]
gi|167639837|ref|ZP_02398106.1| ribosome-binding factor A [Bacillus anthracis str. A0193]
gi|170706868|ref|ZP_02897326.1| ribosome-binding factor A [Bacillus anthracis str. A0389]
gi|177652087|ref|ZP_02934633.1| ribosome-binding factor A [Bacillus anthracis str. A0174]
gi|190568437|ref|ZP_03021344.1| ribosome-binding factor A [Bacillus anthracis Tsiankovskii-I]
gi|227813281|ref|YP_002813290.1| ribosome-binding factor A [Bacillus anthracis str. CDC 684]
gi|229600478|ref|YP_002868049.1| ribosome-binding factor A [Bacillus anthracis str. A0248]
gi|254735849|ref|ZP_05193555.1| ribosome-binding factor A [Bacillus anthracis str. Western North
America USA6153]
gi|254756002|ref|ZP_05208033.1| ribosome-binding factor A [Bacillus anthracis str. Vollum]
gi|254759337|ref|ZP_05211362.1| ribosome-binding factor A [Bacillus anthracis str. Australia 94]
gi|33301489|sp|Q81WM5|RBFA_BACAN RecName: Full=Ribosome-binding factor A
gi|254789730|sp|C3P5L3|RBFA_BACAA RecName: Full=Ribosome-binding factor A
gi|254789731|sp|C3L7B6|RBFA_BACAC RecName: Full=Ribosome-binding factor A
gi|30258458|gb|AAP27677.1| ribosome-binding factor A [Bacillus anthracis str. Ames]
gi|47504386|gb|AAT33062.1| ribosome-binding factor A [Bacillus anthracis str. 'Ames Ancestor']
gi|49180588|gb|AAT55964.1| ribosome-binding factor A [Bacillus anthracis str. Sterne]
gi|164711665|gb|EDR17211.1| ribosome-binding factor A [Bacillus anthracis str. A0488]
gi|167512238|gb|EDR87615.1| ribosome-binding factor A [Bacillus anthracis str. A0193]
gi|170128286|gb|EDS97155.1| ribosome-binding factor A [Bacillus anthracis str. A0389]
gi|172082456|gb|EDT67521.1| ribosome-binding factor A [Bacillus anthracis str. A0174]
gi|190560441|gb|EDV14419.1| ribosome-binding factor A [Bacillus anthracis Tsiankovskii-I]
gi|227007093|gb|ACP16836.1| ribosome-binding factor A [Bacillus anthracis str. CDC 684]
gi|229264886|gb|ACQ46523.1| ribosome-binding factor A [Bacillus anthracis str. A0248]
Length = 118
Score = 135 bits (342), Expect = 1e-30, Method: Composition-based stats.
Identities = 35/109 (32%), Positives = 62/109 (56%), Gaps = 5/109 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS-PD 69
RA RVGE+++ L +I + +D + +++++V +S DL++ATVYIS+ D +
Sbjct: 4 RANRVGEQMKKELGDIISR-KIKDPRVG--FVTVTDVQVSRDLQIATVYISVLGDEEQKE 60
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ L FIR IG+ +R LR PE+ F +D S+ +++ L+
Sbjct: 61 NTLKGLAKAKGFIRSEIGQRIR-LRKTPEISFEFDESIGYGHRIDTLLH 108
>gi|310817250|ref|YP_003965214.1| ribosome-binding factor A [Ketogulonicigenium vulgare Y25]
gi|308755985|gb|ADO43914.1| ribosome-binding factor A [Ketogulonicigenium vulgare Y25]
Length = 145
Score = 135 bits (342), Expect = 1e-30, Method: Composition-based stats.
Identities = 40/117 (34%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
S+R LRVGE +R L V+ E D + R I++ EV S DL+VAT Y+
Sbjct: 14 GPSQRQLRVGELIRRTLSSVLQRGEVHDPELQRTSITVGEVRTSPDLKVATAYVLPLGGG 73
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIP 123
+ D V++AL N IR IG + L++VP+LRF D + + L +
Sbjct: 74 NADLVLAALRRNKSEIRHMIGHGM-TLKFVPDLRFEIDRTFDRMDETRRLFENDHVR 129
>gi|296330880|ref|ZP_06873355.1| ribosome-binding factor A [Bacillus subtilis subsp. spizizenii ATCC
6633]
gi|305674398|ref|YP_003866070.1| ribosome-binding factor A [Bacillus subtilis subsp. spizizenii str.
W23]
gi|296151885|gb|EFG92759.1| ribosome-binding factor A [Bacillus subtilis subsp. spizizenii ATCC
6633]
gi|305412642|gb|ADM37761.1| ribosome-binding factor A [Bacillus subtilis subsp. spizizenii str.
W23]
Length = 117
Score = 135 bits (342), Expect = 1e-30, Method: Composition-based stats.
Identities = 36/114 (31%), Positives = 60/114 (52%), Gaps = 5/114 (4%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
S RA RVGE+++ L +I + +D I +++++V +S DL++A VYIS+ D
Sbjct: 2 SMRANRVGEQMKKELGDIISR-KLKDPRIG--FLTVTDVRVSGDLQIAKVYISVLGDEKK 58
Query: 69 -DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+ + L FIR IG +R LR PE+ F +D S+ ++ L+
Sbjct: 59 REEALKGLEKAKGFIRSEIGSRIR-LRKTPEIEFEFDESIDYGNRIETLIHEIH 111
>gi|255261891|ref|ZP_05341233.1| ribosome-binding factor A [Thalassiobium sp. R2A62]
gi|255104226|gb|EET46900.1| ribosome-binding factor A [Thalassiobium sp. R2A62]
Length = 136
Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats.
Identities = 36/128 (28%), Positives = 62/128 (48%), Gaps = 4/128 (3%)
Query: 2 KNKNPK---NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATV 58
KN +P+ S R LRVGE +R L + + D ++R I++ EV ++ DL++AT
Sbjct: 3 KNSSPEGRAPSTRQLRVGELIRRTLSDALQRGDIHDPDLNRMSITVGEVRVTPDLQIATC 62
Query: 59 YISLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
++ D I+AL N +R +G+ + L+ P+LRF D + A+
Sbjct: 63 FVLPLGGKGGDEAIAALKRNKYELRRLVGK-VTKLKMTPDLRFLIDKTYDQMDATAAMFA 121
Query: 119 LPKIPVAL 126
++ L
Sbjct: 122 DARVQADL 129
>gi|188532505|ref|YP_001906302.1| ribosome-binding factor A [Erwinia tasmaniensis Et1/99]
gi|238689698|sp|B2VGN3|RBFA_ERWT9 RecName: Full=Ribosome-binding factor A
gi|188027547|emb|CAO95394.1| Ribosome-binding factor A [Erwinia tasmaniensis Et1/99]
Length = 137
Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats.
Identities = 36/126 (28%), Positives = 64/126 (50%), Gaps = 7/126 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K R RV +E++ + +IL E +D + ++++S V +S DL A V+++ D
Sbjct: 2 AKEFGRPQRVSQELQKEIA-IILQREIKDPRLG-MMVTVSGVDVSRDLAYAKVFVTFLND 59
Query: 66 VSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
+ + AL +IR +G+++R LR VPEL F YD SL +++ L+ +
Sbjct: 60 KDEAAIKGGLRALGDASGYIRTLLGKAMR-LRIVPELTFFYDNSLVEGMRMSNLVTN-VV 117
Query: 123 PVALEK 128
E+
Sbjct: 118 RNDEER 123
>gi|16078728|ref|NP_389547.1| ribosome-binding factor A [Bacillus subtilis subsp. subtilis str.
168]
gi|221309543|ref|ZP_03591390.1| ribosome-binding factor A [Bacillus subtilis subsp. subtilis str.
168]
gi|221313867|ref|ZP_03595672.1| ribosome-binding factor A [Bacillus subtilis subsp. subtilis str.
NCIB 3610]
gi|221318790|ref|ZP_03600084.1| ribosome-binding factor A [Bacillus subtilis subsp. subtilis str.
JH642]
gi|221323062|ref|ZP_03604356.1| ribosome-binding factor A [Bacillus subtilis subsp. subtilis str.
SMY]
gi|321315432|ref|YP_004207719.1| ribosome-binding factor A [Bacillus subtilis BSn5]
gi|418464|sp|P32731|RBFA_BACSU RecName: Full=Ribosome-binding factor A
gi|580902|emb|CAA79236.1| ORF6 [Bacillus subtilis subsp. subtilis str. 168]
gi|2634037|emb|CAB13538.1| ribosome-binding factor A [Bacillus subtilis subsp. subtilis str.
168]
gi|320021706|gb|ADV96692.1| ribosome-binding factor A [Bacillus subtilis BSn5]
Length = 117
Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats.
Identities = 36/114 (31%), Positives = 60/114 (52%), Gaps = 5/114 (4%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
S RA RVGE+++ L +I + +D I +++++V +S DL++A VYIS+ D
Sbjct: 2 SMRANRVGEQMKKELGDIISR-KLKDPRIG--FLTVTDVRVSGDLQIAKVYISVLGDEKK 58
Query: 69 -DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+ + L FIR IG +R LR PE+ F +D S+ ++ L+
Sbjct: 59 REEALKGLAKAKGFIRSEIGSRIR-LRKTPEIEFEFDESIDYGNRIETLIHELH 111
>gi|89067209|ref|ZP_01154722.1| ribosome-binding factor A [Oceanicola granulosus HTCC2516]
gi|89046778|gb|EAR52832.1| ribosome-binding factor A [Oceanicola granulosus HTCC2516]
Length = 143
Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats.
Identities = 34/125 (27%), Positives = 62/125 (49%), Gaps = 1/125 (0%)
Query: 3 NKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL 62
++ S+R LRVGE +R L V+ + D ++ I++SEV + DL++AT Y+
Sbjct: 10 DEGRGPSQRQLRVGELIRRTLSDVLARGDVHDPDLTGMSITVSEVQTTPDLKIATAYVLP 69
Query: 63 PLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
+ + AL N +R + ++L L++ P+LRFR D + + P++
Sbjct: 70 LGGRDVEVALKALARNKGELRRAVSKNL-TLKFAPDLRFRVDETFDRIDDTRRMFNEPRV 128
Query: 123 PVALE 127
+E
Sbjct: 129 RQDIE 133
>gi|300718576|ref|YP_003743379.1| ribosome-binding factor A [Erwinia billingiae Eb661]
gi|299064412|emb|CAX61532.1| Ribosome-binding factor A [Erwinia billingiae Eb661]
Length = 138
Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats.
Identities = 38/126 (30%), Positives = 66/126 (52%), Gaps = 7/126 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K R RV +E++ + VIL E +D + ++++S V +S DL A V+++ D
Sbjct: 2 AKEFGRPQRVSQELQKEIA-VILQREIKDPRLG-MMVTVSGVDLSRDLAYAKVFVTFLND 59
Query: 66 VSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
D + + AL +IR +G+++R LR VPEL F YD SL +++ L+ +
Sbjct: 60 KDEDAIKGGLRALGDASGYIRSLLGKAMR-LRIVPELTFFYDNSLVEGMRMSNLVTN-VV 117
Query: 123 PVALEK 128
+E+
Sbjct: 118 RNDVER 123
>gi|84515137|ref|ZP_01002500.1| ribosome-binding factor A [Loktanella vestfoldensis SKA53]
gi|84511296|gb|EAQ07750.1| ribosome-binding factor A [Loktanella vestfoldensis SKA53]
Length = 134
Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats.
Identities = 35/127 (27%), Positives = 63/127 (49%), Gaps = 1/127 (0%)
Query: 2 KNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS 61
+ ++R LRVGE +R L ++ E D ++R I++ EV MS DLR+AT +I
Sbjct: 9 QRDGKAPTQRMLRVGEMIRRTLSEILQRGEVHDPDLARMSITVGEVRMSPDLRIATAFIL 68
Query: 62 LPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+ + + AL N +R + + ++++ PELRF+ D + AL+
Sbjct: 69 PLGGIGKEEALDALRRNRHEVRHLVVKG-GSMKFAPELRFQLDGTFDQMDATRALLAEDH 127
Query: 122 IPVALEK 128
+ L++
Sbjct: 128 VRQDLDE 134
>gi|50119660|ref|YP_048827.1| ribosome-binding factor A [Pectobacterium atrosepticum SCRI1043]
gi|261820129|ref|YP_003258235.1| ribosome-binding factor A [Pectobacterium wasabiae WPP163]
gi|61214938|sp|Q6D9A4|RBFA_ERWCT RecName: Full=Ribosome-binding factor A
gi|49610186|emb|CAG73628.1| ribosome-binding factor A [Pectobacterium atrosepticum SCRI1043]
gi|261604142|gb|ACX86628.1| ribosome-binding factor A [Pectobacterium wasabiae WPP163]
Length = 132
Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats.
Identities = 40/126 (31%), Positives = 66/126 (52%), Gaps = 8/126 (6%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K R RV +E++ + +I+ E +D I + ++S V +S DL A V+++ D
Sbjct: 2 AKEFSRTQRVAQEMQKEIA-IIIQREVKDPRIG--MATVSGVEVSRDLAYAKVFVTFLND 58
Query: 66 VSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
P++V + AL FIR IG+++R LR VPEL F YD SL +++ L+ +
Sbjct: 59 NEPEQVKIAVKALQDASGFIRMMIGKAMR-LRVVPELTFSYDNSLVEGMRMSNLVTN-VV 116
Query: 123 PVALEK 128
E+
Sbjct: 117 RNDTER 122
>gi|154254060|ref|YP_001414884.1| ribosome-binding factor A [Parvibaculum lavamentivorans DS-1]
gi|171769695|sp|A7HZ94|RBFA_PARL1 RecName: Full=Ribosome-binding factor A
gi|154158010|gb|ABS65227.1| ribosome-binding factor A [Parvibaculum lavamentivorans DS-1]
Length = 140
Score = 135 bits (342), Expect = 2e-30, Method: Composition-based stats.
Identities = 36/120 (30%), Positives = 62/120 (51%), Gaps = 1/120 (0%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
S+R LR GE +R AL V+ QD + S++EV +S DLR AT +++
Sbjct: 15 GPSQRQLRAGELIRRALSDVVTRGTIQDPDLIERSFSVTEVRVSPDLRHATCFVAPLGKG 74
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVAL 126
+ +AL ++RG++ + + +Y+P+L F DTS +++ L+ PK+ L
Sbjct: 75 DAAALAAALTRVRGYLRGQLSKEV-TFKYMPDLTFEPDTSFDKAEQIDRLLHSPKVSQDL 133
>gi|251797396|ref|YP_003012127.1| ribosome-binding factor A [Paenibacillus sp. JDR-2]
gi|247545022|gb|ACT02041.1| ribosome-binding factor A [Paenibacillus sp. JDR-2]
Length = 118
Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats.
Identities = 32/108 (29%), Positives = 60/108 (55%), Gaps = 5/108 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-DVSPD 69
R RVGE+++ L +I E +D I I+++ V + DL A VY+S+ + +
Sbjct: 5 RVGRVGEQIKKELSQII-QTELKDPRIG--FITVTGVEATSDLSQARVYLSVLGSEEQKE 61
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ AL ++R +G+ +R LR+ PEL F++D+S++ ++ L+
Sbjct: 62 ETLKALGKANGYLRSELGKRMR-LRHTPELLFKFDSSIEYGSRIEGLL 108
>gi|229098280|ref|ZP_04229227.1| Ribosome-binding factor A [Bacillus cereus Rock3-29]
gi|229104373|ref|ZP_04235042.1| Ribosome-binding factor A [Bacillus cereus Rock3-28]
gi|229117297|ref|ZP_04246675.1| Ribosome-binding factor A [Bacillus cereus Rock1-3]
gi|228666197|gb|EEL21661.1| Ribosome-binding factor A [Bacillus cereus Rock1-3]
gi|228679071|gb|EEL33279.1| Ribosome-binding factor A [Bacillus cereus Rock3-28]
gi|228685178|gb|EEL39109.1| Ribosome-binding factor A [Bacillus cereus Rock3-29]
Length = 118
Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats.
Identities = 34/109 (31%), Positives = 61/109 (55%), Gaps = 5/109 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS-PD 69
RA RVGE+++ L +I + +D + +++++V +S DL++A VYIS+ D +
Sbjct: 4 RANRVGEQMKKELGDIISR-KIKDPRVG--FVTVTDVQVSGDLQIAKVYISVLGDDEQKE 60
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ L FIR IG+ +R LR PE+ F +D S+ +++ L+
Sbjct: 61 STLKGLAKAKGFIRSEIGQRIR-LRKTPEISFEFDESIGYGHRIDTLLH 108
>gi|167464644|ref|ZP_02329733.1| ribosome-binding factor A [Paenibacillus larvae subsp. larvae
BRL-230010]
Length = 118
Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats.
Identities = 36/110 (32%), Positives = 64/110 (58%), Gaps = 5/110 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-DVSPD 69
R RVGE+++ L I+ +E +D I ++I+ V ++ DL +A VY+S+ D +
Sbjct: 5 RVGRVGEQIKKELSQ-IVQSELKDPRIG--FLTITGVDVTNDLSLAKVYLSVLGSDEEKE 61
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ AL +IR +G+ +R LR VPEL+F++DTS+ ++ +L+
Sbjct: 62 ATLKALGVASGYIRSELGKRIR-LRKVPELQFKFDTSIDYGSRIESLLQD 110
>gi|259907043|ref|YP_002647399.1| ribosome-binding factor A [Erwinia pyrifoliae Ep1/96]
gi|224962665|emb|CAX54120.1| Ribosome-binding factor A [Erwinia pyrifoliae Ep1/96]
gi|283476839|emb|CAY72677.1| rbfA [Erwinia pyrifoliae DSM 12163]
gi|310766255|gb|ADP11205.1| ribosome-binding factor A [Erwinia sp. Ejp617]
Length = 137
Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats.
Identities = 36/126 (28%), Positives = 64/126 (50%), Gaps = 7/126 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K R RV +E++ + +IL E +D + ++++S V +S DL A V+++ D
Sbjct: 2 AKEFGRPQRVSQELQKEIA-IILQREIKDPRLG-MMVTVSGVDVSRDLAYAKVFVTFLND 59
Query: 66 VSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
+ + AL +IR +G+++R LR VPEL F YD SL +++ L+ +
Sbjct: 60 KDEAAIKAGLRALGDASGYIRTLLGKAMR-LRIVPELTFFYDNSLVEGMRMSNLVTN-VV 117
Query: 123 PVALEK 128
E+
Sbjct: 118 RNDEER 123
>gi|242240748|ref|YP_002988929.1| ribosome-binding factor A [Dickeya dadantii Ech703]
gi|242132805|gb|ACS87107.1| ribosome-binding factor A [Dickeya dadantii Ech703]
Length = 132
Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats.
Identities = 37/126 (29%), Positives = 66/126 (52%), Gaps = 8/126 (6%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
+ R RV +E++ + +I+ E +D + + ++S V +S DL A V+++ D
Sbjct: 2 AREFSRTQRVAQEMQKEIA-IIIQREIKDPRVG--MATVSSVDVSRDLAYAKVFVTFLND 58
Query: 66 VSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
P+++ I AL FIR +G+++R LR VPEL F YD SL +++ L+ +
Sbjct: 59 NEPEQIKLGIKALQDASGFIRMLLGKAMR-LRIVPELTFAYDNSLVEGMRMSNLVSN-VV 116
Query: 123 PVALEK 128
E+
Sbjct: 117 KRDAER 122
>gi|304404294|ref|ZP_07385956.1| ribosome-binding factor A [Paenibacillus curdlanolyticus YK9]
gi|304347272|gb|EFM13104.1| ribosome-binding factor A [Paenibacillus curdlanolyticus YK9]
Length = 118
Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats.
Identities = 34/110 (30%), Positives = 59/110 (53%), Gaps = 5/110 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-DVSPD 69
R RVGE+++ L +I E +D I I+++ V ++ DL A VY+S+ D +
Sbjct: 5 RVGRVGEQIKKELSQII-QTELKDPRIG--FITVTGVDVTNDLSQAKVYLSVLGSDEQKE 61
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ A+ FIR +G+ +R LR+ P L F++D S+ ++ AL+
Sbjct: 62 ETLKAIARGTGFIRSELGKRMR-LRHTPVLLFKFDASIAYGSRIEALLEQ 110
>gi|254470702|ref|ZP_05084105.1| ribosome-binding factor A [Pseudovibrio sp. JE062]
gi|211959844|gb|EEA95041.1| ribosome-binding factor A [Pseudovibrio sp. JE062]
Length = 146
Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats.
Identities = 38/119 (31%), Positives = 61/119 (51%), Gaps = 1/119 (0%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
+ S+R LRVGE VR L +++ + D + +I++ EV MS DLR A V +
Sbjct: 11 QPSQRQLRVGELVRKELSDILIRGQVSDPDLDGVIITVPEVRMSPDLRWADVLVMPMGGR 70
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
+ V+ AL N K++RG++ R + ++Y +LRF DT + L+ P I
Sbjct: 71 DVEVVLEALKRNAKYLRGQVARRV-TMKYTCDLRFVADTRFDDDDLITRLLHEPSIRKD 128
>gi|322382345|ref|ZP_08056252.1| ribosome-binding factor A-like protein [Paenibacillus larvae subsp.
larvae B-3650]
gi|321153698|gb|EFX46073.1| ribosome-binding factor A-like protein [Paenibacillus larvae subsp.
larvae B-3650]
Length = 113
Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats.
Identities = 35/107 (32%), Positives = 63/107 (58%), Gaps = 5/107 (4%)
Query: 14 RVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-DVSPDRVI 72
RVGE+++ L I+ +E +D I ++I+ V ++ DL +A VY+S+ D + +
Sbjct: 3 RVGEQIKKELSQ-IVQSELKDPRIG--FLTITGVDVTNDLSLAKVYLSVLGSDEEKEATL 59
Query: 73 SALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
AL +IR +G+ +R LR VPEL+F++DTS+ ++ +L+
Sbjct: 60 KALGVASGYIRSELGKRIR-LRKVPELQFKFDTSIDYGSRIESLLQD 105
>gi|332976851|gb|EGK13676.1| ribosome-binding factor A [Desmospora sp. 8437]
Length = 119
Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats.
Identities = 37/108 (34%), Positives = 61/108 (56%), Gaps = 5/108 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS-PD 69
RA RVGE+V+ L +V+ +E +D + ++++ V MS DL+ A VYIS+ D
Sbjct: 5 RASRVGEQVKKELSYVL-QHEMKDPRVG--FVTVTAVEMSGDLQQAKVYISVLGDEEKKK 61
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ L F+R IGR + LR+ PEL F++D S++ ++ L+
Sbjct: 62 ETLEGLEKAKGFLRTEIGRRV-QLRHTPELIFKFDESIEHGQHISKLL 108
>gi|332559581|ref|ZP_08413903.1| ribosome-binding factor A [Rhodobacter sphaeroides WS8N]
gi|332277293|gb|EGJ22608.1| ribosome-binding factor A [Rhodobacter sphaeroides WS8N]
Length = 140
Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats.
Identities = 37/123 (30%), Positives = 59/123 (47%), Gaps = 1/123 (0%)
Query: 4 KNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP 63
S+R LRVGE +R L V+ E D ++R I++ EV S DL+VATV++
Sbjct: 10 TGTGPSQRQLRVGELIRRTLADVLNRGEIHDPELNRLSITVGEVRCSPDLKVATVHVMPL 69
Query: 64 LDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIP 123
+ I+ L+ + +R I R + L+Y P+LRFR D + + L +
Sbjct: 70 GGKDVEEAIALLSKHRGELRHHITRQM-TLKYAPDLRFRPDETFDRLDETRRLFSDETVM 128
Query: 124 VAL 126
+
Sbjct: 129 RDI 131
>gi|292486838|ref|YP_003529708.1| ribosome-binding factor A [Erwinia amylovora CFBP1430]
gi|292900764|ref|YP_003540133.1| ribosome-binding factor A [Erwinia amylovora ATCC 49946]
gi|291200612|emb|CBJ47744.1| ribosome-binding factor A [Erwinia amylovora ATCC 49946]
gi|291552255|emb|CBA19292.1| Ribosome-binding factor A [Erwinia amylovora CFBP1430]
gi|312170906|emb|CBX79165.1| Ribosome-binding factor A [Erwinia amylovora ATCC BAA-2158]
Length = 137
Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats.
Identities = 36/126 (28%), Positives = 64/126 (50%), Gaps = 7/126 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K R RV +E++ + +IL E +D + ++++S V +S DL A V+++ D
Sbjct: 2 AKEFGRPQRVSQELQKEIA-IILQREIKDPRLG-MMVTVSGVDVSRDLAYAKVFVTFLND 59
Query: 66 VSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
+ + AL +IR +G+++R LR VPEL F YD SL +++ L+ +
Sbjct: 60 KDEAAIKAGLRALGDASGYIRTLLGKAMR-LRIVPELTFFYDNSLVEGMRMSNLVTN-VV 117
Query: 123 PVALEK 128
E+
Sbjct: 118 RNDEER 123
>gi|138894785|ref|YP_001125238.1| ribosome-binding factor A [Geobacillus thermodenitrificans NG80-2]
gi|196247591|ref|ZP_03146293.1| ribosome-binding factor A [Geobacillus sp. G11MC16]
gi|166218441|sp|A4IMD9|RBFA_GEOTN RecName: Full=Ribosome-binding factor A
gi|134266298|gb|ABO66493.1| Ribosome-binding factor A [Geobacillus thermodenitrificans NG80-2]
gi|196212375|gb|EDY07132.1| ribosome-binding factor A [Geobacillus sp. G11MC16]
Length = 128
Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats.
Identities = 35/121 (28%), Positives = 63/121 (52%), Gaps = 7/121 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP-D 69
RA RVGE+++ L +I + +D I +++++V ++ DL+ A VYIS+ D +
Sbjct: 4 RATRVGEQMKKELSDIIGR-KLKDPRIG--FVTVTDVRVTGDLQQAKVYISVFGDDEQRE 60
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC--LPKIPVALE 127
+ AL FIR IG+ +R LR PE+ F D +++ ++ L+ + E
Sbjct: 61 NTLKALEKAKGFIRSEIGQRIR-LRKTPEILFEIDETIEYGSRIERLIRQISDEDGRDSE 119
Query: 128 K 128
+
Sbjct: 120 E 120
>gi|320540178|ref|ZP_08039833.1| 30s ribosome binding factor [Serratia symbiotica str. Tucson]
gi|320029844|gb|EFW11868.1| 30s ribosome binding factor [Serratia symbiotica str. Tucson]
Length = 136
Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats.
Identities = 41/130 (31%), Positives = 67/130 (51%), Gaps = 12/130 (9%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL- 64
K R+ RV +E++ + +IL E +D I + ++S V +S DL A VY++
Sbjct: 2 AKEFSRSQRVAQEMQKEIA-IILQREIKDPRIG--MATVSGVEISRDLAYAKVYVTFLNV 58
Query: 65 ---DVSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ PD+V I AL +IR +G+++R LR VPEL F YD SL +++ L+
Sbjct: 59 LAENHDPDQVTNGIKALQDAAGYIRTLLGKAMR-LRVVPELTFVYDNSLVEGMRMSNLVT 117
Query: 119 LPKIPVALEK 128
+ E+
Sbjct: 118 N-VVKNDAER 126
>gi|253686987|ref|YP_003016177.1| ribosome-binding factor A [Pectobacterium carotovorum subsp.
carotovorum PC1]
gi|259552038|sp|C6DKK4|RBFA_PECCP RecName: Full=Ribosome-binding factor A
gi|251753565|gb|ACT11641.1| ribosome-binding factor A [Pectobacterium carotovorum subsp.
carotovorum PC1]
Length = 132
Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats.
Identities = 38/126 (30%), Positives = 65/126 (51%), Gaps = 8/126 (6%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K R RV +E++ + +I+ E +D I + ++S V +S DL A V+++ D
Sbjct: 2 AKEFSRTQRVAQEMQKEIA-IIIQREVKDPRIG--MATVSGVEVSRDLAYAKVFVTFLND 58
Query: 66 VSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
P++V + AL FIR +G+++R LR VP L F YD SL +++ L+ +
Sbjct: 59 NEPEQVKTALKALQDASGFIRTLVGKAMR-LRVVPALTFSYDNSLVEGMRMSNLVTN-VV 116
Query: 123 PVALEK 128
E+
Sbjct: 117 RNDTER 122
>gi|77464688|ref|YP_354192.1| ribosome-binding factor A [Rhodobacter sphaeroides 2.4.1]
gi|123590863|sp|Q3IYU3|RBFA_RHOS4 RecName: Full=Ribosome-binding factor A
gi|77389106|gb|ABA80291.1| ribosome-binding factor A [Rhodobacter sphaeroides 2.4.1]
Length = 140
Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats.
Identities = 38/123 (30%), Positives = 59/123 (47%), Gaps = 1/123 (0%)
Query: 4 KNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP 63
S+R LRVGE +R L V+ E D ++R I++ EV S DL+VATV++
Sbjct: 10 TGTGPSQRQLRVGELIRRTLADVLNRGEIHDPELNRLSITVGEVRCSPDLKVATVHVMPL 69
Query: 64 LDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIP 123
+ IS L+ + +R I R + L+Y P+LRFR D + + L +
Sbjct: 70 GGKDVEEAISLLSKHRGELRHHITRQM-TLKYAPDLRFRPDETFDRLDETRRLFSDKTVM 128
Query: 124 VAL 126
+
Sbjct: 129 RDI 131
>gi|229544438|ref|ZP_04433496.1| ribosome-binding factor A [Bacillus coagulans 36D1]
gi|229324923|gb|EEN90600.1| ribosome-binding factor A [Bacillus coagulans 36D1]
Length = 115
Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats.
Identities = 31/108 (28%), Positives = 58/108 (53%), Gaps = 5/108 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV-SPD 69
RA RVGE+++ L +I + +D + +++++V ++ DL+ A VY+++ D
Sbjct: 4 RANRVGEQMKKELSDIIGR-KLKDPRVG--FVTVTDVEVTGDLQQAKVYLTVLGDEVQKK 60
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ L FIR +G+ +R LR PEL F D S++ ++ L+
Sbjct: 61 DTLDGLEKAKGFIRSEVGKRIR-LRKTPELIFEIDESIEYGNRIETLI 107
>gi|227112576|ref|ZP_03826232.1| ribosome-binding factor A [Pectobacterium carotovorum subsp.
brasiliensis PBR1692]
gi|227327828|ref|ZP_03831852.1| ribosome-binding factor A [Pectobacterium carotovorum subsp.
carotovorum WPP14]
Length = 132
Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats.
Identities = 38/117 (32%), Positives = 62/117 (52%), Gaps = 7/117 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K R RV +E++ + +I+ E +D I + ++S V +S DL A V+++ D
Sbjct: 2 AKEFSRTQRVAQEMQKEIA-IIIQREVKDPRIG--MATVSGVEVSRDLAYAKVFVTFLND 58
Query: 66 VSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
P++V I AL FIR +G+++R LR VP L F YD SL +++ L+
Sbjct: 59 NEPEQVQTAIKALQDASGFIRTLVGKAMR-LRVVPALTFSYDNSLVEGMRMSNLVTN 114
>gi|197117692|ref|YP_002138119.1| ribosome-binding factor A [Geobacter bemidjiensis Bem]
gi|226723601|sp|B5EI59|RBFA_GEOBB RecName: Full=Ribosome-binding factor A
gi|197087052|gb|ACH38323.1| ribosome-binding factor A [Geobacter bemidjiensis Bem]
Length = 119
Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 65/120 (54%), Gaps = 5/120 (4%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDVSP 68
+R+ +VGE++ + +++ +D I ++I+ V M+ DLR ATVY ++ D
Sbjct: 3 KRSDKVGEQIHKIISELLIKG-LKDPRIG--FLTITGVKMTPDLRQATVYFTVHGSDEDK 59
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALEK 128
+ LN +IR IG++L+ +R+VPE+ F+YDTSL + +++ E+
Sbjct: 60 KNSEAGLNSAKGYIRKEIGQALK-MRFVPEVLFKYDTSLDYGQHIESILKEIGATDDGEQ 118
>gi|291484220|dbj|BAI85295.1| ribosome-binding factor A [Bacillus subtilis subsp. natto BEST195]
Length = 115
Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats.
Identities = 35/112 (31%), Positives = 59/112 (52%), Gaps = 5/112 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP-D 69
RA RVGE+++ L +I + +D I +++++V +S DL++A VYIS+ D +
Sbjct: 2 RANRVGEQMKKELGDIISR-KLKDPRIG--FLTVTDVRVSGDLQIAKVYISVLGDEKKRE 58
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+ L FIR IG +R LR PE+ F +D S+ ++ L+
Sbjct: 59 EALKGLAKAKGFIRSEIGSRIR-LRKTPEIEFEFDESIDYGNRIETLIHELH 109
>gi|221640602|ref|YP_002526864.1| ribosome-binding factor A [Rhodobacter sphaeroides KD131]
gi|254789761|sp|B9KP41|RBFA_RHOSK RecName: Full=Ribosome-binding factor A
gi|221161383|gb|ACM02363.1| Ribosome-binding factor A [Rhodobacter sphaeroides KD131]
Length = 137
Score = 133 bits (337), Expect = 5e-30, Method: Composition-based stats.
Identities = 37/123 (30%), Positives = 59/123 (47%), Gaps = 1/123 (0%)
Query: 4 KNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP 63
S+R LRVGE +R L V+ E D ++R I++ EV S DL+VATV++
Sbjct: 7 TGTGPSQRQLRVGELIRRTLADVLNRGEIHDPELNRLSITVGEVRCSPDLKVATVHVMPL 66
Query: 64 LDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIP 123
+ I+ L+ + +R I R + L+Y P+LRFR D + + L +
Sbjct: 67 GGKDVEEAIALLSKHRGELRHHITRQM-TLKYAPDLRFRPDETFDRLDETRRLFSDETVM 125
Query: 124 VAL 126
+
Sbjct: 126 RDI 128
>gi|117926999|ref|YP_867616.1| ribosome-binding factor A [Magnetococcus sp. MC-1]
gi|171460788|sp|A0LE17|RBFA_MAGSM RecName: Full=Ribosome-binding factor A
gi|117610755|gb|ABK46210.1| ribosome-binding factor A [Magnetococcus sp. MC-1]
Length = 123
Score = 133 bits (337), Expect = 5e-30, Method: Composition-based stats.
Identities = 34/115 (29%), Positives = 55/115 (47%), Gaps = 2/115 (1%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
R RVG +R + ++ E +D + ++I EV +S DL A VY ++ +
Sbjct: 4 RTERVGNAIRKEVASMLTRGEIKDPRLGG-FVNIQEVRVSPDLSYAKVYYTVFGESDQAG 62
Query: 71 VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
V A F+R I + L+ LR+ PELRF D +++ L+ +IP A
Sbjct: 63 VADAWQRASGFLRNVIAKRLK-LRHAPELRFELDHVADYSKRIDELLNGLEIPPA 116
>gi|242242553|ref|ZP_04796998.1| ribosome-binding factor A [Staphylococcus epidermidis W23144]
gi|242233980|gb|EES36292.1| ribosome-binding factor A [Staphylococcus epidermidis W23144]
Length = 127
Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats.
Identities = 39/122 (31%), Positives = 67/122 (54%), Gaps = 5/122 (4%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
MK N+ RA RVGE+++ +M I+NN+ +D + ++I++V ++ DL A VY+
Sbjct: 6 MKRGEMMNNIRAERVGEQMKQEIMD-IVNNKVKDPRVG--FLTITDVELTNDLSQAKVYL 62
Query: 61 SLPL-DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
++ D D AL+ FI+ +G +R LR +PEL F YD S++ K+ ++
Sbjct: 63 TVLGNDKEVDNTFKALHKATGFIKSELGSRMR-LRIIPELTFEYDESIEYGNKIERMIQD 121
Query: 120 PK 121
Sbjct: 122 LH 123
>gi|152978794|ref|YP_001344423.1| ribosome-binding factor A [Actinobacillus succinogenes 130Z]
gi|171704291|sp|A6VNE1|RBFA_ACTSZ RecName: Full=Ribosome-binding factor A
gi|150840517|gb|ABR74488.1| ribosome-binding factor A [Actinobacillus succinogenes 130Z]
Length = 129
Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats.
Identities = 36/117 (30%), Positives = 66/117 (56%), Gaps = 7/117 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
+ +R+ RV +E++ + VIL E +D I ++++S+V +S DL A ++++ D
Sbjct: 2 AREFKRSDRVAQELQKEVA-VILQREVKDPRIG--MVTVSDVEVSRDLAYAKIFVTFLFD 58
Query: 66 VSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
P+ + + L +IR +G+++R LR VPELRF YD SL +++ L+
Sbjct: 59 NDPEAIKQGMKGLEKAAPYIRSLLGKAMR-LRIVPELRFVYDQSLVEGMRMSNLVSN 114
>gi|227968183|pdb|1KKG|A Chain A, Nmr Structure Of Ribosome-Binding Factor A (Rbfa)
Length = 108
Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats.
Identities = 40/110 (36%), Positives = 57/110 (51%), Gaps = 6/110 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K R RV +E++ + +IL E +D + + ++S V MS DL A VY++ D
Sbjct: 2 AKEFGRPQRVAQEMQKEIA-LILQREIKDPRLG-MMTTVSGVEMSRDLAYAKVYVTFLND 59
Query: 66 VSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWK 112
D V I AL FIR +G+++R LR VPEL F YD SL +
Sbjct: 60 KDEDAVKAGIKALQEASGFIRSLLGKAMR-LRIVPELTFFYDNSLVEGMR 108
>gi|126463528|ref|YP_001044642.1| ribosome-binding factor A [Rhodobacter sphaeroides ATCC 17029]
gi|171855226|sp|A3PNF4|RBFA_RHOS1 RecName: Full=Ribosome-binding factor A
gi|126105192|gb|ABN77870.1| ribosome-binding factor A [Rhodobacter sphaeroides ATCC 17029]
Length = 137
Score = 133 bits (336), Expect = 7e-30, Method: Composition-based stats.
Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 1/123 (0%)
Query: 4 KNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP 63
S+R LRVGE +R L V+ E D ++R I++ EV S DL+VATV++
Sbjct: 7 TGTGPSQRQLRVGELIRRTLADVLNRGEIHDPELNRLSITVGEVRCSPDLKVATVHVMPL 66
Query: 64 LDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIP 123
+ + I+ L+ + +R I R + L+Y P+LRFR D + + L +
Sbjct: 67 GGKNVEEAIALLSKHRGELRHHITRQM-TLKYAPDLRFRPDETFDRLDETRRLFSDETVM 125
Query: 124 VAL 126
+
Sbjct: 126 RDI 128
>gi|56963991|ref|YP_175722.1| ribosome-binding factor A [Bacillus clausii KSM-K16]
gi|61214762|sp|Q5WFU4|RBFA_BACSK RecName: Full=Ribosome-binding factor A
gi|56910234|dbj|BAD64761.1| ribosome-binding factor A [Bacillus clausii KSM-K16]
Length = 118
Score = 133 bits (336), Expect = 7e-30, Method: Composition-based stats.
Identities = 31/112 (27%), Positives = 63/112 (56%), Gaps = 5/112 (4%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
+ RA+RVGE+++ L +++ + +D + ++++ V ++ DL+ AT +I++ D
Sbjct: 3 NNRAVRVGEQMKKELSDILIR-DIKDPRV--RFVTVTGVDVTGDLQQATAFITVLGDEEE 59
Query: 69 -DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
++ L FIR +G+ +R LR PEL F +D S+Q ++ +L+
Sbjct: 60 RKATLAGLEKAKGFIRTELGKRIR-LRKTPELSFSFDESIQYGNRIESLLRD 110
>gi|225181386|ref|ZP_03734830.1| ribosome-binding factor A [Dethiobacter alkaliphilus AHT 1]
gi|225167967|gb|EEG76774.1| ribosome-binding factor A [Dethiobacter alkaliphilus AHT 1]
Length = 122
Score = 133 bits (336), Expect = 7e-30, Method: Composition-based stats.
Identities = 35/111 (31%), Positives = 64/111 (57%), Gaps = 4/111 (3%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-DVSP 68
+RA RVGEE++ + ++ E +D + +IS+++V ++ DLR A ++IS+ +
Sbjct: 4 QRAHRVGEEIKREVSSIL-RTEIKDPRV-TGLISVTDVAVTRDLRHAKLFISMLGSEEEQ 61
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+SAL+ + FIR IG+ +R LR+ PE+ F D S+ +N ++
Sbjct: 62 QETLSALSRAVGFIRSEIGKRIR-LRHTPEISFHLDKSIAYGAHINKILAD 111
>gi|322418691|ref|YP_004197914.1| ribosome-binding factor A [Geobacter sp. M18]
gi|320125078|gb|ADW12638.1| ribosome-binding factor A [Geobacter sp. M18]
Length = 119
Score = 133 bits (336), Expect = 7e-30, Method: Composition-based stats.
Identities = 36/109 (33%), Positives = 63/109 (57%), Gaps = 5/109 (4%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDVSP 68
+R+ +VGEE+ + +++ +D I ++I+ V M+ DLR ATVY ++ D
Sbjct: 3 KRSDKVGEEIHKIISELLIKG-LKDPRIG--FLTITGVKMTPDLRQATVYFTVHGSDEDK 59
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ LN FIR IG++L+ +R+VPE+ F+YDTSL + +++
Sbjct: 60 KASEAGLNSAKGFIRKEIGQALK-MRFVPEVLFKYDTSLDYGQHIESIL 107
>gi|332290221|ref|YP_004421073.1| ribosome-binding factor A [Gallibacterium anatis UMN179]
gi|330433117|gb|AEC18176.1| ribosome-binding factor A [Gallibacterium anatis UMN179]
Length = 128
Score = 133 bits (336), Expect = 7e-30, Method: Composition-based stats.
Identities = 36/116 (31%), Positives = 65/116 (56%), Gaps = 7/116 (6%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
+ RA RV +E++ + VIL E +D I ++++S+V +S DL A ++++ D
Sbjct: 2 AREFSRAQRVAQEIKKEIA-VILQREVKDPRIG--MVTVSDVEVSRDLAYAKIFVTFLFD 58
Query: 66 VSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
++ + L+ +IR +G+++R LR VPELRF YD SL +++ L+
Sbjct: 59 EDEQQIEQGMLGLHKASPYIRSLLGKAMR-LRIVPELRFVYDNSLVEGMRMSNLVT 113
>gi|212639519|ref|YP_002316039.1| ribosome-binding factor A [Anoxybacillus flavithermus WK1]
gi|212560999|gb|ACJ34054.1| Ribosome-binding factor A [Anoxybacillus flavithermus WK1]
Length = 127
Score = 133 bits (336), Expect = 7e-30, Method: Composition-based stats.
Identities = 34/112 (30%), Positives = 59/112 (52%), Gaps = 5/112 (4%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS- 67
S RA RVGE+++ L +I + +D I +++++V ++ DL+ A VYIS+ D
Sbjct: 10 SLRATRVGEQMKKELSDIIGR-KLKDPRIG--FVTVTDVRVTGDLQQAKVYISVLGDEEQ 66
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ L FIR IG+ +R LR PE+ F D ++ ++ +L+
Sbjct: 67 KKNTLKGLAKATGFIRSEIGQRIR-LRKTPEIYFEIDETIDYGQRIESLIKQ 117
>gi|253701578|ref|YP_003022767.1| ribosome-binding factor A [Geobacter sp. M21]
gi|259552004|sp|C6E2P9|RBFA_GEOSM RecName: Full=Ribosome-binding factor A
gi|251776428|gb|ACT19009.1| ribosome-binding factor A [Geobacter sp. M21]
Length = 119
Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats.
Identities = 36/120 (30%), Positives = 65/120 (54%), Gaps = 5/120 (4%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDVSP 68
+R+ +VGEE+ + +++ +D I ++I+ V M+ DLR ATVY ++ D
Sbjct: 3 KRSDKVGEEIHKIISELLIKG-LKDPRIG--FLTITGVKMTPDLRQATVYFTVHGSDEDK 59
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALEK 128
+ LN +IR IG++L+ +R+VPE+ F+YDTSL + +++ E+
Sbjct: 60 KNSEAGLNSAKGYIRKEIGQALK-MRFVPEVLFKYDTSLDYGQHIESILKEIGATDDGEQ 118
>gi|224476398|ref|YP_002634004.1| ribosome-binding factor A [Staphylococcus carnosus subsp. carnosus
TM300]
gi|254789763|sp|B9DPD6|RBFA_STACT RecName: Full=Ribosome-binding factor A
gi|222421005|emb|CAL27819.1| putative ribosome-binding factor A [Staphylococcus carnosus subsp.
carnosus TM300]
Length = 115
Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats.
Identities = 39/112 (34%), Positives = 64/112 (57%), Gaps = 5/112 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP-D 69
RA RVGE+++ LM +I NN+ +D I I+I++V ++ DL +A VY+++ + D
Sbjct: 5 RAERVGEQMKKELMDII-NNKVKDPRIG--FITITDVQVTNDLSLAKVYLTVLGNEKEVD 61
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
AL FI+ +G +R LR VPEL+F YD S++ K+ ++
Sbjct: 62 DTFKALEKAKGFIKSELGSRMR-LRIVPELQFEYDHSIEYGNKIEKMIQDLH 112
>gi|311030084|ref|ZP_07708174.1| ribosome-binding factor A [Bacillus sp. m3-13]
Length = 130
Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats.
Identities = 34/109 (31%), Positives = 59/109 (54%), Gaps = 5/109 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP-D 69
R+ RVGE+++ L +I + +D + +++++V ++ DL+ A V+IS+ D
Sbjct: 13 RSNRVGEQMKKELSDIIGR-KIKDPRVG--FVTVTDVQVTGDLQQAKVFISVLGDDEKRQ 69
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ L FIR IGR +R LR PEL F +D S+ +N+L+
Sbjct: 70 DTLIGLAKAKGFIRSEIGRRIR-LRKTPELFFEFDESIAYGNHINSLIH 117
>gi|310641597|ref|YP_003946355.1| ribosome-binding factor a [Paenibacillus polymyxa SC2]
gi|309246547|gb|ADO56114.1| Ribosome-binding factor A [Paenibacillus polymyxa SC2]
Length = 116
Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats.
Identities = 32/110 (29%), Positives = 60/110 (54%), Gaps = 5/110 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPD- 69
R RVGE+++ L +++ E +D I I+++ V ++ DL A VY+S+ D
Sbjct: 5 RTGRVGEQIKKELS-LLIQTELKDPRIG--FITVTGVDVTNDLSQAKVYLSVLGDEEQKT 61
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ AL+ ++R +G+ +R LR++PEL F+ D S+ ++ L+
Sbjct: 62 SSLKALDKANGYLRSELGKRIR-LRHIPELIFKIDESIAYGSRIEKLLSD 110
>gi|319649518|ref|ZP_08003674.1| ribosome-binding factor A [Bacillus sp. 2_A_57_CT2]
gi|317398680|gb|EFV79362.1| ribosome-binding factor A [Bacillus sp. 2_A_57_CT2]
Length = 126
Score = 133 bits (335), Expect = 9e-30, Method: Composition-based stats.
Identities = 34/112 (30%), Positives = 62/112 (55%), Gaps = 5/112 (4%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
S RA RVGE+++ L +I + +D + +++++V ++ DL+ ATV+IS+ D
Sbjct: 2 SLRANRVGEQMKKELGEIIGR-KIKDPRVG--FVTVTDVQVTGDLQQATVFISVLGDEEQ 58
Query: 69 -DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ + L FIR IG+ +R LR PE+ F +D S+ ++ +L+
Sbjct: 59 RENTLRGLAKAKGFIRSEIGQRIR-LRKTPEILFEFDESIDYGNRIESLLHQ 109
>gi|308068701|ref|YP_003870306.1| ribosome-binding factor A [Paenibacillus polymyxa E681]
gi|305857980|gb|ADM69768.1| Ribosome-binding factor A [Paenibacillus polymyxa E681]
Length = 116
Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats.
Identities = 32/110 (29%), Positives = 60/110 (54%), Gaps = 5/110 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS-PD 69
R RVGE+++ L +I E +D I I+++ V ++ DL A +Y+S+ D +
Sbjct: 5 RTGRVGEQIKKELSQLI-QTELKDPRIG--FITVTGVDLTNDLSQAKIYLSVLGDEEQKN 61
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ AL+ ++R +G+ +R LR++PEL F+ D S+ ++ L+
Sbjct: 62 SSLKALDKANGYLRSELGKRIR-LRHIPELIFKIDESIAYGSRIEKLLSD 110
>gi|205373416|ref|ZP_03226220.1| ribosome-binding factor A [Bacillus coahuilensis m4-4]
Length = 117
Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats.
Identities = 34/113 (30%), Positives = 63/113 (55%), Gaps = 4/113 (3%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
S R+ R+GE+++ L +I + +D I +++++V ++ DL+ A VYI++ D
Sbjct: 2 SLRSNRIGEQMKKELGDIISR-KIKDPRIG--FVTVTDVQVTGDLQQAKVYITVLDDSKR 58
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+ + L+ FIR IG +R LR PEL F +D S+Q ++ +++ K
Sbjct: 59 EDTLKGLSKAKGFIRSEIGSRIR-LRKTPELLFEFDESIQYGNRIESIIRDIK 110
>gi|294634516|ref|ZP_06713051.1| ribosome-binding factor A [Edwardsiella tarda ATCC 23685]
gi|291092030|gb|EFE24591.1| ribosome-binding factor A [Edwardsiella tarda ATCC 23685]
Length = 132
Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats.
Identities = 37/117 (31%), Positives = 63/117 (53%), Gaps = 7/117 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
+ R RV +E++ + +IL E +D + + ++S V +S DL A V+++ D
Sbjct: 2 AREFSRTQRVAQEMQKEIA-IILQREVKDPRVG--MATVSGVEVSRDLAYAKVFVTFLND 58
Query: 66 VSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
P+ V + AL FIR +G+++R LR VPEL F YD+SL +++ L+
Sbjct: 59 GEPEAVKAGLKALQDASGFIRMLLGKAMR-LRVVPELTFSYDSSLVEGMRMSNLVSN 114
>gi|255524227|ref|ZP_05391186.1| ribosome-binding factor A [Clostridium carboxidivorans P7]
gi|296185348|ref|ZP_06853758.1| ribosome-binding factor A [Clostridium carboxidivorans P7]
gi|255512052|gb|EET88333.1| ribosome-binding factor A [Clostridium carboxidivorans P7]
gi|296050182|gb|EFG89606.1| ribosome-binding factor A [Clostridium carboxidivorans P7]
Length = 121
Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats.
Identities = 36/112 (32%), Positives = 63/112 (56%), Gaps = 4/112 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS-PD 69
R+ R+ EE++ + +I N+ +D +S +IS+++V ++ DLR A VY+S+ D +
Sbjct: 5 RSGRINEEMKREISTII-QNDIKDPRLSA-MISVTKVDVTKDLRYAKVYVSIFGDEESKN 62
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
AL + FIR IG + NLRY PE+ D +++ ++AL+ K
Sbjct: 63 STFEALKGSAGFIRREIGHKI-NLRYTPEILIELDNTIEQGMHIDALLHKIK 113
>gi|125973505|ref|YP_001037415.1| ribosome-binding factor A [Clostridium thermocellum ATCC 27405]
gi|281417708|ref|ZP_06248728.1| ribosome-binding factor A [Clostridium thermocellum JW20]
gi|182676539|sp|A3DE43|RBFA_CLOTH RecName: Full=Ribosome-binding factor A
gi|125713730|gb|ABN52222.1| ribosome-binding factor A [Clostridium thermocellum ATCC 27405]
gi|281409110|gb|EFB39368.1| ribosome-binding factor A [Clostridium thermocellum JW20]
Length = 123
Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats.
Identities = 37/114 (32%), Positives = 59/114 (51%), Gaps = 4/114 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
R R+ EE++ + +I NE +D +S+ +ISI+EV ++ DLR A VY+S + +
Sbjct: 3 RIERISEEIKREISDII-QNELKDPRLSK-LISITEVNVTKDLRYAKVYVSVMGSEEEKA 60
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIP 123
+ L FIR IGR + LRY PE+ F D S++ + L+
Sbjct: 61 NSLEGLKSAAGFIRREIGRRV-QLRYTPEIHFELDNSIERGAYITKLINETSAQ 113
>gi|297584083|ref|YP_003699863.1| ribosome-binding factor A [Bacillus selenitireducens MLS10]
gi|297142540|gb|ADH99297.1| ribosome-binding factor A [Bacillus selenitireducens MLS10]
Length = 115
Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats.
Identities = 31/114 (27%), Positives = 63/114 (55%), Gaps = 5/114 (4%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
+ RA RVGE+++ L +I +D I ++++ V ++ DL+ AT ++++ D
Sbjct: 1 MGNLRANRVGEQIKKELTDIIQRG-IKDPRIG--FVTVTAVDVTGDLQQATAFVTVYGDD 57
Query: 67 SP-DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
++ + AL +IR IG+ ++ LR PEL F++D S++ +++ L+
Sbjct: 58 DEREKSLLALEKANGYIRSEIGKRIK-LRKTPELDFKFDESIERGNRIDELLRN 110
>gi|238918425|ref|YP_002931939.1| ribosome-binding factor A [Edwardsiella ictaluri 93-146]
gi|259551976|sp|C5BFB8|RBFA_EDWI9 RecName: Full=Ribosome-binding factor A
gi|238867993|gb|ACR67704.1| ribosome-binding factor A, putative [Edwardsiella ictaluri 93-146]
Length = 132
Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats.
Identities = 37/117 (31%), Positives = 62/117 (52%), Gaps = 7/117 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
+ R RV +E++ + +IL E +D + + ++S V +S DL A V+++ D
Sbjct: 2 AREFSRTQRVAQEMQKEIA-IILQREVKDPRVG--MATVSGVEVSRDLAYAKVFVTFLND 58
Query: 66 VSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
P+ V + AL FIR +G+++R LR VPEL F YD SL +++ L+
Sbjct: 59 GEPETVKSGLKALQDASGFIRMLLGKAMR-LRVVPELTFAYDASLVEGMRMSNLVSN 114
>gi|254974857|ref|ZP_05271329.1| ribosome-binding factor A [Clostridium difficile QCD-66c26]
gi|255092244|ref|ZP_05321722.1| ribosome-binding factor A [Clostridium difficile CIP 107932]
gi|255313984|ref|ZP_05355567.1| ribosome-binding factor A [Clostridium difficile QCD-76w55]
gi|255516664|ref|ZP_05384340.1| ribosome-binding factor A [Clostridium difficile QCD-97b34]
gi|255649763|ref|ZP_05396665.1| ribosome-binding factor A [Clostridium difficile QCD-37x79]
gi|260682919|ref|YP_003214204.1| ribosome-binding factor A [Clostridium difficile CD196]
gi|260686517|ref|YP_003217650.1| ribosome-binding factor A [Clostridium difficile R20291]
gi|306519868|ref|ZP_07406215.1| ribosome-binding factor A [Clostridium difficile QCD-32g58]
gi|260209082|emb|CBA62230.1| ribosome-binding factor A [Clostridium difficile CD196]
gi|260212533|emb|CBE03487.1| ribosome-binding factor A [Clostridium difficile R20291]
Length = 126
Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats.
Identities = 30/112 (26%), Positives = 64/112 (57%), Gaps = 4/112 (3%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS 67
+ R R+ EE+R + +++N +D I ++S+++V ++ DLR A VY+S+
Sbjct: 3 SYNRTRRIAEEIRKVVSTMLING-VKDPRI-TSMVSVTDVEVTNDLRYAYVYVSILGG-D 59
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ ++ L +IR +G++++ LRY+PE+ F+ D S++ ++ L+
Sbjct: 60 EESTLTGLKSAGGYIRREVGKNIK-LRYIPEIVFKLDDSIEKGMYMDNLIKR 110
>gi|323489592|ref|ZP_08094819.1| ribosome-binding factor A [Planococcus donghaensis MPA1U2]
gi|323396723|gb|EGA89542.1| ribosome-binding factor A [Planococcus donghaensis MPA1U2]
Length = 116
Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats.
Identities = 36/116 (31%), Positives = 65/116 (56%), Gaps = 5/116 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-DVSPD 69
RA RV E+++ L +I + +D I +++++V ++ DL+ ATVYIS+ D + +
Sbjct: 4 RANRVAEQMKKELSDIISR-KLKDPRIG--FVTVTDVEVTGDLQQATVYISVLGEDHAKE 60
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
+ + L + FIR IG+ +R LR PEL F D+S+ +++ L+ + P
Sbjct: 61 QTLLGLTKSKGFIRSEIGQRIR-LRKTPELSFEIDSSVAYGNRIDTLLRDIQEPKE 115
>gi|253682529|ref|ZP_04863326.1| ribosome-binding factor A [Clostridium botulinum D str. 1873]
gi|253562241|gb|EES91693.1| ribosome-binding factor A [Clostridium botulinum D str. 1873]
Length = 121
Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats.
Identities = 34/112 (30%), Positives = 60/112 (53%), Gaps = 4/112 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-DVSPD 69
R R+ EEVR + +I ++ D + ++S++ V ++ DLR A V+IS+ + S +
Sbjct: 5 RLGRINEEVRKEISNII-RDDIHDPRL-TAMVSVTRVEVTNDLRYAKVFISIFGSNNSKE 62
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+ AL + FIR +G ++ LRY PE+ D S++ +N L+ K
Sbjct: 63 ETLEALKSSAGFIRREVGHRVK-LRYTPEIVLELDESIEHGMHINDLLSNLK 113
>gi|220927911|ref|YP_002504820.1| ribosome-binding factor A [Clostridium cellulolyticum H10]
gi|219998239|gb|ACL74840.1| ribosome-binding factor A [Clostridium cellulolyticum H10]
Length = 117
Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats.
Identities = 38/112 (33%), Positives = 60/112 (53%), Gaps = 4/112 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-DVSPD 69
R +R+ EEV+ + +I N+ +D + ++SI ++ DLR A VY+S+ D
Sbjct: 4 RIVRISEEVKKEISNII-QNDIKDPRLPS-MVSIVSCSVTKDLRYAKVYVSVFGNDEQKK 61
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
ISAL FIR +G + LRY PE+ F DTS++ + +N L+ K
Sbjct: 62 NAISALKSAAGFIRRELGHRV-QLRYTPEIHFELDTSIEHGFHINKLLDDAK 112
>gi|299534738|ref|ZP_07048068.1| ribosome-binding factor A [Lysinibacillus fusiformis ZC1]
gi|298729826|gb|EFI70371.1| ribosome-binding factor A [Lysinibacillus fusiformis ZC1]
Length = 113
Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats.
Identities = 33/114 (28%), Positives = 63/114 (55%), Gaps = 5/114 (4%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI-SLPLDVS 67
S R+ RV E+++ L ++ + +D + ++++ V ++ DL+ AT+YI SL +
Sbjct: 2 SLRSNRVAEQMKKELGDILGR-KIKDPRVG--FVTVTGVEVTGDLQQATIYITSLGNERE 58
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+ + AL FIR IG +R LR PEL F +D+S++ ++++L+
Sbjct: 59 REETLKALVKASGFIRSEIGSRIR-LRRTPELIFEFDSSIEYGNRIDSLLRDLH 111
>gi|219870868|ref|YP_002475243.1| ribosome-binding factor A [Haemophilus parasuis SH0165]
gi|254789752|sp|B8F4P3|RBFA_HAEPS RecName: Full=Ribosome-binding factor A
gi|219691072|gb|ACL32295.1| ribosome-binding factor A [Haemophilus parasuis SH0165]
Length = 127
Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats.
Identities = 40/126 (31%), Positives = 68/126 (53%), Gaps = 8/126 (6%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
+ RA RV +E++ + +IL E +D I ++++S+V +S DL A V+++ D
Sbjct: 2 AREFSRADRVAQELQKEIA-IILQREVKDPRIG--MVTVSDVEISRDLAYAKVFVTFLFD 58
Query: 66 VSP---DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
+R + LN +IR +G+++R LR VPELRF YD SL +++ L+ I
Sbjct: 59 SDESAVERGLEGLNKASGYIRTLVGKAMR-LRIVPELRFVYDQSLVEGMRMSNLVTN-VI 116
Query: 123 PVALEK 128
E+
Sbjct: 117 RKDQER 122
>gi|304316861|ref|YP_003852006.1| ribosome-binding factor A [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302778363|gb|ADL68922.1| ribosome-binding factor A [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 119
Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats.
Identities = 34/119 (28%), Positives = 62/119 (52%), Gaps = 4/119 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDVSPD 69
R+ R+ EE++ + +I E +D IS + SI+++ ++ DLR A +YIS+ D
Sbjct: 4 RSGRLSEEIKKEVSKMIF-EEIKDPRISN-MTSITDIEVTKDLRYAKIYISVYGNDDEKK 61
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALEK 128
+ L FIR +G+ ++ LRY PEL F D S++ ++ ++ + +K
Sbjct: 62 STLEGLKSATGFIRHELGKRIK-LRYTPELIFEIDNSIEYGAHISKILRELDKQESEDK 119
>gi|293390257|ref|ZP_06634591.1| ribosome-binding factor A [Aggregatibacter actinomycetemcomitans
D7S-1]
gi|290950791|gb|EFE00910.1| ribosome-binding factor A [Aggregatibacter actinomycetemcomitans
D7S-1]
Length = 128
Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats.
Identities = 35/117 (29%), Positives = 64/117 (54%), Gaps = 7/117 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
+ +R+ RV +E++ + VIL E +D I ++++S+V +S DL A V+++ D
Sbjct: 2 AREFKRSDRVAQEIQKEIA-VILQREVKDPRIG--MVTVSDVDVSSDLAYAKVFVTFLFD 58
Query: 66 VSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ + L +IR +G+++R LR VPE+RF YD SL +++ L+
Sbjct: 59 HDEQAIAQGMKGLEKAAPYIRTLLGKAMR-LRIVPEIRFIYDQSLVEGMRMSNLVTN 114
>gi|322514413|ref|ZP_08067456.1| ribosome-binding factor A [Actinobacillus ureae ATCC 25976]
gi|322119661|gb|EFX91719.1| ribosome-binding factor A [Actinobacillus ureae ATCC 25976]
Length = 137
Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 35/117 (29%), Positives = 65/117 (55%), Gaps = 7/117 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
+ +R+ RV +E++ + VIL E +D I ++++S+V +S DL A ++++ D
Sbjct: 12 SREFKRSDRVAQELQKEIA-VILQREVKDPRIG--MVTVSDVEVSRDLAYAKIFVTFLFD 68
Query: 66 VSP---DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
++ + L +IR +G+++R LR VPELRF YD SL +++ L+
Sbjct: 69 NDQSAIEQGMKGLEKASPYIRSLVGKAMR-LRIVPELRFIYDQSLVEGMRMSNLVSN 124
>gi|169827170|ref|YP_001697328.1| ribosome-binding factor A [Lysinibacillus sphaericus C3-41]
gi|168991658|gb|ACA39198.1| Ribosome-binding factor A [Lysinibacillus sphaericus C3-41]
Length = 113
Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 33/114 (28%), Positives = 62/114 (54%), Gaps = 5/114 (4%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI-SLPLDVS 67
S R+ RV E+++ L ++ + +D + ++++ V ++ DL+ AT+YI SL +
Sbjct: 2 SLRSNRVAEQMKKELGDILGR-KIKDPRVG--FVTVTGVEVTGDLQQATIYITSLGNERE 58
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+ + AL FIR IG +R LR PEL F +D+S++ +++ L+
Sbjct: 59 REETLKALVKASGFIRSEIGSRIR-LRRTPELIFEFDSSIEYGNRIDTLLRDLH 111
>gi|327441009|dbj|BAK17374.1| ribosome-binding factor A [Solibacillus silvestris StLB046]
Length = 114
Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 36/111 (32%), Positives = 63/111 (56%), Gaps = 5/111 (4%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI-SLPLDVS 67
S R+ RV E+++ + +I + +D + +++++V ++ DL+ ATVYI SL D
Sbjct: 2 SLRSNRVAEQMKKEITEIIAR-KIKDPRVG--FVTVTDVAVTGDLQQATVYITSLGNDRE 58
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ AL FIR +G +R LR PEL F +DT+++ K++AL+
Sbjct: 59 RAETLQALEKASGFIRSEVGSRIR-LRRTPELAFEFDTAIEYGNKIDALLR 108
>gi|303240814|ref|ZP_07327327.1| ribosome-binding factor A [Acetivibrio cellulolyticus CD2]
gi|302591702|gb|EFL61437.1| ribosome-binding factor A [Acetivibrio cellulolyticus CD2]
Length = 118
Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 34/110 (30%), Positives = 59/110 (53%), Gaps = 4/110 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
R +R+ EE+R + +I E +D +SR +IS++ V ++ DLR A V++S + D
Sbjct: 3 RTVRISEEMRKEISAII-QGELKDPRLSR-LISVTNVNVTKDLRYAKVFVSIMGSDEEKK 60
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ L FIR +G + LRY PE++F D S++ ++ L+
Sbjct: 61 NALDGLKSAAGFIRREVGHRI-QLRYTPEIQFELDNSIEHGAYISKLIND 109
>gi|270265060|ref|ZP_06193323.1| ribosome-binding factor A [Serratia odorifera 4Rx13]
gi|270040994|gb|EFA14095.1| ribosome-binding factor A [Serratia odorifera 4Rx13]
Length = 136
Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 41/130 (31%), Positives = 65/130 (50%), Gaps = 12/130 (9%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL- 64
K R RV +E++ + +IL E +D I + ++S V +S DL A VY++
Sbjct: 2 AKEFSRGQRVAQEMQKEIA-IILQREVKDPRIG--MATVSGVEVSRDLAYAKVYVTFLNV 58
Query: 65 ---DVSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ PD V I AL +IR +G+++R LR VPEL F YD SL +++ L+
Sbjct: 59 LTENADPDLVPKGIKALEDASGYIRTLLGKAMR-LRVVPELTFAYDNSLVEGMRMSNLVT 117
Query: 119 LPKIPVALEK 128
+ E+
Sbjct: 118 N-VVKNDAER 126
>gi|254462052|ref|ZP_05075468.1| ribosome-binding factor A [Rhodobacterales bacterium HTCC2083]
gi|206678641|gb|EDZ43128.1| ribosome-binding factor A [Rhodobacteraceae bacterium HTCC2083]
Length = 142
Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 39/126 (30%), Positives = 61/126 (48%), Gaps = 1/126 (0%)
Query: 3 NKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL 62
+ S+R LRVGE +R L ++ + D ++R ++I EV +S DLRVATVY
Sbjct: 9 SSGSGPSQRQLRVGELIRRGLSEILQRGDVHDADLNRLSVTIGEVRVSPDLRVATVYALP 68
Query: 63 PLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
D VI L N +R I + L L++ P++RFR D + + L +
Sbjct: 69 LGGEGKDDVIGLLAKNKGELRQLINKKL-ALKHSPDMRFRLDETFDKMDETRRLFEQEHV 127
Query: 123 PVALEK 128
+E+
Sbjct: 128 RADIER 133
>gi|126698909|ref|YP_001087806.1| ribosome-binding factor A [Clostridium difficile 630]
gi|255100330|ref|ZP_05329307.1| ribosome-binding factor A [Clostridium difficile QCD-63q42]
gi|255306268|ref|ZP_05350440.1| ribosome-binding factor A [Clostridium difficile ATCC 43255]
gi|123174598|sp|Q18BH6|RBFA_CLOD6 RecName: Full=Ribosome-binding factor A
gi|115250346|emb|CAJ68168.1| Ribosome-binding factor A [Clostridium difficile]
Length = 126
Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 30/112 (26%), Positives = 65/112 (58%), Gaps = 4/112 (3%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS 67
+ R R+ EE+R + +++N +D I ++S+++V ++ DLR A VY+S+
Sbjct: 3 SYNRTRRIAEEIRKVVSTMLING-VKDPRI-TSMVSVTDVEVTNDLRYAYVYVSILGG-D 59
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ ++ L +IR +G++++ LRY+PE+ F+ D S++ +++L+
Sbjct: 60 EESTLTGLKSAGGYIRREVGKNIK-LRYIPEIVFKLDDSIEKGMYMDSLIKR 110
>gi|126652566|ref|ZP_01724731.1| ribosome-binding factor A [Bacillus sp. B14905]
gi|126590694|gb|EAZ84810.1| ribosome-binding factor A [Bacillus sp. B14905]
Length = 113
Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 34/111 (30%), Positives = 62/111 (55%), Gaps = 5/111 (4%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI-SLPLDVS 67
S R+ RV E+++ L ++ + +D + ++++ V ++ DL+ AT+YI SL +
Sbjct: 2 SLRSNRVAEQMKKELGDILGR-KIKDPRVG--FVTVTGVEVTGDLQQATIYITSLGNERE 58
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ I AL FIR IG +R LR PEL F +D+S++ +++ L+
Sbjct: 59 REETIKALVKASGFIRSEIGSRIR-LRRTPELIFEFDSSIEYGNRIDTLLR 108
>gi|262274882|ref|ZP_06052693.1| ribosome-binding factor A [Grimontia hollisae CIP 101886]
gi|262221445|gb|EEY72759.1| ribosome-binding factor A [Grimontia hollisae CIP 101886]
Length = 130
Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 33/116 (28%), Positives = 62/116 (53%), Gaps = 6/116 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP-- 63
K R RV ++++ + +IL E +D I ++++S V +S DL A V+++
Sbjct: 2 AKEFSRTQRVSQQLQKEIA-LILQREIKDPRIG--MVTVSGVEVSRDLAYAKVFVTFLTM 58
Query: 64 LDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
D +P + AL+ +IR +G+++R LR PE+ F +D SL +++ L+
Sbjct: 59 GDQTPQGGLEALHEATGYIRSLLGKAIR-LRVTPEITFYFDASLTEGMRISNLVSQ 113
>gi|293393152|ref|ZP_06637467.1| ribosome-binding factor A [Serratia odorifera DSM 4582]
gi|291424298|gb|EFE97512.1| ribosome-binding factor A [Serratia odorifera DSM 4582]
Length = 136
Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 40/130 (30%), Positives = 65/130 (50%), Gaps = 12/130 (9%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL- 64
K R RV +E++ + +IL E +D + + ++S V +S DL A VY++
Sbjct: 2 AKEFSRGQRVAQEMQKEIA-IILQREVKDPRVG--MATVSGVEVSRDLAYAKVYVTFLNV 58
Query: 65 ---DVSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ PD V I AL +IR +G+++R LR VPEL F YD SL +++ L+
Sbjct: 59 LTENHDPDLVTNGIKALQDASGYIRTLLGKAMR-LRVVPELTFAYDNSLVEGMRMSNLVT 117
Query: 119 LPKIPVALEK 128
+ E+
Sbjct: 118 N-VVKNDAER 126
>gi|256003323|ref|ZP_05428314.1| ribosome-binding factor A [Clostridium thermocellum DSM 2360]
gi|255992613|gb|EEU02704.1| ribosome-binding factor A [Clostridium thermocellum DSM 2360]
gi|316940256|gb|ADU74290.1| ribosome-binding factor A [Clostridium thermocellum DSM 1313]
Length = 123
Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 37/114 (32%), Positives = 58/114 (50%), Gaps = 4/114 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD-VSPD 69
R R+ EE++ + +I NE +D +S+ +ISI+EV ++ DLR A VY+S+
Sbjct: 3 RIERISEEIKREISDII-QNELKDPRLSK-LISITEVNVTKDLRYAKVYVSVMGSKEEKA 60
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIP 123
+ L FIR IGR + LRY PE+ F D S++ + L+
Sbjct: 61 NSLEGLKSAAGFIRREIGRRV-QLRYTPEIHFELDNSIERGAYITKLINETSAQ 113
>gi|157368737|ref|YP_001476726.1| ribosome-binding factor A [Serratia proteamaculans 568]
gi|166918678|sp|A8G908|RBFA_SERP5 RecName: Full=Ribosome-binding factor A
gi|157320501|gb|ABV39598.1| ribosome-binding factor A [Serratia proteamaculans 568]
Length = 136
Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 39/130 (30%), Positives = 65/130 (50%), Gaps = 12/130 (9%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL- 64
K R RV +E++ + +IL E +D + + ++S V +S DL A VY++
Sbjct: 2 AKEFSRGQRVAQEMQKEIA-IILQREVKDPRVG--MATVSGVEVSRDLAYAKVYVTFLNV 58
Query: 65 ---DVSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ P+ V I AL +IR +G+++R LR VPEL F YD SL +++ L+
Sbjct: 59 LTENADPNLVPNGIKALEDASGYIRTLLGKAMR-LRVVPELTFAYDNSLVEGMRMSNLVT 117
Query: 119 LPKIPVALEK 128
+ E+
Sbjct: 118 N-VVKNDAER 126
>gi|167856180|ref|ZP_02478918.1| ribosome-binding factor A [Haemophilus parasuis 29755]
gi|167852702|gb|EDS23978.1| ribosome-binding factor A [Haemophilus parasuis 29755]
Length = 127
Score = 131 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 40/126 (31%), Positives = 68/126 (53%), Gaps = 8/126 (6%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
+ RA RV +E++ + +IL E +D I ++++S+V +S DL A V+++ D
Sbjct: 2 AREFSRADRVAQELQKEIA-IILQREVKDPRIG--MVTVSDVEISRDLAYAKVFVTFLFD 58
Query: 66 VSP---DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
+R + LN +IR +G+++R LR VPELRF YD SL +++ L+ I
Sbjct: 59 SDESAVERGLEGLNKASGYIRTLVGKAMR-LRIVPELRFVYDQSLVEGMRMSNLVTN-VI 116
Query: 123 PVALEK 128
E+
Sbjct: 117 RKDQER 122
>gi|146297074|ref|YP_001180845.1| ribosome-binding factor A [Caldicellulosiruptor saccharolyticus DSM
8903]
gi|166218427|sp|A4XL69|RBFA_CALS8 RecName: Full=Ribosome-binding factor A
gi|145410650|gb|ABP67654.1| ribosome-binding factor A [Caldicellulosiruptor saccharolyticus DSM
8903]
Length = 135
Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats.
Identities = 38/124 (30%), Positives = 64/124 (51%), Gaps = 4/124 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP--L 64
RA RV EE++ + +I +E +D I ++ISI +V MS DLR A V++S+
Sbjct: 1 MQFERADRVAEEIKKEISDII-QHELKDPRICAELISIVKVNMSKDLRHAKVFVSIFDKN 59
Query: 65 DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPV 124
+ + AL +IR I R + NLR+ PE+ F D S++ +++ ++ I
Sbjct: 60 RENITSTMKALENAKPYIRREISRRI-NLRFSPEISFELDDSIEYGARISQILNQLNIAK 118
Query: 125 ALEK 128
E+
Sbjct: 119 DEEE 122
>gi|332981615|ref|YP_004463056.1| ribosome-binding factor A [Mahella australiensis 50-1 BON]
gi|332699293|gb|AEE96234.1| ribosome-binding factor A [Mahella australiensis 50-1 BON]
Length = 122
Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats.
Identities = 32/114 (28%), Positives = 58/114 (50%), Gaps = 4/114 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
R R+ EE++ + +I NE +D + + S+++V ++ DL+ A VY+S+ D
Sbjct: 1 MEFSRLARISEELKREISDII-RNELKDPRVP-MMTSVTKVEITNDLKYAKVYVSVLGDE 58
Query: 67 SP-DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
LN F+R +G +R LRY P++ F DTS++ ++ L+
Sbjct: 59 DTVKNAFDGLNSAAGFVRKEVGSRIR-LRYTPQIIFVRDTSIEYGAHISKLLHD 111
>gi|167037620|ref|YP_001665198.1| ribosome-binding factor A [Thermoanaerobacter pseudethanolicus ATCC
33223]
gi|289578385|ref|YP_003477012.1| ribosome-binding factor A [Thermoanaerobacter italicus Ab9]
gi|297544661|ref|YP_003676963.1| ribosome-binding factor A [Thermoanaerobacter mathranii subsp.
mathranii str. A3]
gi|320116035|ref|YP_004186194.1| ribosome-binding factor A [Thermoanaerobacter brockii subsp. finnii
Ako-1]
gi|166856454|gb|ABY94862.1| ribosome-binding factor A [Thermoanaerobacter pseudethanolicus ATCC
33223]
gi|289528098|gb|ADD02450.1| ribosome-binding factor A [Thermoanaerobacter italicus Ab9]
gi|296842436|gb|ADH60952.1| ribosome-binding factor A [Thermoanaerobacter mathranii subsp.
mathranii str. A3]
gi|319929126|gb|ADV79811.1| ribosome-binding factor A [Thermoanaerobacter brockii subsp. finnii
Ako-1]
Length = 119
Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats.
Identities = 31/108 (28%), Positives = 59/108 (54%), Gaps = 4/108 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDVSPD 69
R R+ EE++ + +IL E +D I + ++SI+++ ++ DLR A VY+S+ +
Sbjct: 4 RNNRLSEEIKKEISKMIL-EEIKDPRI-KAMVSITDIELTKDLRYAKVYVSIYGNEEDKR 61
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
L +IR IGR ++ +RY PE+ F D S++ ++ ++
Sbjct: 62 ETFEGLKSAAGYIRHEIGRRIK-MRYTPEIIFELDHSIEYGAHISEIL 108
>gi|254361247|ref|ZP_04977390.1| ribosome binding factor A [Mannheimia haemolytica PHL213]
gi|261492529|ref|ZP_05989082.1| ribosome binding factor A [Mannheimia haemolytica serotype A2 str.
BOVINE]
gi|261496804|ref|ZP_05993178.1| ribosome binding factor A [Mannheimia haemolytica serotype A2 str.
OVINE]
gi|153092743|gb|EDN73786.1| ribosome binding factor A [Mannheimia haemolytica PHL213]
gi|261307551|gb|EEY08880.1| ribosome binding factor A [Mannheimia haemolytica serotype A2 str.
OVINE]
gi|261311688|gb|EEY12838.1| ribosome binding factor A [Mannheimia haemolytica serotype A2 str.
BOVINE]
Length = 126
Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats.
Identities = 38/126 (30%), Positives = 68/126 (53%), Gaps = 8/126 (6%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
+ +R+ RV +E++ + VIL E +D I ++++S+V +S DL A ++++ D
Sbjct: 2 SREFKRSDRVAQELQKEVA-VILQREVKDPRIG--MVTVSDVEVSRDLAYAKIFVTFLFD 58
Query: 66 VSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
+ + + L +IR +G+++R LR VPELRF YD SL +++ L+ I
Sbjct: 59 NDAEAIKQGMQGLEKASPYIRTLLGKAMR-LRIVPELRFIYDESLVEGMRMSNLVSS-VI 116
Query: 123 PVALEK 128
EK
Sbjct: 117 KNDEEK 122
>gi|51892661|ref|YP_075352.1| ribosome-binding factor A [Symbiobacterium thermophilum IAM 14863]
gi|61214894|sp|Q67P85|RBFA_SYMTH RecName: Full=Ribosome-binding factor A
gi|51856350|dbj|BAD40508.1| ribosome-binding factor A [Symbiobacterium thermophilum IAM 14863]
Length = 125
Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats.
Identities = 36/108 (33%), Positives = 60/108 (55%), Gaps = 5/108 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-DVSPD 69
RA+RVGE++R L +L +E +D I +SI +V +S D+R A +Y+S+ D
Sbjct: 6 RAIRVGEQMREELAQ-LLRDEVKDPRIG--FVSIVKVEVSRDIRHAKIYVSVLGNDQQKK 62
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
++ L F+R + + L LRY+PEL F D S++ ++ L+
Sbjct: 63 ETMAGLASATGFLRSELAKRL-QLRYMPELHFALDESIEHGQRIAQLL 109
>gi|126727800|ref|ZP_01743630.1| ribosome-binding factor A [Rhodobacterales bacterium HTCC2150]
gi|126702927|gb|EBA02030.1| ribosome-binding factor A [Rhodobacterales bacterium HTCC2150]
Length = 144
Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats.
Identities = 36/127 (28%), Positives = 59/127 (46%), Gaps = 1/127 (0%)
Query: 2 KNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS 61
K+ S+R LRVGE +R L V+ E D ++R I++ EV S DL++AT +I
Sbjct: 6 KDSGQGPSQRQLRVGEVIRRTLAEVLQRGEIHDPDLNRMSITVGEVRASPDLKIATAFIL 65
Query: 62 LPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+ + L N IR I + ++ L++ PELRF D + ++
Sbjct: 66 PLGGEGAEEALDLLRKNRHEIRRVISKKMK-LKHSPELRFLIDVTFDRIDDTRRMLAQEA 124
Query: 122 IPVALEK 128
+ +K
Sbjct: 125 VTRDTQK 131
>gi|68250153|ref|YP_249265.1| ribosome-binding factor A [Haemophilus influenzae 86-028NP]
gi|145629355|ref|ZP_01785154.1| ribosome-binding factor A [Haemophilus influenzae 22.1-21]
gi|145630826|ref|ZP_01786604.1| ribosome-binding factor A [Haemophilus influenzae R3021]
gi|145633238|ref|ZP_01788969.1| ribosome-binding factor A [Haemophilus influenzae 3655]
gi|145634362|ref|ZP_01790072.1| ribosome-binding factor A [Haemophilus influenzae PittAA]
gi|145637806|ref|ZP_01793455.1| ribosome-binding factor A [Haemophilus influenzae PittHH]
gi|145641331|ref|ZP_01796910.1| ribosome-binding factor A [Haemophilus influenzae R3021]
gi|148825872|ref|YP_001290625.1| ribosome-binding factor A [Haemophilus influenzae PittEE]
gi|229845103|ref|ZP_04465238.1| ribosome-binding factor A [Haemophilus influenzae 6P18H1]
gi|229846816|ref|ZP_04466923.1| ribosome-binding factor A [Haemophilus influenzae 7P49H1]
gi|260582496|ref|ZP_05850287.1| ribosome-binding factor A [Haemophilus influenzae NT127]
gi|319896989|ref|YP_004135184.1| 30S ribosome binding factor [Haemophilus influenzae F3031]
gi|81335423|sp|Q4QK42|RBFA_HAEI8 RecName: Full=Ribosome-binding factor A
gi|166218442|sp|A5UBU1|RBFA_HAEIE RecName: Full=Ribosome-binding factor A
gi|68058352|gb|AAX88605.1| ribosome-binding factor A [Haemophilus influenzae 86-028NP]
gi|144978858|gb|EDJ88581.1| ribosome-binding factor A [Haemophilus influenzae 22.1-21]
gi|144983708|gb|EDJ91168.1| ribosome-binding factor A [Haemophilus influenzae R3021]
gi|144986084|gb|EDJ92674.1| ribosome-binding factor A [Haemophilus influenzae 3655]
gi|145268342|gb|EDK08336.1| ribosome-binding factor A [Haemophilus influenzae PittAA]
gi|145268999|gb|EDK08953.1| ribosome-binding factor A [Haemophilus influenzae PittHH]
gi|145273874|gb|EDK13741.1| ribosome-binding factor A [Haemophilus influenzae 22.4-21]
gi|148716032|gb|ABQ98242.1| ribosome-binding factor A [Haemophilus influenzae PittEE]
gi|229810305|gb|EEP46024.1| ribosome-binding factor A [Haemophilus influenzae 7P49H1]
gi|229811939|gb|EEP47633.1| ribosome-binding factor A [Haemophilus influenzae 6P18H1]
gi|260094476|gb|EEW78373.1| ribosome-binding factor A [Haemophilus influenzae NT127]
gi|301170027|emb|CBW29631.1| 30s ribosome binding factor [Haemophilus influenzae 10810]
gi|309750835|gb|ADO80819.1| Ribosome binding factor A [Haemophilus influenzae R2866]
gi|309973016|gb|ADO96217.1| Ribosome binding factor A [Haemophilus influenzae R2846]
gi|317432493|emb|CBY80850.1| 30s ribosome binding factor [Haemophilus influenzae F3031]
Length = 128
Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 65/117 (55%), Gaps = 7/117 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
+ +R+ RV +E++ + VIL E +D I ++++S+V +S DL A ++++ D
Sbjct: 2 AREFKRSDRVAQEIQKEIA-VILQREVKDPRIG--MVTVSDVEVSSDLSYAKIFVTFLFD 58
Query: 66 VSP---DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
++ + L +IR +G+++R LR VPE+RF YD SL +++ L+
Sbjct: 59 HDETAIEQGMKGLEKASPYIRSLLGKAMR-LRIVPEIRFIYDQSLVEGMRMSNLVTN 114
>gi|251792717|ref|YP_003007443.1| ribosome-binding factor A [Aggregatibacter aphrophilus NJ8700]
gi|247534110|gb|ACS97356.1| ribosome-binding factor A [Aggregatibacter aphrophilus NJ8700]
Length = 128
Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats.
Identities = 35/117 (29%), Positives = 64/117 (54%), Gaps = 7/117 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
+ +R+ RV +E++ + VIL E +D I ++++S+V +S DL A V+++ D
Sbjct: 2 AREFKRSDRVAQEIQKEIA-VILQREVKDPRIG--MVTVSDVEVSSDLAYAKVFVTFLFD 58
Query: 66 VSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ + L +IR +G+++R LR VPE+RF YD SL +++ L+
Sbjct: 59 HDEQAIAQGMKGLEKAAPYIRTLLGKAMR-LRIVPEIRFIYDQSLVEGMRMSNLVTN 114
>gi|222529044|ref|YP_002572926.1| ribosome-binding factor A [Caldicellulosiruptor bescii DSM 6725]
gi|254789728|sp|B9MR49|RBFA_ANATD RecName: Full=Ribosome-binding factor A
gi|222455891|gb|ACM60153.1| ribosome-binding factor A [Caldicellulosiruptor bescii DSM 6725]
Length = 132
Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats.
Identities = 36/121 (29%), Positives = 63/121 (52%), Gaps = 4/121 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
R+ RV EE++ L +I ++ +D + ++ISI +V MS DLR A VY+S+
Sbjct: 1 MQFERSDRVSEEIKKELSDII-QHDLKDPRLCAELISIVKVNMSKDLRHAKVYVSIFDKD 59
Query: 67 SP--DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPV 124
+ + AL +IR I R + +LR+ PE+ F D S++ +++ ++ IP
Sbjct: 60 KEKVETTMKALENAKPYIRREISRRI-SLRFTPEITFELDDSIEYGARISQILNQLNIPK 118
Query: 125 A 125
Sbjct: 119 E 119
>gi|16273202|ref|NP_439440.1| ribosome-binding factor A [Haemophilus influenzae Rd KW20]
gi|260581410|ref|ZP_05849224.1| ribosome-binding factor A [Haemophilus influenzae RdAW]
gi|1172847|sp|P45141|RBFA_HAEIN RecName: Full=Ribosome-binding factor A
gi|33357151|pdb|1JOS|A Chain A, Ribosome Binding Factor A(Rbfa)
gi|1574747|gb|AAC22937.1| ribosome binding factor A (rbfA) [Haemophilus influenzae Rd KW20]
gi|260091952|gb|EEW75901.1| ribosome-binding factor A [Haemophilus influenzae RdAW]
Length = 128
Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 65/117 (55%), Gaps = 7/117 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
+ +R+ RV +E++ + VIL E +D I ++++S+V +S DL A ++++ D
Sbjct: 2 AREFKRSDRVAQEIQKEIA-VILQREVKDPRIG--MVTVSDVEVSSDLSYAKIFVTFLFD 58
Query: 66 VSP---DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
++ + L +IR +G+++R LR VPE+RF YD SL +++ L+
Sbjct: 59 HDEMAIEQGMKGLEKASPYIRSLLGKAMR-LRIVPEIRFIYDQSLVEGMRMSNLVTN 114
>gi|260914252|ref|ZP_05920725.1| ribosome-binding factor A [Pasteurella dagmatis ATCC 43325]
gi|260631885|gb|EEX50063.1| ribosome-binding factor A [Pasteurella dagmatis ATCC 43325]
Length = 140
Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats.
Identities = 39/132 (29%), Positives = 70/132 (53%), Gaps = 9/132 (6%)
Query: 1 MKNKN-PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVY 59
MK K + +R+ RV +E++ + VIL E +D I ++++S+V +S DL A V+
Sbjct: 1 MKEKQMAREFKRSDRVAQEIQKEIA-VILQREVKDPRIG--MVTVSDVEVSSDLAYAKVF 57
Query: 60 ISLPLDVSP---DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNAL 116
++ D + + L +IR +G+++R LR VPE+RF YD SL +++ L
Sbjct: 58 VTFLFDNDESAIEAGMKGLEKASPYIRSLLGKAMR-LRIVPEIRFIYDRSLIEGMRMSNL 116
Query: 117 MCLPKIPVALEK 128
+ + E+
Sbjct: 117 VTS-VVRQDKER 127
>gi|319892288|ref|YP_004149163.1| Ribosome-binding factor A [Staphylococcus pseudintermedius
HKU10-03]
gi|317161984|gb|ADV05527.1| Ribosome-binding factor A [Staphylococcus pseudintermedius
HKU10-03]
gi|323464615|gb|ADX76768.1| ribosome-binding factor A [Staphylococcus pseudintermedius ED99]
Length = 114
Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats.
Identities = 36/110 (32%), Positives = 63/110 (57%), Gaps = 5/110 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-DVSPD 69
RA RVGE+++ LM +I NN+ +D + ++I++V + DL +A VY+++ D +
Sbjct: 4 RAERVGEQMKKELMDII-NNKLKDPRVG--FLTITDVQPTNDLSLAKVYLTVLGSDKERE 60
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
L FI+ IG+ +R LR VP+L+F YD S++ ++ L+
Sbjct: 61 NTFKGLEKAKGFIKSEIGQRMR-LRIVPDLQFEYDESIEYGNRIERLIQD 109
>gi|168187907|ref|ZP_02622542.1| ribosome-binding factor A [Clostridium botulinum C str. Eklund]
gi|169294249|gb|EDS76382.1| ribosome-binding factor A [Clostridium botulinum C str. Eklund]
Length = 121
Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats.
Identities = 34/112 (30%), Positives = 59/112 (52%), Gaps = 4/112 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-DVSPD 69
R R+ EEV+ + +I ++ D + ++S++ V ++ DLR A V+IS+ D S
Sbjct: 5 RLGRINEEVKKEISNII-RDDIHDPRL-TGMVSVTRVEVTNDLRYAKVFISIFGSDESKA 62
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+ AL + FIR +G ++ LRY PE+ D S++ +N L+ K
Sbjct: 63 ETLEALKSSAGFIRREVGHRVK-LRYTPEIILELDESIEHGMHINDLLSNLK 113
>gi|329123371|ref|ZP_08251935.1| ribosome-binding factor A [Haemophilus aegyptius ATCC 11116]
gi|327470953|gb|EGF16408.1| ribosome-binding factor A [Haemophilus aegyptius ATCC 11116]
Length = 128
Score = 130 bits (329), Expect = 5e-29, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 65/117 (55%), Gaps = 7/117 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
+ +R+ R+ +E++ + VIL E +D I ++++S+V +S DL A ++++ D
Sbjct: 2 AREFKRSDRIAQEIQKEIA-VILQREVKDPRIG--MVTVSDVEVSSDLSYAKIFVTFLFD 58
Query: 66 VSP---DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
++ + L +IR +G+++R LR VPE+RF YD SL +++ L+
Sbjct: 59 HDETAIEQSMKGLEKASPYIRSLLGKAMR-LRIVPEIRFIYDQSLVEGMRMSNLVTN 114
>gi|323705399|ref|ZP_08116974.1| ribosome-binding factor A [Thermoanaerobacterium xylanolyticum
LX-11]
gi|323535301|gb|EGB25077.1| ribosome-binding factor A [Thermoanaerobacterium xylanolyticum
LX-11]
Length = 119
Score = 130 bits (329), Expect = 5e-29, Method: Composition-based stats.
Identities = 36/119 (30%), Positives = 62/119 (52%), Gaps = 4/119 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDVSPD 69
R R+ EE++ + +I E +D IS + SI+++ +S DLR A +YIS+ D
Sbjct: 4 RIGRLSEEIKKEVSQMIF-EEIKDPRISN-MTSITDIEVSKDLRYAKIYISVYGNDDEKK 61
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALEK 128
I L FIR +G+ ++ LRY+PEL F D S++ ++ ++ + +K
Sbjct: 62 NTIEGLKSATGFIRRELGKRIK-LRYIPELIFELDNSIEYGAHISKILKDLDSRESEDK 119
>gi|317129160|ref|YP_004095442.1| ribosome-binding factor A [Bacillus cellulosilyticus DSM 2522]
gi|315474108|gb|ADU30711.1| ribosome-binding factor A [Bacillus cellulosilyticus DSM 2522]
Length = 116
Score = 130 bits (329), Expect = 5e-29, Method: Composition-based stats.
Identities = 32/113 (28%), Positives = 62/113 (54%), Gaps = 5/113 (4%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
++ RA RVGE+++ + +I E +D + I+++ V ++ DL+ AT +I++ D
Sbjct: 1 MSNVRANRVGEQIKKEITEIIQR-EIKDPRVG--FITVTAVDVTGDLQQATAFITVYGDD 57
Query: 67 SPD-RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
++AL FIR IG+ + LR P+L F++D S++ ++ L+
Sbjct: 58 DQRSNTLAALEKAKGFIRSEIGKRI-QLRKTPDLSFKFDESIERGNRIEELLR 109
>gi|240949212|ref|ZP_04753556.1| ribosome-binding factor A [Actinobacillus minor NM305]
gi|240296328|gb|EER46972.1| ribosome-binding factor A [Actinobacillus minor NM305]
Length = 126
Score = 130 bits (329), Expect = 5e-29, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 65/117 (55%), Gaps = 7/117 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
+ +R+ RV +E++ + +IL E +D I ++++S+V +S DL A ++++ D
Sbjct: 2 SREFKRSDRVAQELQKEVA-IILQREVKDPRIG--MVTVSDVEVSRDLAYAKIFVTFLFD 58
Query: 66 VSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ + + L +IR +G+++R LR VPELRF YD SL +++ L+
Sbjct: 59 NDQEAIKQGMKGLEKASPYIRSLVGKAMR-LRIVPELRFIYDESLVEGMRMSNLVSN 114
>gi|167040281|ref|YP_001663266.1| ribosome-binding factor A [Thermoanaerobacter sp. X514]
gi|256750793|ref|ZP_05491678.1| ribosome-binding factor A [Thermoanaerobacter ethanolicus CCSD1]
gi|300914365|ref|ZP_07131681.1| ribosome-binding factor A [Thermoanaerobacter sp. X561]
gi|307724399|ref|YP_003904150.1| ribosome-binding factor A [Thermoanaerobacter sp. X513]
gi|166854521|gb|ABY92930.1| ribosome-binding factor A [Thermoanaerobacter sp. X514]
gi|256750376|gb|EEU63395.1| ribosome-binding factor A [Thermoanaerobacter ethanolicus CCSD1]
gi|300889300|gb|EFK84446.1| ribosome-binding factor A [Thermoanaerobacter sp. X561]
gi|307581460|gb|ADN54859.1| ribosome-binding factor A [Thermoanaerobacter sp. X513]
Length = 119
Score = 130 bits (329), Expect = 5e-29, Method: Composition-based stats.
Identities = 31/108 (28%), Positives = 59/108 (54%), Gaps = 4/108 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDVSPD 69
R R+ EE++ + +IL E +D I + ++SI+++ ++ DLR A VY+S+ +
Sbjct: 4 RNSRLSEEMKREISKMIL-EEIKDPRI-KAMVSITDIEVTKDLRYAKVYVSIYGSEEDKQ 61
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
L +IR IGR ++ +RY PE+ F D S++ ++ ++
Sbjct: 62 ETFEGLKSAAGYIRHEIGRRIK-MRYTPEIIFELDRSIEYGAHISEIL 108
>gi|228474959|ref|ZP_04059687.1| ribosome-binding factor A [Staphylococcus hominis SK119]
gi|314936569|ref|ZP_07843916.1| ribosome-binding factor A [Staphylococcus hominis subsp. hominis
C80]
gi|228270944|gb|EEK12332.1| ribosome-binding factor A [Staphylococcus hominis SK119]
gi|313655188|gb|EFS18933.1| ribosome-binding factor A [Staphylococcus hominis subsp. hominis
C80]
Length = 116
Score = 130 bits (329), Expect = 5e-29, Method: Composition-based stats.
Identities = 35/116 (30%), Positives = 65/116 (56%), Gaps = 5/116 (4%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
++ RA RVGE+++ +M +I NN+ +D + I+I++V ++ DL A V++++ +
Sbjct: 1 MSNMRAERVGEQMKKEVMDII-NNKVKDPRVG--FITITDVELTNDLSQAKVFLTVLGNK 57
Query: 67 SP-DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+ AL+ FI+ +G +R LR VPEL F YD S++ K+ ++
Sbjct: 58 KEVNDTFKALDKAKGFIKSELGSRMR-LRIVPELFFEYDESIEYGNKIEKMIQDLH 112
>gi|251810701|ref|ZP_04825174.1| ribosome-binding factor A [Staphylococcus epidermidis BCM-HMP0060]
gi|293366766|ref|ZP_06613442.1| ribosome-binding factor A [Staphylococcus epidermidis
M23864:W2(grey)]
gi|251805861|gb|EES58518.1| ribosome-binding factor A [Staphylococcus epidermidis BCM-HMP0060]
gi|291319067|gb|EFE59437.1| ribosome-binding factor A [Staphylococcus epidermidis
M23864:W2(grey)]
Length = 127
Score = 130 bits (329), Expect = 5e-29, Method: Composition-based stats.
Identities = 38/118 (32%), Positives = 67/118 (56%), Gaps = 5/118 (4%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
+K N+ RA RVGE+++ +M I+NN+ +D + ++I++V ++ DL A VY+
Sbjct: 6 IKRGEMMNNIRAERVGEQMKQEIMD-IVNNKVKDPRVG--FLTITDVELTNDLSQAKVYL 62
Query: 61 SLPL-DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
++ D D AL+ FI+ +G +R LR +PEL F YD S++ K+ ++
Sbjct: 63 TVLGNDKEVDNTFKALHKATGFIKSELGSRMR-LRIIPELTFEYDESIEYGNKIERMI 119
>gi|85710525|ref|ZP_01041589.1| ribosome-binding factor A [Erythrobacter sp. NAP1]
gi|85687703|gb|EAQ27708.1| ribosome-binding factor A [Erythrobacter sp. NAP1]
Length = 142
Score = 130 bits (329), Expect = 5e-29, Method: Composition-based stats.
Identities = 42/126 (33%), Positives = 68/126 (53%), Gaps = 5/126 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
+ S R L+VGE VR L ++ E D ++S I+++EV M+ DLR AT Y+ L
Sbjct: 11 QQSVRVLKVGERVRHILSELLARQEVHDEVVSASNIAVTEVRMTPDLRHATAYVKPLLAA 70
Query: 67 SPD----RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
P V+ AL N F++ + + L L++ P+L+FR D S ++ AL+ PK+
Sbjct: 71 GPKISDADVVHALRQNTAFLQREVAKRL-GLKFAPKLKFRSDESFAEADRIEALLRDPKV 129
Query: 123 PVALEK 128
L++
Sbjct: 130 ARDLDE 135
>gi|223042080|ref|ZP_03612256.1| ribosome-binding factor A [Actinobacillus minor 202]
gi|223017155|gb|EEF15591.1| ribosome-binding factor A [Actinobacillus minor 202]
Length = 126
Score = 130 bits (329), Expect = 5e-29, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 65/117 (55%), Gaps = 7/117 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
+ +R+ RV +E++ + +IL E +D I ++++S+V +S DL A ++++ D
Sbjct: 2 SREFKRSDRVAQELQKEVA-IILQREVKDPRIG--MVTVSDVEVSRDLAYAKIFVTFLFD 58
Query: 66 VSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ + + L +IR +G+++R LR VPELRF YD SL +++ L+
Sbjct: 59 NDQEAIKQGMKGLEKASPYIRSLVGKAMR-LRIVPELRFIYDESLVEGMRMSNLVSN 114
>gi|228998587|ref|ZP_04158174.1| Ribosome-binding factor A [Bacillus mycoides Rock3-17]
gi|229006087|ref|ZP_04163775.1| Ribosome-binding factor A [Bacillus mycoides Rock1-4]
gi|228755163|gb|EEM04520.1| Ribosome-binding factor A [Bacillus mycoides Rock1-4]
gi|228761055|gb|EEM10014.1| Ribosome-binding factor A [Bacillus mycoides Rock3-17]
Length = 111
Score = 130 bits (329), Expect = 5e-29, Method: Composition-based stats.
Identities = 31/105 (29%), Positives = 58/105 (55%), Gaps = 5/105 (4%)
Query: 15 VGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV-SPDRVIS 73
+GE+++ L +I + +D I +++++V +S DL++A VYIS+ D + +
Sbjct: 1 MGEQMKKELGEIISR-KIKDPRIG--FVTVTDVQVSGDLQIAKVYISVLGDEQQKENTLK 57
Query: 74 ALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
L FIR IG+ +R LR PE+ F +D S+ +++ L+
Sbjct: 58 GLAKAKGFIRAEIGQRIR-LRKTPEITFEFDESIAYGHRIDTLLH 101
>gi|255655323|ref|ZP_05400732.1| ribosome-binding factor A [Clostridium difficile QCD-23m63]
gi|296451308|ref|ZP_06893048.1| ribosome-binding factor A [Clostridium difficile NAP08]
gi|296880340|ref|ZP_06904303.1| ribosome-binding factor A [Clostridium difficile NAP07]
gi|296259914|gb|EFH06769.1| ribosome-binding factor A [Clostridium difficile NAP08]
gi|296428581|gb|EFH14465.1| ribosome-binding factor A [Clostridium difficile NAP07]
Length = 126
Score = 130 bits (329), Expect = 5e-29, Method: Composition-based stats.
Identities = 30/112 (26%), Positives = 65/112 (58%), Gaps = 4/112 (3%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS 67
+ R R+ EE+R + +++N +D I ++S+++V ++ DLR A VY+S+
Sbjct: 3 SYNRTRRISEEIRKVVSTMLING-VKDPRI-TSMVSVTDVEVTNDLRYAYVYVSILGG-D 59
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ ++ L +IR +G++++ LRY+PE+ F+ D S++ +++L+
Sbjct: 60 EESTLTGLKSAGGYIRREVGKNIK-LRYIPEIVFKIDDSIEKGMYMDSLIKR 110
>gi|300721539|ref|YP_003710814.1| ribosome-binding factor, role in processing of 10S rRNA
[Xenorhabdus nematophila ATCC 19061]
gi|297628031|emb|CBJ88580.1| ribosome-binding factor, role in processing of 10S rRNA
[Xenorhabdus nematophila ATCC 19061]
Length = 136
Score = 130 bits (329), Expect = 6e-29, Method: Composition-based stats.
Identities = 37/130 (28%), Positives = 64/130 (49%), Gaps = 12/130 (9%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL- 64
++ R RV +E++ + +IL E +D I + ++S V +S DL A V+++
Sbjct: 2 ARDFSRTQRVAQEMQKEIA-IILQREIKDPRIG--MATVSGVEVSRDLAYAKVFVTFLNV 58
Query: 65 ------DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
I ALN FIR +G+++R LR VPEL F YD+SL +++ L+
Sbjct: 59 LVEGHDSDQVKEGIKALNDASGFIRSLLGKAMR-LRIVPELTFSYDSSLVEGMRMSNLVS 117
Query: 119 LPKIPVALEK 128
+ ++
Sbjct: 118 N-VVKNDEQR 126
>gi|319776233|ref|YP_004138721.1| 30s ribosome binding factor [Haemophilus influenzae F3047]
gi|317450824|emb|CBY87047.1| 30s ribosome binding factor [Haemophilus influenzae F3047]
Length = 128
Score = 130 bits (328), Expect = 6e-29, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 65/117 (55%), Gaps = 7/117 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
+ +R+ R+ +E++ + VIL E +D I ++++S+V +S DL A ++++ D
Sbjct: 2 AREFKRSDRIAQEIQKEIA-VILQREVKDPRIG--MVTVSDVEVSSDLSYAKIFVTFLFD 58
Query: 66 VSP---DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
++ + L +IR +G+++R LR VPE+RF YD SL +++ L+
Sbjct: 59 HDETVIEQSMKGLEKASPYIRSLLGKAMR-LRIVPEIRFIYDQSLVEGMRMSNLVTN 114
>gi|319401440|gb|EFV89650.1| ribosome-binding factor A [Staphylococcus epidermidis FRI909]
gi|329724355|gb|EGG60867.1| ribosome-binding factor A [Staphylococcus epidermidis VCU144]
Length = 116
Score = 130 bits (328), Expect = 6e-29, Method: Composition-based stats.
Identities = 37/116 (31%), Positives = 65/116 (56%), Gaps = 5/116 (4%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-D 65
N+ RA RVGE+++ +M I+NN+ +D + ++I++V ++ DL A VY+++ D
Sbjct: 1 MNNIRAERVGEQMKQEIMD-IVNNKVKDPRVG--FLTITDVELTNDLSQAKVYLTVLGND 57
Query: 66 VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
D AL+ FI+ +G +R LR +PEL F YD S++ K+ ++
Sbjct: 58 KEVDNTFKALHKATGFIKSELGSRMR-LRIIPELTFEYDESIEYGNKIERMIQDLH 112
>gi|95929625|ref|ZP_01312367.1| ribosome-binding factor A [Desulfuromonas acetoxidans DSM 684]
gi|95134322|gb|EAT15979.1| ribosome-binding factor A [Desulfuromonas acetoxidans DSM 684]
Length = 119
Score = 130 bits (328), Expect = 6e-29, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 64/121 (52%), Gaps = 5/121 (4%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV-S 67
++R RV E++ + ++L +D + ++I+ V +S DLR A ++ ++ +
Sbjct: 3 TQRTYRVAEQIHKEISDIMLRG-LRDPRVG--FVTITSVDISSDLRHAKIFFTVMGEEAD 59
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALE 127
++ L+ + F+R +G+ ++ LR+VP+L F+YDTS+ + L+ I +
Sbjct: 60 AEKTQQGLDSAVPFLRRELGKRMK-LRHVPDLVFKYDTSIAYGSHIEELLKEAGITHDDD 118
Query: 128 K 128
+
Sbjct: 119 E 119
>gi|312134899|ref|YP_004002237.1| ribosome-binding factor a [Caldicellulosiruptor owensensis OL]
gi|311774950|gb|ADQ04437.1| ribosome-binding factor A [Caldicellulosiruptor owensensis OL]
Length = 133
Score = 130 bits (328), Expect = 6e-29, Method: Composition-based stats.
Identities = 37/122 (30%), Positives = 63/122 (51%), Gaps = 4/122 (3%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS 67
R+ RV EE++ L +I +E +D + ++ISI +V MS DLR A VY+S+
Sbjct: 3 QFERSDRVSEEIKKELSDII-QHELKDPRLCAELISIVKVNMSKDLRHAKVYVSIFDKDK 61
Query: 68 P--DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
+ + AL +IR I R + +LR+ PE+ F D S++ +++ ++ I
Sbjct: 62 EKVESTMKALENAKPYIRREISRRI-SLRFTPEITFELDDSIEYGARISQILNQLNISKE 120
Query: 126 LE 127
E
Sbjct: 121 DE 122
>gi|302872112|ref|YP_003840748.1| ribosome-binding factor A [Caldicellulosiruptor obsidiansis OB47]
gi|302574971|gb|ADL42762.1| ribosome-binding factor A [Caldicellulosiruptor obsidiansis OB47]
Length = 132
Score = 130 bits (328), Expect = 6e-29, Method: Composition-based stats.
Identities = 35/121 (28%), Positives = 62/121 (51%), Gaps = 4/121 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
R+ RV EE++ L +I +E +D + ++IS+ +V MS DLR A VY+S+
Sbjct: 1 MQFERSDRVSEEIKKELSDII-QHELKDPRLCAELISVVKVNMSKDLRYAKVYVSIFDKD 59
Query: 67 SP--DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPV 124
+ + AL +IR I R + +LR+ PE+ F D S++ +++ ++ I
Sbjct: 60 KEKVESTMKALENAKPYIRREISRRI-SLRFTPEITFELDDSIEYGARISQILNQLNISK 118
Query: 125 A 125
Sbjct: 119 E 119
>gi|70726645|ref|YP_253559.1| ribosome-binding factor A [Staphylococcus haemolyticus JCSC1435]
gi|123660054|sp|Q4L5X2|RBFA_STAHJ RecName: Full=Ribosome-binding factor A
gi|68447369|dbj|BAE04953.1| ribosome-binding factor A [Staphylococcus haemolyticus JCSC1435]
Length = 116
Score = 130 bits (328), Expect = 6e-29, Method: Composition-based stats.
Identities = 37/116 (31%), Positives = 64/116 (55%), Gaps = 5/116 (4%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
N+ RA RVGE+++ +M I+NN+ +D + I+I++V ++ DL A VY+++
Sbjct: 1 MNNMRAERVGEQMKKEIMD-IVNNKVKDPRVG--FITITDVDLTNDLSQAKVYLTVLGSE 57
Query: 67 SP-DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+ AL+ FI+ +G +R LR VPEL F YD S++ K+ ++
Sbjct: 58 KEVNDTFKALDKAKGFIKSELGSRMR-LRIVPELFFEYDESIEYGNKIEKMIQDLH 112
>gi|326389434|ref|ZP_08211001.1| ribosome-binding factor A [Thermoanaerobacter ethanolicus JW 200]
gi|325994439|gb|EGD52864.1| ribosome-binding factor A [Thermoanaerobacter ethanolicus JW 200]
Length = 119
Score = 130 bits (328), Expect = 6e-29, Method: Composition-based stats.
Identities = 31/109 (28%), Positives = 59/109 (54%), Gaps = 4/109 (3%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDVSP 68
R R+ EE++ + +IL E +D I + ++SI+++ ++ DLR A VY+S+ +
Sbjct: 3 SRNSRLSEEMKREISKMIL-EEIKDPRI-KAMVSITDIEVTKDLRYAKVYVSIYGSEEDK 60
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
L +IR IGR ++ +RY PE+ F D S++ ++ ++
Sbjct: 61 QETFEGLKSAAGYIRHEIGRRIK-MRYTPEIIFELDRSIEYGAHISEIL 108
>gi|16800432|ref|NP_470700.1| ribosome-binding factor A [Listeria innocua Clip11262]
gi|20978611|sp|Q92C27|RBFA_LISIN RecName: Full=Ribosome-binding factor A
gi|16413837|emb|CAC96595.1| rbfA [Listeria innocua Clip11262]
Length = 114
Score = 130 bits (328), Expect = 7e-29, Method: Composition-based stats.
Identities = 34/110 (30%), Positives = 60/110 (54%), Gaps = 5/110 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-DVSPD 69
RA RV E+++ L ++ N + +D + ++++ V ++ DL+ A V+IS+ D +
Sbjct: 4 RANRVSEQMKKELGDIL-NRKIKDPRLG--FVTVTGVDVTGDLQEAKVFISILGTDKEKE 60
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ AL FIR IGR +R LR VPE+ F D S+ +++ L+
Sbjct: 61 NTLLALEKAHGFIRSEIGRRIR-LRKVPEMSFEIDNSIAYGNRIDELLRD 109
>gi|312622700|ref|YP_004024313.1| ribosome-binding factor a [Caldicellulosiruptor kronotskyensis
2002]
gi|312793239|ref|YP_004026162.1| ribosome-binding factor a [Caldicellulosiruptor kristjanssonii
177R1B]
gi|312876949|ref|ZP_07736924.1| ribosome-binding factor A [Caldicellulosiruptor lactoaceticus 6A]
gi|311796264|gb|EFR12618.1| ribosome-binding factor A [Caldicellulosiruptor lactoaceticus 6A]
gi|312180379|gb|ADQ40549.1| ribosome-binding factor A [Caldicellulosiruptor kristjanssonii
177R1B]
gi|312203167|gb|ADQ46494.1| ribosome-binding factor A [Caldicellulosiruptor kronotskyensis
2002]
Length = 132
Score = 130 bits (328), Expect = 7e-29, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 62/121 (51%), Gaps = 4/121 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
R+ RV EE++ L +I ++ +D + ++ISI +V MS DLR A VY+S+
Sbjct: 1 MQFERSDRVSEEIKKELSDII-QHDLKDPRLCAELISIVKVNMSKDLRHAKVYVSIFDKD 59
Query: 67 SP--DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPV 124
+ + AL +IR I + + +LR+ PE+ F D S++ +++ ++ I
Sbjct: 60 KEKVESTMKALENAKPYIRREISKRI-SLRFTPEITFELDNSIEYGARISQILNQLNISK 118
Query: 125 A 125
Sbjct: 119 E 119
>gi|75908877|ref|YP_323173.1| ribosome-binding factor A [Anabaena variabilis ATCC 29413]
gi|123609303|sp|Q3M9Q8|RBFA_ANAVT RecName: Full=Ribosome-binding factor A
gi|75702602|gb|ABA22278.1| ribosome-binding factor A [Anabaena variabilis ATCC 29413]
Length = 133
Score = 130 bits (328), Expect = 7e-29, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 64/121 (52%), Gaps = 3/121 (2%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-DV 66
+RR RV E ++ + +++N +D + ++S+++V +S DL+ A +Y+S+ +
Sbjct: 3 TNRRVSRVAELIKREVSQMLING-IKDDRVGTGMVSVTDVDVSGDLQHAKIYVSIYGTEE 61
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVAL 126
+ ++ L F+R +G +R LR PE+ F D S++ K+ L+ + +L
Sbjct: 62 AKAETMAGLKSATGFVRSELGARVR-LRRTPEVTFIEDRSIERGTKVLTLLNKLENARSL 120
Query: 127 E 127
+
Sbjct: 121 D 121
>gi|261867881|ref|YP_003255803.1| ribosome-binding factor A [Aggregatibacter actinomycetemcomitans
D11S-1]
gi|261413213|gb|ACX82584.1| ribosome-binding factor A [Aggregatibacter actinomycetemcomitans
D11S-1]
Length = 128
Score = 130 bits (328), Expect = 7e-29, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 63/117 (53%), Gaps = 7/117 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
+ +R+ RV +E++ + VIL E +D I ++++S+V +S DL A V+++ D
Sbjct: 2 AREFKRSDRVAQEIQKEIA-VILQREVKDPRIG--MVTVSDVDVSSDLAYAKVFVTFLFD 58
Query: 66 VSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ + L +IR +G+++R L VPE+RF YD SL +++ L+
Sbjct: 59 HDEQAIAQGMKGLEKAAPYIRTLLGKAMR-LWIVPEIRFIYDQSLVEGMRMSNLVTN 114
>gi|32033693|ref|ZP_00133988.1| COG0858: Ribosome-binding factor A [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|126208122|ref|YP_001053347.1| ribosome-binding factor A [Actinobacillus pleuropneumoniae L20]
gi|165976052|ref|YP_001651645.1| ribosome-binding factor A [Actinobacillus pleuropneumoniae serovar
3 str. JL03]
gi|190149950|ref|YP_001968475.1| ribosome-binding factor A [Actinobacillus pleuropneumoniae serovar
7 str. AP76]
gi|303249645|ref|ZP_07335850.1| ribosome-binding factor A [Actinobacillus pleuropneumoniae serovar
6 str. Femo]
gi|303253710|ref|ZP_07339847.1| ribosome-binding factor A [Actinobacillus pleuropneumoniae serovar
2 str. 4226]
gi|307245496|ref|ZP_07527583.1| Ribosome-binding factor A [Actinobacillus pleuropneumoniae serovar
1 str. 4074]
gi|307247610|ref|ZP_07529653.1| Ribosome-binding factor A [Actinobacillus pleuropneumoniae serovar
2 str. S1536]
gi|307249839|ref|ZP_07531815.1| Ribosome-binding factor A [Actinobacillus pleuropneumoniae serovar
4 str. M62]
gi|307252191|ref|ZP_07534089.1| Ribosome-binding factor A [Actinobacillus pleuropneumoniae serovar
6 str. Femo]
gi|307254450|ref|ZP_07536287.1| Ribosome-binding factor A [Actinobacillus pleuropneumoniae serovar
9 str. CVJ13261]
gi|307256662|ref|ZP_07538441.1| Ribosome-binding factor A [Actinobacillus pleuropneumoniae serovar
10 str. D13039]
gi|307258909|ref|ZP_07540640.1| Ribosome-binding factor A [Actinobacillus pleuropneumoniae serovar
11 str. 56153]
gi|307261097|ref|ZP_07542776.1| Ribosome-binding factor A [Actinobacillus pleuropneumoniae serovar
12 str. 1096]
gi|307263278|ref|ZP_07544896.1| Ribosome-binding factor A [Actinobacillus pleuropneumoniae serovar
13 str. N273]
gi|166218414|sp|A3N006|RBFA_ACTP2 RecName: Full=Ribosome-binding factor A
gi|238687490|sp|B0BNR6|RBFA_ACTPJ RecName: Full=Ribosome-binding factor A
gi|238692383|sp|B3H164|RBFA_ACTP7 RecName: Full=Ribosome-binding factor A
gi|126096914|gb|ABN73742.1| ribosome-binding factor A [Actinobacillus pleuropneumoniae serovar
5b str. L20]
gi|165876153|gb|ABY69201.1| ribosome binding factor A [Actinobacillus pleuropneumoniae serovar
3 str. JL03]
gi|189915081|gb|ACE61333.1| ribosome-binding factor A [Actinobacillus pleuropneumoniae serovar
7 str. AP76]
gi|302647435|gb|EFL77654.1| ribosome-binding factor A [Actinobacillus pleuropneumoniae serovar
2 str. 4226]
gi|302651457|gb|EFL81608.1| ribosome-binding factor A [Actinobacillus pleuropneumoniae serovar
6 str. Femo]
gi|306853555|gb|EFM85773.1| Ribosome-binding factor A [Actinobacillus pleuropneumoniae serovar
1 str. 4074]
gi|306855880|gb|EFM88040.1| Ribosome-binding factor A [Actinobacillus pleuropneumoniae serovar
2 str. S1536]
gi|306858141|gb|EFM90221.1| Ribosome-binding factor A [Actinobacillus pleuropneumoniae serovar
4 str. M62]
gi|306860335|gb|EFM92350.1| Ribosome-binding factor A [Actinobacillus pleuropneumoniae serovar
6 str. Femo]
gi|306862591|gb|EFM94548.1| Ribosome-binding factor A [Actinobacillus pleuropneumoniae serovar
9 str. CVJ13261]
gi|306864710|gb|EFM96614.1| Ribosome-binding factor A [Actinobacillus pleuropneumoniae serovar
10 str. D13039]
gi|306866933|gb|EFM98790.1| Ribosome-binding factor A [Actinobacillus pleuropneumoniae serovar
11 str. 56153]
gi|306869229|gb|EFN01027.1| Ribosome-binding factor A [Actinobacillus pleuropneumoniae serovar
12 str. 1096]
gi|306871340|gb|EFN03066.1| Ribosome-binding factor A [Actinobacillus pleuropneumoniae serovar
13 str. N273]
Length = 127
Score = 130 bits (328), Expect = 7e-29, Method: Composition-based stats.
Identities = 35/117 (29%), Positives = 65/117 (55%), Gaps = 7/117 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
+ +R+ RV +E++ + VIL E +D I ++++S+V +S DL A ++++ D
Sbjct: 2 SREFKRSDRVAQELQKEIA-VILQREVKDPRIG--MVTVSDVEVSRDLAYAKIFVTFLFD 58
Query: 66 VSP---DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
++ + L +IR +G+++R LR VPELRF YD SL +++ L+
Sbjct: 59 NDQSVIEQGMKGLEKASPYIRSLVGKAMR-LRIVPELRFIYDQSLVEGMRMSNLVSN 114
>gi|90409002|ref|ZP_01217132.1| ribosome-binding factor A [Psychromonas sp. CNPT3]
gi|90309887|gb|EAS38042.1| ribosome-binding factor A [Psychromonas sp. CNPT3]
Length = 134
Score = 130 bits (328), Expect = 7e-29, Method: Composition-based stats.
Identities = 36/125 (28%), Positives = 65/125 (52%), Gaps = 7/125 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP-- 63
K R RV ++V+ L ++ E +D I ++++S V ++ DL A V+++
Sbjct: 2 AKEYSRTSRVSQQVQKELARILQQ-EVKDPRIG--MVTVSGVDITRDLAYAKVFVTFLTI 58
Query: 64 LDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIP 123
D + D + LN +IR +G+++R LR VPE+RF +D +L +L+ L+ +
Sbjct: 59 GDQTNDESLEGLNSAAGYIRRLLGKAMR-LRIVPEVRFCFDETLTEGLRLSELVSG-AVK 116
Query: 124 VALEK 128
EK
Sbjct: 117 KDKEK 121
>gi|52425497|ref|YP_088634.1| ribosome-binding factor A [Mannheimia succiniciproducens MBEL55E]
gi|61214861|sp|Q65SL1|RBFA_MANSM RecName: Full=Ribosome-binding factor A
gi|52307549|gb|AAU38049.1| RbfA protein [Mannheimia succiniciproducens MBEL55E]
Length = 131
Score = 130 bits (328), Expect = 7e-29, Method: Composition-based stats.
Identities = 36/126 (28%), Positives = 69/126 (54%), Gaps = 8/126 (6%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
+ +R+ RV +E++ + VIL E +D I ++++S+V +S DL A ++++ +
Sbjct: 2 SREFKRSDRVAQELQKEIA-VILQREVKDPRIG--MVTVSDVEVSRDLAYAKIFVTFLFN 58
Query: 66 VSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
+ + + AL +IR +G+++R LR VPELRF YD SL +++ L+ +
Sbjct: 59 NDDEAIKQGMKALEKAAPYIRSLVGKAMR-LRIVPELRFEYDRSLVEGMRMSNLVTN-VV 116
Query: 123 PVALEK 128
E+
Sbjct: 117 RSDKER 122
>gi|301156204|emb|CBW15675.1| 30s ribosome binding factor [Haemophilus parainfluenzae T3T1]
Length = 128
Score = 130 bits (328), Expect = 7e-29, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 64/117 (54%), Gaps = 7/117 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
+ +R+ RV +E++ + ++ E +D I ++++S+V +S DL A V+++ D
Sbjct: 2 AREFKRSDRVAQELQKEIATILQR-EVKDPRIG--MVTVSDVEVSSDLAYAKVFVTFLFD 58
Query: 66 VSP---DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
++ + L +IR +G+++R LR VPE+RF YD SL +++ L+
Sbjct: 59 HDEVAIEQGMKGLEKAAPYIRSLVGKAMR-LRIVPEIRFFYDQSLVEGMRMSNLVTN 114
>gi|83589899|ref|YP_429908.1| ribosome-binding factor A [Moorella thermoacetica ATCC 39073]
gi|123524645|sp|Q2RJM4|RBFA_MOOTA RecName: Full=Ribosome-binding factor A
gi|83572813|gb|ABC19365.1| ribosome-binding factor A [Moorella thermoacetica ATCC 39073]
Length = 122
Score = 130 bits (327), Expect = 7e-29, Method: Composition-based stats.
Identities = 34/110 (30%), Positives = 59/110 (53%), Gaps = 3/110 (2%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS-PD 69
R RV EE++ + +I +E +D + ++S++ V +S D A VY+S+ D +
Sbjct: 6 RNQRVAEEMKKEIARII-RDEVKDPRLEAGLVSVTGVELSNDRHYAKVYVSIYGDEEARN 64
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ + L FIR IG+ L +LRY PE+ F+ D S++ +N L+
Sbjct: 65 QAMEGLARATSFIRREIGQRL-SLRYTPEITFKLDVSIEHGDHINRLLAR 113
>gi|315634098|ref|ZP_07889387.1| ribosome-binding factor A [Aggregatibacter segnis ATCC 33393]
gi|315477348|gb|EFU68091.1| ribosome-binding factor A [Aggregatibacter segnis ATCC 33393]
Length = 128
Score = 130 bits (327), Expect = 8e-29, Method: Composition-based stats.
Identities = 36/117 (30%), Positives = 65/117 (55%), Gaps = 7/117 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
+ +R+ RV +E++ + VIL E +D IS ++++S+V +S DL A V+++ D
Sbjct: 2 AREFKRSDRVAQEIQKEIA-VILQREVKDPRIS--MVTVSDVEVSSDLAYAKVFVTFLFD 58
Query: 66 VSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ + L +IR +G+++R LR VPE+RF YD SL +++ L+
Sbjct: 59 HDEQAIAQGMKGLEKAAPYIRTLLGKAMR-LRIVPEIRFIYDQSLVEGMRMSNLVTN 114
>gi|325578300|ref|ZP_08148435.1| ribosome-binding factor A [Haemophilus parainfluenzae ATCC 33392]
gi|325160036|gb|EGC72165.1| ribosome-binding factor A [Haemophilus parainfluenzae ATCC 33392]
Length = 128
Score = 130 bits (327), Expect = 8e-29, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 64/117 (54%), Gaps = 7/117 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
+ +R+ RV +E++ + +IL E +D I ++++S+V +S DL A V+++ D
Sbjct: 2 AREFKRSDRVAQELQKEIA-IILQREVKDPRIG--MVTVSDVEVSSDLAYAKVFVTFLFD 58
Query: 66 VSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ + L +IR +G+++R LR VPE+RF YD SL +++ L+
Sbjct: 59 HDEVAIAQGMKGLEKAAPYIRSLVGKAMR-LRIVPEIRFFYDQSLVEGMRMSNLVTN 114
>gi|312143663|ref|YP_003995109.1| ribosome-binding factor A [Halanaerobium sp. 'sapolanicus']
gi|311904314|gb|ADQ14755.1| ribosome-binding factor A [Halanaerobium sp. 'sapolanicus']
Length = 127
Score = 130 bits (327), Expect = 8e-29, Method: Composition-based stats.
Identities = 33/113 (29%), Positives = 65/113 (57%), Gaps = 5/113 (4%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-DVSP 68
+RA+RVGE ++ + +IL E +D I+ +S+++V +S DLR A V++S+ D
Sbjct: 4 KRAIRVGELLKEEISQIILR-EMKDPRIA--FVSVTDVKVSGDLRHAKVFVSVFGTDKEK 60
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+ + L+ +IR +G ++ + + PE+ FRYD S++ ++ ++ K
Sbjct: 61 EETMEGLDKATGYIRKLVGERVK-IHHTPEIIFRYDDSIEQGVHISKIINNLK 112
>gi|326204067|ref|ZP_08193928.1| ribosome-binding factor A [Clostridium papyrosolvens DSM 2782]
gi|325985834|gb|EGD46669.1| ribosome-binding factor A [Clostridium papyrosolvens DSM 2782]
Length = 117
Score = 130 bits (327), Expect = 9e-29, Method: Composition-based stats.
Identities = 36/112 (32%), Positives = 59/112 (52%), Gaps = 4/112 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS-PD 69
R +R+ EEV+ + +I N+ +D + ++SI ++ DLR A V++S+ +
Sbjct: 4 RIIRISEEVKKEISNII-QNDIKDPRLPS-MVSIVSCNVTKDLRYAKVFVSVLGNEEQKK 61
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
ISAL FIR +G + LRY PE+ F DTS++ +N L+ K
Sbjct: 62 NAISALKSAAGFIRRELGHRV-QLRYTPEIHFELDTSIEHGIHINKLLDDAK 112
>gi|16803367|ref|NP_464852.1| ribosome-binding factor A [Listeria monocytogenes EGD-e]
gi|46907553|ref|YP_013942.1| ribosome-binding factor A [Listeria monocytogenes serotype 4b str.
F2365]
gi|47094120|ref|ZP_00231843.1| ribosome-binding factor A [Listeria monocytogenes str. 4b H7858]
gi|47095912|ref|ZP_00233515.1| ribosome-binding factor A [Listeria monocytogenes str. 1/2a F6854]
gi|217964526|ref|YP_002350204.1| ribosome-binding factor A [Listeria monocytogenes HCC23]
gi|224499908|ref|ZP_03668257.1| ribosome-binding factor A [Listeria monocytogenes Finland 1988]
gi|224501730|ref|ZP_03670037.1| ribosome-binding factor A [Listeria monocytogenes FSL R2-561]
gi|226223928|ref|YP_002758035.1| ribosome-binding factor A [Listeria monocytogenes Clip81459]
gi|254824614|ref|ZP_05229615.1| ribosome-binding factor A [Listeria monocytogenes FSL J1-194]
gi|254828687|ref|ZP_05233374.1| ribosome-binding factor A [Listeria monocytogenes FSL N3-165]
gi|254829916|ref|ZP_05234571.1| ribosome-binding factor A [Listeria monocytogenes 10403S]
gi|254852623|ref|ZP_05241971.1| ribosome-binding factor A [Listeria monocytogenes FSL R2-503]
gi|254898508|ref|ZP_05258432.1| ribosome-binding factor A [Listeria monocytogenes J0161]
gi|254912001|ref|ZP_05262013.1| ribosome-binding factor A [Listeria monocytogenes J2818]
gi|254932358|ref|ZP_05265717.1| ribosome-binding factor A [Listeria monocytogenes HPB2262]
gi|254936328|ref|ZP_05268025.1| ribosome-binding factor A [Listeria monocytogenes F6900]
gi|254992775|ref|ZP_05274965.1| ribosome-binding factor A [Listeria monocytogenes FSL J2-064]
gi|255026684|ref|ZP_05298670.1| ribosome-binding factor A [Listeria monocytogenes FSL J2-003]
gi|255030035|ref|ZP_05301986.1| ribosome-binding factor A [Listeria monocytogenes LO28]
gi|255520239|ref|ZP_05387476.1| ribosome-binding factor A [Listeria monocytogenes FSL J1-175]
gi|284801712|ref|YP_003413577.1| ribosome-binding factor A [Listeria monocytogenes 08-5578]
gi|284994854|ref|YP_003416622.1| ribosome-binding factor A [Listeria monocytogenes 08-5923]
gi|289434608|ref|YP_003464480.1| hypothetical protein lse_1243 [Listeria seeligeri serovar 1/2b str.
SLCC3954]
gi|290893562|ref|ZP_06556545.1| ribosome-binding factor A [Listeria monocytogenes FSL J2-071]
gi|300765433|ref|ZP_07075415.1| ribosome-binding factor A [Listeria monocytogenes FSL N1-017]
gi|315282183|ref|ZP_07870646.1| ribosome-binding factor A [Listeria marthii FSL S4-120]
gi|315302983|ref|ZP_07873702.1| ribosome-binding factor A [Listeria ivanovii FSL F6-596]
gi|20978582|sp|Q8Y7F4|RBFA_LISMO RecName: Full=Ribosome-binding factor A
gi|61215089|sp|Q71ZZ5|RBFA_LISMF RecName: Full=Ribosome-binding factor A
gi|254789754|sp|B8DG00|RBFA_LISMH RecName: Full=Ribosome-binding factor A
gi|259552014|sp|C1L2N3|RBFA_LISMC RecName: Full=Ribosome-binding factor A
gi|16410743|emb|CAC99405.1| rbfA [Listeria monocytogenes EGD-e]
gi|46880821|gb|AAT04119.1| ribosome-binding factor A [Listeria monocytogenes serotype 4b str.
F2365]
gi|47015658|gb|EAL06588.1| ribosome-binding factor A [Listeria monocytogenes str. 1/2a F6854]
gi|47017505|gb|EAL08315.1| ribosome-binding factor A [Listeria monocytogenes str. 4b H7858]
gi|217333796|gb|ACK39590.1| ribosome-binding factor A [Listeria monocytogenes HCC23]
gi|225876390|emb|CAS05099.1| Putative ribosome-binding factor A [Listeria monocytogenes serotype
4b str. CLIP 80459]
gi|258601091|gb|EEW14416.1| ribosome-binding factor A [Listeria monocytogenes FSL N3-165]
gi|258605938|gb|EEW18546.1| ribosome-binding factor A [Listeria monocytogenes FSL R2-503]
gi|258608918|gb|EEW21526.1| ribosome-binding factor A [Listeria monocytogenes F6900]
gi|284057274|gb|ADB68215.1| ribosome-binding factor A [Listeria monocytogenes 08-5578]
gi|284060321|gb|ADB71260.1| ribosome-binding factor A [Listeria monocytogenes 08-5923]
gi|289170852|emb|CBH27394.1| rbfA [Listeria seeligeri serovar 1/2b str. SLCC3954]
gi|290556907|gb|EFD90438.1| ribosome-binding factor A [Listeria monocytogenes FSL J2-071]
gi|293583914|gb|EFF95946.1| ribosome-binding factor A [Listeria monocytogenes HPB2262]
gi|293589965|gb|EFF98299.1| ribosome-binding factor A [Listeria monocytogenes J2818]
gi|293593852|gb|EFG01613.1| ribosome-binding factor A [Listeria monocytogenes FSL J1-194]
gi|300513870|gb|EFK40935.1| ribosome-binding factor A [Listeria monocytogenes FSL N1-017]
gi|307570908|emb|CAR84087.1| rbfA [Listeria monocytogenes L99]
gi|313608974|gb|EFR84720.1| ribosome-binding factor A [Listeria monocytogenes FSL F2-208]
gi|313614169|gb|EFR87850.1| ribosome-binding factor A [Listeria marthii FSL S4-120]
gi|313619123|gb|EFR90915.1| ribosome-binding factor A [Listeria innocua FSL S4-378]
gi|313623913|gb|EFR94023.1| ribosome-binding factor A [Listeria innocua FSL J1-023]
gi|313628651|gb|EFR97065.1| ribosome-binding factor A [Listeria ivanovii FSL F6-596]
gi|313633410|gb|EFS00246.1| ribosome-binding factor A [Listeria seeligeri FSL N1-067]
gi|313638090|gb|EFS03358.1| ribosome-binding factor A [Listeria seeligeri FSL S4-171]
gi|328468610|gb|EGF39610.1| ribosome-binding factor A [Listeria monocytogenes 1816]
gi|328475048|gb|EGF45836.1| ribosome-binding factor A [Listeria monocytogenes 220]
gi|332311770|gb|EGJ24865.1| Ribosome-binding factor A [Listeria monocytogenes str. Scott A]
Length = 114
Score = 130 bits (327), Expect = 9e-29, Method: Composition-based stats.
Identities = 34/110 (30%), Positives = 60/110 (54%), Gaps = 5/110 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-DVSPD 69
RA RV E+++ L ++ N + +D + ++++ V ++ DL+ A V+IS+ D +
Sbjct: 4 RANRVSEQMKKELGDIL-NRKIKDPRLG--FVTVTGVDVTGDLQEAKVFISILGTDKEKE 60
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ AL FIR IGR +R LR VPE+ F D S+ +++ L+
Sbjct: 61 NTLLALAKAHGFIRSEIGRRIR-LRKVPEMSFEIDNSIAYGNRIDELLRD 109
>gi|27467865|ref|NP_764502.1| ribosome-binding factor A [Staphylococcus epidermidis ATCC 12228]
gi|57866760|ref|YP_188419.1| ribosome-binding factor A [Staphylococcus epidermidis RP62A]
gi|282876298|ref|ZP_06285165.1| ribosome-binding factor A [Staphylococcus epidermidis SK135]
gi|29427695|sp|Q8CPG2|RBFA_STAES RecName: Full=Ribosome-binding factor A
gi|61214666|sp|Q5HPS1|RBFA_STAEQ RecName: Full=Ribosome-binding factor A
gi|27315410|gb|AAO04544.1|AE016747_41 ribosome-binding factor A [Staphylococcus epidermidis ATCC 12228]
gi|57637418|gb|AAW54206.1| ribosome-binding factor A [Staphylococcus epidermidis RP62A]
gi|281295323|gb|EFA87850.1| ribosome-binding factor A [Staphylococcus epidermidis SK135]
gi|329736627|gb|EGG72893.1| ribosome-binding factor A [Staphylococcus epidermidis VCU045]
Length = 116
Score = 130 bits (327), Expect = 9e-29, Method: Composition-based stats.
Identities = 37/112 (33%), Positives = 65/112 (58%), Gaps = 5/112 (4%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-D 65
N+ RA RVGE+++ +M I+NN+ +D + ++I++V ++ DL A VY+++ D
Sbjct: 1 MNNIRAERVGEQMKQEIMD-IVNNKVKDPRVG--FLTITDVELTNDLSQAKVYLTVLGND 57
Query: 66 VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
D AL+ FI+ +G +R LR +PEL F YD S++ K+ ++
Sbjct: 58 KEVDNTFKALHKATGFIKSELGSRMR-LRIIPELTFEYDESIEYGNKIERMI 108
>gi|119944580|ref|YP_942260.1| ribosome-binding factor A [Psychromonas ingrahamii 37]
gi|166219396|sp|A1ST46|RBFA_PSYIN RecName: Full=Ribosome-binding factor A
gi|119863184|gb|ABM02661.1| ribosome-binding factor A [Psychromonas ingrahamii 37]
Length = 133
Score = 130 bits (327), Expect = 9e-29, Method: Composition-based stats.
Identities = 34/115 (29%), Positives = 63/115 (54%), Gaps = 6/115 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP-- 63
K R RV ++V+ L ++ E +D I +++IS V ++ DL A V+++
Sbjct: 2 AKEYSRTSRVSQQVQKELARILQQ-EVKDPRIG--MVTISGVDVTRDLAYAKVFVTFLTV 58
Query: 64 LDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
D + D + LN +IR +G+++R LR VPE+RF +D++L +++ L+
Sbjct: 59 GDQTNDESLEGLNAAAGYIRRLLGKAMR-LRIVPEVRFCFDSTLTEGLRISELVS 112
>gi|170754753|ref|YP_001781960.1| ribosome-binding factor A [Clostridium botulinum B1 str. Okra]
gi|229564414|sp|B1II48|RBFA_CLOBK RecName: Full=Ribosome-binding factor A
gi|169119965|gb|ACA43801.1| ribosome-binding factor A [Clostridium botulinum B1 str. Okra]
Length = 120
Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats.
Identities = 34/112 (30%), Positives = 64/112 (57%), Gaps = 4/112 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS-PD 69
RA R+ EEV+ + +I N + +D +S ++S+++V ++ DL+ A VY+S+ + +
Sbjct: 5 RAGRINEEVKKEVSNIIHN-DIKDPRLSA-MVSVTDVDVTKDLKYAKVYVSIFGNEKAKE 62
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+ AL ++ FIR IGR ++ LR PE+ D S++ ++ L+ K
Sbjct: 63 ESLQALKSSVGFIRKEIGRRVK-LRNTPEVIIEVDNSIERGMHIDELLHSIK 113
>gi|73662804|ref|YP_301585.1| ribosome-binding factor A [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
gi|123642449|sp|Q49X58|RBFA_STAS1 RecName: Full=Ribosome-binding factor A
gi|72495319|dbj|BAE18640.1| ribosome-binding factor A [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
Length = 114
Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats.
Identities = 35/112 (31%), Positives = 60/112 (53%), Gaps = 5/112 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS-PD 69
RA RVGE+++ +M I NN+ +D I ++I++V ++ DL +ATVY+++ +
Sbjct: 4 RAERVGEQMKQEIMD-IANNKVKDPRIG--FLTITDVQLTNDLSIATVYLTVLGNEKQKA 60
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
L FI+ +G +R LR +PEL F YD S+ K+ ++
Sbjct: 61 DTFKGLEKAKGFIKSELGSRMR-LRIIPELNFEYDESIDYGNKIERMIQDLH 111
>gi|37523601|ref|NP_926978.1| ribosome binding facror A [Gloeobacter violaceus PCC 7421]
gi|39931738|sp|Q7NE48|RBFA_GLOVI RecName: Full=Ribosome-binding factor A
gi|35214606|dbj|BAC91973.1| ribosome binding facror A [Gloeobacter violaceus PCC 7421]
Length = 129
Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 63/120 (52%), Gaps = 4/120 (3%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
+ R RVGE ++ + ++L + +D + ++S+++V ++ DLR A +++S+
Sbjct: 3 THRPARVGELIKREVSDMLLRGQIKDPRVGAGLVSVTDVEVTGDLRQAKIFVSIFGTPEA 62
Query: 69 DR-VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALE 127
+ + AL F+R IG +R LRY PE+ F D SL+ ++ L+ +I E
Sbjct: 63 QKLTMMALAEVTGFVRQEIGHRIR-LRYTPEIAFVQDRSLERGARITRLI--DEIRAEEE 119
>gi|116872758|ref|YP_849539.1| ribosome-binding factor A [Listeria welshimeri serovar 6b str.
SLCC5334]
gi|123460995|sp|A0AIC8|RBFA_LISW6 RecName: Full=Ribosome-binding factor A
gi|116741636|emb|CAK20760.1| ribosome-binding factor A [Listeria welshimeri serovar 6b str.
SLCC5334]
Length = 114
Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats.
Identities = 34/110 (30%), Positives = 60/110 (54%), Gaps = 5/110 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-DVSPD 69
RA RV E+++ L ++ N + +D + ++++ V ++ DL+ A V+IS+ D +
Sbjct: 4 RANRVSEQMKKELGDIL-NRKIKDPRLG--FVTVTGVDVTGDLQEAKVFISILGTDKEKE 60
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ AL FIR IGR +R LR VPE+ F D S+ +++ L+
Sbjct: 61 NTLLALAKAHGFIRSEIGRRIR-LRKVPEMSFEIDNSIAYGNRIDELLRD 109
>gi|307264916|ref|ZP_07546478.1| ribosome-binding factor A [Thermoanaerobacter wiegelii Rt8.B1]
gi|306920174|gb|EFN50386.1| ribosome-binding factor A [Thermoanaerobacter wiegelii Rt8.B1]
Length = 119
Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats.
Identities = 31/108 (28%), Positives = 59/108 (54%), Gaps = 4/108 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDVSPD 69
R R+ EE++ + +IL E +D I + ++SI+++ ++ DLR A VY+S+ +
Sbjct: 4 RNSRLSEEMKREISKMIL-EEIKDPRI-KAMVSITDIEVTKDLRYAKVYVSIYGSEEDKQ 61
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
L +IR IGR ++ +RY PE+ F D S++ ++ ++
Sbjct: 62 ETFEGLKSAAGYIRHEIGRRIK-MRYTPEIIFELDRSIEYGAYISEIL 108
>gi|322831215|ref|YP_004211242.1| ribosome-binding factor A [Rahnella sp. Y9602]
gi|321166416|gb|ADW72115.1| ribosome-binding factor A [Rahnella sp. Y9602]
Length = 137
Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats.
Identities = 42/131 (32%), Positives = 66/131 (50%), Gaps = 13/131 (9%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL- 64
K R RV +E++ + +IL E +D + + ++S V +S DL A V+++
Sbjct: 2 AKEFSRTQRVSQEMQKEIA-IILQREVKDPRVG--MATVSGVEVSRDLAYAKVFVTFLDV 58
Query: 65 ----DVSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ PDRV I AL FIR IG+++R LR VPEL F YD SL +++ L+
Sbjct: 59 LTTDNHDPDRVKNGIKALQDASGFIRTLIGKAMR-LRVVPELTFAYDNSLVEGMRMSNLV 117
Query: 118 CLPKIPVALEK 128
+ E+
Sbjct: 118 TN-VVKNDAER 127
>gi|118444128|ref|YP_878208.1| ribosome-binding factor A [Clostridium novyi NT]
gi|166218434|sp|A0Q0Q6|RBFA_CLONN RecName: Full=Ribosome-binding factor A
gi|118134584|gb|ABK61628.1| ribosome-binding factor A [Clostridium novyi NT]
Length = 121
Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats.
Identities = 34/112 (30%), Positives = 59/112 (52%), Gaps = 4/112 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-DVSPD 69
R R+ EEV+ + +I ++ D + ++S++ V ++ DLR A V+IS+ D S
Sbjct: 5 RLGRINEEVKKEISNII-RDDIHDPRL-TGMVSVTRVEVTNDLRYAKVFISIFGSDESKT 62
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+ AL + FIR +G ++ LRY PE+ D S++ +N L+ K
Sbjct: 63 ETLEALKSSAGFIRREVGHRVK-LRYTPEILLELDESIEHGMHINDLLSNLK 113
>gi|289423163|ref|ZP_06424978.1| ribosome-binding factor A [Peptostreptococcus anaerobius 653-L]
gi|289156494|gb|EFD05144.1| ribosome-binding factor A [Peptostreptococcus anaerobius 653-L]
Length = 115
Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats.
Identities = 37/119 (31%), Positives = 65/119 (54%), Gaps = 6/119 (5%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
S R R+ EEV+ A+ +++N +D I +IS+++V ++ DLR A VYIS+
Sbjct: 3 SNRIRRISEEVKKAISVMLING-IKDPRI-TSMISVTDVEVTNDLRYAFVYISILGG-DK 59
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALE 127
+ + LN +IR +GR ++ LRY PE+ F+ D S++ ++ L+ + E
Sbjct: 60 EESLEGLNSARGYIRREVGRQVK-LRYAPEIIFKIDDSIERGMYMDELIKS--VNKDEE 115
>gi|226329680|ref|ZP_03805198.1| hypothetical protein PROPEN_03590 [Proteus penneri ATCC 35198]
gi|225202866|gb|EEG85220.1| hypothetical protein PROPEN_03590 [Proteus penneri ATCC 35198]
Length = 133
Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats.
Identities = 38/131 (29%), Positives = 69/131 (52%), Gaps = 13/131 (9%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL--- 62
++ R+ RV +E++ + +IL E +D I + ++S V +S DL A V+++
Sbjct: 2 ARDFSRSQRVSQEMQKEIA-IILQREVKDPRIG--MATVSGVEISRDLAYAKVFVTFLNL 58
Query: 63 -PLDVSPDRVIS----ALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ S + +++ ALN FIR +G+++R LR VPEL F YD SL +++ L+
Sbjct: 59 SGGEKSEEEMVAEGLTALNEAAGFIRSLLGKAMR-LRIVPELTFAYDNSLVEGMRMSNLV 117
Query: 118 CLPKIPVALEK 128
+ E+
Sbjct: 118 SN-VVKSDEER 127
>gi|170758382|ref|YP_001787728.1| ribosome-binding factor A [Clostridium botulinum A3 str. Loch
Maree]
gi|238688515|sp|B1KWK6|RBFA_CLOBM RecName: Full=Ribosome-binding factor A
gi|169405371|gb|ACA53782.1| ribosome-binding factor A [Clostridium botulinum A3 str. Loch
Maree]
Length = 120
Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats.
Identities = 34/112 (30%), Positives = 64/112 (57%), Gaps = 4/112 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS-PD 69
RA R+ EEV+ + +I N + +D +S ++S+++V ++ DL+ A VY+S+ + +
Sbjct: 5 RAGRINEEVKKEVSSIIHN-DIKDPRLSA-MVSVTDVDVTKDLKYAKVYVSIFGNEKAKE 62
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+ AL ++ FIR IGR ++ LR PE+ D S++ ++ L+ K
Sbjct: 63 ESLQALKSSVGFIRKEIGRRVK-LRNTPEVIIEVDNSIERGMHIDELLHSIK 113
>gi|21957407|gb|AAM84277.1|AE013671_4 ribosome-binding factor A [Yersinia pestis KIM 10]
gi|45435299|gb|AAS60858.1| ribosome-binding factor A [Yersinia pestis biovar Microtus str.
91001]
Length = 154
Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats.
Identities = 39/132 (29%), Positives = 68/132 (51%), Gaps = 12/132 (9%)
Query: 4 KNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP 63
+ K R+ RV +E++ + +IL E +D + + ++S + +S DL A V+++
Sbjct: 18 QMAKEFSRSQRVSQEMQKEIA-LILQREIKDPRVG--MATVSGIELSRDLAYAKVFVTFL 74
Query: 64 L----DVSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNAL 116
+ PD V I AL +IR +G+++R LR VPEL F YD SL +++ L
Sbjct: 75 NVLTDNADPDTVKNGIKALQDASGYIRTLLGKAMR-LRIVPELTFAYDNSLIEGMRMSNL 133
Query: 117 MCLPKIPVALEK 128
+ I +E+
Sbjct: 134 VSN-VIKNDVER 144
>gi|37528347|ref|NP_931692.1| ribosome-binding factor A [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|39931723|sp|Q7MYY8|RBFA_PHOLL RecName: Full=Ribosome-binding factor A
gi|36787785|emb|CAE16900.1| ribosome-binding factor A (fragment) [Photorhabdus luminescens
subsp. laumondii TTO1]
Length = 136
Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats.
Identities = 37/130 (28%), Positives = 65/130 (50%), Gaps = 12/130 (9%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
+ R RV +E++ + +IL E +D I + ++S V +S DL A V+++
Sbjct: 2 AREFSRTQRVAQEMQKEIA-IILQREVKDPRIG--MATVSGVEVSRDLAYAKVFVTFLNV 58
Query: 66 VSPD-------RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
++ + I ALN FIR +G+++R LR VPEL F YD SL +++ L+
Sbjct: 59 LTEEHDSDVVKNGIKALNEASGFIRSLLGKAMR-LRVVPELTFSYDNSLVEGMRMSNLVT 117
Query: 119 LPKIPVALEK 128
+ ++
Sbjct: 118 N-VVKNDEQR 126
>gi|148380372|ref|YP_001254913.1| ribosome-binding factor A [Clostridium botulinum A str. ATCC 3502]
gi|153933206|ref|YP_001384592.1| ribosome-binding factor A [Clostridium botulinum A str. ATCC 19397]
gi|153935306|ref|YP_001388108.1| ribosome-binding factor A [Clostridium botulinum A str. Hall]
gi|226949770|ref|YP_002804861.1| ribosome-binding factor A [Clostridium botulinum A2 str. Kyoto]
gi|166218431|sp|A7FVZ2|RBFA_CLOB1 RecName: Full=Ribosome-binding factor A
gi|166218432|sp|A5I4J2|RBFA_CLOBH RecName: Full=Ribosome-binding factor A
gi|254789742|sp|C1FS58|RBFA_CLOBJ RecName: Full=Ribosome-binding factor A
gi|148289856|emb|CAL83964.1| ribosome-binding factor A [Clostridium botulinum A str. ATCC 3502]
gi|152929250|gb|ABS34750.1| ribosome-binding factor A [Clostridium botulinum A str. ATCC 19397]
gi|152931220|gb|ABS36719.1| ribosome-binding factor A [Clostridium botulinum A str. Hall]
gi|226844456|gb|ACO87122.1| ribosome-binding factor A [Clostridium botulinum A2 str. Kyoto]
gi|322806683|emb|CBZ04252.1| ribosome-binding factor A [Clostridium botulinum H04402 065]
Length = 120
Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats.
Identities = 33/112 (29%), Positives = 64/112 (57%), Gaps = 4/112 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS-PD 69
RA R+ EEV+ + +I N + +D +S ++S+++V ++ DL+ A VY+S+ + +
Sbjct: 5 RAGRINEEVKKEVSNIIHN-DIKDPRLSA-MVSVTDVNVTKDLKYAKVYVSIFGNEKAKE 62
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+ AL ++ FIR +GR ++ LR PE+ D S++ ++ L+ K
Sbjct: 63 ESLEALKSSVGFIRKEVGRRVK-LRNTPEVIIEVDNSIERGMHIDELLHSIK 113
>gi|313199848|ref|YP_004038506.1| ribosome-binding factor a [Methylovorus sp. MP688]
gi|312439164|gb|ADQ83270.1| ribosome-binding factor A [Methylovorus sp. MP688]
Length = 123
Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats.
Identities = 32/114 (28%), Positives = 58/114 (50%), Gaps = 6/114 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K R+ RV E+++ L +L E +D + +++++EV +S DL A V+ S +
Sbjct: 2 AKEFSRSDRVAEQMQRELAD-LLQFEVKDPRVG--MVTVTEVEVSGDLAHAKVFYS--AE 56
Query: 66 VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ L F+R ++ + L LR VP+L F YD S+ + K++ L+
Sbjct: 57 KGTPELQKGLEKTAGFLRSQLAKRL-LLRTVPQLHFVYDASIDNGMKISRLIDD 109
>gi|153938139|ref|YP_001391715.1| ribosome-binding factor A [Clostridium botulinum F str. Langeland]
gi|168180704|ref|ZP_02615368.1| ribosome-binding factor A [Clostridium botulinum NCTC 2916]
gi|168184623|ref|ZP_02619287.1| ribosome-binding factor A [Clostridium botulinum Bf]
gi|237795853|ref|YP_002863405.1| ribosome-binding factor A [Clostridium botulinum Ba4 str. 657]
gi|166218433|sp|A7GG05|RBFA_CLOBL RecName: Full=Ribosome-binding factor A
gi|259551954|sp|C3L0B5|RBFA_CLOB6 RecName: Full=Ribosome-binding factor A
gi|152934035|gb|ABS39533.1| ribosome-binding factor A [Clostridium botulinum F str. Langeland]
gi|182668591|gb|EDT80570.1| ribosome-binding factor A [Clostridium botulinum NCTC 2916]
gi|182672289|gb|EDT84250.1| ribosome-binding factor A [Clostridium botulinum Bf]
gi|229261048|gb|ACQ52081.1| ribosome-binding factor A [Clostridium botulinum Ba4 str. 657]
gi|295319742|gb|ADG00120.1| ribosome-binding factor A [Clostridium botulinum F str. 230613]
Length = 120
Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats.
Identities = 33/112 (29%), Positives = 64/112 (57%), Gaps = 4/112 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS-PD 69
RA R+ EEV+ + +I N + +D +S ++S+++V ++ DL+ A VY+S+ + +
Sbjct: 5 RAGRINEEVKKEVSNIIHN-DIKDPRLSA-MVSVTDVNVTKDLKYAKVYVSIFGNEKAKE 62
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+ AL ++ FIR +GR ++ LR PE+ D S++ ++ L+ K
Sbjct: 63 ESLQALKSSVGFIRKEVGRRVK-LRNTPEVIIEVDNSIERGMHIDELLHSIK 113
>gi|187778990|ref|ZP_02995463.1| hypothetical protein CLOSPO_02585 [Clostridium sporogenes ATCC
15579]
gi|187772615|gb|EDU36417.1| hypothetical protein CLOSPO_02585 [Clostridium sporogenes ATCC
15579]
Length = 120
Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats.
Identities = 34/112 (30%), Positives = 64/112 (57%), Gaps = 4/112 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS-PD 69
RA R+ EEV+ + +I N + +D +S ++S+++V ++ DL+ A VY+S+ + +
Sbjct: 5 RAGRINEEVKKEVSSIIHN-DIKDPRLSA-MVSVTDVNVTKDLKYAKVYVSIFGNEKAKE 62
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+ AL ++ FIR IGR ++ LR PE+ D S++ ++ L+ K
Sbjct: 63 ESLQALKSSVGFIRKEIGRRVK-LRNTPEVIIEVDNSIERGMHIDELLHSIK 113
>gi|163796761|ref|ZP_02190719.1| ribosome-binding factor A [alpha proteobacterium BAL199]
gi|159178015|gb|EDP62562.1| ribosome-binding factor A [alpha proteobacterium BAL199]
Length = 130
Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats.
Identities = 35/114 (30%), Positives = 62/114 (54%), Gaps = 1/114 (0%)
Query: 14 RVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVIS 73
RVGEE+R L ++ D + ++ISEV +S DLR ATV+I+ +++
Sbjct: 2 RVGEEIRRTLARILERGTLHDPALYHAPVTISEVTVSPDLRNATVWITRLGGGDATDLLA 61
Query: 74 ALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALE 127
AL N + G + R ++ L+Y P L+F D++ + +++AL+ P + +E
Sbjct: 62 ALKRNAGRLGGLLARDIK-LKYAPRLQFARDSAFDTSSRIDALLRNPVVRNDIE 114
>gi|85058356|ref|YP_454058.1| ribosome-binding factor A [Sodalis glossinidius str. 'morsitans']
gi|123520130|sp|Q2NW22|RBFA_SODGM RecName: Full=Ribosome-binding factor A
gi|84778876|dbj|BAE73653.1| ribosome-binding factor A [Sodalis glossinidius str. 'morsitans']
Length = 138
Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats.
Identities = 36/117 (30%), Positives = 62/117 (52%), Gaps = 7/117 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K R RV +E++ + +IL E +D + + ++S V +S DL A V+++ D
Sbjct: 2 AKEYSRTQRVAQEMQKEIA-IILQREIKDPRVG--MATVSGVEVSRDLAYAKVFVTFLND 58
Query: 66 VSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ ++V + AL FI +G+++R LR VPEL F YD SL +++ L+
Sbjct: 59 NTLEQVKTGVRALQDAAGFIHSLLGKAMR-LRVVPELTFAYDNSLVEGMRMSNLVSQ 114
>gi|312127894|ref|YP_003992768.1| ribosome-binding factor a [Caldicellulosiruptor hydrothermalis 108]
gi|311777913|gb|ADQ07399.1| ribosome-binding factor A [Caldicellulosiruptor hydrothermalis 108]
Length = 132
Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats.
Identities = 35/121 (28%), Positives = 62/121 (51%), Gaps = 4/121 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
R+ RV EE++ L +I ++ +D + ++ISI +V MS DLR A VY+S+
Sbjct: 1 MQFERSDRVSEEIKKELSDII-QHDLKDPRLCAELISIVKVNMSKDLRHAKVYVSIFDKD 59
Query: 67 SP--DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPV 124
+ + AL +IR I R + +LR+ PE+ F D S++ +++ ++ I
Sbjct: 60 KEKVETTMKALENAKPYIRREISRRI-SLRFTPEITFELDDSIEYGARISQILNQLNISK 118
Query: 125 A 125
Sbjct: 119 E 119
>gi|220931629|ref|YP_002508537.1| ribosome-binding factor A [Halothermothrix orenii H 168]
gi|254789753|sp|B8CW73|RBFA_HALOH RecName: Full=Ribosome-binding factor A
gi|219992939|gb|ACL69542.1| ribosome-binding factor A [Halothermothrix orenii H 168]
Length = 122
Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats.
Identities = 37/109 (33%), Positives = 61/109 (55%), Gaps = 5/109 (4%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV-SP 68
+RA R+GE ++ + +IL E +D I IS+++V +S DLR A V++S+ D
Sbjct: 4 QRARRLGELLKKEISDIILR-EVKDPRIG--FISVTDVEVSNDLRHAKVFVSVYGDEKER 60
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ L +IR IG ++ + Y PE+ FRYD SL+ ++N L+
Sbjct: 61 KETMEGLEKATGYIRKLIGERVK-VYYTPEILFRYDDSLEHGARINELL 108
>gi|212709944|ref|ZP_03318072.1| hypothetical protein PROVALCAL_00994 [Providencia alcalifaciens DSM
30120]
gi|212687456|gb|EEB46984.1| hypothetical protein PROVALCAL_00994 [Providencia alcalifaciens DSM
30120]
Length = 136
Score = 128 bits (324), Expect = 2e-28, Method: Composition-based stats.
Identities = 39/130 (30%), Positives = 66/130 (50%), Gaps = 12/130 (9%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL- 64
K R+ RV +E++ + +IL E +D I + ++S V +S DL V+++
Sbjct: 2 AKEFSRSQRVAQEMQKEIA-IILQREIKDPRIG--MATVSGVELSRDLAYGKVFVTFFNF 58
Query: 65 --DVSPDRV----ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ S + + I ALN FIR +G+++R LR +PEL F YD SL +++ L+
Sbjct: 59 ANEKSEEEMVADGIKALNEASGFIRSLLGKAMR-LRIIPELTFEYDNSLVDGMRMSNLVS 117
Query: 119 LPKIPVALEK 128
I E+
Sbjct: 118 N-VIRSDEER 126
>gi|163745464|ref|ZP_02152824.1| ribosome-binding factor A [Oceanibulbus indolifex HEL-45]
gi|161382282|gb|EDQ06691.1| ribosome-binding factor A [Oceanibulbus indolifex HEL-45]
Length = 146
Score = 128 bits (324), Expect = 2e-28, Method: Composition-based stats.
Identities = 36/121 (29%), Positives = 60/121 (49%), Gaps = 1/121 (0%)
Query: 4 KNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP 63
+ ++R LRVGE VR AL V+ + D ++R I++ EV MS DL++AT Y+
Sbjct: 11 EGSGPTQRQLRVGETVRRALSDVLARGDVHDTDLNRLSITVGEVRMSPDLKIATAYVLPL 70
Query: 64 LDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIP 123
D V+ L N +R ++ + L L++ P+LRF+ D + +M +
Sbjct: 71 GGEGQDEVLKLLARNKNELRRQVAKKL-TLKFSPDLRFQLDRTFDQMDDTRRMMNQDVVR 129
Query: 124 V 124
Sbjct: 130 R 130
>gi|33152522|ref|NP_873875.1| ribosome-binding factor A [Haemophilus ducreyi 35000HP]
gi|38372437|sp|Q7VLI3|RBFA_HAEDU RecName: Full=Ribosome-binding factor A
gi|33148745|gb|AAP96264.1| ribosome binding factor A [Haemophilus ducreyi 35000HP]
Length = 126
Score = 128 bits (324), Expect = 2e-28, Method: Composition-based stats.
Identities = 35/117 (29%), Positives = 65/117 (55%), Gaps = 7/117 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
+ +R+ RV +E++ + VIL E +D I ++++S+V +S DL A ++++ D
Sbjct: 2 SREFKRSDRVAQELQKEIA-VILQREVKDPRIG--MVTVSDVEVSRDLAYAKIFVTFLFD 58
Query: 66 VSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
D + + L +IR +G+++R LR +PELRF YD SL +++ L+
Sbjct: 59 NDQDIIAQGMKGLEKAGPYIRTLLGKAMR-LRILPELRFIYDQSLVEGMRMSNLVSN 114
>gi|269137764|ref|YP_003294464.1| ribosome-binding factor A [Edwardsiella tarda EIB202]
gi|267983424|gb|ACY83253.1| ribosome-binding factor A [Edwardsiella tarda EIB202]
gi|304557821|gb|ADM40485.1| Ribosome-binding factor A [Edwardsiella tarda FL6-60]
Length = 132
Score = 128 bits (324), Expect = 2e-28, Method: Composition-based stats.
Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 7/117 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
+ R RV +E++ + +IL E +D + + ++S V +S DL V+++ D
Sbjct: 2 AREFSRTQRVAQEMQKEIA-IILQREVKDPRVG--MATVSGVEVSRDLAYTKVFVTFLND 58
Query: 66 VSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
P+ V + AL FIR +G+++R LR VPEL F YD SL +++ L+
Sbjct: 59 GEPETVKAGLKALQDASGFIRMLLGKAMR-LRVVPELTFAYDASLVEGMRMSNLVSN 114
>gi|223044222|ref|ZP_03614259.1| ribosome-binding factor A [Staphylococcus capitis SK14]
gi|222442372|gb|EEE48480.1| ribosome-binding factor A [Staphylococcus capitis SK14]
Length = 116
Score = 128 bits (324), Expect = 2e-28, Method: Composition-based stats.
Identities = 34/116 (29%), Positives = 63/116 (54%), Gaps = 5/116 (4%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
++ RA RVGE+++ +M I+NN+ +D + ++I++V ++ DL A VY+++
Sbjct: 1 MSNMRAERVGEQMKQEIMD-IVNNKVKDPRVG--FLTITDVELTNDLSHAKVYLTVLGSK 57
Query: 67 SP-DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
D AL FI+ +G +R LR +P+L F YD S++ K+ ++
Sbjct: 58 KEVDNTFKALEKAKGFIKSELGSRMR-LRIIPDLTFEYDESIEYGNKIERMIQDLH 112
>gi|182417577|ref|ZP_02948902.1| ribosome-binding factor A [Clostridium butyricum 5521]
gi|237668125|ref|ZP_04528109.1| ribosome-binding factor A [Clostridium butyricum E4 str. BoNT E
BL5262]
gi|182378590|gb|EDT76118.1| ribosome-binding factor A [Clostridium butyricum 5521]
gi|237656473|gb|EEP54029.1| ribosome-binding factor A [Clostridium butyricum E4 str. BoNT E
BL5262]
Length = 117
Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats.
Identities = 32/110 (29%), Positives = 60/110 (54%), Gaps = 5/110 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
R R+ EE + + +I NE +D + +IS+++V ++ DLR A VY+S+ + ++
Sbjct: 5 RGGRINEEFKREISNLI-QNEIKDPRL-TAMISVTDVKVTKDLRYAKVYVSIFCNDEEEK 62
Query: 71 --VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
++AL FIR +G+ + NLR+ PE+ D S+ ++ L+
Sbjct: 63 KSNLAALRGASGFIRKNVGQRI-NLRHTPEILIELDDSINYGMHMDELIH 111
>gi|294671352|ref|ZP_06736203.1| hypothetical protein NEIELOOT_03061 [Neisseria elongata subsp.
glycolytica ATCC 29315]
gi|291306984|gb|EFE48227.1| hypothetical protein NEIELOOT_03061 [Neisseria elongata subsp.
glycolytica ATCC 29315]
Length = 123
Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 58/117 (49%), Gaps = 4/117 (3%)
Query: 3 NKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL 62
NKN + R RV E++ L ++ +D I+I++V ++ D ATVY ++
Sbjct: 2 NKNHRGYARQDRVKEQIMRELAELVRRG-LKDPR--AGFITINDVEVTRDYSHATVYYTV 58
Query: 63 PLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
D + D AL F+R + + ++ R +PEL F+YD SL+ ++ L+
Sbjct: 59 LDDATRDITAEALEHAKGFLRSELSKRIKLFR-IPELHFQYDQSLERGMSISHLIEQ 114
>gi|299823029|ref|ZP_07054915.1| ribosome-binding factor A [Listeria grayi DSM 20601]
gi|299816558|gb|EFI83796.1| ribosome-binding factor A [Listeria grayi DSM 20601]
Length = 114
Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats.
Identities = 34/112 (30%), Positives = 63/112 (56%), Gaps = 5/112 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV-SPD 69
RA R+ E+++ L ++ N + +D + ++I++V ++ DL+ AT+YIS+ + +
Sbjct: 4 RANRIAEQMKKELGDIL-NRKLKDPRLG--FVTITDVEITGDLQQATIYISVLGEEKERE 60
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+ AL FIR IG +R LR VPEL+F D S++ +++ L+
Sbjct: 61 NTLLALEKAHGFIRSEIGSRIR-LRKVPELQFALDGSIEYGNRIDELLRDLH 111
>gi|17227559|ref|NP_484107.1| ribosome-binding factor A [Nostoc sp. PCC 7120]
gi|20978596|sp|Q8Z0M8|RBFA_ANASP RecName: Full=Ribosome-binding factor A
gi|17135041|dbj|BAB77587.1| ribosome binding facror A [Nostoc sp. PCC 7120]
Length = 133
Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 61/118 (51%), Gaps = 3/118 (2%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-DV 66
+RR RV E ++ + +++N +D + ++S+++V +S DL+ A +Y+S+ +
Sbjct: 3 TNRRVSRVAELIKREVSQMLING-IKDDRVGTGMVSVTDVDVSGDLQHAKIYVSIYGTEE 61
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPV 124
+ ++ L F+R +G +R LR PE+ F D S++ K+ L+ +
Sbjct: 62 AKAETMAGLKSATGFVRSELGARVR-LRRTPEVTFIEDRSIERGTKVLTLLNKLENAR 118
>gi|121587846|ref|ZP_01677603.1| ribosome-binding factor A [Vibrio cholerae 2740-80]
gi|121728384|ref|ZP_01681412.1| ribosome-binding factor A [Vibrio cholerae V52]
gi|147673152|ref|YP_001216138.1| ribosome-binding factor A [Vibrio cholerae O395]
gi|153215853|ref|ZP_01950185.1| ribosome-binding factor A [Vibrio cholerae 1587]
gi|153802002|ref|ZP_01956588.1| ribosome-binding factor A [Vibrio cholerae MZO-3]
gi|153818692|ref|ZP_01971359.1| ribosome-binding factor A [Vibrio cholerae NCTC 8457]
gi|153822541|ref|ZP_01975208.1| ribosome-binding factor A [Vibrio cholerae B33]
gi|153826508|ref|ZP_01979175.1| ribosome-binding factor A [Vibrio cholerae MZO-2]
gi|153829183|ref|ZP_01981850.1| ribosome-binding factor A [Vibrio cholerae 623-39]
gi|227080825|ref|YP_002809376.1| ribosome-binding factor A [Vibrio cholerae M66-2]
gi|229505734|ref|ZP_04395244.1| ribosome-binding factor A [Vibrio cholerae BX 330286]
gi|229509233|ref|ZP_04398718.1| ribosome-binding factor A [Vibrio cholerae B33]
gi|229512906|ref|ZP_04402373.1| ribosome-binding factor A [Vibrio cholerae TMA 21]
gi|229530449|ref|ZP_04419837.1| ribosome-binding factor A [Vibrio cholerae 12129(1)]
gi|229608845|ref|YP_002879493.1| ribosome-binding factor A [Vibrio cholerae MJ-1236]
gi|254226549|ref|ZP_04920132.1| ribosome-binding factor A [Vibrio cholerae V51]
gi|254291883|ref|ZP_04962665.1| ribosome-binding factor A [Vibrio cholerae AM-19226]
gi|254850878|ref|ZP_05240228.1| ribosome-binding factor A [Vibrio cholerae MO10]
gi|297580770|ref|ZP_06942696.1| ribosome-binding factor A [Vibrio cholerae RC385]
gi|298500760|ref|ZP_07010563.1| ribosome-binding factor A [Vibrio cholerae MAK 757]
gi|9655080|gb|AAF93810.1| ribosome-binding factor A [Vibrio cholerae O1 biovar El Tor str.
N16961]
gi|121547882|gb|EAX57966.1| ribosome-binding factor A [Vibrio cholerae 2740-80]
gi|121629318|gb|EAX61750.1| ribosome-binding factor A [Vibrio cholerae V52]
gi|124114570|gb|EAY33390.1| ribosome-binding factor A [Vibrio cholerae 1587]
gi|124122461|gb|EAY41204.1| ribosome-binding factor A [Vibrio cholerae MZO-3]
gi|125620953|gb|EAZ49304.1| ribosome-binding factor A [Vibrio cholerae V51]
gi|126510772|gb|EAZ73366.1| ribosome-binding factor A [Vibrio cholerae NCTC 8457]
gi|126519959|gb|EAZ77182.1| ribosome-binding factor A [Vibrio cholerae B33]
gi|146315035|gb|ABQ19574.1| ribosome-binding factor A [Vibrio cholerae O395]
gi|148875372|gb|EDL73507.1| ribosome-binding factor A [Vibrio cholerae 623-39]
gi|149739688|gb|EDM53895.1| ribosome-binding factor A [Vibrio cholerae MZO-2]
gi|150422169|gb|EDN14134.1| ribosome-binding factor A [Vibrio cholerae AM-19226]
gi|227008713|gb|ACP04925.1| ribosome-binding factor A [Vibrio cholerae M66-2]
gi|227012469|gb|ACP08679.1| ribosome-binding factor A [Vibrio cholerae O395]
gi|229332222|gb|EEN97710.1| ribosome-binding factor A [Vibrio cholerae 12129(1)]
gi|229350155|gb|EEO15108.1| ribosome-binding factor A [Vibrio cholerae TMA 21]
gi|229353805|gb|EEO18741.1| ribosome-binding factor A [Vibrio cholerae B33]
gi|229357957|gb|EEO22874.1| ribosome-binding factor A [Vibrio cholerae BX 330286]
gi|229371500|gb|ACQ61923.1| ribosome-binding factor A [Vibrio cholerae MJ-1236]
gi|254846583|gb|EET24997.1| ribosome-binding factor A [Vibrio cholerae MO10]
gi|297535186|gb|EFH74021.1| ribosome-binding factor A [Vibrio cholerae RC385]
gi|297540541|gb|EFH76599.1| ribosome-binding factor A [Vibrio cholerae MAK 757]
Length = 136
Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats.
Identities = 37/120 (30%), Positives = 68/120 (56%), Gaps = 6/120 (5%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
M+N PK R RV ++++ L +IL E +D + +++IS+V +S DL A V++
Sbjct: 1 MRNDMPKEFSRTQRVAQQLQKELA-MILQREVRDSRLG--MVTISDVEVSRDLAYAKVFV 57
Query: 61 SLP--LDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ + +P+ ++AL + IR +G+ +R LR PE+RF YD +L +++ L+
Sbjct: 58 TFLCIGEQTPESCLAALREHEVQIRMMLGKQIR-LRLTPEIRFYYDNTLVEGMRMSNLVT 116
>gi|253997784|ref|YP_003049847.1| ribosome-binding factor A [Methylovorus sp. SIP3-4]
gi|253984463|gb|ACT49320.1| ribosome-binding factor A [Methylovorus sp. SIP3-4]
Length = 123
Score = 128 bits (323), Expect = 3e-28, Method: Composition-based stats.
Identities = 31/114 (27%), Positives = 58/114 (50%), Gaps = 6/114 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K R+ R+ E+++ L +L E +D + +++++EV +S DL A V+ S +
Sbjct: 2 AKEFSRSDRIAEQMQRELAD-LLQFEVKDPRVG--MVTVTEVEVSGDLAHAKVFYS--AE 56
Query: 66 VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ L F+R ++ + L LR VP+L F YD S+ + K++ L+
Sbjct: 57 KGTPELQKGLEKTAGFLRSQLAKRL-LLRTVPQLHFVYDASIDNGMKISRLIDD 109
>gi|314933449|ref|ZP_07840814.1| ribosome-binding factor A [Staphylococcus caprae C87]
gi|313653599|gb|EFS17356.1| ribosome-binding factor A [Staphylococcus caprae C87]
Length = 116
Score = 128 bits (323), Expect = 3e-28, Method: Composition-based stats.
Identities = 34/116 (29%), Positives = 64/116 (55%), Gaps = 5/116 (4%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-D 65
++ RA RVGE+++ +M I+NN+ +D + ++I++V ++ DL A VY+++ +
Sbjct: 1 MSNMRAERVGEQMKQEIMD-IVNNKVKDPRVG--FLTITDVELTNDLSHAKVYLTVLGSN 57
Query: 66 VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
D AL FI+ +G +R LR +P+L F YD S++ K+ ++
Sbjct: 58 KEIDNTFKALEKAKGFIKSELGSRMR-LRIIPDLTFEYDKSIEYGNKIERMIQDLH 112
>gi|330685669|gb|EGG97310.1| ribosome-binding factor A [Staphylococcus epidermidis VCU121]
Length = 116
Score = 128 bits (323), Expect = 3e-28, Method: Composition-based stats.
Identities = 35/116 (30%), Positives = 63/116 (54%), Gaps = 5/116 (4%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
++ RA RVGE+++ +M I+NN+ +D + I+I++V ++ DL VY+++ +
Sbjct: 1 MSNMRAERVGEQMKKEIMD-IVNNKVKDPRVG--FITITDVELTNDLSQGKVYLTVLGNQ 57
Query: 67 SP-DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
D AL FI+ +G +R LR +PEL F YD S++ K+ ++
Sbjct: 58 KEVDNTFKALEKAKGFIKSELGSRMR-LRIIPELSFEYDESIEYGNKIERMIQDLH 112
>gi|145298045|ref|YP_001140886.1| ribosome-binding factor A [Aeromonas salmonicida subsp. salmonicida
A449]
gi|166218416|sp|A4SJR6|RBFA_AERS4 RecName: Full=Ribosome-binding factor A
gi|142850817|gb|ABO89138.1| ribosome-binding factor A [Aeromonas salmonicida subsp. salmonicida
A449]
Length = 144
Score = 128 bits (323), Expect = 3e-28, Method: Composition-based stats.
Identities = 37/118 (31%), Positives = 66/118 (55%), Gaps = 8/118 (6%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP-L 64
+ R RVG++++ + +IL E +D I ++++S+V +S DL A VY++ L
Sbjct: 2 AREFSRTNRVGQQIQREIA-LILQREVKDPRIG--MVTVSDVEVSKDLNYAKVYVTFLQL 58
Query: 65 DVSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
D+ +R+ + L +IR +G ++R LR VPELRF YD +L +++ L+
Sbjct: 59 DIDAERIAEGLKGLTEAAGYIRSLLGSAMR-LRVVPELRFYYDQTLVEGMRISNLVSN 115
>gi|15602622|ref|NP_245694.1| ribosome-binding factor A [Pasteurella multocida subsp. multocida
str. Pm70]
gi|13431798|sp|P57872|RBFA_PASMU RecName: Full=Ribosome-binding factor A
gi|12721055|gb|AAK02841.1| RbfA [Pasteurella multocida subsp. multocida str. Pm70]
Length = 132
Score = 128 bits (323), Expect = 3e-28, Method: Composition-based stats.
Identities = 35/117 (29%), Positives = 64/117 (54%), Gaps = 7/117 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
+ +R+ RV +E++ + VIL E +D I ++++S+V +S DL A V+++ D
Sbjct: 2 AREFKRSDRVAQEIQKEIA-VILQREVKDPRIG--MVTVSDVEVSSDLAYAKVFVTFLFD 58
Query: 66 VSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ + L +IR +G+++R LR VPE+RF YD SL +++ L+
Sbjct: 59 NDESAIDAGMKGLEKASPYIRSLLGKAMR-LRIVPEIRFIYDRSLIEGMRMSNLVSN 114
>gi|210622614|ref|ZP_03293274.1| hypothetical protein CLOHIR_01222 [Clostridium hiranonis DSM 13275]
gi|210154115|gb|EEA85121.1| hypothetical protein CLOHIR_01222 [Clostridium hiranonis DSM 13275]
Length = 127
Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats.
Identities = 31/110 (28%), Positives = 64/110 (58%), Gaps = 4/110 (3%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS 67
+ R R+ EE++ + +++N +D I +IS+++V ++ DLR A VY+SL
Sbjct: 3 SYNRTRRISEEIKKIIGQMLING-IKDPRI-TSMISVTDVDVTNDLRYAFVYVSLLGGNE 60
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ ++ L +IR +G+ ++ LRY+PE+ F+ D S++ +++L+
Sbjct: 61 -EESLAGLKSAAGYIRREVGKKVK-LRYIPEIMFKVDDSIERGMYMDSLI 108
>gi|254454178|ref|ZP_05067615.1| ribosome-binding factor A [Octadecabacter antarcticus 238]
gi|198268584|gb|EDY92854.1| ribosome-binding factor A [Octadecabacter antarcticus 238]
Length = 142
Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
+ R LRVGE +R + ++ E D + R I++ EV M+ DL +AT ++
Sbjct: 11 GPTTRQLRVGELIRRTMSELLQRGEVHDPDLQRMSITVGEVRMTPDLSIATCFVLPLGGK 70
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVAL 126
D I+AL N +R I R ++ L+ P+LRFR D + ++ +
Sbjct: 71 DADVAIAALARNKGELRHLISRGMK-LKVTPDLRFRIDDMYDRMDATRVMFAEDRVAKDV 129
>gi|229520935|ref|ZP_04410357.1| ribosome-binding factor A [Vibrio cholerae TM 11079-80]
gi|229342168|gb|EEO07164.1| ribosome-binding factor A [Vibrio cholerae TM 11079-80]
Length = 136
Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats.
Identities = 37/120 (30%), Positives = 68/120 (56%), Gaps = 6/120 (5%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
M+N PK R RV ++++ L +IL E +D + +++IS+V +S DL A V++
Sbjct: 1 MRNDMPKEFSRTQRVAQQLQKELA-MILQREVRDSRLG--MVTISDVEVSRDLAYAKVFV 57
Query: 61 SLP--LDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ + +P+ ++AL + IR +G+ +R LR PE+RF YD +L +++ L+
Sbjct: 58 TFLCIGEQTPESCLAALREHEVQIRMMLGKQIR-LRLTPEIRFYYDNTLVEGMRMSNLVT 116
>gi|197287231|ref|YP_002153103.1| ribosome-binding factor A [Proteus mirabilis HI4320]
gi|227357074|ref|ZP_03841444.1| ribosome-binding factor A [Proteus mirabilis ATCC 29906]
gi|238690098|sp|B4F2C0|RBFA_PROMH RecName: Full=Ribosome-binding factor A
gi|194684718|emb|CAR46706.1| ribosome-binding factor A [Proteus mirabilis HI4320]
gi|227162766|gb|EEI47729.1| ribosome-binding factor A [Proteus mirabilis ATCC 29906]
Length = 133
Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats.
Identities = 40/131 (30%), Positives = 68/131 (51%), Gaps = 14/131 (10%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP-- 63
++ RA RV +E++ + +IL E +D I + ++S V +S DL A V+++
Sbjct: 2 ARDFSRAQRVSQEMQKEIA-IILQREVKDPRIG--MATVSGVEISRDLAYAKVFVTFLNL 58
Query: 64 --LDVSPDRV----ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ S + + + ALN FIR +G+++R LR VPEL F YD SL +++ L+
Sbjct: 59 SAGEESDEEMVENGLKALNEAAGFIRSLLGKAMR-LRVVPELTFAYDNSLVEGMRMSNLV 117
Query: 118 CLPKIPVALEK 128
+ EK
Sbjct: 118 SN--VVKDDEK 126
>gi|147677605|ref|YP_001211820.1| ribosome-binding factor A [Pelotomaculum thermopropionicum SI]
gi|189039550|sp|A5D2S1|RBFA_PELTS RecName: Full=Ribosome-binding factor A
gi|146273702|dbj|BAF59451.1| ribosome-binding factor A [Pelotomaculum thermopropionicum SI]
Length = 119
Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats.
Identities = 38/110 (34%), Positives = 59/110 (53%), Gaps = 5/110 (4%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD-VS 67
S R+ RV E ++ + ++ NE +D I ++I+ V +S DLR A +Y S+
Sbjct: 2 SFRSERVAEAIKKEVSDML-RNELKDPRIG--FVTITSVEVSKDLRYANIYASVFGSPDD 58
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
I AL FIRG +G+ +R LRY PE+ F+ D S+ ++ ALM
Sbjct: 59 QKETIEALKKAQGFIRGELGKRIR-LRYTPEITFKLDQSIGRGSRVLALM 107
>gi|329736237|gb|EGG72509.1| ribosome-binding factor A [Staphylococcus epidermidis VCU028]
Length = 116
Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats.
Identities = 37/112 (33%), Positives = 65/112 (58%), Gaps = 5/112 (4%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-D 65
N+ RA RVGE+++ +M I+NN+ +D + ++I++V ++ DL A VY+++ D
Sbjct: 1 MNNIRAERVGEQMKQEIMD-IVNNKVKDPRVG--FLTITDVELTNDLSQAKVYLTVLGND 57
Query: 66 VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
D AL+ FI+ +G +R LR +PEL F YD S++ K+ ++
Sbjct: 58 KEVDNTFKALHKATGFIKSGLGSRMR-LRIIPELTFEYDESIEYGNKIERMI 108
>gi|253991501|ref|YP_003042857.1| ribosome-binding factor A [Photorhabdus asymbiotica subsp.
asymbiotica ATCC 43949]
gi|211638379|emb|CAR67001.1| ribosome-binding factor a [Photorhabdus asymbiotica subsp.
asymbiotica ATCC 43949]
gi|253782951|emb|CAQ86116.1| ribosome-binding factor a [Photorhabdus asymbiotica]
Length = 136
Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats.
Identities = 37/130 (28%), Positives = 64/130 (49%), Gaps = 13/130 (10%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
+ R RV +E++ + +IL E +D I + ++S V +S DL A V+++
Sbjct: 2 AREFSRTQRVAQEMQKEIA-IILQREVKDPRIG--MATVSGVEVSRDLAYAKVFVTFLNV 58
Query: 66 VSPD-------RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
++ + I AL FIR +G+++R LR VPEL F YD SL +++ L+
Sbjct: 59 LTEEHDSDVVKNGIKALGEASGFIRSLLGKAMR-LRVVPELTFSYDNSLVEGMRMSNLVT 117
Query: 119 LPKIPVALEK 128
+ E+
Sbjct: 118 N--VVKDDEQ 125
>gi|186681202|ref|YP_001864398.1| ribosome-binding factor A [Nostoc punctiforme PCC 73102]
gi|28380131|sp|Q93LL7|RBFA_NOSP7 RecName: Full=Ribosome-binding factor A
gi|14594717|gb|AAK68649.1| ribosome binding factor A [Nostoc punctiforme PCC 73102]
gi|186463654|gb|ACC79455.1| ribosome-binding factor A [Nostoc punctiforme PCC 73102]
Length = 139
Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats.
Identities = 31/113 (27%), Positives = 61/113 (53%), Gaps = 3/113 (2%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-DV 66
+RR RV E ++ + ++LN +D + ++S+++V +S DL+ A +Y+S+ D
Sbjct: 3 TNRRVSRVAELIKREVSQMLLNG-IKDDRVGTGMVSVTDVDVSGDLQHAKIYVSIYGTDE 61
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ ++ L ++R +G +R LR PE+ F D S++ K+ AL+
Sbjct: 62 AKVETMAGLKSATGYVRSELGARVR-LRRTPEVIFLEDRSIERGNKVLALLSQ 113
>gi|254438397|ref|ZP_05051891.1| ribosome-binding factor A [Octadecabacter antarcticus 307]
gi|198253843|gb|EDY78157.1| ribosome-binding factor A [Octadecabacter antarcticus 307]
Length = 145
Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
+ R LRVGE +R + ++ E D + R I++ EV M+ DL +AT ++
Sbjct: 14 GPTTRQLRVGELIRRTMSELLQRGEVHDPDLQRMSITVGEVRMTPDLSIATCFVLPLGGK 73
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVAL 126
D I+AL N +R I R ++ L+ P+LRFR D + ++ +
Sbjct: 74 DADVAIAALARNKGELRHLISRGMK-LKVTPDLRFRIDDMYDRMDATRVMFAQDRVAKDV 132
>gi|150016087|ref|YP_001308341.1| ribosome-binding factor A [Clostridium beijerinckii NCIMB 8052]
gi|189039533|sp|A6LSQ5|RBFA_CLOB8 RecName: Full=Ribosome-binding factor A
gi|149902552|gb|ABR33385.1| ribosome-binding factor A [Clostridium beijerinckii NCIMB 8052]
Length = 118
Score = 128 bits (322), Expect = 4e-28, Method: Composition-based stats.
Identities = 33/111 (29%), Positives = 57/111 (51%), Gaps = 5/111 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL--DVSP 68
R R+ EE + + +I NE +D + +IS+++V ++ DLR A VY+S+ D
Sbjct: 5 RGGRINEEFKREISNLI-QNEVKDPRL-TAMISVTDVKVTKDLRYAKVYVSIFSKDDEEK 62
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ AL FIR +G+ + NLR+ PE+ D S+ ++ L+
Sbjct: 63 KNNLEALKNASGFIRKSVGQKI-NLRHTPEIIIELDDSINYGMHMDELIQR 112
>gi|268592824|ref|ZP_06127045.1| ribosome-binding factor A [Providencia rettgeri DSM 1131]
gi|291311609|gb|EFE52062.1| ribosome-binding factor A [Providencia rettgeri DSM 1131]
Length = 136
Score = 128 bits (322), Expect = 4e-28, Method: Composition-based stats.
Identities = 42/130 (32%), Positives = 66/130 (50%), Gaps = 13/130 (10%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL- 64
K RA RV +E++ + +IL E +D I + ++S V +S DL V+++
Sbjct: 2 AKEFSRAQRVAQEMQKEIA-IILQREIKDPRIG--MATVSGVELSRDLAYGKVFVTFFNI 58
Query: 65 --DVSPDRV----ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
D S + + I ALN FIR IG+++R LR +PEL F YD SL +++ L+
Sbjct: 59 ANDKSEEEMVADGIKALNEASGFIRSLIGKAMR-LRIIPELTFEYDNSLVDGMRMSNLVS 117
Query: 119 LPKIPVALEK 128
+ EK
Sbjct: 118 N--VIRDDEK 125
>gi|218290089|ref|ZP_03494251.1| ribosome-binding factor A [Alicyclobacillus acidocaldarius LAA1]
gi|218239798|gb|EED06987.1| ribosome-binding factor A [Alicyclobacillus acidocaldarius LAA1]
Length = 118
Score = 127 bits (321), Expect = 4e-28, Method: Composition-based stats.
Identities = 35/112 (31%), Positives = 60/112 (53%), Gaps = 5/112 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDVSPD 69
RA +V E+++ L ++ +E +D I ++I+ V +S DL+ A VY+S+ +V +
Sbjct: 5 RAQKVAEQMKKELADIL-QHELKDPRIG--FVTITRVEVSGDLQHAKVYVSVYGPEVEKE 61
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+ L FIRG I R L ++R PEL FR D S + ++ ++ K
Sbjct: 62 ATLGVLTKAAGFIRGEIARRL-HMRIAPELVFRLDESGEYSERIEQVLKSLK 112
>gi|239636252|ref|ZP_04677254.1| ribosome-binding factor A [Staphylococcus warneri L37603]
gi|239597607|gb|EEQ80102.1| ribosome-binding factor A [Staphylococcus warneri L37603]
Length = 116
Score = 127 bits (321), Expect = 4e-28, Method: Composition-based stats.
Identities = 35/116 (30%), Positives = 64/116 (55%), Gaps = 5/116 (4%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
++ RA RVGE+++ +M I+NN+ +D + I+I++V ++ DL VY+++ +
Sbjct: 1 MSNMRAERVGEQMKKEIMD-IVNNKVKDPRVG--FITITDVELTNDLSQGKVYLTVLGNQ 57
Query: 67 SP-DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
D AL+ FI+ +G +R LR +PEL F YD S++ K+ ++
Sbjct: 58 KEVDNTFKALDKAKGFIKSELGSRMR-LRIIPELSFEYDESIEYGNKIERMIQDLH 112
>gi|298493008|ref|YP_003723185.1| ribosome-binding factor A ['Nostoc azollae' 0708]
gi|298234926|gb|ADI66062.1| ribosome-binding factor A ['Nostoc azollae' 0708]
Length = 132
Score = 127 bits (321), Expect = 4e-28, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 64/121 (52%), Gaps = 3/121 (2%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-DV 66
+RR RV E ++ + ++LN +D + ++S+++V +S DL+ A +++S+
Sbjct: 3 TNRRVSRVAELIKREVSQMLLNG-IKDDRVGTGMVSVTDVDVSGDLQHAKIFVSIYGTQE 61
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVAL 126
+ ++ L ++R +G +R LR PE+ F D SL+ K+ +L+ + +L
Sbjct: 62 AKAETMAGLKSATGYVRSELGARVR-LRRTPEVIFVEDRSLERGTKVLSLLNQLQQERSL 120
Query: 127 E 127
E
Sbjct: 121 E 121
>gi|290473448|ref|YP_003466315.1| ribosome-binding factor, role in processing of 10S rRNA
[Xenorhabdus bovienii SS-2004]
gi|289172748|emb|CBJ79519.1| ribosome-binding factor, role in processing of 10S rRNA
[Xenorhabdus bovienii SS-2004]
Length = 136
Score = 127 bits (321), Expect = 4e-28, Method: Composition-based stats.
Identities = 38/120 (31%), Positives = 62/120 (51%), Gaps = 11/120 (9%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL- 64
+ R RV +E++ + +IL E +D I + ++S V +S DL A V+++
Sbjct: 2 AREFSRTQRVAQEMQKEIA-IILQREVKDPRIG--MATVSGVEVSRDLAYAKVFVTFLNV 58
Query: 65 ---DVSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
D V I ALN FIR +G+++R LR +PEL F YD+SL +++ L+
Sbjct: 59 LVEGQDSDMVNVGIKALNEASGFIRSLLGKAMR-LRVIPELTFSYDSSLVDGMRMSNLVT 117
>gi|168207529|ref|ZP_02633534.1| ribosome-binding factor A [Clostridium perfringens E str. JGS1987]
gi|170661132|gb|EDT13815.1| ribosome-binding factor A [Clostridium perfringens E str. JGS1987]
Length = 116
Score = 127 bits (321), Expect = 5e-28, Method: Composition-based stats.
Identities = 35/113 (30%), Positives = 62/113 (54%), Gaps = 5/113 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP--LDVSP 68
R R+ EEVR + +I N+ +D + ++S+++V ++ DLR A V++SL D
Sbjct: 5 RGKRINEEVRKEVSDII-RNQIKDPRL-TAMVSVTQVEVTKDLRYAKVFVSLFAKNDEEK 62
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+ + AL + FIR +G ++ LR PE+ F DTS+ + + +L+ K
Sbjct: 63 EESLKALKSSAGFIRREVGNRVK-LRSTPEILFEEDTSIDNAMYIESLLNKIK 114
>gi|18310667|ref|NP_562601.1| ribosome-binding factor A [Clostridium perfringens str. 13]
gi|110800717|ref|YP_696372.1| ribosome-binding factor A [Clostridium perfringens ATCC 13124]
gi|110802728|ref|YP_698972.1| ribosome-binding factor A [Clostridium perfringens SM101]
gi|168211427|ref|ZP_02637052.1| ribosome-binding factor A [Clostridium perfringens B str. ATCC
3626]
gi|168214482|ref|ZP_02640107.1| ribosome-binding factor A [Clostridium perfringens CPE str. F4969]
gi|168216972|ref|ZP_02642597.1| ribosome-binding factor A [Clostridium perfringens NCTC 8239]
gi|169342675|ref|ZP_02863716.1| ribosome-binding factor A [Clostridium perfringens C str. JGS1495]
gi|182626365|ref|ZP_02954119.1| ribosome-binding factor A [Clostridium perfringens D str. JGS1721]
gi|20978576|sp|Q8XJR9|RBFA_CLOPE RecName: Full=Ribosome-binding factor A
gi|123049758|sp|Q0TPR8|RBFA_CLOP1 RecName: Full=Ribosome-binding factor A
gi|123146056|sp|Q0SSD5|RBFA_CLOPS RecName: Full=Ribosome-binding factor A
gi|18145348|dbj|BAB81391.1| ribosome-binding factor A [Clostridium perfringens str. 13]
gi|110675364|gb|ABG84351.1| ribosome-binding factor A [Clostridium perfringens ATCC 13124]
gi|110683229|gb|ABG86599.1| ribosome-binding factor A [Clostridium perfringens SM101]
gi|169299181|gb|EDS81251.1| ribosome-binding factor A [Clostridium perfringens C str. JGS1495]
gi|170710576|gb|EDT22758.1| ribosome-binding factor A [Clostridium perfringens B str. ATCC
3626]
gi|170714032|gb|EDT26214.1| ribosome-binding factor A [Clostridium perfringens CPE str. F4969]
gi|177908316|gb|EDT70864.1| ribosome-binding factor A [Clostridium perfringens D str. JGS1721]
gi|182380987|gb|EDT78466.1| ribosome-binding factor A [Clostridium perfringens NCTC 8239]
Length = 116
Score = 127 bits (321), Expect = 5e-28, Method: Composition-based stats.
Identities = 34/113 (30%), Positives = 61/113 (53%), Gaps = 5/113 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP--LDVSP 68
R R+ EEVR + +I N+ +D + ++S+++V ++ DLR A V++SL D
Sbjct: 5 RGKRINEEVRKEVSDII-RNQIKDPRL-TAMVSVTQVEVTKDLRYAKVFVSLFAKNDEEK 62
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+ + AL + FIR +G ++ LR PE+ F D S+ + + +L+ K
Sbjct: 63 EESLKALKSSAGFIRREVGNRVK-LRSTPEILFEEDNSIDNAMYIESLLNKIK 114
>gi|309389233|gb|ADO77113.1| ribosome-binding factor A [Halanaerobium praevalens DSM 2228]
Length = 127
Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats.
Identities = 33/123 (26%), Positives = 70/123 (56%), Gaps = 5/123 (4%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-D 65
+++RA+RVGE ++ + ++L E +D I +SI++V +S DLR A V+IS+ +
Sbjct: 1 MSNKRAVRVGELLKEEISQIVLR-EMKDPRIG--FVSITDVEVSGDLRHAKVFISVYGTE 57
Query: 66 VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
+ ++ L F+R +G ++ + + PE+ FRYD S+++ ++ ++ K
Sbjct: 58 KEKEETLAGLQQAQGFVRKLVGERVK-IHHTPEIIFRYDDSIENGVHISNIIKDLKQSGE 116
Query: 126 LEK 128
+++
Sbjct: 117 IKE 119
>gi|20807839|ref|NP_623010.1| ribosome-binding factor A [Thermoanaerobacter tengcongensis MB4]
gi|22096031|sp|Q8RA38|RBFA_THETN RecName: Full=Ribosome-binding factor A
gi|20516401|gb|AAM24614.1| Ribosome-binding factor A [Thermoanaerobacter tengcongensis MB4]
Length = 122
Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats.
Identities = 32/108 (29%), Positives = 61/108 (56%), Gaps = 4/108 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDVSPD 69
R+ R+ EE++ + +IL E +D I + ++SI+++ ++ DLR A VY+S+ +
Sbjct: 7 RSHRLSEELKKEISKMIL-EEIKDPRI-KAMVSITDIEVTKDLRYAKVYVSIYGSEEEKR 64
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
L +IR IGR ++ +RY PE+ F D S++ K++ ++
Sbjct: 65 ETFEGLKSAAGYIRHEIGRRIK-MRYTPEIIFELDHSIEYGAKISEIL 111
>gi|126736599|ref|ZP_01752339.1| ribosome-binding factor A [Roseobacter sp. CCS2]
gi|126713912|gb|EBA10783.1| ribosome-binding factor A [Roseobacter sp. CCS2]
Length = 131
Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats.
Identities = 34/125 (27%), Positives = 57/125 (45%), Gaps = 1/125 (0%)
Query: 3 NKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL 62
++R LRVGE +R L V+ + D ++R I++ EV M+ DLR+AT ++
Sbjct: 7 RDGKAPTQRMLRVGEVIRRTLSEVLQRGDVHDDELARMSITVGEVRMTSDLRIATAFVLP 66
Query: 63 PLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
+ AL N IR + + +++ PELRF D + AL+ +
Sbjct: 67 LGGHGKQEALEALRRNRHEIRHLVVKG-GTMKFAPELRFEIDGTFDQIDATRALLAEDHV 125
Query: 123 PVALE 127
L+
Sbjct: 126 RQDLD 130
>gi|302874664|ref|YP_003843297.1| ribosome-binding factor A [Clostridium cellulovorans 743B]
gi|307690722|ref|ZP_07633168.1| ribosome-binding factor A [Clostridium cellulovorans 743B]
gi|302577521|gb|ADL51533.1| ribosome-binding factor A [Clostridium cellulovorans 743B]
Length = 127
Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats.
Identities = 34/112 (30%), Positives = 60/112 (53%), Gaps = 4/112 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-DVSPD 69
R+ ++ EE++ + VI N +D ++ +IS++ V ++ DL+ A VY+S+ D D
Sbjct: 5 RSEKINEEMKKQISDVI-RNRVRDPRLAP-MISVTSVDVTKDLKYAKVYVSIFGSDTEKD 62
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+ L + FIR + + NLR PEL F DTS++ ++ L+ K
Sbjct: 63 ESLKILKNSSGFIRREVASKI-NLRSTPELLFNLDTSIEYGMHIDRLIHSIK 113
>gi|119509684|ref|ZP_01628830.1| ribosome-binding factor A [Nodularia spumigena CCY9414]
gi|119465703|gb|EAW46594.1| ribosome-binding factor A [Nodularia spumigena CCY9414]
Length = 142
Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 61/115 (53%), Gaps = 3/115 (2%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-DV 66
+RR RV E ++ + ++L+ +D + ++S++ V +S DL+ A VY+S+ +
Sbjct: 3 TNRRISRVAELIKREVSQMLLHG-IKDDRVGTGMVSVTYVDVSGDLQHAKVYVSIYGTES 61
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+ ++ L F+R +G +R LR PE+ F D S++ K+ +L+ +
Sbjct: 62 AKSETMAGLKSATGFVRSELGSRVR-LRRTPEVIFIEDDSIEQGNKVLSLLNKLE 115
>gi|70734338|ref|YP_257978.1| ribosome-binding factor A [Pseudomonas fluorescens Pf-5]
gi|123658131|sp|Q4KIF5|RBFA_PSEF5 RecName: Full=Ribosome-binding factor A
gi|68348637|gb|AAY96243.1| ribosome-binding factor A [Pseudomonas fluorescens Pf-5]
Length = 133
Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats.
Identities = 31/126 (24%), Positives = 65/126 (51%), Gaps = 8/126 (6%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K R R+G++++ L +I E +D + +++I+ V +S D+ A ++I++
Sbjct: 2 AKEYSRTQRIGDQMQRELAQLI-RREVKDPRVG--LVTITAVEVSRDVGHAKIFITVMGQ 58
Query: 66 VSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
+ +++ I LN F+R ++ + ++ LR VP+L F YD S+ L+AL+ +
Sbjct: 59 ENAEQIAQSIKVLNSAAGFLRMQLAKEMK-LRSVPQLHFHYDESVARGAHLSALIER-AV 116
Query: 123 PVALEK 128
+
Sbjct: 117 AEDSQH 122
>gi|289550938|ref|YP_003471842.1| Ribosome-binding factor A [Staphylococcus lugdunensis HKU09-01]
gi|315658440|ref|ZP_07911312.1| ribosome-binding factor A [Staphylococcus lugdunensis M23590]
gi|289180470|gb|ADC87715.1| Ribosome-binding factor A [Staphylococcus lugdunensis HKU09-01]
gi|315496769|gb|EFU85092.1| ribosome-binding factor A [Staphylococcus lugdunensis M23590]
Length = 115
Score = 127 bits (320), Expect = 6e-28, Method: Composition-based stats.
Identities = 35/116 (30%), Positives = 62/116 (53%), Gaps = 5/116 (4%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-D 65
+ RA RVGE+++ +M I+NN+ +D + I+I++V ++ DL A V++++ D
Sbjct: 1 MTNMRAERVGEQMKKEIMD-IVNNKVKDPRVG--FITITDVDLTNDLSQAKVFLTVLGSD 57
Query: 66 VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
D AL+ FI+ + +R LR +PEL F YD S+ K+ ++
Sbjct: 58 KEIDDTFKALDKAKGFIKSELATRMR-LRIIPELSFEYDKSIDYGNKIEKMIRDLH 112
>gi|89895262|ref|YP_518749.1| hypothetical protein DSY2516 [Desulfitobacterium hafniense Y51]
gi|219669693|ref|YP_002460128.1| ribosome-binding factor A [Desulfitobacterium hafniense DCB-2]
gi|122482377|sp|Q24UI7|RBFA_DESHY RecName: Full=Ribosome-binding factor A
gi|254789746|sp|B8FR05|RBFA_DESHD RecName: Full=Ribosome-binding factor A
gi|89334710|dbj|BAE84305.1| hypothetical protein [Desulfitobacterium hafniense Y51]
gi|219539953|gb|ACL21692.1| ribosome-binding factor A [Desulfitobacterium hafniense DCB-2]
Length = 125
Score = 127 bits (320), Expect = 6e-28, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 61/120 (50%), Gaps = 7/120 (5%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD-VSP 68
R+ R+ E ++ + +I E +D I ++++ V ++ DL A VY+S+ D
Sbjct: 4 HRSNRLAETLKQEISQLI-REELKDPRIG--FVTVTSVEVADDLGNAKVYVSVLGDSQQA 60
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALEK 128
+ AL F+R IG+ +R LR+ PE+ F+YDTS++ + L+ + EK
Sbjct: 61 KDSLDALKRAAGFVRSEIGKRVR-LRHAPEIVFKYDTSIEHGAHIAQLLRG--VKQEEEK 117
>gi|242373562|ref|ZP_04819136.1| ribosome-binding factor A [Staphylococcus epidermidis M23864:W1]
gi|242348925|gb|EES40527.1| ribosome-binding factor A [Staphylococcus epidermidis M23864:W1]
Length = 118
Score = 127 bits (320), Expect = 6e-28, Method: Composition-based stats.
Identities = 33/116 (28%), Positives = 63/116 (54%), Gaps = 5/116 (4%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
++ RA RVGE+++ +M I+N + +D + ++I++V ++ DL A VY+++ +
Sbjct: 3 MSNMRAERVGEQMKQEIMD-IVNTKVKDPRVG--FLTITDVELTNDLSQAKVYLTVLGNE 59
Query: 67 SP-DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
D AL FI+ +G +R LR +P+L F YD S++ K+ ++
Sbjct: 60 KEVDNTFKALEKAKGFIKSELGSRMR-LRIIPDLTFEYDESIEYGNKIERMIQDLH 114
>gi|15924260|ref|NP_371794.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
Mu50]
gi|15926853|ref|NP_374386.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
N315]
gi|21282882|ref|NP_645970.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus MW2]
gi|49483433|ref|YP_040657.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
MRSA252]
gi|49486109|ref|YP_043330.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
MSSA476]
gi|57651840|ref|YP_186146.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus COL]
gi|82750871|ref|YP_416612.1| ribosome-binding factor A [Staphylococcus aureus RF122]
gi|87161703|ref|YP_493860.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|88194980|ref|YP_499780.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus NCTC
8325]
gi|150393819|ref|YP_001316494.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus JH1]
gi|156979591|ref|YP_001441850.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus Mu3]
gi|161509436|ref|YP_001575095.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
USA300_TCH1516]
gi|221142504|ref|ZP_03566997.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus str.
JKD6009]
gi|253315626|ref|ZP_04838839.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus str.
CF-Marseille]
gi|255006057|ref|ZP_05144658.2| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
Mu50-omega]
gi|262048160|ref|ZP_06021047.1| ribosome-binding factor A [Staphylococcus aureus D30]
gi|262051332|ref|ZP_06023555.1| ribosome-binding factor A [Staphylococcus aureus 930918-3]
gi|269202887|ref|YP_003282156.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
ED98]
gi|284024263|ref|ZP_06378661.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus 132]
gi|294848266|ref|ZP_06789013.1| ribosome-binding factor A [Staphylococcus aureus A9754]
gi|295406207|ref|ZP_06816014.1| ribosome-binding factor A [Staphylococcus aureus A8819]
gi|295427757|ref|ZP_06820389.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
EMRSA16]
gi|296274828|ref|ZP_06857335.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus MR1]
gi|297244435|ref|ZP_06928318.1| ribosome-binding factor A [Staphylococcus aureus A8796]
gi|54039026|sp|P65967|RBFA_STAAN RecName: Full=Ribosome-binding factor A
gi|54039027|sp|P65968|RBFA_STAAW RecName: Full=Ribosome-binding factor A
gi|54041787|sp|P65966|RBFA_STAAM RecName: Full=Ribosome-binding factor A
gi|56749520|sp|Q6G9U3|RBFA_STAAS RecName: Full=Ribosome-binding factor A
gi|56749567|sp|Q6GHG5|RBFA_STAAR RecName: Full=Ribosome-binding factor A
gi|61214665|sp|Q5HGG1|RBFA_STAAC RecName: Full=Ribosome-binding factor A
gi|122540682|sp|Q2G2Q4|RBFA_STAA8 RecName: Full=Ribosome-binding factor A
gi|123486171|sp|Q2FHG8|RBFA_STAA3 RecName: Full=Ribosome-binding factor A
gi|123549084|sp|Q2YXP6|RBFA_STAAB RecName: Full=Ribosome-binding factor A
gi|166219410|sp|A7X1Q2|RBFA_STAA1 RecName: Full=Ribosome-binding factor A
gi|172049025|sp|A6QGG9|RBFA_STAAE RecName: Full=Ribosome-binding factor A
gi|182676603|sp|A5ISF4|RBFA_STAA9 RecName: Full=Ribosome-binding factor A
gi|189039563|sp|A6U189|RBFA_STAA2 RecName: Full=Ribosome-binding factor A
gi|189039564|sp|A8Z3V0|RBFA_STAAT RecName: Full=Ribosome-binding factor A
gi|13701070|dbj|BAB42365.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
N315]
gi|14247040|dbj|BAB57432.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
Mu50]
gi|21204321|dbj|BAB95018.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus MW2]
gi|49241562|emb|CAG40248.1| putative ribosome-binding factor A [Staphylococcus aureus subsp.
aureus MRSA252]
gi|49244552|emb|CAG42981.1| putative ribosome-binding factor A [Staphylococcus aureus subsp.
aureus MSSA476]
gi|57286026|gb|AAW38120.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus COL]
gi|82656402|emb|CAI80821.1| ribosome-binding factor A [Staphylococcus aureus RF122]
gi|87127677|gb|ABD22191.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|87202538|gb|ABD30348.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus NCTC
8325]
gi|149946271|gb|ABR52207.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus JH1]
gi|156721726|dbj|BAF78143.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus Mu3]
gi|160368245|gb|ABX29216.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
USA300_TCH1516]
gi|259160707|gb|EEW45728.1| ribosome-binding factor A [Staphylococcus aureus 930918-3]
gi|259163726|gb|EEW48281.1| ribosome-binding factor A [Staphylococcus aureus D30]
gi|262075177|gb|ACY11150.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
ED98]
gi|285816952|gb|ADC37439.1| Ribosome-binding factor A [Staphylococcus aureus 04-02981]
gi|294825066|gb|EFG41488.1| ribosome-binding factor A [Staphylococcus aureus A9754]
gi|294968795|gb|EFG44817.1| ribosome-binding factor A [Staphylococcus aureus A8819]
gi|295128115|gb|EFG57749.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
EMRSA16]
gi|297178465|gb|EFH37711.1| ribosome-binding factor A [Staphylococcus aureus A8796]
gi|298694562|gb|ADI97784.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
ED133]
gi|302332876|gb|ADL23069.1| ribosome-binding factor A (P15B PROTEIN) [Staphylococcus aureus
subsp. aureus JKD6159]
gi|312829664|emb|CBX34506.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
ECT-R 2]
gi|315131064|gb|EFT87048.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
CGS03]
gi|315194158|gb|EFU24551.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
CGS00]
gi|315198512|gb|EFU28841.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
CGS01]
Length = 116
Score = 126 bits (319), Expect = 6e-28, Method: Composition-based stats.
Identities = 36/116 (31%), Positives = 65/116 (56%), Gaps = 5/116 (4%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-D 65
+S RA RVGE+++ LM +I NN+ +D + I+I++V ++ DL A V++++ D
Sbjct: 1 MSSMRAERVGEQMKKELMDII-NNKVKDPRVG--FITITDVVLTNDLSQAKVFLTVLGND 57
Query: 66 VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+ AL+ FI+ +G +R LR +PEL + YD S++ K+ ++
Sbjct: 58 KEVENTFKALDKAKGFIKSELGSRMR-LRIMPELMYEYDQSIEYGNKIERMIQDLH 112
>gi|91774424|ref|YP_544180.1| ribosome-binding factor A [Methylobacillus flagellatus KT]
gi|122399242|sp|Q1GXD5|RBFA_METFK RecName: Full=Ribosome-binding factor A
gi|91708411|gb|ABE48339.1| ribosome-binding factor A [Methylobacillus flagellatus KT]
Length = 125
Score = 126 bits (319), Expect = 7e-28, Method: Composition-based stats.
Identities = 33/111 (29%), Positives = 57/111 (51%), Gaps = 5/111 (4%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
K R+ RV E+++ L +L E +D +S +++++EV +S D+ A VY + P
Sbjct: 3 KEFSRSDRVAEQIQRELAD-LLQFEVKDPRVSS-MVTVTEVEVSGDMSHAKVYYTAPQGT 60
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ L F+R ++ R L LR VP+L F YD S+ ++ L+
Sbjct: 61 --PELQKGLEKTAGFLRSQLARRL-LLRTVPQLHFVYDASIDRGMRIAKLI 108
>gi|28210962|ref|NP_781906.1| ribosome-binding factor A [Clostridium tetani E88]
gi|32171612|sp|Q895J7|RBFA_CLOTE RecName: Full=Ribosome-binding factor A
gi|28203401|gb|AAO35843.1| ribosome-binding factor A [Clostridium tetani E88]
Length = 121
Score = 126 bits (319), Expect = 7e-28, Method: Composition-based stats.
Identities = 33/112 (29%), Positives = 63/112 (56%), Gaps = 4/112 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS-PD 69
RA R+ EEV+ + +I + +D IS ++S+++V ++ D R A VY+S+ D +
Sbjct: 5 RAGRINEEVKKEISSII-RMDLKDPRISA-MVSVTKVDVTKDQRYAKVYVSIFGDEKSKE 62
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+ AL + FIR +G ++ LRY PE+ + D S++ +++++ K
Sbjct: 63 ETLEALKSSSGFIRREVGHRIK-LRYTPEIIIQNDDSIEHGMHIDSILDKIK 113
>gi|332653583|ref|ZP_08419328.1| ribosome-binding factor A [Ruminococcaceae bacterium D16]
gi|332518729|gb|EGJ48332.1| ribosome-binding factor A [Ruminococcaceae bacterium D16]
Length = 130
Score = 126 bits (319), Expect = 7e-28, Method: Composition-based stats.
Identities = 32/114 (28%), Positives = 59/114 (51%), Gaps = 4/114 (3%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
S R R+ EE++ L +I +D + +IS++ V + DL+ A V+IS+ +
Sbjct: 3 SNRIGRINEEIQRELSSLIP--TVKDPRV-TGMISVTAVETTPDLKYAKVHISVLDKSNE 59
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
+V+ L ++R +GR+L NLR P+L F D S+ + +++ P +
Sbjct: 60 AQVLKGLKSAGGYLRRELGRTL-NLRNTPQLSFVPDDSIDKGAHILSMLRDPNV 112
>gi|307243339|ref|ZP_07525503.1| ribosome-binding factor A [Peptostreptococcus stomatis DSM 17678]
gi|306493286|gb|EFM65275.1| ribosome-binding factor A [Peptostreptococcus stomatis DSM 17678]
Length = 115
Score = 126 bits (319), Expect = 7e-28, Method: Composition-based stats.
Identities = 37/119 (31%), Positives = 64/119 (53%), Gaps = 6/119 (5%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
S R R+ EEVR + +++N +D I +IS+++V ++ DLR A VYIS+
Sbjct: 3 SNRIKRISEEVRKVVSSMLING-IKDPRI-TSMISVTDVEVTNDLRYAFVYISILGG-DR 59
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALE 127
+ + LN +IR +GR ++ LRY PE+ F+ D S++ ++ L+ + E
Sbjct: 60 EASLEGLNSARGYIRREVGRQVK-LRYAPEIVFKIDDSIERGMYMDELIKS--VNKDEE 115
>gi|229525297|ref|ZP_04414702.1| ribosome-binding factor A [Vibrio cholerae bv. albensis VL426]
gi|229338878|gb|EEO03895.1| ribosome-binding factor A [Vibrio cholerae bv. albensis VL426]
Length = 136
Score = 126 bits (319), Expect = 7e-28, Method: Composition-based stats.
Identities = 37/120 (30%), Positives = 68/120 (56%), Gaps = 6/120 (5%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
M+N PK R+ RV ++++ L +IL E +D + +++IS+V +S DL A V++
Sbjct: 1 MRNDMPKEFSRSQRVAQQLQKELA-MILQREVRDSRLG--MVTISDVEVSRDLAYAKVFV 57
Query: 61 SLP--LDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ + +P+ + AL + IR +G+ +R LR PE+RF YD +L +++ L+
Sbjct: 58 TFLCIGEQTPESCLEALREHEVQIRMMLGKQIR-LRLTPEVRFYYDNTLVEGMRMSNLVT 116
>gi|56478756|ref|YP_160345.1| ribosome-binding factor A [Aromatoleum aromaticum EbN1]
gi|61214724|sp|Q5NZS0|RBFA_AZOSE RecName: Full=Ribosome-binding factor A
gi|56314799|emb|CAI09444.1| ribosome-binding factor A [Aromatoleum aromaticum EbN1]
Length = 127
Score = 126 bits (319), Expect = 8e-28, Method: Composition-based stats.
Identities = 32/115 (27%), Positives = 63/115 (54%), Gaps = 5/115 (4%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI-SLPL 64
PK R+ RV E+VR L +I E +D + I++++V ++ D A V+ S+
Sbjct: 2 PKEFSRSQRVAEQVRRELAELI-RLEVKDPRVG--FITLTDVEITPDYAHAKVFFTSMKG 58
Query: 65 DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ D +++ L+ F+R +G+ +R + +PEL F YD+S++ +++ L+
Sbjct: 59 EEGLDEILTGLHRASGFLRRELGKRVR-IHTLPELHFHYDSSVERGSRMSQLIDQ 112
>gi|261345160|ref|ZP_05972804.1| ribosome-binding factor A [Providencia rustigianii DSM 4541]
gi|282566851|gb|EFB72386.1| ribosome-binding factor A [Providencia rustigianii DSM 4541]
Length = 137
Score = 126 bits (319), Expect = 8e-28, Method: Composition-based stats.
Identities = 39/131 (29%), Positives = 65/131 (49%), Gaps = 13/131 (9%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K R+ RV +E++ + +IL E +D I + ++S V +S DL V+++
Sbjct: 2 AKEFSRSQRVAQEMQKEIA-IILQREIKDPRIG--MATVSGVELSRDLAYGKVFVTFFNI 58
Query: 66 VSPD--------RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ D I ALN FIR +G+++R LR +PEL F YD+SL +++ L+
Sbjct: 59 ANDDKSEAEMVAEGIKALNEASGFIRSLLGKAMR-LRIIPELTFEYDSSLVDGMRMSNLV 117
Query: 118 CLPKIPVALEK 128
I E+
Sbjct: 118 SN-VIRNDEER 127
>gi|226313018|ref|YP_002772912.1| ribosome binding factor A [Brevibacillus brevis NBRC 100599]
gi|254789735|sp|C0ZF49|RBFA_BREBN RecName: Full=Ribosome-binding factor A
gi|226095966|dbj|BAH44408.1| ribosome binding factor A [Brevibacillus brevis NBRC 100599]
Length = 121
Score = 126 bits (318), Expect = 9e-28, Method: Composition-based stats.
Identities = 28/113 (24%), Positives = 61/113 (53%), Gaps = 5/113 (4%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-D 65
N R RVGEE++ L V+ +D + +++++V +S DL++A V++S+ +
Sbjct: 1 MNKTRISRVGEEIKKELSLVLQRG-LKDPRVG--FVTVTDVEVSSDLQLAKVFVSIFGSE 57
Query: 66 VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
++ L ++R IG+ ++ LR++P+ F+ D S+ K+ +++
Sbjct: 58 EERKASLAGLTKAKGYLRTEIGKRVK-LRHIPDFVFKLDESIDYGSKIESILR 109
>gi|260771172|ref|ZP_05880099.1| ribosome-binding factor A [Vibrio furnissii CIP 102972]
gi|260613769|gb|EEX38961.1| ribosome-binding factor A [Vibrio furnissii CIP 102972]
gi|315179222|gb|ADT86136.1| ribosome-binding factor A [Vibrio furnissii NCTC 11218]
Length = 131
Score = 126 bits (318), Expect = 9e-28, Method: Composition-based stats.
Identities = 36/125 (28%), Positives = 68/125 (54%), Gaps = 7/125 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP-- 63
PK R RV ++++ L +IL E +D + +++IS+V +S DL A V+++
Sbjct: 2 PKEFSRTQRVAQQLQKELA-MILQREVRDSRLG--MVTISDVEVSRDLAYAKVFVTFLCV 58
Query: 64 LDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIP 123
+ +P+ ++AL + IR +G+ +R LR PE+RF YD +L +++ L+ +
Sbjct: 59 GEQTPESCLNALREHEVHIRMMLGKRIR-LRLTPEIRFHYDNTLVEGMRMSNLVTE-VVS 116
Query: 124 VALEK 128
+K
Sbjct: 117 QDKQK 121
>gi|289207911|ref|YP_003459977.1| ribosome-binding factor A [Thioalkalivibrio sp. K90mix]
gi|288943542|gb|ADC71241.1| ribosome-binding factor A [Thioalkalivibrio sp. K90mix]
Length = 147
Score = 126 bits (318), Expect = 9e-28, Method: Composition-based stats.
Identities = 32/116 (27%), Positives = 63/116 (54%), Gaps = 5/116 (4%)
Query: 5 NPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LP 63
++ R+ RVG++++ L +I E +D + +I++++V +S DL A V+ + L
Sbjct: 3 GNRDFHRSDRVGDQIQRELAELI-RLEVKDPRVG--MITLADVEVSRDLAHAKVFFTQLG 59
Query: 64 LDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ LN F+R +G+ +R LR VP+LRF YD + + ++++L+
Sbjct: 60 GEEKGREAQQGLNHAAGFLRRALGQRMR-LRSVPQLRFVYDDTPERGARMSSLIDQ 114
>gi|134299803|ref|YP_001113299.1| ribosome-binding factor A [Desulfotomaculum reducens MI-1]
gi|172044303|sp|A4J5X1|RBFA_DESRM RecName: Full=Ribosome-binding factor A
gi|134052503|gb|ABO50474.1| ribosome-binding factor A [Desulfotomaculum reducens MI-1]
Length = 120
Score = 126 bits (318), Expect = 9e-28, Method: Composition-based stats.
Identities = 33/111 (29%), Positives = 59/111 (53%), Gaps = 5/111 (4%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVS 67
S R RV E ++ + +I N+ +D I ++I+ V ++ DL A ++IS + D
Sbjct: 2 SHRPERVAEAIKKEVADLI-RNDIKDPRIG--FVTITGVEVTRDLSFAKIFISVMGSDAH 58
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+S L + ++R IGR ++ LR+ PEL F+ DTSL ++ ++
Sbjct: 59 RQETLSILQKSAGYMRSEIGRRIK-LRHAPELIFKLDTSLDHGTRIAEILH 108
>gi|16331339|ref|NP_442067.1| ribosome-binding factor A [Synechocystis sp. PCC 6803]
gi|3914560|sp|Q55625|RBFA_SYNY3 RecName: Full=Ribosome-binding factor A
gi|1001511|dbj|BAA10137.1| sll0754 [Synechocystis sp. PCC 6803]
Length = 133
Score = 126 bits (318), Expect = 9e-28, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 64/121 (52%), Gaps = 3/121 (2%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD-V 66
SRR RV ++ + ++L +E +D + ++S++EV +S DL+ A +++S+
Sbjct: 3 TSRRVSRVSSLIKREVSQMLL-HEIKDDRVGTGMVSVTEVEVSGDLQHAKIFVSIYGSPE 61
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVAL 126
+ ++ L+ F+R +G+ +R LR PE+ F D SL+ K+ L+ +A
Sbjct: 62 AKASTMAGLHSAAPFVRRELGQRMR-LRRTPEVSFLEDRSLERGDKILNLLNNLPQAIAT 120
Query: 127 E 127
E
Sbjct: 121 E 121
>gi|113460965|ref|YP_719032.1| ribosome-binding factor A [Haemophilus somnus 129PT]
gi|170717522|ref|YP_001784613.1| ribosome-binding factor A [Haemophilus somnus 2336]
gi|123327302|sp|Q0I3P4|RBFA_HAES1 RecName: Full=Ribosome-binding factor A
gi|189039544|sp|B0UU14|RBFA_HAES2 RecName: Full=Ribosome-binding factor A
gi|112823008|gb|ABI25097.1| ribosome-binding factor A [Haemophilus somnus 129PT]
gi|168825651|gb|ACA31022.1| ribosome-binding factor A [Haemophilus somnus 2336]
Length = 126
Score = 126 bits (318), Expect = 1e-27, Method: Composition-based stats.
Identities = 35/117 (29%), Positives = 64/117 (54%), Gaps = 7/117 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
+ +R+ RV +E++ + VIL E +D I ++++S+V +S DL A ++++ D
Sbjct: 2 AREFKRSDRVAQEIQKEVA-VILQREVKDPRIG--MVTVSDVEISSDLAYAKIFVTFLFD 58
Query: 66 VSP---DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
++ + L +IR +G+ +R LR VPELRF YD SL +++ L+
Sbjct: 59 QDENVIEQGMKGLEKASPYIRSLLGKVMR-LRIVPELRFIYDQSLVDGMRMSNLVTN 114
>gi|148267760|ref|YP_001246703.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus JH9]
gi|151221391|ref|YP_001332213.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus str.
Newman]
gi|253731889|ref|ZP_04866054.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|253733492|ref|ZP_04867657.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
TCH130]
gi|257425324|ref|ZP_05601749.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
55/2053]
gi|257427985|ref|ZP_05604383.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
65-1322]
gi|257430618|ref|ZP_05607000.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
68-397]
gi|257433378|ref|ZP_05609736.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
E1410]
gi|257436220|ref|ZP_05612267.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
M876]
gi|257795674|ref|ZP_05644653.1| ribosome-binding factor A [Staphylococcus aureus A9781]
gi|258416077|ref|ZP_05682345.1| ribosome-binding factor A [Staphylococcus aureus A9763]
gi|258421660|ref|ZP_05684584.1| ribosome-binding factor A [Staphylococcus aureus A9719]
gi|258423889|ref|ZP_05686774.1| ribosome-binding factor A [Staphylococcus aureus A9635]
gi|258434816|ref|ZP_05688890.1| ribosome-binding factor A [Staphylococcus aureus A9299]
gi|258444608|ref|ZP_05692937.1| ribosome-binding factor A [Staphylococcus aureus A8115]
gi|258447559|ref|ZP_05695703.1| ribosome-binding factor A [Staphylococcus aureus A6300]
gi|258449401|ref|ZP_05697504.1| ribosome-binding factor A [Staphylococcus aureus A6224]
gi|258452569|ref|ZP_05700575.1| ribosome-binding factor A [Staphylococcus aureus A5948]
gi|258454780|ref|ZP_05702744.1| ribosome-binding factor A [Staphylococcus aureus A5937]
gi|282892758|ref|ZP_06300993.1| ribosome-binding factor A [Staphylococcus aureus A8117]
gi|282903825|ref|ZP_06311713.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
C160]
gi|282905588|ref|ZP_06313443.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
Btn1260]
gi|282908563|ref|ZP_06316393.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
WW2703/97]
gi|282910842|ref|ZP_06318645.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
WBG10049]
gi|282914047|ref|ZP_06321834.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
M899]
gi|282918969|ref|ZP_06326704.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
C427]
gi|282920514|ref|ZP_06328235.1| ribosome-binding factor A [Staphylococcus aureus A9765]
gi|282924092|ref|ZP_06331768.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
C101]
gi|282927612|ref|ZP_06335228.1| ribosome-binding factor A [Staphylococcus aureus A10102]
gi|283958013|ref|ZP_06375464.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
A017934/97]
gi|293501079|ref|ZP_06666930.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
58-424]
gi|293510041|ref|ZP_06668749.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
M809]
gi|297208084|ref|ZP_06924515.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus ATCC
51811]
gi|297591285|ref|ZP_06949923.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus MN8]
gi|300912165|ref|ZP_07129608.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
TCH70]
gi|304381166|ref|ZP_07363819.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus ATCC
BAA-39]
gi|147740829|gb|ABQ49127.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus JH9]
gi|150374191|dbj|BAF67451.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus str.
Newman]
gi|253724299|gb|EES93028.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|253728546|gb|EES97275.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
TCH130]
gi|257271781|gb|EEV03919.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
55/2053]
gi|257274826|gb|EEV06313.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
65-1322]
gi|257278746|gb|EEV09365.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
68-397]
gi|257281471|gb|EEV11608.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
E1410]
gi|257284502|gb|EEV14622.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
M876]
gi|257789646|gb|EEV27986.1| ribosome-binding factor A [Staphylococcus aureus A9781]
gi|257839225|gb|EEV63701.1| ribosome-binding factor A [Staphylococcus aureus A9763]
gi|257842346|gb|EEV66771.1| ribosome-binding factor A [Staphylococcus aureus A9719]
gi|257845918|gb|EEV69947.1| ribosome-binding factor A [Staphylococcus aureus A9635]
gi|257849177|gb|EEV73159.1| ribosome-binding factor A [Staphylococcus aureus A9299]
gi|257850101|gb|EEV74054.1| ribosome-binding factor A [Staphylococcus aureus A8115]
gi|257853750|gb|EEV76709.1| ribosome-binding factor A [Staphylococcus aureus A6300]
gi|257857389|gb|EEV80287.1| ribosome-binding factor A [Staphylococcus aureus A6224]
gi|257859787|gb|EEV82629.1| ribosome-binding factor A [Staphylococcus aureus A5948]
gi|257863163|gb|EEV85927.1| ribosome-binding factor A [Staphylococcus aureus A5937]
gi|269940761|emb|CBI49143.1| putative ribosome-binding factor A [Staphylococcus aureus subsp.
aureus TW20]
gi|282314064|gb|EFB44456.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
C101]
gi|282316779|gb|EFB47153.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
C427]
gi|282322115|gb|EFB52439.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
M899]
gi|282325447|gb|EFB55756.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
WBG10049]
gi|282327625|gb|EFB57908.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
WW2703/97]
gi|282330880|gb|EFB60394.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
Btn1260]
gi|282590615|gb|EFB95692.1| ribosome-binding factor A [Staphylococcus aureus A10102]
gi|282594176|gb|EFB99163.1| ribosome-binding factor A [Staphylococcus aureus A9765]
gi|282595443|gb|EFC00407.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
C160]
gi|282764755|gb|EFC04880.1| ribosome-binding factor A [Staphylococcus aureus A8117]
gi|283470485|emb|CAQ49696.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
ST398]
gi|283790162|gb|EFC28979.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
A017934/97]
gi|291096084|gb|EFE26345.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
58-424]
gi|291466985|gb|EFF09503.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
M809]
gi|296887327|gb|EFH26229.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus ATCC
51811]
gi|297576171|gb|EFH94887.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus MN8]
gi|300886411|gb|EFK81613.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
TCH70]
gi|302751093|gb|ADL65270.1| ribosome-binding factor A (P15B PROTEIN) [Staphylococcus aureus
subsp. aureus str. JKD6008]
gi|304340149|gb|EFM06090.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus ATCC
BAA-39]
gi|312438350|gb|ADQ77421.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
TCH60]
gi|320140913|gb|EFW32760.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
MRSA131]
gi|320144371|gb|EFW36137.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
MRSA177]
gi|323441050|gb|EGA98757.1| ribosome-binding factor A [Staphylococcus aureus O11]
gi|323443919|gb|EGB01530.1| ribosome-binding factor A [Staphylococcus aureus O46]
gi|329313940|gb|AEB88353.1| Ribosome-binding factor A [Staphylococcus aureus subsp. aureus
T0131]
gi|329727531|gb|EGG63987.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
21172]
gi|329727805|gb|EGG64256.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
21189]
gi|329733675|gb|EGG70003.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
21193]
Length = 130
Score = 126 bits (318), Expect = 1e-27, Method: Composition-based stats.
Identities = 37/121 (30%), Positives = 66/121 (54%), Gaps = 5/121 (4%)
Query: 2 KNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS 61
K +S RA RVGE+++ LM +I NN+ +D + I+I++V ++ DL A V+++
Sbjct: 10 KEVTRMSSMRAERVGEQMKKELMDII-NNKVKDPRVG--FITITDVVLTNDLSQAKVFLT 66
Query: 62 LPL-DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
+ D + AL+ FI+ +G +R LR +PEL + YD S++ K+ ++
Sbjct: 67 VLGNDKEVENTFKALDKAKGFIKSELGSRMR-LRIMPELMYEYDQSIEYGNKIERMIQDL 125
Query: 121 K 121
Sbjct: 126 H 126
>gi|258511416|ref|YP_003184850.1| ribosome-binding factor A [Alicyclobacillus acidocaldarius subsp.
acidocaldarius DSM 446]
gi|257478142|gb|ACV58461.1| ribosome-binding factor A [Alicyclobacillus acidocaldarius subsp.
acidocaldarius DSM 446]
Length = 118
Score = 126 bits (318), Expect = 1e-27, Method: Composition-based stats.
Identities = 33/112 (29%), Positives = 59/112 (52%), Gaps = 5/112 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDVSPD 69
RA +V E+++ L ++ +E +D I ++I+ V +S DL+ A +Y+S+ + +
Sbjct: 5 RAQKVAEQMKKELADIL-QHELKDPRIG--FVTITRVEVSGDLQHAKIYVSVYGPEAEKE 61
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+ L FIRG I R L ++R PEL FR D S + ++ ++ K
Sbjct: 62 ATLGVLTKAAGFIRGEIARRL-HMRMAPELVFRLDESGEYSERIEHVLKSLK 112
>gi|257066117|ref|YP_003152373.1| ribosome-binding factor A [Anaerococcus prevotii DSM 20548]
gi|256797997|gb|ACV28652.1| ribosome-binding factor A [Anaerococcus prevotii DSM 20548]
Length = 128
Score = 126 bits (318), Expect = 1e-27, Method: Composition-based stats.
Identities = 33/114 (28%), Positives = 62/114 (54%), Gaps = 4/114 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISR-DVISISEVCMSVDLRVATVYISLPLD 65
N RR R+ EV+ L ++ ++ D +S +++I++V ++ DL A Y+S+ D
Sbjct: 1 MNKRRTERISSEVKKELSKIL-RDDLNDPRLSTEAMVTITDVEVTNDLSYADCYVSVLGD 59
Query: 66 VS-PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ + V+ AL +I+ IG +R LR +PE RF+ D S++ ++ L+
Sbjct: 60 ATNKEDVLEALEQAKGYIKILIGERMR-LRSMPEFRFKIDNSIEHGAYMDKLIA 112
>gi|282916530|ref|ZP_06324288.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
D139]
gi|283770334|ref|ZP_06343226.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus H19]
gi|282319017|gb|EFB49369.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
D139]
gi|283460481|gb|EFC07571.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus H19]
Length = 119
Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats.
Identities = 36/116 (31%), Positives = 65/116 (56%), Gaps = 5/116 (4%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-D 65
+S RA RVGE+++ LM +I NN+ +D + I+I++V ++ DL A V++++ D
Sbjct: 4 MSSMRAERVGEQMKKELMDII-NNKVKDPRVG--FITITDVVLTNDLSQAKVFLTVLGND 60
Query: 66 VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+ AL+ FI+ +G +R LR +PEL + YD S++ K+ ++
Sbjct: 61 KEVENTFKALDKAKGFIKSELGSRMR-LRIMPELMYEYDQSIEYGNKIERMIQDLH 115
>gi|188586071|ref|YP_001917616.1| ribosome-binding factor A [Natranaerobius thermophilus JW/NM-WN-LF]
gi|229568641|sp|B2A398|RBFA_NATTJ RecName: Full=Ribosome-binding factor A
gi|179350758|gb|ACB85028.1| ribosome-binding factor A [Natranaerobius thermophilus JW/NM-WN-LF]
Length = 131
Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 61/118 (51%), Gaps = 5/118 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS-PD 69
R ++ EE++ + ++ E +D + ++++ V +S DLR A V++S+ +
Sbjct: 5 RKEKLQEELKKIISDILQR-EVKDPSVG--FVTVTSVDLSGDLRHAKVFVSILGEKENQQ 61
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALE 127
+ L FIR +G+ +R LR+VPE+ F++D S++ +N L+ + E
Sbjct: 62 DSLRGLEKATGFIRSELGKRVR-LRHVPEIVFKFDESIEHGDHINKLLKQMNLGEDNE 118
>gi|23099055|ref|NP_692521.1| ribosome-binding factor A [Oceanobacillus iheyensis HTE831]
gi|29427761|sp|Q8EQT9|RBFA_OCEIH RecName: Full=Ribosome-binding factor A
gi|22777283|dbj|BAC13556.1| ribosome-binding factor A [Oceanobacillus iheyensis HTE831]
Length = 113
Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats.
Identities = 29/110 (26%), Positives = 58/110 (52%), Gaps = 5/110 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV-SPD 69
RA R+ E+++ L ++ + +D + +++++V ++ DL+ A VYIS+ D
Sbjct: 5 RAHRIAEQMKKELGEILSR-KIKDPRVG--FVTVTDVEVTGDLQQAKVYISVLGDEKKKQ 61
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ L+ FIR IG +R LR PE+ F +D +L+ ++ ++
Sbjct: 62 DTLLGLSKAKGFIRSEIGNRIR-LRKTPEITFEFDEALEQGNRIETILRD 110
>gi|77359944|ref|YP_339519.1| ribosome-binding factor A, role in processing of 16S rRNA
[Pseudoalteromonas haloplanktis TAC125]
gi|123588866|sp|Q3IJ52|RBFA_PSEHT RecName: Full=Ribosome-binding factor A
gi|76874855|emb|CAI86076.1| ribosome-binding factor A, role in processing of 16S rRNA
[Pseudoalteromonas haloplanktis TAC125]
Length = 166
Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats.
Identities = 31/116 (26%), Positives = 61/116 (52%), Gaps = 7/116 (6%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-- 64
+ R RV ++++ + VIL E +D + ++++S V +S DL A ++I++
Sbjct: 2 REFSRTDRVAQQIQKEIA-VILQREIKDPRLG--MVTVSAVEVSRDLSYAKIFITVFNTQ 58
Query: 65 -DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
D + + + LN +IR +G+ +R R +PEL+F D SL +++ L+
Sbjct: 59 DDNAAKQSANVLNEATGYIRSLLGKRIRA-RIMPELKFLVDNSLMEGMRISNLVDS 113
>gi|229918670|ref|YP_002887316.1| ribosome-binding factor A [Exiguobacterium sp. AT1b]
gi|229470099|gb|ACQ71871.1| ribosome-binding factor A [Exiguobacterium sp. AT1b]
Length = 115
Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats.
Identities = 35/111 (31%), Positives = 56/111 (50%), Gaps = 6/111 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS--P 68
RA RV E++R + V+L E D +I+ V ++ DL+ ATVY ++ D
Sbjct: 4 RAQRVAEQMRKEITDVLLR-EVSDPRTKNA--TITSVDVTGDLQQATVYYTVLGDEEDVK 60
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ L+ FIR IG +R LR PE+ F YD+S+ +++L+
Sbjct: 61 AETQAGLDKAKGFIRREIGNRIR-LRKTPEISFEYDSSVAYGSHIDSLIRD 110
>gi|187933507|ref|YP_001885472.1| ribosome-binding factor A [Clostridium botulinum B str. Eklund 17B]
gi|238691621|sp|B2TJ56|RBFA_CLOBB RecName: Full=Ribosome-binding factor A
gi|187721660|gb|ACD22881.1| ribosome-binding factor A [Clostridium botulinum B str. Eklund 17B]
Length = 116
Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats.
Identities = 31/113 (27%), Positives = 59/113 (52%), Gaps = 5/113 (4%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-- 64
+ R R+ EE + + +I NE +D + +IS+++V ++ DL+ A VY+S+
Sbjct: 1 MPNYRGGRINEEFKREISNII-QNEIKDPRL-TAMISVTDVKVTKDLKYAKVYVSIFSTK 58
Query: 65 DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ +AL FIR +G+ + N+R+ PE+ F D S+ ++ L+
Sbjct: 59 EEEKKDNFTALKSASGFIRKILGQRI-NVRHNPEILFELDDSINYAMHIDELI 110
>gi|167644011|ref|YP_001681674.1| ribosome-binding factor A [Caulobacter sp. K31]
gi|189039531|sp|B0T172|RBFA_CAUSK RecName: Full=Ribosome-binding factor A
gi|167346441|gb|ABZ69176.1| ribosome-binding factor A [Caulobacter sp. K31]
Length = 164
Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats.
Identities = 37/148 (25%), Positives = 74/148 (50%), Gaps = 22/148 (14%)
Query: 2 KNKNP-KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
K P S+R LR GE +R AL+ ++ + D ++ ++ISEV MS DL+ A ++
Sbjct: 8 KKSGPVGPSQRQLRAGELIRHALVDILREEDLVDPALAGISVTISEVRMSADLKHAICFV 67
Query: 61 --------------------SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELR 100
++ + SP V++ L KF+RG++ +++ ++++ PEL+
Sbjct: 68 EPLGASIAPQVEREPSSPSRTVVVPGSPAEVVAGLTRLTKFLRGKLAKTI-DMKFTPELK 126
Query: 101 FRYDTSLQSYWKLNALMCLPKIPVALEK 128
F +D + S ++ L P++ + +
Sbjct: 127 FLHDETFNSATYMDRLFEDPRVQQDVRR 154
>gi|123440814|ref|YP_001004805.1| ribosome-binding factor A [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|166199574|sp|A1JIX0|RBFA_YERE8 RecName: Full=Ribosome-binding factor A
gi|122087775|emb|CAL10561.1| ribosome-binding factor A [Yersinia enterocolitica subsp.
enterocolitica 8081]
Length = 136
Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats.
Identities = 39/130 (30%), Positives = 67/130 (51%), Gaps = 12/130 (9%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL- 64
K R+ RV +E++ + +IL E +D + + ++S + +S DL A V+++
Sbjct: 2 AKEFSRSQRVSQEMQKEIA-LILQREIKDPRVG--MATVSGIELSRDLAYAKVFVTFLNV 58
Query: 65 ---DVSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ PD V I AL +IR +G+++R LR VPEL F YD SL +++ L+
Sbjct: 59 LTDNADPDTVKNGIKALQDASGYIRTLLGKAMR-LRIVPELTFAYDNSLIEGMRMSNLVT 117
Query: 119 LPKIPVALEK 128
I +E+
Sbjct: 118 N-VIKNDVER 126
>gi|291532982|emb|CBL06095.1| ribosome-binding factor A [Megamonas hypermegale ART12/1]
Length = 118
Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats.
Identities = 36/123 (29%), Positives = 63/123 (51%), Gaps = 7/123 (5%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-D 65
S R +V E ++ +I+ E +D I ++I+EV +S DL A +Y+S+ D
Sbjct: 1 MGSVRIEKVQELIKQEASEIIMR-ELKDPRIG--FVTITEVDVSSDLHNAKLYVSILGSD 57
Query: 66 VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
+ LN ++ FIR + +R L+++PE++F DTSLQ + L+ K+
Sbjct: 58 KQIEDTWKGLNSSLGFIRRELAHRIR-LKFIPEIKFFMDTSLQYSAHIQELLI--KVQKD 114
Query: 126 LEK 128
E+
Sbjct: 115 EEQ 117
>gi|37199640|dbj|BAC95471.1| ribosome-binding factor A [Vibrio vulnificus YJ016]
Length = 148
Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats.
Identities = 34/119 (28%), Positives = 66/119 (55%), Gaps = 6/119 (5%)
Query: 2 KNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS 61
+ K+ R RV ++++ L +IL E +D + +++IS+V +S DL A V+++
Sbjct: 15 RKDMSKDFSRTQRVSQQLQKELA-MILQREVRDSRLG--MVTISDVEVSRDLAYAKVFVT 71
Query: 62 LP--LDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ +P+ ++AL + IR +G+ +R LR PE+RF YD +L +++ L+
Sbjct: 72 FLCVGEQTPESCLAALREHEVHIRMMLGKRIR-LRLTPEVRFYYDNTLVEGMRMSNLVT 129
>gi|119470823|ref|ZP_01613434.1| ribosome-binding factor A, role in processing of 16S rRNA
[Alteromonadales bacterium TW-7]
gi|119446050|gb|EAW27329.1| ribosome-binding factor A, role in processing of 16S rRNA
[Alteromonadales bacterium TW-7]
Length = 148
Score = 125 bits (316), Expect = 1e-27, Method: Composition-based stats.
Identities = 32/114 (28%), Positives = 60/114 (52%), Gaps = 7/114 (6%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
+ R RVG++++ + VIL E +D + ++++S V +S DL A ++I++
Sbjct: 2 REFSRTDRVGQQIQKEIA-VILQREIKDPRLG--MVTVSAVEVSRDLSYAKIFITVFNTK 58
Query: 67 SPD---RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
D + LN +IR +G+ +R R +PEL+F D SL +++ L+
Sbjct: 59 DEDAAKQSAKVLNEATGYIRSLLGKRIRA-RIMPELKFVVDNSLMEGMRISNLV 111
>gi|302392346|ref|YP_003828166.1| ribosome-binding factor A [Acetohalobium arabaticum DSM 5501]
gi|302204423|gb|ADL13101.1| ribosome-binding factor A [Acetohalobium arabaticum DSM 5501]
Length = 122
Score = 125 bits (316), Expect = 1e-27, Method: Composition-based stats.
Identities = 30/110 (27%), Positives = 61/110 (55%), Gaps = 5/110 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-DVSPD 69
R RV E ++ + ++ E +D I ++I++V +S DLR A V++S+ + + +
Sbjct: 5 RPRRVAELIKKEVSQMLQQ-EIKDPRIG--FVTITDVEVSEDLRHAKVFVSVLDAEETKE 61
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ L + +IR +G+ +R LR+ PE+ FRYD S++ ++ ++
Sbjct: 62 ETMEGLENAVGYIRRELGQRIR-LRHTPEILFRYDDSIKRGARIFEILKD 110
>gi|51594833|ref|YP_069024.1| ribosome-binding factor A [Yersinia pseudotuberculosis IP 32953]
gi|108806043|ref|YP_649959.1| ribosome-binding factor A [Yersinia pestis Antiqua]
gi|108813399|ref|YP_649166.1| ribosome-binding factor A [Yersinia pestis Nepal516]
gi|145600791|ref|YP_001164867.1| ribosome-binding factor A [Yersinia pestis Pestoides F]
gi|153946906|ref|YP_001402549.1| ribosome-binding factor A [Yersinia pseudotuberculosis IP 31758]
gi|153997272|ref|ZP_02022372.1| ribosome-binding factor A [Yersinia pestis CA88-4125]
gi|161484875|ref|NP_668026.2| ribosome-binding factor A [Yersinia pestis KIM 10]
gi|161511439|ref|NP_991981.2| ribosome-binding factor A [Yersinia pestis biovar Microtus str.
91001]
gi|162419142|ref|YP_001608287.1| ribosome-binding factor A [Yersinia pestis Angola]
gi|165925682|ref|ZP_02221514.1| ribosome-binding factor A [Yersinia pestis biovar Orientalis str.
F1991016]
gi|165936784|ref|ZP_02225351.1| ribosome-binding factor A [Yersinia pestis biovar Orientalis str.
IP275]
gi|166010165|ref|ZP_02231063.1| ribosome-binding factor A [Yersinia pestis biovar Antiqua str.
E1979001]
gi|166214622|ref|ZP_02240657.1| ribosome-binding factor A [Yersinia pestis biovar Antiqua str.
B42003004]
gi|167401225|ref|ZP_02306725.1| ribosome-binding factor A [Yersinia pestis biovar Antiqua str.
UG05-0454]
gi|167420727|ref|ZP_02312480.1| ribosome-binding factor A [Yersinia pestis biovar Orientalis str.
MG05-1020]
gi|167423323|ref|ZP_02315076.1| ribosome-binding factor A [Yersinia pestis biovar Mediaevalis str.
K1973002]
gi|167470845|ref|ZP_02335549.1| ribosome-binding factor A [Yersinia pestis FV-1]
gi|170025944|ref|YP_001722449.1| ribosome-binding factor A [Yersinia pseudotuberculosis YPIII]
gi|186893842|ref|YP_001870954.1| ribosome-binding factor A [Yersinia pseudotuberculosis PB1/+]
gi|218930509|ref|YP_002348384.1| ribosome-binding factor A [Yersinia pestis CO92]
gi|229839147|ref|ZP_04459306.1| 30s ribosome binding factor [Yersinia pestis biovar Orientalis str.
PEXU2]
gi|229896636|ref|ZP_04511803.1| 30s ribosome binding factor [Yersinia pestis Pestoides A]
gi|229899711|ref|ZP_04514852.1| 30s ribosome binding factor [Yersinia pestis biovar Orientalis str.
India 195]
gi|229903873|ref|ZP_04518986.1| 30s ribosome binding factor [Yersinia pestis Nepal516]
gi|270489137|ref|ZP_06206211.1| ribosome-binding factor A [Yersinia pestis KIM D27]
gi|294505372|ref|YP_003569434.1| ribosome-binding factor A [Yersinia pestis Z176003]
gi|20978601|sp|Q8ZBC3|RBFA_YERPE RecName: Full=Ribosome-binding factor A
gi|61214873|sp|Q66F59|RBFA_YERPS RecName: Full=Ribosome-binding factor A
gi|122383880|sp|Q1CC08|RBFA_YERPA RecName: Full=Ribosome-binding factor A
gi|122384217|sp|Q1CEL4|RBFA_YERPN RecName: Full=Ribosome-binding factor A
gi|166199575|sp|A4TRI2|RBFA_YERPP RecName: Full=Ribosome-binding factor A
gi|166918680|sp|A7FMS1|RBFA_YERP3 RecName: Full=Ribosome-binding factor A
gi|226723614|sp|A9R5A4|RBFA_YERPG RecName: Full=Ribosome-binding factor A
gi|238688456|sp|B1JLX9|RBFA_YERPY RecName: Full=Ribosome-binding factor A
gi|238691363|sp|B2K2Q6|RBFA_YERPB RecName: Full=Ribosome-binding factor A
gi|51588115|emb|CAH19721.1| ribosome-binding factor A [Yersinia pseudotuberculosis IP 32953]
gi|108777047|gb|ABG19566.1| ribosome-binding factor A [Yersinia pestis Nepal516]
gi|108777956|gb|ABG12014.1| ribosome-binding factor A [Yersinia pestis Antiqua]
gi|115349120|emb|CAL22083.1| ribosome-binding factor A [Yersinia pestis CO92]
gi|145212487|gb|ABP41894.1| ribosome-binding factor A [Yersinia pestis Pestoides F]
gi|149288909|gb|EDM38989.1| ribosome-binding factor A [Yersinia pestis CA88-4125]
gi|152958401|gb|ABS45862.1| ribosome-binding factor A [Yersinia pseudotuberculosis IP 31758]
gi|162351957|gb|ABX85905.1| ribosome-binding factor A [Yersinia pestis Angola]
gi|165915433|gb|EDR34043.1| ribosome-binding factor A [Yersinia pestis biovar Orientalis str.
IP275]
gi|165922294|gb|EDR39471.1| ribosome-binding factor A [Yersinia pestis biovar Orientalis str.
F1991016]
gi|165991072|gb|EDR43373.1| ribosome-binding factor A [Yersinia pestis biovar Antiqua str.
E1979001]
gi|166204197|gb|EDR48677.1| ribosome-binding factor A [Yersinia pestis biovar Antiqua str.
B42003004]
gi|166961533|gb|EDR57554.1| ribosome-binding factor A [Yersinia pestis biovar Orientalis str.
MG05-1020]
gi|167049250|gb|EDR60658.1| ribosome-binding factor A [Yersinia pestis biovar Antiqua str.
UG05-0454]
gi|167057493|gb|EDR67239.1| ribosome-binding factor A [Yersinia pestis biovar Mediaevalis str.
K1973002]
gi|169752478|gb|ACA69996.1| ribosome-binding factor A [Yersinia pseudotuberculosis YPIII]
gi|186696868|gb|ACC87497.1| ribosome-binding factor A [Yersinia pseudotuberculosis PB1/+]
gi|229679643|gb|EEO75746.1| 30s ribosome binding factor [Yersinia pestis Nepal516]
gi|229687203|gb|EEO79278.1| 30s ribosome binding factor [Yersinia pestis biovar Orientalis str.
India 195]
gi|229695513|gb|EEO85560.1| 30s ribosome binding factor [Yersinia pestis biovar Orientalis str.
PEXU2]
gi|229700414|gb|EEO88446.1| 30s ribosome binding factor [Yersinia pestis Pestoides A]
gi|262363438|gb|ACY60159.1| ribosome-binding factor A [Yersinia pestis D106004]
gi|262367187|gb|ACY63744.1| ribosome-binding factor A [Yersinia pestis D182038]
gi|270337641|gb|EFA48418.1| ribosome-binding factor A [Yersinia pestis KIM D27]
gi|294355831|gb|ADE66172.1| ribosome-binding factor A [Yersinia pestis Z176003]
gi|320013698|gb|ADV97269.1| 30s ribosome binding factor [Yersinia pestis biovar Medievalis str.
Harbin 35]
Length = 136
Score = 125 bits (316), Expect = 1e-27, Method: Composition-based stats.
Identities = 39/130 (30%), Positives = 67/130 (51%), Gaps = 12/130 (9%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL- 64
K R+ RV +E++ + +IL E +D + + ++S + +S DL A V+++
Sbjct: 2 AKEFSRSQRVSQEMQKEIA-LILQREIKDPRVG--MATVSGIELSRDLAYAKVFVTFLNV 58
Query: 65 ---DVSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ PD V I AL +IR +G+++R LR VPEL F YD SL +++ L+
Sbjct: 59 LTDNADPDTVKNGIKALQDASGYIRTLLGKAMR-LRIVPELTFAYDNSLIEGMRMSNLVS 117
Query: 119 LPKIPVALEK 128
I +E+
Sbjct: 118 N-VIKNDVER 126
>gi|71736021|ref|YP_276310.1| ribosome-binding factor A [Pseudomonas syringae pv. phaseolicola
1448A]
gi|257482260|ref|ZP_05636301.1| ribosome-binding factor A [Pseudomonas syringae pv. tabaci ATCC
11528]
gi|289627534|ref|ZP_06460488.1| ribosome-binding factor A [Pseudomonas syringae pv. aesculi str.
NCPPB3681]
gi|289646962|ref|ZP_06478305.1| ribosome-binding factor A [Pseudomonas syringae pv. aesculi str.
2250]
gi|298488457|ref|ZP_07006488.1| Ribosome-binding factor A [Pseudomonas savastanoi pv. savastanoi
NCPPB 3335]
gi|123635189|sp|Q48E78|RBFA_PSE14 RecName: Full=Ribosome-binding factor A
gi|71556574|gb|AAZ35785.1| ribosome-binding factor A [Pseudomonas syringae pv. phaseolicola
1448A]
gi|298157082|gb|EFH98171.1| Ribosome-binding factor A [Pseudomonas savastanoi pv. savastanoi
NCPPB 3335]
gi|320322527|gb|EFW78620.1| ribosome-binding factor A [Pseudomonas syringae pv. glycinea str.
B076]
gi|320330004|gb|EFW85991.1| ribosome-binding factor A [Pseudomonas syringae pv. glycinea str.
race 4]
gi|330868247|gb|EGH02956.1| ribosome-binding factor A [Pseudomonas syringae pv. aesculi str.
0893_23]
gi|330987056|gb|EGH85159.1| ribosome-binding factor A [Pseudomonas syringae pv. lachrymans str.
M301315]
Length = 138
Score = 125 bits (316), Expect = 2e-27, Method: Composition-based stats.
Identities = 32/126 (25%), Positives = 64/126 (50%), Gaps = 8/126 (6%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K R R+G++++ L +I E +D + +++I+ V +S D+ A +++++
Sbjct: 2 AKEYSRTQRIGDQMQRELAQLI-RREIKDPRVG--LVTITAVDVSRDVGHAKIFMTVMGQ 58
Query: 66 VSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
S + + I LN F+R ++ R ++ LR VP+L F YD S+ L+AL+ +
Sbjct: 59 DSAEEIAQTIKVLNSAAGFLRMQLAREMK-LRSVPQLHFHYDESVVRGAHLSALIER-AV 116
Query: 123 PVALEK 128
+
Sbjct: 117 AQDGQH 122
>gi|229824771|ref|ZP_04450840.1| hypothetical protein GCWU000182_00120 [Abiotrophia defectiva ATCC
49176]
gi|229791100|gb|EEP27214.1| hypothetical protein GCWU000182_00120 [Abiotrophia defectiva ATCC
49176]
Length = 128
Score = 125 bits (316), Expect = 2e-27, Method: Composition-based stats.
Identities = 37/122 (30%), Positives = 67/122 (54%), Gaps = 4/122 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
KNS + +R+ EV+ AL +I +D +S + S+++V ++ DL+ A V++S+ D
Sbjct: 3 KNSIKNVRINSEVQRALSELIRMG-VKDPRVSS-LTSVTDVEVAPDLKTAKVFVSVLGDE 60
Query: 67 SPD-RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
+ L + ++R ++ +S+ NLR PELRF DTS++ ++AL+ K
Sbjct: 61 KKQKDTLEGLKSAMPYLRSQLAKSI-NLRNTPELRFHLDTSIEYGMHMSALINQVKAKDK 119
Query: 126 LE 127
E
Sbjct: 120 AE 121
>gi|224825866|ref|ZP_03698970.1| ribosome-binding factor A [Lutiella nitroferrum 2002]
gi|224602090|gb|EEG08269.1| ribosome-binding factor A [Lutiella nitroferrum 2002]
Length = 132
Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats.
Identities = 27/116 (23%), Positives = 54/116 (46%), Gaps = 4/116 (3%)
Query: 4 KNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP 63
+ K RA R+ E+++ L ++ +D I+I+ V ++ D A +Y ++
Sbjct: 3 RAKKGFSRADRISEQIQRELAELLRKG-LKDPR--AGWITITSVEVTRDYSHAKIYYTVM 59
Query: 64 LDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
D + + AL ++R +GR+L + P+L F YD S++ + L+
Sbjct: 60 DDKTREVTQEALEHAAGYLRSELGRAL-QIFTTPQLHFVYDESIERGMHMTRLINQ 114
>gi|332160080|ref|YP_004296657.1| ribosome-binding factor A [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|318607360|emb|CBY28858.1| ribosome-binding factor A [Yersinia enterocolitica subsp.
palearctica Y11]
gi|325664310|gb|ADZ40954.1| ribosome-binding factor A [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|330862025|emb|CBX72192.1| ribosome-binding factor A [Yersinia enterocolitica W22703]
Length = 136
Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats.
Identities = 36/130 (27%), Positives = 64/130 (49%), Gaps = 12/130 (9%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL- 64
K R+ RV +E++ + +IL E +D + + ++S + +S DL A V+++
Sbjct: 2 AKEFSRSQRVSQEMQKEIA-LILQREIKDPRVG--MATVSGIELSRDLAYAKVFVTFLNV 58
Query: 65 ------DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ I AL +IR +G+++R LR VPEL F YD SL +++ L+
Sbjct: 59 LTDNADPDTAKNGIKALQDASGYIRTLLGKAMR-LRIVPELTFAYDNSLIEGMRMSNLVT 117
Query: 119 LPKIPVALEK 128
I +E+
Sbjct: 118 N-VIKNDVER 126
>gi|220916338|ref|YP_002491642.1| ribosome-binding factor A [Anaeromyxobacter dehalogenans 2CP-1]
gi|254789727|sp|B8JFY8|RBFA_ANAD2 RecName: Full=Ribosome-binding factor A
gi|219954192|gb|ACL64576.1| ribosome-binding factor A [Anaeromyxobacter dehalogenans 2CP-1]
Length = 139
Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats.
Identities = 34/114 (29%), Positives = 54/114 (47%), Gaps = 4/114 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS-PD 69
R RV EE R L ++ +D I ++++ MS DL+ ATVY+S+ D
Sbjct: 6 RPARVAEEFRHELSAILARG-LKDPRI-TGFVTVTGSKMSPDLKEATVYVSIHGDERVRK 63
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIP 123
+ L F++ + R+LR LR P LRF YD S+ ++ L+ +
Sbjct: 64 DTFAGLQAAAGFLQREVSRALR-LRNTPHLRFVYDESVARGDRIERLLREARTQ 116
>gi|326791496|ref|YP_004309317.1| ribosome-binding factor A [Clostridium lentocellum DSM 5427]
gi|326542260|gb|ADZ84119.1| ribosome-binding factor A [Clostridium lentocellum DSM 5427]
Length = 118
Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats.
Identities = 34/111 (30%), Positives = 61/111 (54%), Gaps = 2/111 (1%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
S+R R+ EE+R + I+ ++ +D + +IS+ V + DL+ A V+IS+ D
Sbjct: 3 SQRLTRINEEMRREIAE-IVRSDIKDPGVQDAMISVIAVETTNDLKTAKVFISVLQDNKK 61
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ ++AL +IR I R + NLR PEL FR D S++ +++ ++
Sbjct: 62 EAALAALTKAQGYIRKEIARRI-NLRNTPELLFRLDESIERGMQMSKMIAD 111
>gi|260771813|ref|ZP_05880731.1| ribosome-binding factor A [Vibrio metschnikovii CIP 69.14]
gi|260613105|gb|EEX38306.1| ribosome-binding factor A [Vibrio metschnikovii CIP 69.14]
Length = 131
Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats.
Identities = 36/115 (31%), Positives = 64/115 (55%), Gaps = 6/115 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP-- 63
PK R RV ++++ L +IL E +D + +++IS+V +S DL A V+++
Sbjct: 2 PKEFSRTQRVAQQLQKELA-MILQREVRDSRLG--MVTISDVEVSRDLAYAKVFVTFLCI 58
Query: 64 LDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ +P+ I AL + IR +G+ +R LR PE+RF YD +L +++ L+
Sbjct: 59 GEQTPESCIKALREHEVHIRMMLGKRIR-LRLTPEIRFHYDNTLVEGMRMSNLVT 112
>gi|188587938|ref|YP_001920619.1| ribosome-binding factor A [Clostridium botulinum E3 str. Alaska
E43]
gi|251781062|ref|ZP_04823982.1| ribosome-binding factor A [Clostridium botulinum E1 str. 'BoNT E
Beluga']
gi|238689677|sp|B2V4H0|RBFA_CLOBA RecName: Full=Ribosome-binding factor A
gi|188498219|gb|ACD51355.1| ribosome-binding factor A [Clostridium botulinum E3 str. Alaska
E43]
gi|243085377|gb|EES51267.1| ribosome-binding factor A [Clostridium botulinum E1 str. 'BoNT E
Beluga']
Length = 116
Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats.
Identities = 32/113 (28%), Positives = 59/113 (52%), Gaps = 5/113 (4%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-- 64
+ R R+ EE + + +I NE +D + +IS+++V ++ DLR A VY+S+
Sbjct: 1 MPNYRGGRINEEFKREISNII-QNEIKDPRL-TAMISVTDVKVTKDLRYAKVYVSIFSTK 58
Query: 65 DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ +AL FIR +G+ + N+R+ PE+ F D S+ ++ L+
Sbjct: 59 EEEKKDNFTALKSASGFIRKILGQRI-NVRHNPEILFELDDSINYAMHIDELI 110
>gi|85373520|ref|YP_457582.1| ribosome-binding factor A [Erythrobacter litoralis HTCC2594]
gi|84786603|gb|ABC62785.1| ribosome-binding factor A [Erythrobacter litoralis HTCC2594]
Length = 112
Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats.
Identities = 33/108 (30%), Positives = 56/108 (51%), Gaps = 1/108 (0%)
Query: 19 VRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCN 78
+R L ++ E D +S I+++EV M+ DLR AT Y+ L D ++SAL N
Sbjct: 1 MRHILSELLARQEVHDETVSAANIAVTEVRMTPDLRNATAYVKPLLGKEEDEIVSALRQN 60
Query: 79 IKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVAL 126
+++ + + L L++ P+L FR D S ++ L+ PK+ L
Sbjct: 61 TAYLQKEVAKRL-GLKFAPKLMFRPDESFDEADRIEKLLRDPKVARDL 107
>gi|283797341|ref|ZP_06346494.1| ribosome-binding factor A [Clostridium sp. M62/1]
gi|291075013|gb|EFE12377.1| ribosome-binding factor A [Clostridium sp. M62/1]
gi|295090491|emb|CBK76598.1| ribosome-binding factor A [Clostridium cf. saccharolyticum K10]
gi|295115415|emb|CBL36262.1| ribosome-binding factor A [butyrate-producing bacterium SM4/1]
Length = 143
Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 55/122 (45%), Gaps = 6/122 (4%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
KNS + R+ EV+ L +I E +D I + ++ V ++ DL+ YIS+
Sbjct: 16 KNSIKNTRINSEVQRELSEIISR-EIKDPRIHP-MTTVVAVEVTPDLKYCKAYISVLGSE 73
Query: 67 SP-DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
I L F+R ++ + NLR PE+ F D S++ + L+ ++
Sbjct: 74 EAGKETIKGLKSAEGFVRRQLASRI-NLRNTPEITFVLDQSIEYGVNMTHLIN--EVTKD 130
Query: 126 LE 127
L+
Sbjct: 131 LD 132
>gi|28871623|ref|NP_794242.1| ribosome-binding factor A [Pseudomonas syringae pv. tomato str.
DC3000]
gi|213966646|ref|ZP_03394797.1| ribosome-binding factor A [Pseudomonas syringae pv. tomato T1]
gi|301383156|ref|ZP_07231574.1| ribosome-binding factor A [Pseudomonas syringae pv. tomato Max13]
gi|302063409|ref|ZP_07254950.1| ribosome-binding factor A [Pseudomonas syringae pv. tomato K40]
gi|302133782|ref|ZP_07259772.1| ribosome-binding factor A [Pseudomonas syringae pv. tomato NCPPB
1108]
gi|32171593|sp|Q87WQ6|RBFA_PSESM RecName: Full=Ribosome-binding factor A
gi|28854875|gb|AAO57937.1| ribosome-binding factor A [Pseudomonas syringae pv. tomato str.
DC3000]
gi|213928496|gb|EEB62040.1| ribosome-binding factor A [Pseudomonas syringae pv. tomato T1]
gi|330963976|gb|EGH64236.1| ribosome-binding factor A [Pseudomonas syringae pv. actinidiae str.
M302091]
gi|331016649|gb|EGH96705.1| ribosome-binding factor A [Pseudomonas syringae pv. lachrymans str.
M302278PT]
Length = 138
Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats.
Identities = 31/126 (24%), Positives = 64/126 (50%), Gaps = 8/126 (6%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K R R+G++++ L +I E +D + +++I+ V +S D+ A +++++
Sbjct: 2 AKEYSRTQRIGDQMQRELAQLI-RREIKDPRVG--LVTITAVDVSRDVGHAKIFMTVMGQ 58
Query: 66 VSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
+ + + I LN F+R ++ R ++ LR VP+L F YD S+ L+AL+ +
Sbjct: 59 DNAEDIAQTIKVLNAAAGFLRMQLAREMK-LRSVPQLHFHYDESVVRGAHLSALIER-AV 116
Query: 123 PVALEK 128
+
Sbjct: 117 AQDSQH 122
>gi|154497686|ref|ZP_02036064.1| hypothetical protein BACCAP_01662 [Bacteroides capillosus ATCC
29799]
gi|150273184|gb|EDN00329.1| hypothetical protein BACCAP_01662 [Bacteroides capillosus ATCC
29799]
Length = 129
Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats.
Identities = 31/114 (27%), Positives = 59/114 (51%), Gaps = 4/114 (3%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
S R R+ EE++ L +I +D + ++SI+ V + DLR A +++S+
Sbjct: 3 SNRIGRINEEIQRELSGLI--RTVKDPRVHG-LVSITAVDTTTDLRYAKIHVSVLDKSDV 59
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
+ V+ L ++R +G +L +LRY PEL F D S+ + +++ P++
Sbjct: 60 NEVVKGLKSAAGYLRRELGAAL-SLRYTPELIFEKDDSMAQGAHILSMLRDPEV 112
>gi|325290359|ref|YP_004266540.1| ribosome-binding factor A [Syntrophobotulus glycolicus DSM 8271]
gi|324965760|gb|ADY56539.1| ribosome-binding factor A [Syntrophobotulus glycolicus DSM 8271]
Length = 124
Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats.
Identities = 34/113 (30%), Positives = 64/113 (56%), Gaps = 5/113 (4%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
R++R+ E ++ + +IL E +D I I++++V ++ DLR A +Y+S+
Sbjct: 1 MGKHRSVRLAETIKEEVARIIL-EEIKDPRIG--FITLTDVEVAEDLRYAKLYVSIMGSE 57
Query: 67 SP-DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ ALN F+R +G+++R LRYVPE+ F+YD S++ ++ L+
Sbjct: 58 EEVKNSLEALNRASGFVRSELGKTVR-LRYVPEISFKYDQSIEQGAHISKLLR 109
>gi|164688517|ref|ZP_02212545.1| hypothetical protein CLOBAR_02162 [Clostridium bartlettii DSM
16795]
gi|164602930|gb|EDQ96395.1| hypothetical protein CLOBAR_02162 [Clostridium bartlettii DSM
16795]
Length = 127
Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats.
Identities = 27/110 (24%), Positives = 62/110 (56%), Gaps = 4/110 (3%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS 67
++ R R+ EE+R + +++N +D I+ ++S+++V ++ DL A +Y+S+
Sbjct: 3 SNNRTRRIAEEIRKIVSTMLING-IKDPRINS-LVSVTDVEVTSDLSYAYIYVSILGG-D 59
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ + L +IR +G++++ +R+ PE+ F+ D SL ++ L+
Sbjct: 60 EESTLDGLKSACGYIRREVGKNIK-IRHTPEIIFKIDDSLLKGMYMDELI 108
>gi|330958048|gb|EGH58308.1| ribosome-binding factor A [Pseudomonas syringae pv. maculicola str.
ES4326]
Length = 138
Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats.
Identities = 31/126 (24%), Positives = 64/126 (50%), Gaps = 8/126 (6%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K R R+G++++ L +I E +D + +++I+ V +S D+ A +++++
Sbjct: 2 AKEYSRTQRIGDQMQRELAQLI-RREIKDPRVG--LVTITAVDVSRDVGHAKIFMTVMGQ 58
Query: 66 VSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
+ + + I LN F+R ++ R ++ LR VP+L F YD S+ L+AL+ +
Sbjct: 59 DNAEDIAQTIKVLNAAAGFLRMQLAREMK-LRSVPQLHFHYDESVVRGAHLSALIER-AV 116
Query: 123 PVALEK 128
+
Sbjct: 117 AQDSQH 122
>gi|323701867|ref|ZP_08113537.1| ribosome-binding factor A [Desulfotomaculum nigrificans DSM 574]
gi|323533171|gb|EGB23040.1| ribosome-binding factor A [Desulfotomaculum nigrificans DSM 574]
Length = 120
Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats.
Identities = 29/110 (26%), Positives = 58/110 (52%), Gaps = 5/110 (4%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVS 67
S R R+ E ++ + +I E +D + ++I+ V ++ DL A +++S + D
Sbjct: 2 SHRPERLAEAIKKEIADLI-RTEIKDPRVG--FVTITGVEVTRDLSYAKIFVSVMGSDDQ 58
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
++ L ++R +GR ++ +R+VPEL F+ DTSL ++ L+
Sbjct: 59 RKETMAVLQKAAGYMRSEVGRRIK-VRHVPELMFKLDTSLDHGTRIMELL 107
>gi|117620712|ref|YP_857793.1| ribosome-binding factor A [Aeromonas hydrophila subsp. hydrophila
ATCC 7966]
gi|166218415|sp|A0KNE2|RBFA_AERHH RecName: Full=Ribosome-binding factor A
gi|117562119|gb|ABK39067.1| ribosome-binding factor A [Aeromonas hydrophila subsp. hydrophila
ATCC 7966]
Length = 144
Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats.
Identities = 38/118 (32%), Positives = 66/118 (55%), Gaps = 8/118 (6%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP-L 64
+ R RVG++++ + +IL E +D I ++++S+V +S DL A VY++ L
Sbjct: 2 AREFSRTRRVGQQIQREIA-LILQREVKDPRIG--MVTVSDVEVSRDLNYAKVYVTFLQL 58
Query: 65 DVSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ +R+ + AL +IR +G ++R LR VPELRF YD +L +L+ L+
Sbjct: 59 ENDAERIKEGLKALTEAAGYIRSLLGSAMR-LRVVPELRFFYDQTLVEGMRLSNLVTN 115
>gi|332532412|ref|ZP_08408290.1| ribosome-binding factor A [Pseudoalteromonas haloplanktis ANT/505]
gi|332038055|gb|EGI74502.1| ribosome-binding factor A [Pseudoalteromonas haloplanktis ANT/505]
Length = 160
Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats.
Identities = 31/116 (26%), Positives = 59/116 (50%), Gaps = 7/116 (6%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
+ R RV ++++ + VIL E +D + ++++S V +S DL A ++I++
Sbjct: 2 REFSRTDRVAQQIQKEIA-VILQREIKDPRLG--MVTVSAVEVSRDLSYAKIFITVFNTQ 58
Query: 67 SPD---RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
D + LN +IR +G+ +R R +PEL+F D SL +++ L+
Sbjct: 59 DEDAAKQSAKVLNEATGYIRSLLGKRIRA-RIMPELKFVVDNSLMEGMRISNLVDS 113
>gi|237798564|ref|ZP_04587025.1| ribosome-binding factor A [Pseudomonas syringae pv. oryzae str.
1_6]
gi|331021417|gb|EGI01474.1| ribosome-binding factor A [Pseudomonas syringae pv. oryzae str.
1_6]
Length = 138
Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats.
Identities = 31/126 (24%), Positives = 64/126 (50%), Gaps = 8/126 (6%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K R R+G++++ L +I E +D + +++I+ V +S D+ A +++++
Sbjct: 2 AKEYSRTQRIGDQMQRELAQLI-RREIKDPRVG--LVTITAVDVSRDVGHAKIFMTVMGQ 58
Query: 66 VSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
+ + + I LN F+R ++ R ++ LR VP+L F YD S+ L+AL+ +
Sbjct: 59 DNAEDIAQTIKVLNSAAGFLRMQLAREMK-LRSVPQLHFHYDESVVRGAHLSALIER-AV 116
Query: 123 PVALEK 128
+
Sbjct: 117 AEDGQH 122
>gi|254519183|ref|ZP_05131239.1| ribosome-binding factor A [Clostridium sp. 7_2_43FAA]
gi|226912932|gb|EEH98133.1| ribosome-binding factor A [Clostridium sp. 7_2_43FAA]
Length = 116
Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats.
Identities = 35/113 (30%), Positives = 60/113 (53%), Gaps = 5/113 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL--DVSP 68
R R+ EEVR + VI+ +E +D + ++SI+ V ++ DLR A V++S+ +
Sbjct: 5 RGGRINEEVRREIS-VIIRDEIKDPRM-TAMVSITAVKVTKDLRYAKVFVSIFGKNEDEK 62
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+ +AL +IR IG+ + NLR P++ F D S+ K+ L+ K
Sbjct: 63 NETFAALKSASGYIRKEIGQRI-NLRNTPQILFELDDSISYSMKIEELIEKAK 114
>gi|312963082|ref|ZP_07777567.1| Ribosome-binding factor A [Pseudomonas fluorescens WH6]
gi|311282593|gb|EFQ61189.1| Ribosome-binding factor A [Pseudomonas fluorescens WH6]
Length = 131
Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats.
Identities = 32/126 (25%), Positives = 64/126 (50%), Gaps = 8/126 (6%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K R R+G++++ L +I E +D + +++I+ V +S D+ A ++I++
Sbjct: 2 AKEYSRTQRIGDQMQRELAQLI-RREVKDPRVG--LVTITAVEVSRDVGHAKIFITVMGQ 58
Query: 66 VSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
+ + + I LN F+R ++ R ++ LR VP+L F YD S+ L+AL+ +
Sbjct: 59 DNSEEIAQSIKVLNSAAGFLRMQLAREMK-LRSVPQLHFHYDESVVRGAHLSALIER-AV 116
Query: 123 PVALEK 128
+
Sbjct: 117 AEDSQH 122
>gi|331269627|ref|YP_004396119.1| ribosome-binding factor A [Clostridium botulinum BKT015925]
gi|329126177|gb|AEB76122.1| ribosome-binding factor A [Clostridium botulinum BKT015925]
Length = 121
Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats.
Identities = 33/112 (29%), Positives = 58/112 (51%), Gaps = 4/112 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV-SPD 69
R R+ EEVR + +I ++ D + ++SI+ V ++ DLR A V+IS+ S
Sbjct: 5 RLGRINEEVRKEISNII-RDDIHDPRL-TAMVSITRVEVTNDLRYAKVFISVFGSESSKK 62
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+ AL ++ F+R +G ++ LR PE+ D S++ +N L+ K
Sbjct: 63 ETLEALKSSVGFMRREVGHRVK-LRCTPEIILELDESIEHGMHINDLLSNLK 113
>gi|254487255|ref|ZP_05100460.1| ribosome-binding factor A [Roseobacter sp. GAI101]
gi|214044124|gb|EEB84762.1| ribosome-binding factor A [Roseobacter sp. GAI101]
Length = 136
Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats.
Identities = 29/113 (25%), Positives = 55/113 (48%), Gaps = 1/113 (0%)
Query: 15 VGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISA 74
+GE +R AL V+ + D ++R I++ EV S DL++AT ++ D V+
Sbjct: 1 MGETIRRALSEVLARGDVHDPELNRMSITVGEVRASPDLKIATAFVLPLGGEGRDEVLKL 60
Query: 75 LNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALE 127
L N +R ++ + L L++ P+LRF+ D + + ++ + E
Sbjct: 61 LARNKGELRRQLSKKL-VLKFAPDLRFQLDETFDRMDETRRMLAQDVVRRDAE 112
>gi|197121575|ref|YP_002133526.1| ribosome-binding factor A [Anaeromyxobacter sp. K]
gi|238689882|sp|B4UHG2|RBFA_ANASK RecName: Full=Ribosome-binding factor A
gi|196171424|gb|ACG72397.1| ribosome-binding factor A [Anaeromyxobacter sp. K]
Length = 138
Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats.
Identities = 34/114 (29%), Positives = 54/114 (47%), Gaps = 4/114 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS-PD 69
R RV EE R L ++ +D I ++++ MS DL+ ATVY+S+ D
Sbjct: 6 RPARVAEEFRHELSAILARG-LKDPRI-TGFVTVTGSKMSPDLKEATVYVSIHGDERVRK 63
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIP 123
+ L F++ + R+LR LR P LRF YD S+ ++ L+ +
Sbjct: 64 DTFAGLQAAAGFLQREVSRALR-LRNTPHLRFVYDESVARGDRIERLLREARTQ 116
>gi|229592635|ref|YP_002874754.1| ribosome-binding factor A [Pseudomonas fluorescens SBW25]
gi|259552059|sp|C3K258|RBFA_PSEFS RecName: Full=Ribosome-binding factor A
gi|229364501|emb|CAY52349.1| ribosome-binding factor A [Pseudomonas fluorescens SBW25]
Length = 131
Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats.
Identities = 33/126 (26%), Positives = 64/126 (50%), Gaps = 8/126 (6%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K R R+G++++ L +I E +D + +++I+ V +S D+ A ++I++
Sbjct: 2 AKEYSRTQRIGDQMQRELAQLI-RREVKDPRVG--LVTITAVEVSRDVGHAKIFITVMGQ 58
Query: 66 VSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
S + + I LN F+R ++ R ++ LR VP+L F YD S+ L+AL+ +
Sbjct: 59 DSAEEIAQSIKVLNAAAGFLRMQLAREMK-LRSVPQLHFHYDESVVRGAHLSALIER-AV 116
Query: 123 PVALEK 128
+
Sbjct: 117 AEDSQH 122
>gi|315126159|ref|YP_004068162.1| ribosome-binding factor A, role in processing of 16S rRNA
[Pseudoalteromonas sp. SM9913]
gi|315014673|gb|ADT68011.1| ribosome-binding factor A, role in processing of 16S rRNA
[Pseudoalteromonas sp. SM9913]
Length = 135
Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats.
Identities = 31/116 (26%), Positives = 58/116 (50%), Gaps = 7/116 (6%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
+ R RV ++++ + VIL E +D + ++++S V +S DL A V+I++
Sbjct: 2 REFSRTDRVAQQIQKEIA-VILQREIKDPRLG--MVTVSAVEVSRDLSYAKVFITVFNTE 58
Query: 67 SP---DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ LN +IR +G+ +R R +PEL+F D SL +++ L+
Sbjct: 59 DENAAKQSAKVLNEATGYIRSLLGKRIRA-RIMPELKFVVDNSLMEGMRISNLVDS 113
>gi|302389794|ref|YP_003825615.1| ribosome-binding factor A [Thermosediminibacter oceani DSM 16646]
gi|302200422|gb|ADL07992.1| ribosome-binding factor A [Thermosediminibacter oceani DSM 16646]
Length = 119
Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats.
Identities = 31/114 (27%), Positives = 61/114 (53%), Gaps = 4/114 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
R RV E++ A+ +I NN+ +D I +IS+++V +S DLR A +++S+ +
Sbjct: 1 MEFSRTDRVSGEIKKAVSEII-NNDLKDPRIQG-LISVTKVEVSKDLRHAKIFLSIYGEE 58
Query: 67 S-PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
S + + FIR + +R L+++P+L F+ D S++ ++ L+
Sbjct: 59 SVKQNALEGIKNAEGFIRRELANRIR-LKFIPQLNFKLDDSIEYGIHISKLLKD 111
>gi|330807484|ref|YP_004351946.1| ribosome-binding factor A; RBFA, ribosome-binding factor A
superfamily [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|327375592|gb|AEA66942.1| ribosome-binding factor A; RBFA, Ribosome-binding factor A
superfamily [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
Length = 133
Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats.
Identities = 33/126 (26%), Positives = 64/126 (50%), Gaps = 8/126 (6%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K R R+G++++ L +I E +D + +++I+ V +S D+ A ++I++
Sbjct: 2 AKEYSRTQRIGDQMQRELAQLI-RREVKDPRVG--LVTITAVEVSRDVGHAKIFITVMGQ 58
Query: 66 VSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
S + + I LN F+R ++ R ++ LR VP+L F YD S+ L+AL+ +
Sbjct: 59 DSAEEIAQSIKVLNSAAGFLRMQLAREMK-LRSVPQLHFHYDESVVRGAHLSALIER-AV 116
Query: 123 PVALEK 128
+
Sbjct: 117 AEDSQH 122
>gi|330877232|gb|EGH11381.1| ribosome-binding factor A [Pseudomonas syringae pv. morsprunorum
str. M302280PT]
Length = 138
Score = 124 bits (313), Expect = 3e-27, Method: Composition-based stats.
Identities = 31/126 (24%), Positives = 64/126 (50%), Gaps = 8/126 (6%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K R R+G++++ L +I E +D + +++I+ V +S D+ A +++++
Sbjct: 2 AKEYSRTQRIGDQMQRELAQLI-RREIKDPRVG--LVTITAVDVSRDVGHAKIFMTVMGQ 58
Query: 66 VSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
+ + + I LN F+R ++ R ++ LR VP+L F YD S+ L+AL+ +
Sbjct: 59 DNAEDIAQTIKVLNSAAGFLRMQLAREMK-LRSVPQLHFHYDESVVRGAHLSALIER-AV 116
Query: 123 PVALEK 128
+
Sbjct: 117 AQDSQH 122
>gi|78222797|ref|YP_384544.1| ribosome-binding factor A [Geobacter metallireducens GS-15]
gi|123571972|sp|Q39VA5|RBFA_GEOMG RecName: Full=Ribosome-binding factor A
gi|78194052|gb|ABB31819.1| ribosome-binding factor A [Geobacter metallireducens GS-15]
Length = 118
Score = 124 bits (313), Expect = 3e-27, Method: Composition-based stats.
Identities = 31/110 (28%), Positives = 62/110 (56%), Gaps = 5/110 (4%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVS 67
+R+ +V E + + +++ +D I ++I+ V +S D+R AT+Y + + D +
Sbjct: 2 YKRSDKVAEAIHELVSGLLVKG-LKDPRIG--FVTITGVKVSDDIRHATIYYTVMGSDEA 58
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ LN ++ FIR + + LR LR+ PEL F+YD S++ +++ L+
Sbjct: 59 KKSTLHGLNSSVGFIRKEVSKELR-LRFAPELIFKYDESIEYGNRIDQLL 107
>gi|297184032|gb|ADI20152.1| ribosome-binding factor a [uncultured alpha proteobacterium
EB080_L06A09]
Length = 135
Score = 124 bits (313), Expect = 4e-27, Method: Composition-based stats.
Identities = 36/120 (30%), Positives = 63/120 (52%), Gaps = 1/120 (0%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
S+R LRVGE +R A+ V+L + D ++ I++ EV + DL++A VY+
Sbjct: 11 GPSQRQLRVGEMLRRAVSDVLLRGDIHDTDLAHVSITVGEVRSTPDLKLALVYVLPLGGQ 70
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVAL 126
+ + VI+ALN N IR + + L +L+Y P+L+F D + + L+ + +
Sbjct: 71 NAEIVINALNKNKYEIRRSVNK-LVSLKYSPDLKFVLDRTFDQLDETRRLLEQDVVKRDV 129
>gi|302185433|ref|ZP_07262106.1| ribosome-binding factor A [Pseudomonas syringae pv. syringae 642]
Length = 138
Score = 124 bits (313), Expect = 4e-27, Method: Composition-based stats.
Identities = 32/126 (25%), Positives = 64/126 (50%), Gaps = 8/126 (6%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K R R+G++++ L +I E +D + +++I+ V +S D+ A +++++
Sbjct: 2 AKEYSRTQRIGDQMQRELAQLI-RREIKDPRVG--LVTITAVDVSRDVGHAKIFMTVMGQ 58
Query: 66 VSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
S + + I LN F+R ++ R ++ LR VP+L F YD S+ L+AL+ +
Sbjct: 59 DSAEEIAQTIKVLNSAAGFLRMQLAREMK-LRSVPQLHFHYDESVVRGAHLSALIER-AV 116
Query: 123 PVALEK 128
+
Sbjct: 117 AEDGQH 122
>gi|34496918|ref|NP_901133.1| ribosome-binding factor A [Chromobacterium violaceum ATCC 12472]
gi|39931751|sp|Q7NY12|RBFA_CHRVO RecName: Full=Ribosome-binding factor A
gi|34330314|gb|AAQ59138.2| ribosome-binding factor A [Chromobacterium violaceum ATCC 12472]
Length = 138
Score = 124 bits (313), Expect = 4e-27, Method: Composition-based stats.
Identities = 31/125 (24%), Positives = 61/125 (48%), Gaps = 5/125 (4%)
Query: 4 KNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP 63
K K R+ RV E+++ L + +D I+I+ V ++ D A VY ++
Sbjct: 3 KAKKGFSRSDRVAEQIQRELAE-LTRKGLKDPR--AGWITITAVEVTRDYSHAKVYYTVM 59
Query: 64 LDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIP 123
+D + + AL+ + ++R +GR+++ + +P+L F YD S++ L +L+
Sbjct: 60 VDSTREATQEALDSSAGYLRNELGRAIK-MFSMPQLHFVYDDSVERGMHLTSLINQVA-R 117
Query: 124 VALEK 128
EK
Sbjct: 118 EDAEK 122
>gi|197334491|ref|YP_002155242.1| ribosome-binding factor A [Vibrio fischeri MJ11]
gi|226723615|sp|B5FA80|RBFA_VIBFM RecName: Full=Ribosome-binding factor A
gi|197315981|gb|ACH65428.1| ribosome-binding factor A [Vibrio fischeri MJ11]
Length = 135
Score = 124 bits (313), Expect = 4e-27, Method: Composition-based stats.
Identities = 35/116 (30%), Positives = 64/116 (55%), Gaps = 6/116 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP-- 63
K R RV ++++ L V+L E +D I +++IS+V +S DL A V+++
Sbjct: 2 SKEFSRTQRVSQQLQKELA-VMLQREVRDSRIG--MVTISDVEVSRDLAYAKVFVTFFCV 58
Query: 64 LDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
D +P+ ++AL + +R +G+ +R LR PE+RF YD +L +++ L+
Sbjct: 59 GDQTPESSLAALKEHEPSLRMMLGKRIR-LRLTPEIRFTYDNTLVEGMRMSNLVTD 113
>gi|89101191|ref|ZP_01174022.1| ribosome-binding factor A [Bacillus sp. NRRL B-14911]
gi|89084100|gb|EAR63270.1| ribosome-binding factor A [Bacillus sp. NRRL B-14911]
Length = 112
Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats.
Identities = 29/101 (28%), Positives = 54/101 (53%), Gaps = 5/101 (4%)
Query: 19 VRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP-DRVISALNC 77
++ L +I + +D I +++++V ++ DL+ ATVYIS+ D + + L
Sbjct: 1 MKKELGEIIGR-KIKDPRIG--FVTVTDVAVTGDLQQATVYISVLGDEEKRENTLKGLAK 57
Query: 78 NIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
FIR IG+ +R LR PE+ F +D S+ +++ L+
Sbjct: 58 AKGFIRSEIGQRIR-LRKTPEIIFEFDESIDYGNRIDTLLH 97
>gi|66047406|ref|YP_237247.1| ribosome-binding factor A [Pseudomonas syringae pv. syringae B728a]
gi|75500704|sp|Q4ZNR3|RBFA_PSEU2 RecName: Full=Ribosome-binding factor A
gi|63258113|gb|AAY39209.1| Ribosome-binding factor A [Pseudomonas syringae pv. syringae B728a]
Length = 138
Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats.
Identities = 32/126 (25%), Positives = 64/126 (50%), Gaps = 8/126 (6%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K R R+G++++ L +I E +D + +++I+ V +S D+ A +++++
Sbjct: 2 AKEYSRTQRIGDQMQRELAQLI-RREIKDPRVG--LVTITAVDVSRDVGHAKIFMTVMGQ 58
Query: 66 VSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
S + + I LN F+R ++ R ++ LR VP+L F YD S+ L+AL+ +
Sbjct: 59 DSAEEIAQTIKVLNSAAGFLRMQLAREMK-LRSVPQLHFHYDESVVRGAHLSALIER-AV 116
Query: 123 PVALEK 128
+
Sbjct: 117 AEDGQH 122
>gi|258620314|ref|ZP_05715352.1| ribosome-binding factor A [Vibrio mimicus VM573]
gi|262172280|ref|ZP_06039958.1| ribosome-binding factor A [Vibrio mimicus MB-451]
gi|258587193|gb|EEW11904.1| ribosome-binding factor A [Vibrio mimicus VM573]
gi|261893356|gb|EEY39342.1| ribosome-binding factor A [Vibrio mimicus MB-451]
Length = 132
Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats.
Identities = 35/115 (30%), Positives = 65/115 (56%), Gaps = 6/115 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP-- 63
PK R RV ++++ L +IL E +D + +++IS+V +S DL A V+++
Sbjct: 2 PKEFSRTQRVAQQLQKELA-MILQREVRDSRLG--MVTISDVEVSRDLAYAKVFVTFLCV 58
Query: 64 LDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ +P+ ++AL + IR +G+ +R LR PE+RF YD +L +++ L+
Sbjct: 59 GEQTPESCLAALREHEVHIRMMLGKQIR-LRLTPEIRFYYDNTLVEGMRMSNLVT 112
>gi|169831090|ref|YP_001717072.1| ribosome-binding factor A [Candidatus Desulforudis audaxviator
MP104C]
gi|169637934|gb|ACA59440.1| ribosome-binding factor A [Candidatus Desulforudis audaxviator
MP104C]
Length = 119
Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats.
Identities = 27/110 (24%), Positives = 56/110 (50%), Gaps = 6/110 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-DVSPD 69
R R+ E ++ + ++ +D + ++++ V +S DLR A V++S+ + D
Sbjct: 7 RPERLAEVIKKEISDLLRQ--MKDPRLG--FVTVTAVEVSSDLRYAKVFVSVLGSNEDQD 62
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ L FIR +G+ +R LRY PE+ F +D S++ ++ ++
Sbjct: 63 ASLKVLRGAQGFIRTELGKRIR-LRYTPEVSFVHDPSIEEGTRIIQIIRD 111
>gi|28899229|ref|NP_798834.1| ribosome-binding factor A [Vibrio parahaemolyticus RIMD 2210633]
gi|153838296|ref|ZP_01990963.1| ribosome-binding factor A [Vibrio parahaemolyticus AQ3810]
gi|260362208|ref|ZP_05775192.1| ribosome-binding factor A [Vibrio parahaemolyticus K5030]
gi|260879076|ref|ZP_05891431.1| ribosome-binding factor A [Vibrio parahaemolyticus AN-5034]
gi|260897747|ref|ZP_05906243.1| ribosome-binding factor A [Vibrio parahaemolyticus Peru-466]
gi|260900803|ref|ZP_05909198.1| ribosome-binding factor A [Vibrio parahaemolyticus AQ4037]
gi|31076895|sp|Q87M03|RBFA_VIBPA RecName: Full=Ribosome-binding factor A
gi|28807453|dbj|BAC60718.1| ribosome-binding factor A [Vibrio parahaemolyticus RIMD 2210633]
gi|149748285|gb|EDM59144.1| ribosome-binding factor A [Vibrio parahaemolyticus AQ3810]
gi|308088966|gb|EFO38661.1| ribosome-binding factor A [Vibrio parahaemolyticus Peru-466]
gi|308089597|gb|EFO39292.1| ribosome-binding factor A [Vibrio parahaemolyticus AN-5034]
gi|308108183|gb|EFO45723.1| ribosome-binding factor A [Vibrio parahaemolyticus AQ4037]
gi|308111465|gb|EFO49005.1| ribosome-binding factor A [Vibrio parahaemolyticus K5030]
gi|328474235|gb|EGF45040.1| ribosome-binding factor A [Vibrio parahaemolyticus 10329]
Length = 131
Score = 124 bits (312), Expect = 5e-27, Method: Composition-based stats.
Identities = 34/115 (29%), Positives = 64/115 (55%), Gaps = 6/115 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP-- 63
K R RV ++++ L +IL E +D + +++IS+V +S DL A V+++
Sbjct: 2 SKEFSRTQRVAQQLQKELA-MILQREVRDSRLG--MVTISDVEVSRDLAYAKVFVTFLCV 58
Query: 64 LDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ +P+ ++AL + IR +G+ +R LR PE+RF YD +L +++ L+
Sbjct: 59 GEQTPESCLAALREHEVHIRMMLGKRIR-LRLTPEIRFYYDNTLVEGMRMSNLVT 112
>gi|262163942|ref|ZP_06031681.1| ribosome-binding factor A [Vibrio mimicus VM223]
gi|262027470|gb|EEY46136.1| ribosome-binding factor A [Vibrio mimicus VM223]
Length = 132
Score = 124 bits (312), Expect = 5e-27, Method: Composition-based stats.
Identities = 35/115 (30%), Positives = 65/115 (56%), Gaps = 6/115 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP-- 63
PK R RV ++++ L +IL E +D + +++IS+V +S DL A V+++
Sbjct: 2 PKEFSRTQRVAQQLQKELA-MILQREVRDSRLG--MVTISDVEVSRDLAYAKVFVTFLCI 58
Query: 64 LDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ +P+ ++AL + IR +G+ +R LR PE+RF YD +L +++ L+
Sbjct: 59 GEQTPESCLAALREHEVHIRMMLGKQIR-LRLTPEIRFYYDNTLVEGMRMSNLVT 112
>gi|217970110|ref|YP_002355344.1| ribosome-binding factor A [Thauera sp. MZ1T]
gi|217507437|gb|ACK54448.1| ribosome-binding factor A [Thauera sp. MZ1T]
Length = 141
Score = 124 bits (312), Expect = 5e-27, Method: Composition-based stats.
Identities = 31/113 (27%), Positives = 59/113 (52%), Gaps = 5/113 (4%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPL 64
PK R+ RV E++R L +I E +D + I++++V ++ D A V+ + +
Sbjct: 2 PKEYSRSQRVVEQIRRELAELI-RLEVKDPRVG--FITLTDVEITPDYAHAKVFFTNMTG 58
Query: 65 DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ ++ L F+R +GR +R + +PEL F YD S++ +L+ L+
Sbjct: 59 EADVPEILQGLRRASGFLRRELGRRIR-IHTIPELHFHYDRSVEEGSRLSQLI 110
>gi|330950304|gb|EGH50564.1| ribosome-binding factor A [Pseudomonas syringae Cit 7]
Length = 138
Score = 124 bits (312), Expect = 5e-27, Method: Composition-based stats.
Identities = 32/126 (25%), Positives = 64/126 (50%), Gaps = 8/126 (6%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K R R+G++++ L +I E +D + +++I+ V +S D+ A +++++
Sbjct: 2 AKEYSRTQRIGDQMQRELAQLI-RREIKDPRVG--LVTITAVDVSRDVGHAKIFMTVMGQ 58
Query: 66 VSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
S + + I LN F+R ++ R ++ LR VP+L F YD S+ L+AL+ +
Sbjct: 59 DSAEEIAQTIKVLNAAAGFLRMQLAREMK-LRSVPQLHFHYDESVVRGAHLSALIER-AV 116
Query: 123 PVALEK 128
+
Sbjct: 117 AEDGQH 122
>gi|330937948|gb|EGH41735.1| ribosome-binding factor A [Pseudomonas syringae pv. pisi str.
1704B]
Length = 138
Score = 124 bits (312), Expect = 5e-27, Method: Composition-based stats.
Identities = 32/126 (25%), Positives = 64/126 (50%), Gaps = 8/126 (6%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K R R+G++++ L +I E +D + +++I+ V +S D+ A +++++
Sbjct: 2 AKEYSRTQRIGDQMQRELAQLI-RREIKDPRVG--LVTITAVDVSRDVGHAKIFMTVMGQ 58
Query: 66 VSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
S + + I LN F+R ++ R ++ LR VP+L F YD S+ L+AL+ +
Sbjct: 59 DSAEEIAQTIKVLNAAAGFLRMQLAREMK-LRSVPQLHFHYDESVVRGAHLSALIER-AV 116
Query: 123 PVALEK 128
+
Sbjct: 117 AEDGQH 122
>gi|330969653|gb|EGH69719.1| ribosome-binding factor A [Pseudomonas syringae pv. aceris str.
M302273PT]
Length = 138
Score = 123 bits (311), Expect = 5e-27, Method: Composition-based stats.
Identities = 32/126 (25%), Positives = 64/126 (50%), Gaps = 8/126 (6%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K R R+G++++ L +I E +D + +++I+ V +S D+ A +++++
Sbjct: 2 AKEYSRTQRIGDQMQRELAQLI-RREIKDPRVG--LVTITAVDVSRDVGHAKIFMTVMGQ 58
Query: 66 VSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
S + + I LN F+R ++ R ++ LR VP+L F YD S+ L+AL+ +
Sbjct: 59 DSSEEIAQTIKVLNSAAGFLRMQLAREMK-LRSVPQLHFHYDESVVRGAHLSALIER-AV 116
Query: 123 PVALEK 128
+
Sbjct: 117 AEDGQH 122
>gi|77457007|ref|YP_346512.1| ribosome-binding factor A [Pseudomonas fluorescens Pf0-1]
gi|123606004|sp|Q3KI83|RBFA_PSEPF RecName: Full=Ribosome-binding factor A
gi|77381010|gb|ABA72523.1| ribosome-binding factor A [Pseudomonas fluorescens Pf0-1]
Length = 133
Score = 123 bits (311), Expect = 6e-27, Method: Composition-based stats.
Identities = 32/126 (25%), Positives = 64/126 (50%), Gaps = 8/126 (6%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K R R+G++++ L +I E +D + +++I+ V +S D+ A ++I++
Sbjct: 2 AKEYSRTQRIGDQMQRELAQLI-RREVKDPRVG--LVTITAVEVSRDVGHAKIFITVMGQ 58
Query: 66 VSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
+ + + I LN F+R ++ R ++ LR VP+L F YD S+ L+AL+ +
Sbjct: 59 DNAEDIAQSIKVLNAAAGFLRMQLAREMK-LRSVPQLHFHYDESVVRGAHLSALIER-AV 116
Query: 123 PVALEK 128
+
Sbjct: 117 AEDNQH 122
>gi|86157531|ref|YP_464316.1| ribosome-binding factor A [Anaeromyxobacter dehalogenans 2CP-C]
gi|123499936|sp|Q2IPZ5|RBFA_ANADE RecName: Full=Ribosome-binding factor A
gi|85774042|gb|ABC80879.1| ribosome-binding factor A [Anaeromyxobacter dehalogenans 2CP-C]
Length = 138
Score = 123 bits (311), Expect = 6e-27, Method: Composition-based stats.
Identities = 34/114 (29%), Positives = 54/114 (47%), Gaps = 4/114 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS-PD 69
R RV EE R L ++ +D I ++++ MS DL+ ATVY+S+ D
Sbjct: 6 RPARVAEEFRHELSALLARG-LKDPRI-TGFVTVTGSKMSPDLKEATVYVSIHGDERVRK 63
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIP 123
+ L F++ + R+LR LR P LRF YD S+ ++ L+ +
Sbjct: 64 DTFAGLQAAAGFLQREVSRALR-LRNTPHLRFVYDESVARGDRIERLLREARTQ 116
>gi|77919157|ref|YP_356972.1| ribosome-binding factor A [Pelobacter carbinolicus DSM 2380]
gi|123574181|sp|Q3A4A5|RBFA_PELCD RecName: Full=Ribosome-binding factor A
gi|77545240|gb|ABA88802.1| ribosome-binding factor A [Pelobacter carbinolicus DSM 2380]
Length = 119
Score = 123 bits (311), Expect = 6e-27, Method: Composition-based stats.
Identities = 29/110 (26%), Positives = 57/110 (51%), Gaps = 5/110 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP-D 69
R RVGE+++ + ++L +D + ++I+ V ++ D+ +A VY ++ +
Sbjct: 5 RPHRVGEQLQKEISALLLKG-LKDPRVG--FVTITAVSVTPDMHLARVYYTVYGEEEQRK 61
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
L F R +GR LR +RYVP+L F +D +L+ ++ +L+
Sbjct: 62 ETQKGLESATPFFRRELGRRLR-MRYVPDLVFEFDKALEYGNRIESLLRQ 110
>gi|149189793|ref|ZP_01868074.1| ribosome-binding factor A [Vibrio shilonii AK1]
gi|148836442|gb|EDL53398.1| ribosome-binding factor A [Vibrio shilonii AK1]
Length = 138
Score = 123 bits (311), Expect = 6e-27, Method: Composition-based stats.
Identities = 34/115 (29%), Positives = 64/115 (55%), Gaps = 6/115 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP-- 63
K R RV ++++ L +IL E +D + +++IS+V +S DL A V+++
Sbjct: 2 SKEFSRTQRVAQQLQKELA-LILQREVRDSRLG--MVTISDVEVSRDLAYAKVFVTFLCV 58
Query: 64 LDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ +P+ ++AL + IR +G+ +R LR PE+RF YD +L +++ L+
Sbjct: 59 GEQTPESSLAALREHEAHIRMMLGKRIR-LRLTPEVRFHYDNTLVEGMRMSNLVS 112
>gi|261212245|ref|ZP_05926531.1| ribosome-binding factor A [Vibrio sp. RC341]
gi|262401658|ref|ZP_06078224.1| ribosome-binding factor A [Vibrio sp. RC586]
gi|260838853|gb|EEX65504.1| ribosome-binding factor A [Vibrio sp. RC341]
gi|262352075|gb|EEZ01205.1| ribosome-binding factor A [Vibrio sp. RC586]
Length = 132
Score = 123 bits (311), Expect = 6e-27, Method: Composition-based stats.
Identities = 35/115 (30%), Positives = 65/115 (56%), Gaps = 6/115 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP-- 63
PK R RV ++++ L +IL E +D + +++IS+V +S DL A V+++
Sbjct: 2 PKEFSRTQRVAQQLQKELA-MILQREVRDSRLG--MVTISDVEVSRDLAYAKVFVTFLCI 58
Query: 64 LDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ +P+ ++AL + IR +G+ +R LR PE+RF YD +L +++ L+
Sbjct: 59 GEQTPESCLAALREHEVQIRMMLGKQIR-LRLTPEIRFYYDNTLVEGMRMSNLVT 112
>gi|91228268|ref|ZP_01262204.1| ribosome-binding factor A [Vibrio alginolyticus 12G01]
gi|269966861|ref|ZP_06180934.1| ribosome-binding factor A [Vibrio alginolyticus 40B]
gi|91188145|gb|EAS74447.1| ribosome-binding factor A [Vibrio alginolyticus 12G01]
gi|269828528|gb|EEZ82789.1| ribosome-binding factor A [Vibrio alginolyticus 40B]
Length = 131
Score = 123 bits (311), Expect = 6e-27, Method: Composition-based stats.
Identities = 35/125 (28%), Positives = 67/125 (53%), Gaps = 7/125 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP-- 63
K R RV ++++ L +IL E +D + +++IS+V +S DL A V+++
Sbjct: 2 SKEFSRTQRVAQQLQKELA-MILQREVRDSRLG--MVTISDVEVSRDLAYAKVFVTFLCV 58
Query: 64 LDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIP 123
+ +P+ ++AL + IR +G+ +R LR PE+RF YD +L +++ L+ +
Sbjct: 59 GEQTPESCLAALREHEVHIRMMLGKRIR-LRLTPEIRFHYDNTLVEGMRMSNLV-SEVVS 116
Query: 124 VALEK 128
+K
Sbjct: 117 SDKQK 121
>gi|331011500|gb|EGH91556.1| ribosome-binding factor A [Pseudomonas syringae pv. tabaci ATCC
11528]
Length = 138
Score = 123 bits (311), Expect = 6e-27, Method: Composition-based stats.
Identities = 32/126 (25%), Positives = 64/126 (50%), Gaps = 8/126 (6%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K R R+G++++ L +I E +D + +++I+ V +S D+ A +++++
Sbjct: 2 AKKYSRTQRIGDQMQRELAQLI-RREIKDPRVG--LVTITPVDVSRDVGHAKIFMTVMGQ 58
Query: 66 VSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
S + + I LN F+R ++ R ++ LR VP+L F YD S+ L+AL+ +
Sbjct: 59 DSAEEIAQTIKVLNSAAGFLRMQLAREMK-LRSVPQLHFHYDESVVRGAHLSALIER-AV 116
Query: 123 PVALEK 128
+
Sbjct: 117 AQDGQH 122
>gi|167035702|ref|YP_001670933.1| ribosome-binding factor A [Pseudomonas putida GB-1]
gi|189039552|sp|B0KHX7|RBFA_PSEPG RecName: Full=Ribosome-binding factor A
gi|166862190|gb|ABZ00598.1| ribosome-binding factor A [Pseudomonas putida GB-1]
Length = 132
Score = 123 bits (311), Expect = 7e-27, Method: Composition-based stats.
Identities = 38/117 (32%), Positives = 65/117 (55%), Gaps = 7/117 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K R R+G++++ L +I E +D + +++I+ V +S DL A V+I++ +
Sbjct: 2 AKEYSRTQRIGDQMQRELAELI-RREVKDPRVG--LVTITAVDVSRDLGHAKVFITVMGE 58
Query: 66 VSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+PD V + ALN F+R +GRS+ LR VP+L F +D S+ L+AL+
Sbjct: 59 ETPDAVQQSLKALNSAASFLRLHLGRSM-QLRSVPQLHFHFDESVSRGVHLSALIER 114
>gi|161582021|ref|NP_230293.2| ribosome-binding factor A [Vibrio cholerae O1 biovar El Tor str.
N16961]
gi|255744139|ref|ZP_05418092.1| ribosome-binding factor A [Vibrio cholera CIRS 101]
gi|258624685|ref|ZP_05719619.1| ribosome-binding factor A [Vibrio mimicus VM603]
gi|262156115|ref|ZP_06029234.1| ribosome-binding factor A [Vibrio cholerae INDRE 91/1]
gi|262169943|ref|ZP_06037633.1| ribosome-binding factor A [Vibrio cholerae RC27]
gi|262189598|ref|ZP_06047996.1| ribosome-binding factor A [Vibrio cholerae CT 5369-93]
gi|20978661|sp|Q9KU79|RBFA_VIBCH RecName: Full=Ribosome-binding factor A
gi|172047750|sp|A5F927|RBFA_VIBC3 RecName: Full=Ribosome-binding factor A
gi|255738079|gb|EET93471.1| ribosome-binding factor A [Vibrio cholera CIRS 101]
gi|258582972|gb|EEW07787.1| ribosome-binding factor A [Vibrio mimicus VM603]
gi|262021677|gb|EEY40388.1| ribosome-binding factor A [Vibrio cholerae RC27]
gi|262030151|gb|EEY48796.1| ribosome-binding factor A [Vibrio cholerae INDRE 91/1]
gi|262034521|gb|EEY52863.1| ribosome-binding factor A [Vibrio cholerae CT 5369-93]
gi|327483445|gb|AEA77852.1| Ribosome-binding factor A [Vibrio cholerae LMA3894-4]
Length = 132
Score = 123 bits (311), Expect = 7e-27, Method: Composition-based stats.
Identities = 35/115 (30%), Positives = 65/115 (56%), Gaps = 6/115 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP-- 63
PK R RV ++++ L +IL E +D + +++IS+V +S DL A V+++
Sbjct: 2 PKEFSRTQRVAQQLQKELA-MILQREVRDSRLG--MVTISDVEVSRDLAYAKVFVTFLCI 58
Query: 64 LDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ +P+ ++AL + IR +G+ +R LR PE+RF YD +L +++ L+
Sbjct: 59 GEQTPESCLAALREHEVQIRMMLGKQIR-LRLTPEIRFYYDNTLVEGMRMSNLVT 112
>gi|114769583|ref|ZP_01447193.1| ribosome-binding factor A [alpha proteobacterium HTCC2255]
gi|114549288|gb|EAU52170.1| ribosome-binding factor A [alpha proteobacterium HTCC2255]
gi|297184255|gb|ADI20373.1| ribosome-binding factor a [uncultured alpha proteobacterium
EB080_L27A02]
Length = 135
Score = 123 bits (311), Expect = 7e-27, Method: Composition-based stats.
Identities = 36/121 (29%), Positives = 63/121 (52%), Gaps = 1/121 (0%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
S+R LRVGE +R A+ V+L + D ++ +++ EV + DL++A VY+
Sbjct: 11 GPSQRQLRVGEMLRRAVSDVLLRGDIHDADLAHVSVTVGEVRSTPDLKLAIVYVLPLGGE 70
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVAL 126
+ + VI ALN N IR + + L +L+Y P+L+F D + + L+ + +
Sbjct: 71 NANIVIDALNRNKYEIRRSVNK-LVSLKYSPDLKFVLDRTFDQLDETRRLLDQEIVKKDV 129
Query: 127 E 127
E
Sbjct: 130 E 130
>gi|3914553|sp|O34272|RBFA_YEREN RecName: Full=Ribosome-binding factor A
gi|2462713|emb|CAA71698.1| yhbB [Yersinia enterocolitica]
Length = 133
Score = 123 bits (310), Expect = 7e-27, Method: Composition-based stats.
Identities = 35/128 (27%), Positives = 63/128 (49%), Gaps = 12/128 (9%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL--- 64
R+ RV +E++ + +IL E +D + + ++S + +S DL A V+++
Sbjct: 1 EFSRSQRVSQEMQKEIA-LILQREIKDPRVG--MATVSGIELSRDLAYAKVFVTFLNVLT 57
Query: 65 ----DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
+ I AL +IR +G+++R LR VPEL F YD SL +++ L+
Sbjct: 58 DNADPDTAKNGIKALQDASGYIRTLLGKAMR-LRIVPELTFAYDNSLIEGMRMSNLVTN- 115
Query: 121 KIPVALEK 128
I +E+
Sbjct: 116 VIKNDVER 123
>gi|163752372|ref|ZP_02159567.1| ribosome-binding factor A [Shewanella benthica KT99]
gi|161327744|gb|EDP98931.1| ribosome-binding factor A [Shewanella benthica KT99]
Length = 140
Score = 123 bits (310), Expect = 8e-27, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 61/116 (52%), Gaps = 6/116 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K R R+G++++ L V+ + +D + ++++++V +S DL A V+++ +
Sbjct: 2 AKEFSRTRRIGQQLQQELAQVLHR-DIKDPRVG--MVTVNDVEVSRDLSYAKVFVTFFEE 58
Query: 66 VSP--DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ + AL+ +IR + ++ LR +PELRF YD SL +++ L+
Sbjct: 59 DEKIVAQKLEALSSAAGYIRSLVAGRMK-LRVMPELRFIYDASLVEGMRMSNLVTR 113
>gi|262393383|ref|YP_003285237.1| ribosome-binding factor A [Vibrio sp. Ex25]
gi|262336977|gb|ACY50772.1| ribosome-binding factor A [Vibrio sp. Ex25]
Length = 131
Score = 123 bits (310), Expect = 8e-27, Method: Composition-based stats.
Identities = 34/115 (29%), Positives = 64/115 (55%), Gaps = 6/115 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP-- 63
K R RV ++++ L +IL E +D + +++IS+V +S DL A V+++
Sbjct: 2 SKEFSRTQRVAQQLQKELA-MILQREVRDSRLG--MVTISDVEVSRDLAYAKVFVTFLCV 58
Query: 64 LDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ +P+ ++AL + IR +G+ +R LR PE+RF YD +L +++ L+
Sbjct: 59 GEQTPESCLAALREHEVHIRMMLGKRIR-LRLTPEIRFHYDNTLVEGMRMSNLVS 112
>gi|222151110|ref|YP_002560264.1| ribosome-binding factor A [Macrococcus caseolyticus JCSC5402]
gi|254789755|sp|B9EBF7|RBFA_MACCJ RecName: Full=Ribosome-binding factor A
gi|222120233|dbj|BAH17568.1| ribosome-binding factor A [Macrococcus caseolyticus JCSC5402]
Length = 114
Score = 123 bits (310), Expect = 8e-27, Method: Composition-based stats.
Identities = 28/111 (25%), Positives = 63/111 (56%), Gaps = 5/111 (4%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV-S 67
S R+ RVGE+++ + +I + ++ + ++++EV ++ DL +A+VY+++ +
Sbjct: 2 SLRSERVGEQLKKEISEIINQ-KLKNPNVG--FVTVTEVEVTGDLSLASVYVTVLGEEKE 58
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ + L + FI+ I + +LR VP+L+F+YD S+ K+ ++
Sbjct: 59 RKKSLEGLEKSKGFIKSEIAHRM-DLRIVPDLKFKYDESIDYGNKIERMIA 108
>gi|227486450|ref|ZP_03916766.1| ribosome-binding factor A [Anaerococcus lactolyticus ATCC 51172]
gi|227235631|gb|EEI85646.1| ribosome-binding factor A [Anaerococcus lactolyticus ATCC 51172]
Length = 127
Score = 123 bits (310), Expect = 8e-27, Method: Composition-based stats.
Identities = 35/113 (30%), Positives = 65/113 (57%), Gaps = 2/113 (1%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
N +R R+ EV+ + +I+++ RL + ++S+++V ++ DL A +YIS+ D
Sbjct: 1 MNKKRTARISSEVKREISKIIMDDLNDPRLSAEAMVSVTDVEVTNDLSYADIYISVLGDN 60
Query: 67 S-PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
D V+ ALN +I+ IG +R LR +PE RF++D S++ ++ L+
Sbjct: 61 KTKDGVMEALNQAKGYIKILIGERMR-LRSMPEFRFKFDNSIEHGAYMDKLIA 112
>gi|237808989|ref|YP_002893429.1| ribosome-binding factor A [Tolumonas auensis DSM 9187]
gi|259552120|sp|C4L8X3|RBFA_TOLAT RecName: Full=Ribosome-binding factor A
gi|237501250|gb|ACQ93843.1| ribosome-binding factor A [Tolumonas auensis DSM 9187]
Length = 134
Score = 123 bits (310), Expect = 8e-27, Method: Composition-based stats.
Identities = 32/116 (27%), Positives = 66/116 (56%), Gaps = 6/116 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K RA RV ++++ + VIL E +D + ++++S+V ++ DL+ A ++++ L+
Sbjct: 2 AKEFGRADRVAQQIQREIA-VILQREVKDPRVG--MVTVSDVELTRDLQHAKIFVTFFLN 58
Query: 66 V--SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ + LN +IR +G++++ LR VPE+RF YD +L +++ L+
Sbjct: 59 EVDDIEAGVKVLNDASGYIRILMGKAMK-LRVVPEIRFVYDKTLVEGMRISNLVTN 113
>gi|330830887|ref|YP_004393839.1| ribosome-binding factor A [Aeromonas veronii B565]
gi|328806023|gb|AEB51222.1| Ribosome-binding factor A [Aeromonas veronii B565]
Length = 145
Score = 123 bits (310), Expect = 8e-27, Method: Composition-based stats.
Identities = 36/118 (30%), Positives = 65/118 (55%), Gaps = 8/118 (6%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP-L 64
+ R RVG++++ + +IL E +D I ++++S+V +S DL A +Y++ L
Sbjct: 2 AREFSRTRRVGQQIQREIA-LILQREVKDPRIG--MVTVSDVEVSRDLNYAKIYVTFLQL 58
Query: 65 DVSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ +R+ + L +IR +G ++R LR VPELRF YD +L +L+ L+
Sbjct: 59 ENDAERIKEGLQGLTEAAGYIRSLLGSAMR-LRVVPELRFYYDQTLVEGMRLSNLVTN 115
>gi|330981091|gb|EGH79194.1| ribosome-binding factor A [Pseudomonas syringae pv. aptata str. DSM
50252]
Length = 138
Score = 123 bits (310), Expect = 8e-27, Method: Composition-based stats.
Identities = 32/126 (25%), Positives = 64/126 (50%), Gaps = 8/126 (6%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K R R+G++++ L +I E +D + +++I+ V +S D+ A +++++
Sbjct: 2 AKKYSRTQRIGDQMQRELAQLI-RREIKDPRVG--LVTITAVDVSRDVGHAKIFMTVMGQ 58
Query: 66 VSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
S + + I LN F+R ++ R ++ LR VP+L F YD S+ L+AL+ +
Sbjct: 59 DSAEEIAQTIKVLNAAAGFLRMQLAREMK-LRSVPQLHFHYDESVVRGAHLSALIER-AV 116
Query: 123 PVALEK 128
+
Sbjct: 117 AEDGQH 122
>gi|188026375|ref|ZP_02961860.2| hypothetical protein PROSTU_03932 [Providencia stuartii ATCC 25827]
gi|188020158|gb|EDU58198.1| hypothetical protein PROSTU_03932 [Providencia stuartii ATCC 25827]
Length = 142
Score = 123 bits (310), Expect = 9e-27, Method: Composition-based stats.
Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 11/121 (9%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
+ R+ RV +E++ + +IL E +D I + ++S V +S DL V+++
Sbjct: 8 AREFSRSQRVAQEMQKEIA-IILQREVKDPRIG--MATVSGVELSRDLAYGKVFVTFLNI 64
Query: 66 VSPD-------RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ I ALN FIR +G+++R LR +PEL F YD+SL +++ L+
Sbjct: 65 SHEEHESQMVQDGIKALNEASGFIRSLLGKAMR-LRVIPELTFSYDSSLVDGMRMSNLVS 123
Query: 119 L 119
Sbjct: 124 N 124
>gi|59711094|ref|YP_203870.1| ribosome-binding factor A [Vibrio fischeri ES114]
gi|71648821|sp|Q5E7L4|RBFA_VIBF1 RecName: Full=Ribosome-binding factor A
gi|59479195|gb|AAW84982.1| 30s ribosome binding factor [Vibrio fischeri ES114]
Length = 135
Score = 123 bits (310), Expect = 9e-27, Method: Composition-based stats.
Identities = 34/116 (29%), Positives = 64/116 (55%), Gaps = 6/116 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP-- 63
K R RV ++++ L V+L E +D I +++IS+V +S DL A V+++
Sbjct: 2 SKEFSRTQRVSQQLQKELA-VMLQREVRDSRIG--MVTISDVEVSRDLAYAKVFVTFFCV 58
Query: 64 LDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ +P+ ++AL + +R +G+ +R LR PE+RF YD +L +++ L+
Sbjct: 59 GEQTPESSLAALKEHEPSLRMMLGKRIR-LRLTPEIRFTYDNTLVEGMRMSNLVTD 113
>gi|293526627|ref|ZP_06671312.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
M1015]
gi|290920699|gb|EFD97762.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
M1015]
Length = 130
Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats.
Identities = 36/121 (29%), Positives = 65/121 (53%), Gaps = 5/121 (4%)
Query: 2 KNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS 61
K +S RA RVGE+++ LM +I NN+ +D + I+I++V ++ DL V+++
Sbjct: 10 KEVTRMSSMRAERVGEQMKKELMDII-NNKVKDPRVG--FITITDVVLTNDLSQVKVFLT 66
Query: 62 LPL-DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
+ D + AL+ FI+ +G +R LR +PEL + YD S++ K+ ++
Sbjct: 67 VLGNDKEVENTFKALDKAKGFIKSELGSRMR-LRIMPELMYEYDQSIEYGNKIERMIQDL 125
Query: 121 K 121
Sbjct: 126 H 126
>gi|325276166|ref|ZP_08141971.1| ribosome-binding factor A [Pseudomonas sp. TJI-51]
gi|324098703|gb|EGB96744.1| ribosome-binding factor A [Pseudomonas sp. TJI-51]
Length = 132
Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats.
Identities = 38/117 (32%), Positives = 65/117 (55%), Gaps = 7/117 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K R R+G++++ L +I E +D + +++I+ V +S DL A V+I++ +
Sbjct: 2 AKEYSRTQRIGDQMQRELAELI-RREVKDPRVG--LVTITAVDVSRDLGHAKVFITVMGE 58
Query: 66 VSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+PD V + ALN F+R +GRS+ LR VP+L F +D S+ L+AL+
Sbjct: 59 ETPDAVQQSLKALNSAASFLRLHLGRSM-QLRSVPQLHFHFDESVSRGVHLSALIER 114
>gi|158336219|ref|YP_001517393.1| ribosome-binding factor A [Acaryochloris marina MBIC11017]
gi|189039525|sp|B0CDK8|RBFA_ACAM1 RecName: Full=Ribosome-binding factor A
gi|158306460|gb|ABW28077.1| ribosome-binding factor A [Acaryochloris marina MBIC11017]
Length = 138
Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats.
Identities = 27/112 (24%), Positives = 59/112 (52%), Gaps = 3/112 (2%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-DV 66
RR RV E ++ + ++L + +D + +IS++ V +S DL+ A +++S+ D
Sbjct: 3 TGRRVSRVAELIKREVSQMLL-HSIKDDRVGSGMISVTAVDLSGDLQHAKIFVSIYGTDE 61
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ ++ L ++R ++G + +LR PE+ F D S + ++ +L+
Sbjct: 62 ARAETMAGLESATGYVRKQLGHRI-HLRRTPEVIFCEDRSFEEGNQVLSLLH 112
>gi|331002479|ref|ZP_08325997.1| ribosome-binding factor A [Lachnospiraceae oral taxon 107 str.
F0167]
gi|330410295|gb|EGG89729.1| ribosome-binding factor A [Lachnospiraceae oral taxon 107 str.
F0167]
Length = 123
Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats.
Identities = 35/112 (31%), Positives = 62/112 (55%), Gaps = 4/112 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
KNS ++ + EV A+ I+ E +D ++ + S+++ ++ DL+ AT+Y+S+ D
Sbjct: 3 KNSLKSTMINSEVMKAVSE-IMRGEVKDPRVAP-MTSVTDAEVTTDLKYATIYVSVLGDD 60
Query: 67 SP-DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ ++ L + FIR + R L NLR PEL+F D SL K++ L+
Sbjct: 61 EQSKKTLAGLKSSSGFIRKELARRL-NLRNTPELKFVLDESLAYGMKMDKLI 111
>gi|300854502|ref|YP_003779486.1| ribosome-binding factor A [Clostridium ljungdahlii DSM 13528]
gi|300434617|gb|ADK14384.1| ribosome-binding factor A [Clostridium ljungdahlii DSM 13528]
Length = 121
Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats.
Identities = 25/112 (22%), Positives = 59/112 (52%), Gaps = 4/112 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS-PD 69
R+ R+ EE++ + +I ++ +D + ++S+++V ++ D + A VY+S+ + +
Sbjct: 5 RSGRINEEMKKEISNII-RSDIKDPRV-TAMVSVTKVDVTKDQKYAKVYVSVYGEGKSKE 62
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
AL + FIR +G ++ LR PE+ D +++ ++ ++ K
Sbjct: 63 DTFEALRNSAGFIRREVGHRVK-LRNTPEIIIEQDNTIEYGMHIDKILQEIK 113
>gi|170719908|ref|YP_001747596.1| ribosome-binding factor A [Pseudomonas putida W619]
gi|229568642|sp|B1J2B0|RBFA_PSEPW RecName: Full=Ribosome-binding factor A
gi|169757911|gb|ACA71227.1| ribosome-binding factor A [Pseudomonas putida W619]
Length = 132
Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats.
Identities = 38/117 (32%), Positives = 65/117 (55%), Gaps = 7/117 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K R R+G++++ L +I E +D + +++I+ V +S DL A V+I++ +
Sbjct: 2 AKEYSRTQRIGDQMQRELAELI-RREVKDPRVG--LVTITAVDVSRDLGHAKVFITVMGE 58
Query: 66 VSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+PD V + ALN F+R +GRS+ LR VP+L F +D S+ L+AL+
Sbjct: 59 ETPDAVQQSLKALNSAASFLRLHLGRSM-QLRSVPQLHFHFDESVSRGVHLSALIER 114
>gi|26991394|ref|NP_746819.1| ribosome-binding factor A [Pseudomonas putida KT2440]
gi|148549778|ref|YP_001269880.1| ribosome-binding factor A [Pseudomonas putida F1]
gi|32171601|sp|Q88DV8|RBFA_PSEPK RecName: Full=Ribosome-binding factor A
gi|166219394|sp|A5W986|RBFA_PSEP1 RecName: Full=Ribosome-binding factor A
gi|24986463|gb|AAN70283.1|AE016669_1 ribosome-binding factor A [Pseudomonas putida KT2440]
gi|148513836|gb|ABQ80696.1| ribosome-binding factor A [Pseudomonas putida F1]
gi|313500619|gb|ADR61985.1| RbfA [Pseudomonas putida BIRD-1]
Length = 132
Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats.
Identities = 38/117 (32%), Positives = 65/117 (55%), Gaps = 7/117 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K R R+G++++ L +I E +D + +++I+ V +S DL A V+I++ +
Sbjct: 2 AKEYSRTQRIGDQMQRELAELI-RREVKDPRVG--LVTITAVDVSRDLGHAKVFITVMGE 58
Query: 66 VSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+PD V + ALN F+R +GRS+ LR VP+L F +D S+ L+AL+
Sbjct: 59 ETPDAVQQSLKALNSAASFLRLHLGRSM-QLRSVPQLHFHFDESVSRGVHLSALIER 114
>gi|254490537|ref|ZP_05103723.1| ribosome-binding factor A [Methylophaga thiooxidans DMS010]
gi|224464281|gb|EEF80544.1| ribosome-binding factor A [Methylophaga thiooxydans DMS010]
Length = 124
Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats.
Identities = 32/126 (25%), Positives = 60/126 (47%), Gaps = 8/126 (6%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
+ R R GE V L ++L E D I ++++S V ++ DL+ A VY++
Sbjct: 2 AREYSRTNRFGEVVMRELA-LMLQREISDPRIG--MVTVSHVDVTADLKYAKVYVTRFNG 58
Query: 66 ----VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+ LN ++R + ++ LR +PEL+F YD SL++ ++++ L+
Sbjct: 59 FESEQDVQECLQGLNSASGYLRRGLAGRVK-LRSIPELQFVYDKSLENGFRMDELIAKAN 117
Query: 122 IPVALE 127
P +
Sbjct: 118 KPRQED 123
>gi|254507466|ref|ZP_05119600.1| ribosome-binding factor A [Vibrio parahaemolyticus 16]
gi|219549536|gb|EED26527.1| ribosome-binding factor A [Vibrio parahaemolyticus 16]
Length = 135
Score = 122 bits (308), Expect = 1e-26, Method: Composition-based stats.
Identities = 34/115 (29%), Positives = 63/115 (54%), Gaps = 6/115 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP-- 63
K R RV ++++ L +IL E +D + +++IS+V +S DL A V+++
Sbjct: 2 SKEFSRTQRVAQQLQKELA-MILQREVRDSRLG--MVTISDVEVSRDLAYAKVFVTFLCV 58
Query: 64 LDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ +P+ + AL + IR +G+ +R LR PE+RF YD +L +++ L+
Sbjct: 59 GEQTPESCLEALREHEVHIRMMLGKRIR-LRLTPEVRFHYDNTLVEGMRMSNLVS 112
>gi|294142059|ref|YP_003558037.1| ribosome-binding factor A [Shewanella violacea DSS12]
gi|293328528|dbj|BAJ03259.1| ribosome-binding factor A [Shewanella violacea DSS12]
Length = 140
Score = 122 bits (308), Expect = 1e-26, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 60/116 (51%), Gaps = 6/116 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K R R+G++++ L V+ + +D + ++++++V +S DL A V+++ +
Sbjct: 2 AKEFSRTRRIGQQLQQELAQVLHR-DIKDPRVG--MVTVNDVEVSRDLSYAKVFVTFFEE 58
Query: 66 VSP--DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ AL+ +IR + ++ LR +PELRF YD SL +++ L+
Sbjct: 59 DEKIVAVKLEALSSAAGYIRSLVAGRMK-LRVMPELRFIYDASLVEGMRMSNLVTR 113
>gi|300865260|ref|ZP_07110074.1| Ribosome-binding factor A [Oscillatoria sp. PCC 6506]
gi|300336733|emb|CBN55224.1| Ribosome-binding factor A [Oscillatoria sp. PCC 6506]
Length = 140
Score = 122 bits (308), Expect = 1e-26, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 58/112 (51%), Gaps = 3/112 (2%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-DV 66
SRR RV ++ + ++LN +D + ++S+++V +S DL+ A +++S+ D
Sbjct: 3 TSRRVERVSSLIKREVSLLLLNG-IKDDRVGAGIVSVTDVDVSGDLQHAKIFVSIYGTDE 61
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ ++ L ++R +G + LR PE+ F D SL+ K+ L+
Sbjct: 62 AKAETMAGLKSATGYVRSELGHRV-GLRRTPEVVFLEDHSLERGDKMLLLLN 112
>gi|114321096|ref|YP_742779.1| ribosome-binding factor A [Alkalilimnicola ehrlichii MLHE-1]
gi|122311320|sp|Q0A798|RBFA_ALHEH RecName: Full=Ribosome-binding factor A
gi|114227490|gb|ABI57289.1| ribosome-binding factor A [Alkalilimnicola ehrlichii MLHE-1]
Length = 130
Score = 122 bits (308), Expect = 1e-26, Method: Composition-based stats.
Identities = 33/125 (26%), Positives = 66/125 (52%), Gaps = 7/125 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
P++ R RVGE+++ L +I +E +D + ++++SEV +S DL A V+++
Sbjct: 2 PRDFPRTRRVGEQIQRELAELI-RDELRDPRLG--MVTVSEVTVSRDLAHAKVFVTALGG 58
Query: 66 VSPD--RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIP 123
D + + L ++R +G+ LR +R VP L F++DT+ +L+ L+ +
Sbjct: 59 SDEDNAKTVEVLTRAAGYLRKLLGQRLR-IRQVPALHFQHDTAFDRGDRLSRLI-DEAVE 116
Query: 124 VALEK 128
++
Sbjct: 117 EDRQQ 121
>gi|307546726|ref|YP_003899205.1| ribosome-binding factor A [Halomonas elongata DSM 2581]
gi|307218750|emb|CBV44020.1| ribosome-binding factor A [Halomonas elongata DSM 2581]
Length = 139
Score = 122 bits (308), Expect = 1e-26, Method: Composition-based stats.
Identities = 34/125 (27%), Positives = 70/125 (56%), Gaps = 8/125 (6%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
+ +R RV ++++ L V++ E +D + ++++S V +S DL A V+++L +
Sbjct: 2 REFKRTDRVADQLQKELA-VLIQREIKDPRLG--MVTVSGVEVSRDLGYADVHVTLLGEQ 58
Query: 67 SPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIP 123
+R+ ++ L F+R +I R ++ LR+VPELRF YD S+ +L++L+ +
Sbjct: 59 DAERIKENMAVLKRAAGFLRSQIARRIK-LRHVPELRFHYDESVVRGQRLSSLI-DEAVA 116
Query: 124 VALEK 128
++
Sbjct: 117 NDRDR 121
>gi|260775408|ref|ZP_05884305.1| ribosome-binding factor A [Vibrio coralliilyticus ATCC BAA-450]
gi|260608589|gb|EEX34754.1| ribosome-binding factor A [Vibrio coralliilyticus ATCC BAA-450]
Length = 137
Score = 122 bits (308), Expect = 1e-26, Method: Composition-based stats.
Identities = 34/115 (29%), Positives = 63/115 (54%), Gaps = 6/115 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP-- 63
K R RV ++++ L +IL E +D + +++IS+V +S DL A V+++
Sbjct: 2 SKEFSRTQRVSQQLQKELA-MILQREVRDSRLG--MVTISDVEVSRDLAYAKVFVTFLCV 58
Query: 64 LDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ +P+ + AL + IR +G+ +R LR PE+RF YD +L +++ L+
Sbjct: 59 GEQTPESCLKALREHEVHIRMMLGKRIR-LRLTPEIRFEYDNTLVEGMRMSNLVS 112
>gi|254455287|ref|ZP_05068716.1| ribosome-binding factor A [Candidatus Pelagibacter sp. HTCC7211]
gi|207082289|gb|EDZ59715.1| ribosome-binding factor A [Candidatus Pelagibacter sp. HTCC7211]
Length = 122
Score = 122 bits (308), Expect = 1e-26, Method: Composition-based stats.
Identities = 33/111 (29%), Positives = 59/111 (53%), Gaps = 1/111 (0%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
S+R LRVGE ++ +L + + NE + + + I+++EV MS DL++A Y+
Sbjct: 10 SQRQLRVGEMIKQSLSMIFIRNEAKVPNLETNTITVTEVRMSQDLKIAKAYVLPLGGKDA 69
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
D VI L IR + + + ++++P+L FR D S + K+ L+
Sbjct: 70 DEVIKVLKEYSFLIRKILSQKV-VMKFLPKLLFRKDESFEYAEKIENLIKQ 119
>gi|156975662|ref|YP_001446569.1| ribosome-binding factor A [Vibrio harveyi ATCC BAA-1116]
gi|156527256|gb|ABU72342.1| hypothetical protein VIBHAR_03395 [Vibrio harveyi ATCC BAA-1116]
Length = 137
Score = 122 bits (308), Expect = 1e-26, Method: Composition-based stats.
Identities = 34/115 (29%), Positives = 64/115 (55%), Gaps = 6/115 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP-- 63
K R RV ++++ L +IL E +D + +++IS+V +S DL A V+++
Sbjct: 4 SKEFSRTQRVSQQLQKELA-MILQREVRDSRLG--MVTISDVEVSRDLAYAKVFVTFLCV 60
Query: 64 LDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ +P+ ++AL + IR +G+ +R LR PE+RF YD +L +++ L+
Sbjct: 61 GEQTPESCLAALREHEVHIRMMLGKRIR-LRLTPEIRFYYDNTLVEGMRMSNLVS 114
>gi|297183949|gb|ADI20070.1| hypothetical protein [uncultured alpha proteobacterium
EB080_L11F12]
Length = 135
Score = 122 bits (308), Expect = 1e-26, Method: Composition-based stats.
Identities = 36/121 (29%), Positives = 62/121 (51%), Gaps = 1/121 (0%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
S+R LRVGE +R A+ V+L + D + +++ EV + DL++A VY+
Sbjct: 11 GPSQRQLRVGEMLRRAVSDVLLRGDIHDADLVHVSVTVGEVRSTPDLKLAIVYVLPLGGE 70
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVAL 126
+ + VI ALN N IR + + L +L+Y P+L+F D + + L+ + +
Sbjct: 71 NANIVIDALNRNKYEIRRSVNK-LVSLKYSPDLKFVLDRTFDQLDETRRLLDQEIVKKDV 129
Query: 127 E 127
E
Sbjct: 130 E 130
>gi|218133593|ref|ZP_03462397.1| hypothetical protein BACPEC_01462 [Bacteroides pectinophilus ATCC
43243]
gi|217990968|gb|EEC56974.1| hypothetical protein BACPEC_01462 [Bacteroides pectinophilus ATCC
43243]
Length = 136
Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats.
Identities = 38/128 (29%), Positives = 64/128 (50%), Gaps = 6/128 (4%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
M+N KNS + R+ EV+ L +I N E +D I + S+ V ++ DL+ YI
Sbjct: 1 MENDMRKNSIKNTRINGEVQRELSNIIHN-EIKDPRIHP-MTSVVTVEVAPDLKTCKAYI 58
Query: 61 SLPLDVS-PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
S+ D I+ L +IR + ++ NLR PE+RF D S++ +++ L+
Sbjct: 59 SVLGDEKAQQDTIAGLKSAEGYIRRELAHTV-NLRNTPEIRFILDQSIEYGVRMSRLI-- 115
Query: 120 PKIPVALE 127
++ LE
Sbjct: 116 DEVNAGLE 123
>gi|168333343|ref|ZP_02691627.1| ribosome-binding factor A [Epulopiscium sp. 'N.t. morphotype B']
Length = 116
Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats.
Identities = 32/110 (29%), Positives = 62/110 (56%), Gaps = 1/110 (0%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
+++ +RV EE++ + +I + +D + ++S++ V + DL+ A ++IS+ D
Sbjct: 3 NQKIIRVNEEIQKEVAEIIRGDSIKDARMKDIMVSVTAVDTTTDLKNAKIFISVLQDNKK 62
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
D V+ LN + KFIR + R + NLR PE+ F+ D S+ K+ ++
Sbjct: 63 DDVLDVLNGSSKFIRKELARRI-NLRNTPEISFKLDNSIAYGIKMAKIIH 111
>gi|323495470|ref|ZP_08100545.1| ribosome-binding factor A [Vibrio sinaloensis DSM 21326]
gi|323319467|gb|EGA72403.1| ribosome-binding factor A [Vibrio sinaloensis DSM 21326]
Length = 135
Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats.
Identities = 34/115 (29%), Positives = 63/115 (54%), Gaps = 6/115 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP-- 63
K R RV ++++ L +IL E +D + +++IS+V +S DL A V+++
Sbjct: 2 SKEFSRTQRVAQQLQKELA-MILQREVRDSRLG--MVTISDVEVSRDLAYAKVFVTFLCV 58
Query: 64 LDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ +P+ + AL + IR +G+ +R LR PE+RF YD +L +++ L+
Sbjct: 59 GEQTPESCLEALREHEVHIRMMLGKRIR-LRLTPEVRFHYDNTLVEGMRMSNLVS 112
>gi|332799225|ref|YP_004460724.1| Ribosome-binding factor A [Tepidanaerobacter sp. Re1]
gi|332696960|gb|AEE91417.1| Ribosome-binding factor A [Tepidanaerobacter sp. Re1]
Length = 123
Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats.
Identities = 37/123 (30%), Positives = 64/123 (52%), Gaps = 4/123 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
+ R R+ EE++ + +I N++ +D I +IS+++V ++ DL ATV+IS D
Sbjct: 1 MDFSRNERIAEEIKKGISEII-NSDLKDPRIEG-LISVTKVKVTKDLGHATVFISFYGDK 58
Query: 67 SP-DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
+ D + FIR + +R ++Y+PEL FR D S++ +N L+ K
Sbjct: 59 TKRDTTFDVIQNAKNFIRHELASKIR-IKYMPELSFRIDESIEYGIHINKLLEEIKKQKQ 117
Query: 126 LEK 128
EK
Sbjct: 118 EEK 120
>gi|212634075|ref|YP_002310600.1| ribosome-binding factor A [Shewanella piezotolerans WP3]
gi|226736651|sp|B8CKH4|RBFA_SHEPW RecName: Full=Ribosome-binding factor A
gi|212555559|gb|ACJ28013.1| Ribosome-binding factor A [Shewanella piezotolerans WP3]
Length = 142
Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 60/116 (51%), Gaps = 6/116 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K R R+ ++++ L V+L + +D I +++++V +S DL A V+++ +
Sbjct: 2 AKEFSRTRRIAQQLQQELA-VVLQRDMKDPRIG--FVTVNDVDVSRDLSYAKVFVTFFEE 58
Query: 66 VSP--DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ AL+ +IR + ++ LR +PELRF YD+SL +++ L+
Sbjct: 59 DEKLVQEKVEALDAAAGYIRSLVAGRMK-LRVMPELRFIYDSSLVEGMRMSNLVSR 113
>gi|312885212|ref|ZP_07744891.1| ribosome-binding factor A [Vibrio caribbenthicus ATCC BAA-2122]
gi|309367152|gb|EFP94725.1| ribosome-binding factor A [Vibrio caribbenthicus ATCC BAA-2122]
Length = 136
Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats.
Identities = 34/115 (29%), Positives = 63/115 (54%), Gaps = 6/115 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP-- 63
K R RV ++++ L +IL E +D + +++IS+V +S DL A V+++
Sbjct: 2 SKEFSRTQRVAQQLQKELA-LILQREVRDSRLG--MVTISDVEVSRDLAYAKVFVTFLCV 58
Query: 64 LDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ +P+ + AL + IR +G+ +R LR PE+RF YD +L +++ L+
Sbjct: 59 GEQTPESCLEALREHEVHIRMMLGKRIR-LRLTPEVRFYYDNTLVEGMRMSNLVS 112
>gi|325479406|gb|EGC82502.1| ribosome-binding factor A [Anaerococcus prevotii ACS-065-V-Col13]
Length = 128
Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats.
Identities = 34/113 (30%), Positives = 63/113 (55%), Gaps = 4/113 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLIS-RDVISISEVCMSVDLRVATVYISLPLD 65
N RR R+ EV+ L ++ ++ D +S ++SI++V ++ DL A Y+S+ D
Sbjct: 1 MNKRRTERISSEVKKELSKIL-RDDLNDPRLSMEAMVSITDVEVTNDLSYADCYVSVLGD 59
Query: 66 V-SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ + V+ AL+ +I+ IG +R LR +PE RF+ D S++ ++ L+
Sbjct: 60 SHNKEDVLEALDQAKGYIKILIGERMR-LRSMPEFRFKLDESIERGAYMDKLI 111
>gi|329119691|ref|ZP_08248372.1| ribosome-binding factor A [Neisseria bacilliformis ATCC BAA-1200]
gi|327464288|gb|EGF10592.1| ribosome-binding factor A [Neisseria bacilliformis ATCC BAA-1200]
Length = 123
Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 56/117 (47%), Gaps = 4/117 (3%)
Query: 3 NKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL 62
NK + R RV E++ L ++ +D I+I+EV +S D AT+Y ++
Sbjct: 2 NKTRRGYARQDRVKEQIMRELAEMV-RTGLKDPR--AGFITINEVDVSRDYSHATIYYTV 58
Query: 63 PLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
D + D +AL +R + + ++ + PEL F+YD SL+ ++ L+
Sbjct: 59 LDDSTRDITEAALEHAKGHLRSELAKRIKLFK-TPELHFKYDQSLERGMSISHLIEQ 114
>gi|323692924|ref|ZP_08107146.1| ribosome-binding factor A [Clostridium symbiosum WAL-14673]
gi|323503007|gb|EGB18847.1| ribosome-binding factor A [Clostridium symbiosum WAL-14673]
Length = 139
Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats.
Identities = 31/113 (27%), Positives = 52/113 (46%), Gaps = 4/113 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
KNS + R+ EV+ L +I E +D I + ++ V ++ DL+ YIS+
Sbjct: 3 KNSIKNTRINSEVQKELSEIISR-ELKDPRIHP-MTTVVSVEVTPDLKFCKAYISVLGSE 60
Query: 67 SP-DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ L FIR ++ + + NLR PEL F D S++ + L+
Sbjct: 61 EAGKDTVQGLKSAASFIRTQLAKRI-NLRNTPELSFILDQSIEYGVNMTRLIN 112
>gi|227499289|ref|ZP_03929401.1| ribosome-binding factor A [Anaerococcus tetradius ATCC 35098]
gi|227218640|gb|EEI83874.1| ribosome-binding factor A [Anaerococcus tetradius ATCC 35098]
Length = 125
Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats.
Identities = 35/114 (30%), Positives = 62/114 (54%), Gaps = 4/114 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISR-DVISISEVCMSVDLRVATVYISLPLD 65
N RR R+ EV+ L ++ ++ D +S ++SI++V ++ DL A YIS+ D
Sbjct: 1 MNKRRTERISSEVKKELSKIL-RDDLSDPRLSNEAMVSITDVEVTNDLSFADCYISVLGD 59
Query: 66 V-SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ V+ AL+ +I+ IG +R LR +PE RF+ D S++ ++ L+
Sbjct: 60 EQKKEDVLDALDQAKGYIKILIGERMR-LRSMPEFRFKLDNSIEHGAYMDKLIA 112
>gi|315924371|ref|ZP_07920593.1| ribosome-binding factor A [Pseudoramibacter alactolyticus ATCC
23263]
gi|315622250|gb|EFV02209.1| ribosome-binding factor A [Pseudoramibacter alactolyticus ATCC
23263]
Length = 121
Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 61/116 (52%), Gaps = 3/116 (2%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-DVS 67
S R ++ +++ L +I+ + +D+ + + +SI+ V + DL+VATVYIS+ +
Sbjct: 3 SHRKEKIDAQIQRELS-LIIRQKTKDKRLHNNTLSITGVKATPDLKVATVYISVLGSEED 61
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIP 123
V+ AL F+R +G+ ++ +PEL F+ D S+ ++A++
Sbjct: 62 AQGVMEALKKAKGFLRSSLGKIMKT-HMIPELHFKRDESVAYGMHIDAILNELHQQ 116
>gi|153835029|ref|ZP_01987696.1| ribosome-binding factor A [Vibrio harveyi HY01]
gi|269961981|ref|ZP_06176336.1| ribosome-binding factor A [Vibrio harveyi 1DA3]
gi|172044101|sp|A7MZI4|RBFA_VIBHB RecName: Full=Ribosome-binding factor A
gi|148868506|gb|EDL67605.1| ribosome-binding factor A [Vibrio harveyi HY01]
gi|269833304|gb|EEZ87408.1| ribosome-binding factor A [Vibrio harveyi 1DA3]
Length = 135
Score = 121 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 34/115 (29%), Positives = 64/115 (55%), Gaps = 6/115 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP-- 63
K R RV ++++ L +IL E +D + +++IS+V +S DL A V+++
Sbjct: 2 SKEFSRTQRVSQQLQKELA-MILQREVRDSRLG--MVTISDVEVSRDLAYAKVFVTFLCV 58
Query: 64 LDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ +P+ ++AL + IR +G+ +R LR PE+RF YD +L +++ L+
Sbjct: 59 GEQTPESCLAALREHEVHIRMMLGKRIR-LRLTPEIRFYYDNTLVEGMRMSNLVS 112
>gi|220934180|ref|YP_002513079.1| ribosome-binding factor A [Thioalkalivibrio sp. HL-EbGR7]
gi|254789772|sp|B8GP03|RBFA_THISH RecName: Full=Ribosome-binding factor A
gi|219995490|gb|ACL72092.1| ribosome-binding factor A [Thioalkalivibrio sp. HL-EbGR7]
Length = 129
Score = 121 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 60/121 (49%), Gaps = 6/121 (4%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
P++ R RVG++++ L +I E +D + +++++ V +S DL A V+ ++
Sbjct: 2 PRDFSRTERVGDQIQRELAELI-RMELKDPRVG--MVTLAGVEVSRDLAHAKVWFTVLGS 58
Query: 66 VSP-DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPV 124
L F+R +GR +R LR VP L F+YD + + +L+AL+ +
Sbjct: 59 EQQIADTTEGLQRAAGFLRRELGRRMR-LRTVPHLHFQYDDTQEKGARLSALI-DKAVAE 116
Query: 125 A 125
Sbjct: 117 D 117
>gi|262370079|ref|ZP_06063406.1| ribosome-binding factor A [Acinetobacter johnsonii SH046]
gi|262315118|gb|EEY96158.1| ribosome-binding factor A [Acinetobacter johnsonii SH046]
Length = 134
Score = 121 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 11/119 (9%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL--- 64
S+R R+ + V+ L +I E +D + +++IS V +S DL A VY+++
Sbjct: 3 GSQRLKRMADTVQRELSELI-RQELKDPRLGG-LVTISAVKVSPDLGYAEVYVTVMGREL 60
Query: 65 -----DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ + + LN F+R +GR ++ R P LRF YD + + L+
Sbjct: 61 GDEQSEAANKETLDVLNKASGFLRHELGRRIKT-RITPRLRFHYDKTNAYGNYMFGLIA 118
>gi|49077912|gb|AAT49730.1| PA4743 [synthetic construct]
Length = 130
Score = 121 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 65/117 (55%), Gaps = 7/117 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K+ R R+G++++ L +I E +D + +++I+ V +S D+ A V+I++
Sbjct: 2 AKDYSRTQRIGDQMQRELAQLIQR-EIKDPRLG--LVTITGVEVSRDVAHAKVFITVMGQ 58
Query: 66 VSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
++ + LN ++R +G+S++ LR VP+L F YD S++ +L+AL+
Sbjct: 59 DDAGKIALNMEILNDAAGYLRMLLGKSMK-LRSVPQLHFHYDESIRRGAELSALIER 114
>gi|323485576|ref|ZP_08090920.1| hypothetical protein HMPREF9474_02671 [Clostridium symbiosum
WAL-14163]
gi|323401094|gb|EGA93448.1| hypothetical protein HMPREF9474_02671 [Clostridium symbiosum
WAL-14163]
Length = 139
Score = 121 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 31/113 (27%), Positives = 52/113 (46%), Gaps = 4/113 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
KNS + R+ EV+ L +I E +D I + ++ V ++ DL+ YIS+
Sbjct: 3 KNSIKNTRINSEVQKELSEIISR-ELKDPRIHP-MTTVVSVEVTPDLKFCKAYISVLGSE 60
Query: 67 SP-DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ L FIR ++ + + NLR PEL F D S++ + L+
Sbjct: 61 EAGKDTVQGLKSAASFIRTQLAKRI-NLRNTPELSFILDQSIEYGVNMTRLIN 112
>gi|295696159|ref|YP_003589397.1| ribosome-binding factor A [Bacillus tusciae DSM 2912]
gi|295411761|gb|ADG06253.1| ribosome-binding factor A [Bacillus tusciae DSM 2912]
Length = 119
Score = 121 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 31/110 (28%), Positives = 57/110 (51%), Gaps = 5/110 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-DVSPD 69
R RV E+++ + ++ +E +D I ++I+ V +S DL+ A V+ S+ D
Sbjct: 5 RPSRVAEQIKKEITDILY-HELKDPRIG--FVTITGVEVSRDLQHAKVFASVLGSDEEKA 61
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ AL FIR +GR +R L + PE+ F+ DTS +++ ++
Sbjct: 62 LSLEALQKATGFIRSEVGRRIR-LHHTPEIVFKLDTSEDYSQRISHVIRQ 110
>gi|74316714|ref|YP_314454.1| ribosome-binding factor A [Thiobacillus denitrificans ATCC 25259]
gi|123612206|sp|Q3SKX2|RBFA_THIDA RecName: Full=Ribosome-binding factor A
gi|74056209|gb|AAZ96649.1| ribosome-binding factor A [Thiobacillus denitrificans ATCC 25259]
Length = 124
Score = 121 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 31/124 (25%), Positives = 61/124 (49%), Gaps = 6/124 (4%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI-SLPL 64
PK+ RA RV ++++ L +I E +D + +++I+EV ++ D+ A VY ++
Sbjct: 2 PKDFPRARRVADQIQRELPELI-RQEVKDPRVG--MLTITEVEVNRDMEFAKVYFTTMGG 58
Query: 65 DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPV 124
+ + L F+R ++ + LR VP+L F YD S++ L+ L+ +
Sbjct: 59 EAEHAACLQGLQRASGFLRSQLSHRM-QLRVVPKLTFVYDRSVEHGMALSRLIET-AVAE 116
Query: 125 ALEK 128
+
Sbjct: 117 DAKH 120
>gi|89072576|ref|ZP_01159148.1| ribosome-binding factor A [Photobacterium sp. SKA34]
gi|89051680|gb|EAR57133.1| ribosome-binding factor A [Photobacterium sp. SKA34]
Length = 131
Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats.
Identities = 34/115 (29%), Positives = 61/115 (53%), Gaps = 6/115 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP-- 63
K R RV ++++ L VIL E +D I+ + +IS V +S D+ A +Y++
Sbjct: 2 AKEFSRTQRVAQQLQKELA-VILQREIKDPAIA--MTTISSVDVSRDMNYAKIYVTFFPI 58
Query: 64 LDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ + + ++AL +IR +G+ +R LR PEL F +D SL +++ L+
Sbjct: 59 GEQTAEGSLAALREMAPYIRSLLGKEIR-LRVTPELNFIFDQSLTEGMRISNLVS 112
>gi|260887253|ref|ZP_05898516.1| ribosome-binding factor A [Selenomonas sputigena ATCC 35185]
gi|330838990|ref|YP_004413570.1| Ribosome-binding factor A [Selenomonas sputigena ATCC 35185]
gi|260863315|gb|EEX77815.1| ribosome-binding factor A [Selenomonas sputigena ATCC 35185]
gi|329746754|gb|AEC00111.1| Ribosome-binding factor A [Selenomonas sputigena ATCC 35185]
Length = 119
Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats.
Identities = 32/108 (29%), Positives = 58/108 (53%), Gaps = 5/108 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-DVSPD 69
R +V E ++ + +IL E +D I +++++V M+ DLR A +++S+ D +
Sbjct: 5 RIEKVQELMKQEISQIILQ-ELKDPRIG--FVTVTKVEMTGDLREAKIFVSIMGKDEALK 61
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ L ++ FIR IG+ +R LR+ PE+ F D SL + L+
Sbjct: 62 DTLQGLKSSLGFIRREIGKRIR-LRFTPEISFALDDSLAYSSHIQELL 108
>gi|152989168|ref|YP_001350785.1| ribosome-binding factor A [Pseudomonas aeruginosa PA7]
gi|166219391|sp|A6VCK0|RBFA_PSEA7 RecName: Full=Ribosome-binding factor A
gi|150964326|gb|ABR86351.1| ribosome-binding factor A [Pseudomonas aeruginosa PA7]
Length = 128
Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 66/117 (56%), Gaps = 7/117 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K+ R R+G++++ L +I E +D + +++I+ V +S D+ A V+I++
Sbjct: 2 AKDYSRTQRIGDQMQRELAQLIQR-EIKDPRLG--LVTITGVEVSRDVAHAKVFITVMGQ 58
Query: 66 VSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+RV + LN ++R +G+S++ LR VP+L F YD S++ +L+AL+
Sbjct: 59 DDAERVALNMEILNDAAGYLRMLLGKSMK-LRSVPQLHFHYDESIRRGAELSALIER 114
>gi|114331631|ref|YP_747853.1| ribosome-binding factor A [Nitrosomonas eutropha C91]
gi|122313590|sp|Q0AFJ4|RBFA_NITEC RecName: Full=Ribosome-binding factor A
gi|114308645|gb|ABI59888.1| ribosome-binding factor A [Nitrosomonas eutropha C91]
Length = 117
Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats.
Identities = 34/113 (30%), Positives = 60/113 (53%), Gaps = 5/113 (4%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI-SLPL 64
PK+ R LRV ++V+ L +I NE D I +I+++ V ++ D A V+ +L
Sbjct: 2 PKDFSRTLRVADQVQRELASLI-QNEIMDPRIG--MITLTGVEVTRDYTYAKVFYTTLGG 58
Query: 65 DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ + L F+R ++ +R LR +P+L+F YD S++ KL+ L+
Sbjct: 59 NENAQLAEEGLKRAAGFLRSQLAGKIR-LRIIPKLQFVYDESIERGIKLSRLI 110
>gi|78213858|ref|YP_382637.1| ribosome-binding factor A [Synechococcus sp. CC9605]
gi|123577495|sp|Q3AH50|RBFA_SYNSC RecName: Full=Ribosome-binding factor A
gi|78198317|gb|ABB36082.1| ribosome-binding factor A [Synechococcus sp. CC9605]
Length = 140
Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats.
Identities = 31/115 (26%), Positives = 59/115 (51%), Gaps = 3/115 (2%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD-V 66
RR RV +R + +++N +D + ++SI+EV +S DL+ +++S+ +
Sbjct: 3 QGRRVERVAALIRKEVSELMING-IRDERVHHGMVSITEVEVSGDLQHCKIFVSVFGEAQ 61
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
D+V+ L F+RG +GR L +R PE+ F+ D L+ + L+ +
Sbjct: 62 ERDQVLEGLQAASGFLRGELGRRL-QMRRAPEVVFQLDRGLERGTSVLGLLNRLE 115
>gi|261253849|ref|ZP_05946422.1| ribosome-binding factor A [Vibrio orientalis CIP 102891]
gi|260937240|gb|EEX93229.1| ribosome-binding factor A [Vibrio orientalis CIP 102891]
Length = 135
Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats.
Identities = 34/115 (29%), Positives = 63/115 (54%), Gaps = 6/115 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP-- 63
K R RV ++++ L +IL E +D + +++IS+V +S DL A V+++
Sbjct: 2 SKEFSRTQRVAQQLQKELA-MILQREVRDSRLG--MVTISDVEVSRDLAYAKVFVTFLCI 58
Query: 64 LDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ +P+ + AL + IR +G+ +R LR PE+RF YD +L +++ L+
Sbjct: 59 GEQTPESCLEALREHEVHIRMMLGKRIR-LRLTPEVRFYYDNTLVEGMRMSNLVS 112
>gi|284052769|ref|ZP_06382979.1| ribosome-binding factor A [Arthrospira platensis str. Paraca]
gi|291565861|dbj|BAI88133.1| ribosome-binding factor A [Arthrospira platensis NIES-39]
Length = 137
Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats.
Identities = 31/111 (27%), Positives = 58/111 (52%), Gaps = 3/111 (2%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-DVSP 68
RR RV ++ + V+L + +D + ++SI+EV +S DL+ A +++S+ + +
Sbjct: 5 RRVSRVASLIKREVSQVLLY-DIKDDRVGTGMVSITEVEVSGDLQHAKIFVSIYGTEEAR 63
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ L +IR +G+ +R LR PE+ F D SL+ K+ L+
Sbjct: 64 RSTMEGLRSATGYIRSHLGKHIR-LRRTPEVVFLEDRSLERGDKIIDLLNQ 113
>gi|33864228|ref|NP_895788.1| ribosome-binding factor A [Prochlorococcus marinus str. MIT 9313]
gi|39931781|sp|Q7V4I8|RBFA_PROMM RecName: Full=Ribosome-binding factor A
gi|33635812|emb|CAE22137.1| Ribosome-binding factor A [Prochlorococcus marinus str. MIT 9313]
Length = 142
Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 55/119 (46%), Gaps = 3/119 (2%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV- 66
RR RV +R ++++ +D + + ++SI+ V +S DL+ +++S+ +
Sbjct: 3 PGRRVERVAALIRRETSELLIHG-IRDERVHQGMVSITNVEVSGDLQHCKIFVSIYGEEI 61
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
V+ L F+RG +GR L +R PE+ F D ++ + L+ +
Sbjct: 62 QRSEVLEGLEAASGFLRGELGRRL-QMRRAPEVHFHLDRGIEKGTSVLNLLEQLEQQRE 119
>gi|289676026|ref|ZP_06496916.1| ribosome-binding factor A [Pseudomonas syringae pv. syringae FF5]
Length = 117
Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 62/117 (52%), Gaps = 7/117 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K R R+G++++ L +I E +D + +++I+ V +S D+ A +++++
Sbjct: 2 AKEYSRTQRIGDQMQRELAQLI-RREIKDPRVG--LVTITAVDVSRDVGHAKIFMTVMGQ 58
Query: 66 VSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
S + + I LN F+R ++ R ++ LR VP+L F YD S+ L+AL+
Sbjct: 59 DSAEEIAQTIKVLNAAAGFLRMQLAREMK-LRSVPQLHFHYDESVVRGAHLSALIER 114
>gi|331082954|ref|ZP_08332074.1| ribosome-binding factor A [Lachnospiraceae bacterium 6_1_63FAA]
gi|330399949|gb|EGG79607.1| ribosome-binding factor A [Lachnospiraceae bacterium 6_1_63FAA]
Length = 128
Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats.
Identities = 33/126 (26%), Positives = 61/126 (48%), Gaps = 8/126 (6%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
KNS + RV EV+ L +I +D I + S++ V ++ DL+ YIS+ +
Sbjct: 3 KNSIKNTRVNAEVQHELANLIREG-IKDPRIHP-MTSVTAVEVAPDLKTCRAYISVMGNE 60
Query: 67 S-PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL----PK 121
+ I+ L +IR ++ +++ NLR PE+RF D S++ ++ L+ +
Sbjct: 61 EAKNNTIAGLKSAEGYIRRQLAKNI-NLRNTPEIRFILDESIEYGVAMSKLIDEVTGKEE 119
Query: 122 IPVALE 127
+ E
Sbjct: 120 VQEDGE 125
>gi|160940468|ref|ZP_02087813.1| hypothetical protein CLOBOL_05358 [Clostridium bolteae ATCC
BAA-613]
gi|158437048|gb|EDP14815.1| hypothetical protein CLOBOL_05358 [Clostridium bolteae ATCC
BAA-613]
Length = 133
Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats.
Identities = 33/123 (26%), Positives = 57/123 (46%), Gaps = 6/123 (4%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
KNS + R+ EV+ L +I +D I + S+ V ++ DL+ YIS+ D
Sbjct: 3 KNSIKNTRINMEVQRELSEII-RGGIKDPRIHP-MTSVVSVEVTPDLKFCKAYISVLGDE 60
Query: 67 SP-DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
I L ++R + R + NLR PEL+F D S++ ++ L+ ++
Sbjct: 61 EAGKSTIQGLKSAEGYVRRELARRV-NLRNTPELKFILDQSIEYGVNMSRLI--DEVTKD 117
Query: 126 LEK 128
L +
Sbjct: 118 LHQ 120
>gi|256544699|ref|ZP_05472071.1| ribosome-binding factor A [Anaerococcus vaginalis ATCC 51170]
gi|256399588|gb|EEU13193.1| ribosome-binding factor A [Anaerococcus vaginalis ATCC 51170]
Length = 127
Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats.
Identities = 32/113 (28%), Positives = 63/113 (55%), Gaps = 2/113 (1%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
+ RR L++ +++ L ++ + RL ++SI+EV ++ DL A +++S+ D
Sbjct: 1 MDKRRTLKISSQMQKELSKILAEDINDPRLSDNVIVSITEVEVTNDLSYADIFVSVLGDE 60
Query: 67 -SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ VI AL+ +++ IG +R LR +PE RF+YD S++ ++ L+
Sbjct: 61 NKKESVIEALDQAKGYMKKLIGERMR-LRSMPEFRFKYDNSIEHGVYMDKLIA 112
>gi|212696547|ref|ZP_03304675.1| hypothetical protein ANHYDRO_01085 [Anaerococcus hydrogenalis DSM
7454]
gi|325847937|ref|ZP_08170108.1| ribosome-binding factor A [Anaerococcus hydrogenalis
ACS-025-V-Sch4]
gi|212676483|gb|EEB36090.1| hypothetical protein ANHYDRO_01085 [Anaerococcus hydrogenalis DSM
7454]
gi|325480806|gb|EGC83860.1| ribosome-binding factor A [Anaerococcus hydrogenalis
ACS-025-V-Sch4]
Length = 127
Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats.
Identities = 31/113 (27%), Positives = 62/113 (54%), Gaps = 2/113 (1%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
+ RR L++ +++ L ++ + RL ++SI++V ++ DL A +++S+ D
Sbjct: 1 MDKRRTLKISSQMQKELSKILAEDINDPRLSDNVIVSITDVEVTNDLSYADIFVSVLGDD 60
Query: 67 -SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ VI AL +++ IG +R LR +PE RF+YD S++ ++ L+
Sbjct: 61 SKKESVIEALEQAKGYMKKLIGERMR-LRSMPEFRFKYDNSIEHGVYMDKLIA 112
>gi|119898397|ref|YP_933610.1| ribosome-binding factor A [Azoarcus sp. BH72]
gi|166218420|sp|A1K7B8|RBFA_AZOSB RecName: Full=Ribosome-binding factor A
gi|119670810|emb|CAL94723.1| RbfA protein [Azoarcus sp. BH72]
Length = 126
Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 60/121 (49%), Gaps = 6/121 (4%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI-SLPL 64
PK R+ RV E++R L +I E +D + I++++V +S D A V+ S+
Sbjct: 2 PKEYSRSQRVVEQIRRELAELI-RLEVKDPRVG--FITLTDVEISPDYAHAKVFFTSMTG 58
Query: 65 DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPV 124
+ S ++ L F+R +GR +R + PEL F YD S++ +L+ L+ +
Sbjct: 59 EESVPEILQGLRRASGFLRRELGRRVR-IHTTPELHFHYDRSVEEGSRLSRLI-DDAVRE 116
Query: 125 A 125
Sbjct: 117 D 117
>gi|258516330|ref|YP_003192552.1| ribosome-binding factor A [Desulfotomaculum acetoxidans DSM 771]
gi|257780035|gb|ACV63929.1| ribosome-binding factor A [Desulfotomaculum acetoxidans DSM 771]
Length = 119
Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats.
Identities = 36/115 (31%), Positives = 59/115 (51%), Gaps = 5/115 (4%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-DVSP 68
R R+ E ++ + +I+N E +D I SI+ V +S DL A +++S+ +
Sbjct: 3 HRPERLAESIKKEVSDMIIN-ELKDPRIG--FTSITSVEVSRDLSFAKIFVSVLGTEEEQ 59
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIP 123
+ AL+ FIR IGR +R LR+VPEL F D S+ K+ L+ ++
Sbjct: 60 KATVEALSRANGFIRAEIGRRIR-LRHVPELAFISDQSIAHGTKIMKLLQDVQVQ 113
>gi|238897561|ref|YP_002923240.1| 30S ribosome-binding factor [Candidatus Hamiltonella defensa 5AT
(Acyrthosiphon pisum)]
gi|229465318|gb|ACQ67092.1| 30S ribosome-binding factor [Candidatus Hamiltonella defensa 5AT
(Acyrthosiphon pisum)]
Length = 137
Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats.
Identities = 35/118 (29%), Positives = 59/118 (50%), Gaps = 12/118 (10%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
K RA RV E++ + +IL E +D + ++++S V MS DL A ++++ D+
Sbjct: 2 KEFSRAQRVSHEIQKEIA-LILQREIKDPRVG--MVTVSSVKMSRDLAYAKIFVTFLNDL 58
Query: 67 SPD--------RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNAL 116
+ + I AL +IR +G+++ LR VP L F YD SL ++ L
Sbjct: 59 TENMAPDHHHADGIKALQEASGYIRVLLGKAM-CLRIVPHLTFIYDDSLIEGIRMYNL 115
>gi|323491072|ref|ZP_08096264.1| ribosome-binding factor A [Vibrio brasiliensis LMG 20546]
gi|323314736|gb|EGA67808.1| ribosome-binding factor A [Vibrio brasiliensis LMG 20546]
Length = 136
Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats.
Identities = 34/115 (29%), Positives = 63/115 (54%), Gaps = 6/115 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP-- 63
K R RV ++++ L +IL E +D + +++IS+V +S DL A V+++
Sbjct: 2 SKEFSRTQRVSQQLQKELA-LILQREVRDSRLG--MVTISDVEVSRDLAYAKVFVTFLCV 58
Query: 64 LDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ +P+ + AL + IR +G+ +R LR PE+RF YD +L +++ L+
Sbjct: 59 GEQTPESCLEALREHEVHIRMMLGKRIR-LRLTPEVRFYYDNTLVEGMRMSNLVS 112
>gi|15599937|ref|NP_253431.1| ribosome-binding factor A [Pseudomonas aeruginosa PAO1]
gi|116052890|ref|YP_793207.1| ribosome-binding factor A [Pseudomonas aeruginosa UCBPP-PA14]
gi|296391570|ref|ZP_06881045.1| ribosome-binding factor A [Pseudomonas aeruginosa PAb1]
gi|313109724|ref|ZP_07795664.1| ribosome-binding factor A [Pseudomonas aeruginosa 39016]
gi|20978658|sp|Q9HV56|RBFA_PSEAE RecName: Full=Ribosome-binding factor A
gi|122257099|sp|Q02FS9|RBFA_PSEAB RecName: Full=Ribosome-binding factor A
gi|9951005|gb|AAG08129.1|AE004888_4 ribosome-binding factor A [Pseudomonas aeruginosa PAO1]
gi|115588111|gb|ABJ14126.1| ribosome-binding factor A [Pseudomonas aeruginosa UCBPP-PA14]
gi|310882166|gb|EFQ40760.1| ribosome-binding factor A [Pseudomonas aeruginosa 39016]
Length = 129
Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 65/117 (55%), Gaps = 7/117 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K+ R R+G++++ L +I E +D + +++I+ V +S D+ A V+I++
Sbjct: 2 AKDYSRTQRIGDQMQRELAQLIQR-EIKDPRLG--LVTITGVEVSRDVAHAKVFITVMGQ 58
Query: 66 VSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
++ + LN ++R +G+S++ LR VP+L F YD S++ +L+AL+
Sbjct: 59 DDAGKIALNMEILNDAAGYLRMLLGKSMK-LRSVPQLHFHYDESIRRGAELSALIER 114
>gi|83644102|ref|YP_432537.1| ribosome-binding factor A [Hahella chejuensis KCTC 2396]
gi|123534477|sp|Q2SML2|RBFA_HAHCH RecName: Full=Ribosome-binding factor A
gi|83632145|gb|ABC28112.1| ribosome-binding factor A [Hahella chejuensis KCTC 2396]
Length = 135
Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 61/119 (51%), Gaps = 11/119 (9%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL- 64
+ R RV E+++ L +I E +D + +++++ V +S DL A VY+++
Sbjct: 2 AREFSRLDRVAEQIQKELAQLIQR-ELKDPRLG--MVTVNSVKVSKDLSYADVYVTVLNL 58
Query: 65 ------DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ + L F+R +GR+++ LR +P+LRF YD S+ + +L AL+
Sbjct: 59 KDVEDDGDASKASLKVLESAAGFLRSELGRAIK-LRVMPQLRFHYDASVSNAQRLGALI 116
>gi|27365058|ref|NP_760586.1| ribosome-binding factor A [Vibrio vulnificus CMCP6]
gi|161486605|ref|NP_935500.2| ribosome-binding factor A [Vibrio vulnificus YJ016]
gi|320155442|ref|YP_004187821.1| ribosome-binding factor A [Vibrio vulnificus MO6-24/O]
gi|29427705|sp|Q8DBV9|RBFA_VIBVU RecName: Full=Ribosome-binding factor A
gi|39931703|sp|Q7MI10|RBFA_VIBVY RecName: Full=Ribosome-binding factor A
gi|27361204|gb|AAO10113.1| ribosome-binding factor A [Vibrio vulnificus CMCP6]
gi|319930754|gb|ADV85618.1| ribosome-binding factor A [Vibrio vulnificus MO6-24/O]
Length = 131
Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats.
Identities = 34/115 (29%), Positives = 65/115 (56%), Gaps = 6/115 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP-- 63
K+ R RV ++++ L +IL E +D + +++IS+V +S DL A V+++
Sbjct: 2 SKDFSRTQRVSQQLQKELA-MILQREVRDSRLG--MVTISDVEVSRDLAYAKVFVTFLCV 58
Query: 64 LDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ +P+ ++AL + IR +G+ +R LR PE+RF YD +L +++ L+
Sbjct: 59 GEQTPESCLAALREHEVHIRMMLGKRIR-LRLTPEVRFYYDNTLVEGMRMSNLVT 112
>gi|218246068|ref|YP_002371439.1| ribosome-binding factor A [Cyanothece sp. PCC 8801]
gi|257059118|ref|YP_003137006.1| ribosome-binding factor A [Cyanothece sp. PCC 8802]
gi|226736642|sp|B7K2E7|RBFA_CYAP8 RecName: Full=Ribosome-binding factor A
gi|218166546|gb|ACK65283.1| ribosome-binding factor A [Cyanothece sp. PCC 8801]
gi|256589284|gb|ACV00171.1| ribosome-binding factor A [Cyanothece sp. PCC 8802]
Length = 128
Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats.
Identities = 32/115 (27%), Positives = 61/115 (53%), Gaps = 3/115 (2%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS 67
NSRR RV ++ + ++L ++ +D + ++S++EV +S DL+ AT+++S+
Sbjct: 3 NSRRVSRVSSLIKREVSQMLL-HDIKDDRVGAGMVSVTEVDVSGDLQHATIFVSIYGSEQ 61
Query: 68 PD-RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+ L + F+R + +R LR PE+ FR D SL+ ++ L+ K
Sbjct: 62 AQAETMEGLKSSTSFVRRELSHRMR-LRRSPEVVFRQDHSLERGDRMVHLLNQIK 115
>gi|71908069|ref|YP_285656.1| ribosome-binding factor A [Dechloromonas aromatica RCB]
gi|123627144|sp|Q47D95|RBFA_DECAR RecName: Full=Ribosome-binding factor A
gi|71847690|gb|AAZ47186.1| ribosome-binding factor A [Dechloromonas aromatica RCB]
Length = 123
Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 59/119 (49%), Gaps = 7/119 (5%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
MK K +R+ RV E+VR L +I E +D + +IS++ V ++ D A V+
Sbjct: 1 MKKKG---FQRSDRVAEQVRRDLADLI-RTELKDPRVG--MISLTAVELTPDYAHAKVFF 54
Query: 61 SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ + V L F+R +G+ + ++ +PEL F YD+S++ L+ L+
Sbjct: 55 ATLNSEHLEEVERGLKRAAGFLRRELGKRI-HIHTLPELHFVYDSSIERGASLSLLIDQ 112
>gi|107103842|ref|ZP_01367760.1| hypothetical protein PaerPA_01004913 [Pseudomonas aeruginosa PACS2]
gi|218893838|ref|YP_002442707.1| ribosome-binding factor A [Pseudomonas aeruginosa LESB58]
gi|254244355|ref|ZP_04937677.1| ribosome-binding factor A [Pseudomonas aeruginosa 2192]
gi|226736650|sp|B7V1F5|RBFA_PSEA8 RecName: Full=Ribosome-binding factor A
gi|126197733|gb|EAZ61796.1| ribosome-binding factor A [Pseudomonas aeruginosa 2192]
gi|218774066|emb|CAW29882.1| ribosome-binding factor A [Pseudomonas aeruginosa LESB58]
Length = 130
Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 65/117 (55%), Gaps = 7/117 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K+ R R+G++++ L +I E +D + +++I+ V +S D+ A V+I++
Sbjct: 2 AKDYSRTQRIGDQMQRELAQLIQR-EIKDPRLG--LVTITGVEVSRDVAHAKVFITVMGQ 58
Query: 66 VSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
++ + LN ++R +G+S++ LR VP+L F YD S++ +L+AL+
Sbjct: 59 DDAGKIALNMEILNDAAGYLRMLLGKSMK-LRSVPQLHFHYDESIRRGAELSALIER 114
>gi|71083095|ref|YP_265814.1| ribosome-binding factor A [Candidatus Pelagibacter ubique HTCC1062]
gi|123647144|sp|Q4FNM8|RBFA_PELUB RecName: Full=Ribosome-binding factor A
gi|71062208|gb|AAZ21211.1| Ribosome-binding factor A [Candidatus Pelagibacter ubique HTCC1062]
Length = 122
Score = 120 bits (303), Expect = 5e-26, Method: Composition-based stats.
Identities = 32/111 (28%), Positives = 57/111 (51%), Gaps = 1/111 (0%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
S+R LRVGE +R +L + NE + + + I+++EV MS DL++A Y+
Sbjct: 10 SQRQLRVGEMIRQSLGMIFARNEAKVPNLETNTITVTEVKMSQDLKIAKAYVLPLGGKDS 69
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ VI L IR + + + ++Y+P++ F D S + K+ L+
Sbjct: 70 ELVIKKLKECSFLIRKALSKKI-IMKYLPKILFAKDDSFEYAEKIENLIKQ 119
>gi|225390152|ref|ZP_03759876.1| hypothetical protein CLOSTASPAR_03902 [Clostridium asparagiforme
DSM 15981]
gi|225043786|gb|EEG54032.1| hypothetical protein CLOSTASPAR_03902 [Clostridium asparagiforme
DSM 15981]
Length = 135
Score = 120 bits (303), Expect = 5e-26, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 56/122 (45%), Gaps = 6/122 (4%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
KNS + R+ EV+ L +I +D I + S+ V ++ DL+ YIS+ +
Sbjct: 3 KNSIKNTRINMEVQRELSEII-RGGIKDPRIHP-MTSVIAVEVTPDLKYCKAYISVLGNE 60
Query: 67 SP-DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
I L ++R + R + NLR P+++F D S++ ++ L+ ++
Sbjct: 61 DAGKATIEGLKSAEGYVRRELARRV-NLRNTPQIKFILDQSIEYGVNMSHLI--DEVTKD 117
Query: 126 LE 127
L
Sbjct: 118 LH 119
>gi|71280573|ref|YP_268929.1| ribosome-binding factor A [Colwellia psychrerythraea 34H]
gi|123632666|sp|Q482T8|RBFA_COLP3 RecName: Full=Ribosome-binding factor A
gi|71146313|gb|AAZ26786.1| ribosome-binding factor A [Colwellia psychrerythraea 34H]
Length = 142
Score = 120 bits (303), Expect = 5e-26, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 61/116 (52%), Gaps = 6/116 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
+ R RVG++++ + +++ E +D +S + ++S V ++ DL A ++++ D
Sbjct: 2 AREYARTDRVGQQIQKEIATILMR-EIKDPRLS--MTTVSAVEVTRDLAYAKIFVTFFND 58
Query: 66 VSPD--RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ + L +IR +G+ LR R +P LRF YD+S+ +++AL+
Sbjct: 59 NQDEIKASLEVLAEAEGYIRSLLGKRLRA-RIMPHLRFVYDSSMSEGVRMSALVDQ 113
>gi|149909279|ref|ZP_01897935.1| ribosome-binding factor A [Moritella sp. PE36]
gi|149807596|gb|EDM67544.1| ribosome-binding factor A [Moritella sp. PE36]
Length = 141
Score = 120 bits (303), Expect = 5e-26, Method: Composition-based stats.
Identities = 37/117 (31%), Positives = 65/117 (55%), Gaps = 8/117 (6%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL- 64
K R+ RV ++++ + ++ E +D I ++++S + +S DL A VY++
Sbjct: 2 AKEFSRSRRVAQQLQQEVARILQR-EVKDPRIG--MVTVSSIDLSRDLSYAKVYVTFFNI 58
Query: 65 DVSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
D DRV I+AL +IR +G +++ LR VPELRF YD +L +L++L+
Sbjct: 59 DNDEDRVKEGIAALTAASGYIRSLVGSAMK-LRIVPELRFIYDNTLVEGMRLSSLVT 114
>gi|82702984|ref|YP_412550.1| ribosome-binding factor A [Nitrosospira multiformis ATCC 25196]
gi|123544258|sp|Q2Y7W3|RBFA_NITMU RecName: Full=Ribosome-binding factor A
gi|82411049|gb|ABB75158.1| ribosome-binding factor A [Nitrosospira multiformis ATCC 25196]
Length = 126
Score = 120 bits (303), Expect = 5e-26, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 63/121 (52%), Gaps = 6/121 (4%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
PK+ R LR+ ++++ L +I NE +D I +I+++ V +S D A V+ + +
Sbjct: 2 PKDYSRTLRIADQIQRELADLI-RNELKDPRIG--MITLTGVEVSQDYAHAKVFYTTLHN 58
Query: 66 VSPD-RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPV 124
S + V + L F+R ++ L+ LR +P+L F YD S++ +L+ L+ +
Sbjct: 59 ESDNFLVQNGLENAAGFLRTQLLHRLK-LRVIPQLHFIYDESIERGVRLSQLI-DEAVAS 116
Query: 125 A 125
Sbjct: 117 D 117
>gi|253995585|ref|YP_003047649.1| ribosome-binding factor A [Methylotenera mobilis JLW8]
gi|253982264|gb|ACT47122.1| ribosome-binding factor A [Methylotenera mobilis JLW8]
Length = 118
Score = 120 bits (303), Expect = 5e-26, Method: Composition-based stats.
Identities = 26/112 (23%), Positives = 58/112 (51%), Gaps = 6/112 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K+ R+ RV E+++ + +++ E +D + +I+++ V ++ D+ A ++ S
Sbjct: 2 AKDFSRSHRVAEQMQREIADLLMF-EIKDPRVG--MITVTAVEVTGDMAHAKIFYSAA-- 56
Query: 66 VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
D L + F+R ++ + + LR VP+L F YD S+ + ++ L+
Sbjct: 57 KQSDSTQQGLEKSAGFLRTQLAKRM-LLRTVPQLHFVYDASIDNGMMMSKLI 107
>gi|124024303|ref|YP_001018610.1| ribosome-binding factor A [Prochlorococcus marinus str. MIT 9303]
gi|166219388|sp|A2CCY5|RBFA_PROM3 RecName: Full=Ribosome-binding factor A
gi|123964589|gb|ABM79345.1| Ribosome-binding factor A [Prochlorococcus marinus str. MIT 9303]
Length = 142
Score = 120 bits (303), Expect = 5e-26, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 55/119 (46%), Gaps = 3/119 (2%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV- 66
RR RV +R ++++ +D + + ++SI+ V +S DL+ +++S+ +
Sbjct: 3 PGRRVERVAALIRRETSELLIHG-IRDERVHQGMVSITNVEVSGDLQHCKIFVSIYGEEI 61
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
V+ L F+RG +GR L +R PE+ F D ++ + L+ +
Sbjct: 62 QRSEVLEGLEAASGFLRGELGRRL-QMRRAPEVHFHLDRGIEKGTSVLNLLEQLEQQRE 119
>gi|67922611|ref|ZP_00516117.1| Ribosome-binding factor A [Crocosphaera watsonii WH 8501]
gi|67855539|gb|EAM50792.1| Ribosome-binding factor A [Crocosphaera watsonii WH 8501]
Length = 147
Score = 120 bits (303), Expect = 5e-26, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 57/117 (48%), Gaps = 3/117 (2%)
Query: 2 KNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS 61
K N NSRR RV ++ + ++L + +D + ++S++ V +S DL+ A +++S
Sbjct: 15 KGANMANSRRVSRVSSLIKREISQMLLF-DIKDDRVGSGMVSVTNVYVSGDLQHAKIFVS 73
Query: 62 LPLDVSPD-RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ + L + ++R + +R LR PE+ F D ++ K+ L+
Sbjct: 74 IYGTEEAKIETMEGLKSSEGYVRKELAHRIR-LRRAPEVTFFEDHGIERGDKMLHLL 129
>gi|226940846|ref|YP_002795920.1| ribosome-binding factor A [Laribacter hongkongensis HLHK9]
gi|226715773|gb|ACO74911.1| RbfA [Laribacter hongkongensis HLHK9]
Length = 129
Score = 120 bits (303), Expect = 6e-26, Method: Composition-based stats.
Identities = 33/127 (25%), Positives = 58/127 (45%), Gaps = 9/127 (7%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
K RA RV ++++ L +I E +D I I+++ V ++ D A V+ ++
Sbjct: 5 KGFSRADRVADQIQRDLAELI-RVELKDPRIG--FITLTGVEVTRDYSHAKVFYTVLNSE 61
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM-----CLPK 121
S L ++R I R +R L VPEL F YD S++ ++ L+ +
Sbjct: 62 DLSETQSTLERASGWLRSEIARGIR-LFTVPELHFVYDESVERGMYMDRLLDQVAEADAQ 120
Query: 122 IPVALEK 128
+P +K
Sbjct: 121 LPRDDDK 127
>gi|218438840|ref|YP_002377169.1| ribosome-binding factor A [Cyanothece sp. PCC 7424]
gi|226736641|sp|B7KDJ9|RBFA_CYAP7 RecName: Full=Ribosome-binding factor A
gi|218171568|gb|ACK70301.1| ribosome-binding factor A [Cyanothece sp. PCC 7424]
Length = 131
Score = 120 bits (303), Expect = 6e-26, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 62/119 (52%), Gaps = 3/119 (2%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-DVSP 68
RR RV ++ + ++L+ +D + ++SI++V +S DL+ A +++S+ + +
Sbjct: 5 RRVSRVSSLIKREVSQMLLHG-IKDDRVGAGMVSITDVDVSGDLQHAKIFVSIYGTEQAK 63
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALE 127
+ L ++ F+R +G+ +R LR PE+ F DTSL+ + L+ + E
Sbjct: 64 AETMEGLKSSVGFVRRELGQRIR-LRRTPEVVFLEDTSLERGDRTLHLLNQLQDARKEE 121
>gi|126730446|ref|ZP_01746257.1| ribosome-binding factor A [Sagittula stellata E-37]
gi|126709179|gb|EBA08234.1| ribosome-binding factor A [Sagittula stellata E-37]
Length = 113
Score = 120 bits (303), Expect = 6e-26, Method: Composition-based stats.
Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 1/113 (0%)
Query: 15 VGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISA 74
+ E +R L V++ + D ++R I++ EV +S DL+VAT Y+ D + +
Sbjct: 1 MSEVIRRQLSDVLMRGDVHDPELNRLSITVGEVRVSPDLKVATAYVVPLGGQKADDMFAL 60
Query: 75 LNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALE 127
L+ N +R + + L L++ PELRFR D + + + L + +E
Sbjct: 61 LDRNKGELRRAVSKGL-TLKFAPELRFRLDETFDNLDEARRLFSDDTVRRDVE 112
>gi|113969371|ref|YP_733164.1| ribosome-binding factor A [Shewanella sp. MR-4]
gi|122944045|sp|Q0HLG0|RBFA_SHESM RecName: Full=Ribosome-binding factor A
gi|113884055|gb|ABI38107.1| ribosome-binding factor A [Shewanella sp. MR-4]
Length = 146
Score = 120 bits (302), Expect = 6e-26, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 61/116 (52%), Gaps = 6/116 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K R R+G++++ L V+L + +D I +++++V +S DL A V+++ +
Sbjct: 2 AKEFSRTRRIGQQLQQELA-VVLQRDMKDPRIG--FVTVNDVDVSRDLSYAKVFVTFFEE 58
Query: 66 VSP--DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
++AL +IR + ++ LR +PE+RF YD+SL +++ L+
Sbjct: 59 DKEVVQEKLNALIAAAPYIRTLVAGRMK-LRVMPEIRFVYDSSLVEGMRMSNLVSQ 113
>gi|152995059|ref|YP_001339894.1| ribosome-binding factor A [Marinomonas sp. MWYL1]
gi|189039546|sp|A6VU30|RBFA_MARMS RecName: Full=Ribosome-binding factor A
gi|150835983|gb|ABR69959.1| ribosome-binding factor A [Marinomonas sp. MWYL1]
Length = 129
Score = 120 bits (302), Expect = 6e-26, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 63/116 (54%), Gaps = 8/116 (6%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
R R+G++++ L +I E +D + +++++EV ++ DL A +Y ++
Sbjct: 2 AGEFSRTSRIGDQLQKELASLI-QFEVKDPRLG--LVTVNEVRVAKDLGYADIYYTVLGK 58
Query: 66 VSPDRVI----SALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
V+ +AL+ F+R R+ + ++ LR +P LRF YD S+ + +++AL+
Sbjct: 59 DDQPEVLAENQAALDSAKGFLRRRLAQEVK-LRVMPHLRFHYDQSVVNGSRMSALI 113
>gi|255658257|ref|ZP_05403666.1| ribosome-binding factor A [Mitsuokella multacida DSM 20544]
gi|260849568|gb|EEX69575.1| ribosome-binding factor A [Mitsuokella multacida DSM 20544]
Length = 131
Score = 120 bits (302), Expect = 7e-26, Method: Composition-based stats.
Identities = 33/108 (30%), Positives = 54/108 (50%), Gaps = 5/108 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP-D 69
R +V E ++ + +IL E +D I ++++ V + DLR A +Y+SL
Sbjct: 5 RVEKVQELMKQEISEIILR-ELKDPRIG--FVTVTSVECTGDLREAKIYVSLMGSEQQVK 61
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ L ++ FIR IG+ +R LR+ PEL F D SL + L+
Sbjct: 62 DCWAGLQSSLGFIRREIGKRIR-LRFTPELSFVVDKSLDYSAHIQELL 108
>gi|91762478|ref|ZP_01264443.1| Ribosome-binding factor A [Candidatus Pelagibacter ubique HTCC1002]
gi|91718280|gb|EAS84930.1| Ribosome-binding factor A [Candidatus Pelagibacter ubique HTCC1002]
Length = 122
Score = 120 bits (302), Expect = 7e-26, Method: Composition-based stats.
Identities = 32/111 (28%), Positives = 57/111 (51%), Gaps = 1/111 (0%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
S+R LRVGE +R +L + NE + + + I+++EV MS DL++A Y+
Sbjct: 10 SQRQLRVGEMIRQSLGMIFARNEAKVPNLETNTITVTEVKMSQDLKIAKAYVLPLGGKDS 69
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ VI L IR + + + ++Y+P++ F D S + K+ L+
Sbjct: 70 ELVIKKLKEYSFLIRKALSKKI-IMKYLPKILFAKDDSFEYAEKIENLIKQ 119
>gi|114046598|ref|YP_737148.1| ribosome-binding factor A [Shewanella sp. MR-7]
gi|123326767|sp|Q0HXR4|RBFA_SHESR RecName: Full=Ribosome-binding factor A
gi|113888040|gb|ABI42091.1| ribosome-binding factor A [Shewanella sp. MR-7]
Length = 146
Score = 120 bits (302), Expect = 7e-26, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 61/116 (52%), Gaps = 6/116 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K R R+G++++ L V+L + +D I +++++V +S DL A V+++ +
Sbjct: 2 AKEFSRTRRIGQQLQQELA-VVLQRDMKDPRIG--FVTVNDVDVSRDLSYAKVFVTFFEE 58
Query: 66 VSP--DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
++AL +IR + ++ LR +PE+RF YD+SL +++ L+
Sbjct: 59 DKEVVQEKLNALIAAAPYIRTLVAGRMK-LRVMPEIRFVYDSSLVEGMRMSNLVSQ 113
>gi|282880568|ref|ZP_06289275.1| ribosome-binding factor A [Prevotella timonensis CRIS 5C-B1]
gi|281305671|gb|EFA97724.1| ribosome-binding factor A [Prevotella timonensis CRIS 5C-B1]
Length = 111
Score = 120 bits (302), Expect = 7e-26, Method: Composition-based stats.
Identities = 34/108 (31%), Positives = 55/108 (50%), Gaps = 4/108 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
R R+ ++ L + + Q R ++S++ V +S DL V T Y+S+ D
Sbjct: 5 RQNRIARLLQKELAIIFQS---QTRATHGVMVSVTRVRVSPDLSVCTAYLSIFPSEKGDE 61
Query: 71 VISALNCNIKFIRGRIGRSLRN-LRYVPELRFRYDTSLQSYWKLNALM 117
++ +N N K IR +G +RN LR +PELRF D SL ++ L+
Sbjct: 62 ILENINKNNKSIRYELGSRMRNQLRIIPELRFFIDDSLDYIEHIDELL 109
>gi|86605483|ref|YP_474246.1| ribosome-binding factor A [Synechococcus sp. JA-3-3Ab]
gi|123507268|sp|Q2JW85|RBFA_SYNJA RecName: Full=Ribosome-binding factor A
gi|86554025|gb|ABC98983.1| ribosome-binding factor A [Synechococcus sp. JA-3-3Ab]
Length = 149
Score = 120 bits (302), Expect = 7e-26, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 64/120 (53%), Gaps = 3/120 (2%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV-SP 68
RR RV E ++ + ++L +E +D + ++SI +V +S DL+ A +++S+ D +
Sbjct: 5 RRVARVAELIKREVSQILL-SEIKDDRVGAGMVSIVDVEVSNDLQNARIFVSIYGDEAAQ 63
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALEK 128
+ + L F+R IG+ L LR VP + F D SL+ ++ AL+ + P ++
Sbjct: 64 QQTMEGLASATPFVRREIGQRL-GLRRVPTVVFLQDRSLERGSRVLALLNQLRQPAEAQQ 122
>gi|225023302|ref|ZP_03712494.1| hypothetical protein EIKCOROL_00155 [Eikenella corrodens ATCC
23834]
gi|224943947|gb|EEG25156.1| hypothetical protein EIKCOROL_00155 [Eikenella corrodens ATCC
23834]
Length = 123
Score = 120 bits (302), Expect = 7e-26, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 54/116 (46%), Gaps = 4/116 (3%)
Query: 4 KNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP 63
K + R RV E++ L ++ +D I+I+EV ++ D ATVY ++
Sbjct: 3 KTHRGYARQDRVREQIMRELAE-LVRTGLKDPR--AGFITINEVELTRDYSHATVYYTVL 59
Query: 64 LDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
D + + AL +R + R ++ + PEL F+YD SL+ ++ L+
Sbjct: 60 DDATREITAEALEHAKGHLRSELSRRIKLFK-TPELHFKYDQSLERGMSISQLIEQ 114
>gi|260435606|ref|ZP_05789576.1| ribosome-binding factor A [Synechococcus sp. WH 8109]
gi|260413480|gb|EEX06776.1| ribosome-binding factor A [Synechococcus sp. WH 8109]
Length = 140
Score = 120 bits (301), Expect = 8e-26, Method: Composition-based stats.
Identities = 31/115 (26%), Positives = 60/115 (52%), Gaps = 3/115 (2%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD-V 66
RR RV +R + +++N +D + + ++SI+EV +S DL+ +++S+ +
Sbjct: 3 QGRRVERVAALIRKEVSQLMING-IRDERVHQGMVSITEVEVSGDLQHCKIFVSVFGEAQ 61
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
D+V+ L F+RG +GR L +R PE+ F+ D L+ + L+ +
Sbjct: 62 ERDQVLEGLEAASGFLRGELGRRL-QMRRAPEVVFQLDRGLERGTSVLGLLNRLE 115
>gi|315652144|ref|ZP_07905142.1| ribosome-binding factor A [Eubacterium saburreum DSM 3986]
gi|315485636|gb|EFU76020.1| ribosome-binding factor A [Eubacterium saburreum DSM 3986]
Length = 123
Score = 120 bits (301), Expect = 8e-26, Method: Composition-based stats.
Identities = 34/112 (30%), Positives = 59/112 (52%), Gaps = 4/112 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
KNS ++ + EV + +I E +D ++ S+++ ++ DL+ AT+Y+S+ D
Sbjct: 3 KNSLKSTMINSEVMKTVSEII-RGEVKDPRVAPVT-SVTDAEVTTDLKYATIYVSVLGDD 60
Query: 67 SP-DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ + L + FIR + R L NLR PEL+F D SL K++ L+
Sbjct: 61 EQSKKTLLGLKSSAGFIRKELARRL-NLRNTPELKFVLDESLAYGMKMDKLI 111
>gi|39996689|ref|NP_952640.1| ribosome-binding factor A [Geobacter sulfurreducens PCA]
gi|61215118|sp|Q74CT2|RBFA_GEOSL RecName: Full=Ribosome-binding factor A
gi|39983570|gb|AAR34963.1| ribosome-binding factor A [Geobacter sulfurreducens PCA]
gi|298505700|gb|ADI84423.1| ribosome-binding factor A [Geobacter sulfurreducens KN400]
Length = 118
Score = 120 bits (301), Expect = 8e-26, Method: Composition-based stats.
Identities = 31/114 (27%), Positives = 58/114 (50%), Gaps = 5/114 (4%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
R+ +V E + + +I+ +D I I+I+ V ++ D+R AT+Y ++ D
Sbjct: 2 FNRSEKVAEAIHELVSGLIVKG-MKDPRIG--FITITGVKVTDDIRQATIYYTVMGDDEA 58
Query: 69 D-RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
L F+R IG+ LR L++ PEL F+YD S++ +++ L+ +
Sbjct: 59 RVSTARGLASATGFLRREIGKQLR-LKFAPELHFKYDQSIEYGNRIDQLLKEIE 111
>gi|115372769|ref|ZP_01460075.1| ribosome-binding factor A [Stigmatella aurantiaca DW4/3-1]
gi|310823418|ref|YP_003955776.1| ribosome-binding factor a [Stigmatella aurantiaca DW4/3-1]
gi|3914548|sp|O05340|RBFA_STIAU RecName: Full=Ribosome-binding factor A
gi|1934985|emb|CAA61164.1| ribosome binding factor A [Stigmatella aurantiaca]
gi|115370250|gb|EAU69179.1| ribosome-binding factor A [Stigmatella aurantiaca DW4/3-1]
gi|309396490|gb|ADO73949.1| Ribosome-binding factor A [Stigmatella aurantiaca DW4/3-1]
Length = 119
Score = 120 bits (301), Expect = 8e-26, Method: Composition-based stats.
Identities = 33/110 (30%), Positives = 57/110 (51%), Gaps = 4/110 (3%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-DVSP 68
R RVG+E+++A+ ++ E +D I I+I+ V +S DLRVA V+ S+
Sbjct: 5 SRPERVGQEIQAAIGQLLTRGELRDPRIG--FITITGVKVSPDLRVAQVFYSMMGTAQER 62
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
L+ F+R + ++ NLR PE+ F +D S+ K++ L+
Sbjct: 63 AETQKGLDAAKGFVRREVTAAV-NLRVSPEVFFTFDESVGEGDKIDRLLR 111
>gi|90412486|ref|ZP_01220489.1| putative ribosome-binding factor A [Photobacterium profundum 3TCK]
gi|90326523|gb|EAS42929.1| putative ribosome-binding factor A [Photobacterium profundum 3TCK]
Length = 134
Score = 120 bits (301), Expect = 8e-26, Method: Composition-based stats.
Identities = 33/125 (26%), Positives = 61/125 (48%), Gaps = 7/125 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP-- 63
K R RV ++++ L VIL E +D + + +IS V +S D+ A V+++
Sbjct: 2 AKEFSRTQRVAQQLQKELA-VILQRELKDPRVG--MTTISSVEVSRDMCYAKVFVTFFTI 58
Query: 64 LDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIP 123
+ + ++ L +IR +G+ +R LR PEL F +D SL +++ L+ +
Sbjct: 59 GEQTAKGSLAVLREMAPYIRSLLGKQIR-LRVTPELTFIFDESLTEGMRISNLVSN-AVR 116
Query: 124 VALEK 128
E+
Sbjct: 117 DDEER 121
>gi|146283629|ref|YP_001173782.1| ribosome-binding factor A [Pseudomonas stutzeri A1501]
gi|166219395|sp|A4VPN9|RBFA_PSEU5 RecName: Full=Ribosome-binding factor A
gi|145571834|gb|ABP80940.1| ribosome-binding factor A [Pseudomonas stutzeri A1501]
gi|327482024|gb|AEA85334.1| ribosome-binding factor A [Pseudomonas stutzeri DSM 4166]
Length = 129
Score = 120 bits (301), Expect = 9e-26, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 64/118 (54%), Gaps = 8/118 (6%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K R R+G++++ L +++ E +D + +I+I+ V +S DL A ++I++
Sbjct: 2 AKEFSRTQRIGDQMQRELA-LLIQREIKDPRLG--LITITAVDVSRDLSHAKIFITIMGQ 58
Query: 66 VSPDRVISA----LNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
I LN F+R ++G+S++ LR VP+L F YD S++ +L++L+
Sbjct: 59 DDDQEAIKGNLRILNDAAGFLRMQLGKSMK-LRTVPQLHFNYDASIRRGVELSSLIER 115
>gi|241760044|ref|ZP_04758142.1| ribosome-binding factor A [Neisseria flavescens SK114]
gi|261364591|ref|ZP_05977474.1| ribosome-binding factor A [Neisseria mucosa ATCC 25996]
gi|261381125|ref|ZP_05985698.1| ribosome-binding factor A [Neisseria subflava NJ9703]
gi|319637963|ref|ZP_07992729.1| ribosome-binding factor A [Neisseria mucosa C102]
gi|241319498|gb|EER55928.1| ribosome-binding factor A [Neisseria flavescens SK114]
gi|284795927|gb|EFC51274.1| ribosome-binding factor A [Neisseria subflava NJ9703]
gi|288567175|gb|EFC88735.1| ribosome-binding factor A [Neisseria mucosa ATCC 25996]
gi|317401118|gb|EFV81773.1| ribosome-binding factor A [Neisseria mucosa C102]
Length = 123
Score = 120 bits (301), Expect = 9e-26, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 4/117 (3%)
Query: 3 NKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL 62
K + R RV E++ L ++ +D I+I+EV ++ D ATV+ ++
Sbjct: 2 RKPQRGYARQDRVKEQIMRELAE-LVRTGLKDPR--AGFITINEVEVTRDYSHATVFYTV 58
Query: 63 PLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
D + D AL +R + + ++ + PEL F+YD SL+ +++L+
Sbjct: 59 LDDSTRDITEEALEHAKGHLRSELAKRIKLFK-TPELHFKYDESLERGMSISSLIDQ 114
>gi|254447065|ref|ZP_05060532.1| ribosome-binding factor A [gamma proteobacterium HTCC5015]
gi|198263204|gb|EDY87482.1| ribosome-binding factor A [gamma proteobacterium HTCC5015]
Length = 142
Score = 120 bits (301), Expect = 9e-26, Method: Composition-based stats.
Identities = 35/123 (28%), Positives = 65/123 (52%), Gaps = 5/123 (4%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K+ R+ RV ++++ L +I E +D +S +++ EV ++ DL A +YI+ LD
Sbjct: 15 AKDYPRSYRVADQIQKDLANLI-RTEVKDPRLSD-FVTLEEVRVTRDLSQAKIYITT-LD 71
Query: 66 VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
+ + LN F+RG +G+ LR LR +P+L F YD + + +++ L+ I
Sbjct: 72 DKAEDSAAVLNRASGFLRGVLGKRLR-LRVIPQLHFIYDATQEEAQRIDGLIRE-AIASD 129
Query: 126 LEK 128
+
Sbjct: 130 EQH 132
>gi|209694191|ref|YP_002262119.1| ribosome-binding factor A [Aliivibrio salmonicida LFI1238]
gi|226723591|sp|B6ENE3|RBFA_ALISL RecName: Full=Ribosome-binding factor A
gi|208008142|emb|CAQ78284.1| ribosome-binding factor A [Aliivibrio salmonicida LFI1238]
Length = 135
Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats.
Identities = 35/116 (30%), Positives = 65/116 (56%), Gaps = 6/116 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP-- 63
K RA RV ++++ L VIL E +D I +++IS+V +S DL A V+++
Sbjct: 2 SKEFSRAQRVSQQLQKELA-VILQREVRDSRIG--MVTISDVEVSRDLAYAKVFVTFFCV 58
Query: 64 LDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ +P+ ++AL + +R +G+ +R+ R PE+RF YD +L +++ L+
Sbjct: 59 GEQTPETCLAALKEHEVPVRMMLGKRIRH-RLTPEVRFTYDNTLVEGMRMSNLVSD 113
>gi|104780029|ref|YP_606527.1| ribosome-binding factor A [Pseudomonas entomophila L48]
gi|166219392|sp|Q1IF42|RBFA_PSEE4 RecName: Full=Ribosome-binding factor A
gi|95109016|emb|CAK13712.1| ribosome-binding factor A [Pseudomonas entomophila L48]
Length = 132
Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 59/117 (50%), Gaps = 7/117 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K R R+G++++ L +I E +D + +++I+ V +S DL A V+I++
Sbjct: 2 AKEYSRTQRIGDQMQRELAELI-RREVKDPRVG--LVTITAVDVSRDLGHAKVFITVMGQ 58
Query: 66 VSPD---RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
D + + AL F+R +G + LR VP+L F +D S+ L+AL+
Sbjct: 59 DGTDAVPQTLKALTSAASFLRLHLG-RVMQLRSVPQLHFHFDESVSRGVHLSALIER 114
>gi|163802305|ref|ZP_02196199.1| ribosome-binding factor A [Vibrio sp. AND4]
gi|159173834|gb|EDP58648.1| ribosome-binding factor A [Vibrio sp. AND4]
Length = 135
Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats.
Identities = 34/115 (29%), Positives = 63/115 (54%), Gaps = 6/115 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP-- 63
K R RV ++++ L +IL E +D + +++IS+V S DL A V+++
Sbjct: 2 SKEFSRTQRVSQQLQKELA-MILQREVRDSRLG--MVTISDVEASRDLAYAKVFVTFLCV 58
Query: 64 LDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ +P+ ++AL + IR +G+ +R LR PE+RF YD +L +++ L+
Sbjct: 59 GEQTPESCLAALREHEVHIRMMLGKRIR-LRLTPEIRFYYDNTLVEGMRMSNLVS 112
>gi|88860549|ref|ZP_01135187.1| ribosome-binding factor A, role in processing of 16S rRNA
[Pseudoalteromonas tunicata D2]
gi|88817747|gb|EAR27564.1| ribosome-binding factor A, role in processing of 16S rRNA
[Pseudoalteromonas tunicata D2]
Length = 132
Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats.
Identities = 32/114 (28%), Positives = 59/114 (51%), Gaps = 7/114 (6%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
++ R RVG++++ + VIL E +D + + ++S V +S DL A +++++
Sbjct: 2 RDFSRTDRVGQQIQKEIA-VILQREIKDPRLG--MATVSAVEVSRDLAYAKIFVTILNTQ 58
Query: 67 SPD---RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
D I+ LN FIR +G+ +R R +P L+F D SL ++ L+
Sbjct: 59 DEDKSNESIAILNEATGFIRSLLGKRIRA-RIMPNLKFVLDRSLLEGMHMSNLV 111
>gi|117919480|ref|YP_868672.1| ribosome-binding factor A [Shewanella sp. ANA-3]
gi|166219406|sp|A0KTZ7|RBFA_SHESA RecName: Full=Ribosome-binding factor A
gi|117611812|gb|ABK47266.1| ribosome-binding factor A [Shewanella sp. ANA-3]
Length = 146
Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 60/116 (51%), Gaps = 6/116 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K R R+ ++++ L V+L + +D I +++++V +S DL A V+++ +
Sbjct: 2 AKEFSRTRRIAQQLQQELA-VVLQRDMKDPRIG--FVTVNDVDVSRDLSYAKVFVTFFEE 58
Query: 66 VSP--DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
++AL +IR + ++ LR +PE+RF YD+SL +++ L+
Sbjct: 59 DKELVQEKLNALITAAPYIRTLVAGRMK-LRVMPEIRFVYDSSLVEGMRMSNLVSQ 113
>gi|172057845|ref|YP_001814305.1| ribosome-binding factor A [Exiguobacterium sibiricum 255-15]
gi|171990366|gb|ACB61288.1| ribosome-binding factor A [Exiguobacterium sibiricum 255-15]
Length = 113
Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats.
Identities = 31/112 (27%), Positives = 60/112 (53%), Gaps = 5/112 (4%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS- 67
S R+ RV E+VR + +++ + D + ++++ V ++ DL+ AT++ S+ D +
Sbjct: 2 SVRSNRVAEQVRKEITQMLIK-DVNDPRVKA--VTVTGVEVTGDLQQATIFYSVLGDETV 58
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ L + F+R IG +R LR PEL F DTS++ +++ L+
Sbjct: 59 REEARVGLEKSKGFMRKEIGSRIR-LRKTPELLFEIDTSVEYGSRIDELLRN 109
>gi|254411561|ref|ZP_05025337.1| ribosome-binding factor A [Microcoleus chthonoplastes PCC 7420]
gi|196181283|gb|EDX76271.1| ribosome-binding factor A [Microcoleus chthonoplastes PCC 7420]
Length = 132
Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats.
Identities = 28/113 (24%), Positives = 60/113 (53%), Gaps = 3/113 (2%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-DV 66
+RR RV ++ + ++L ++ +D + ++S+++V +S DL+ A +Y+S+ +
Sbjct: 3 TNRRVSRVSSLIQQEVSQMLL-HDIKDDRVGAGMVSVTDVDVSGDLQHAKIYVSIYGTEE 61
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ ++ L F+R +GR +R LR PE+ F D L+ ++ L+
Sbjct: 62 AKSETMAGLQSATGFVRRELGRRVR-LRRTPEVVFIEDRGLERGARMLTLLNQ 113
>gi|148976706|ref|ZP_01813393.1| ribosome-binding factor A [Vibrionales bacterium SWAT-3]
gi|145964057|gb|EDK29315.1| ribosome-binding factor A [Vibrionales bacterium SWAT-3]
Length = 137
Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats.
Identities = 34/115 (29%), Positives = 64/115 (55%), Gaps = 6/115 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP-- 63
K R RV ++++ L +IL E +D I +++IS+V +S DL A V+++
Sbjct: 2 SKEFSRTQRVSQQLQKELA-LILQREVRDSRIG--MVTISDVEVSRDLAYAKVFVTFLCI 58
Query: 64 LDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ +P+ ++AL + IR +G+ +R+ R PE+RF YD +L +++ L+
Sbjct: 59 GEQTPESCLAALKEHEVPIRMALGKRIRH-RLTPEVRFTYDNTLVEGMRMSNLVS 112
>gi|281421510|ref|ZP_06252509.1| ribosome-binding factor A [Prevotella copri DSM 18205]
gi|281404582|gb|EFB35262.1| ribosome-binding factor A [Prevotella copri DSM 18205]
Length = 111
Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats.
Identities = 32/108 (29%), Positives = 59/108 (54%), Gaps = 4/108 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
R R+ ++ L + + Q R++ ++S+++V +S DL + T Y+S+ +
Sbjct: 5 RQNRISRLLQKELSLIFQS---QTRMMHGVMVSVTKVRVSPDLSICTAYLSVFPSEKGEE 61
Query: 71 VISALNCNIKFIRGRIGRSLRN-LRYVPELRFRYDTSLQSYWKLNALM 117
++ +N N K IR +G+ +RN LR +PELRF D SL ++ L+
Sbjct: 62 ILKNINANEKTIRFDLGKKVRNQLRIIPELRFFLDDSLDYLEHIDELL 109
>gi|114562169|ref|YP_749682.1| ribosome-binding factor A [Shewanella frigidimarina NCIMB 400]
gi|122300516|sp|Q086H1|RBFA_SHEFN RecName: Full=Ribosome-binding factor A
gi|114333462|gb|ABI70844.1| ribosome-binding factor A [Shewanella frigidimarina NCIMB 400]
Length = 143
Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 60/116 (51%), Gaps = 6/116 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K R R+ ++++ L V+ + +D I +++++V +S DL A VY++ +
Sbjct: 2 AKEFSRTRRIAQQLQQELAMVLQR-DMKDPRIG--FVTVNDVDVSRDLSYAKVYVTFFEE 58
Query: 66 VSP--DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ + I AL ++R + ++ LR +PELRF YD+SL +++ L+
Sbjct: 59 DTELVQQKIDALTVAAPYVRTLVAGRMK-LRVMPELRFIYDSSLVEGMRMSNLVTQ 113
>gi|297537317|ref|YP_003673086.1| ribosome-binding factor A [Methylotenera sp. 301]
gi|297256664|gb|ADI28509.1| ribosome-binding factor A [Methylotenera sp. 301]
Length = 124
Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 59/112 (52%), Gaps = 6/112 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K+ R+ RV E+++ L +L E +D + +++I+ V ++ D+ A ++ S
Sbjct: 2 AKDFSRSHRVAEQMQRELAD-LLQFEVKDPRVK--MVTITAVEVTGDMAHAKIFYS--AS 56
Query: 66 VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ D + L + F+R ++ + + LR VP+L F YD S+ + ++ L+
Sbjct: 57 KASDSLQQGLEKSAGFLRTQVAKRM-LLRTVPQLHFVYDASIDNGMMMSKLI 107
>gi|153954057|ref|YP_001394822.1| ribosome-binding factor A [Clostridium kluyveri DSM 555]
gi|219854670|ref|YP_002471792.1| hypothetical protein CKR_1327 [Clostridium kluyveri NBRC 12016]
gi|189039534|sp|A5N843|RBFA_CLOK5 RecName: Full=Ribosome-binding factor A
gi|254789743|sp|B9E1K3|RBFA_CLOK1 RecName: Full=Ribosome-binding factor A
gi|146346938|gb|EDK33474.1| Ribosome-binding factor A [Clostridium kluyveri DSM 555]
gi|219568394|dbj|BAH06378.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 121
Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats.
Identities = 30/112 (26%), Positives = 60/112 (53%), Gaps = 4/112 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-DVSPD 69
R+ R+ EE++ + +I N+ +D +S ++S+++V ++ D + A V++S+ D S D
Sbjct: 5 RSGRINEEMKREISNII-RNDMKDPRLSA-MVSVTKVDVTKDQKYAKVFVSIYGEDKSKD 62
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
L + FIR +G ++ LR PE+ D +++ +N L+ K
Sbjct: 63 DTFQVLKSSESFIRREVGHRVK-LRNTPEIIIEMDNTIEYGMHINELLHKIK 113
>gi|298368699|ref|ZP_06980017.1| ribosome-binding factor A [Neisseria sp. oral taxon 014 str. F0314]
gi|298282702|gb|EFI24189.1| ribosome-binding factor A [Neisseria sp. oral taxon 014 str. F0314]
Length = 123
Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 4/117 (3%)
Query: 3 NKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL 62
K + R RV E++ L ++ +D I+I+EV ++ D ATV+ ++
Sbjct: 2 RKPQRGYARQDRVKEQIMRELAE-LVRTGLKDPR--AGFITINEVEVTRDYSHATVFYTV 58
Query: 63 PLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
D + D AL +R + + ++ + PEL F+YD SL+ +++L+
Sbjct: 59 LDDSTRDITEEALEHAKGHLRSELAKRIKLFK-TPELHFKYDESLERGMSISSLIDQ 114
>gi|255038621|ref|YP_003089242.1| ribosome-binding factor A [Dyadobacter fermentans DSM 18053]
gi|254951377|gb|ACT96077.1| ribosome-binding factor A [Dyadobacter fermentans DSM 18053]
Length = 127
Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 59/120 (49%), Gaps = 3/120 (2%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
S+R +VG +++ L + + L ++I+ V ++ DL +A Y+S D
Sbjct: 1 MESKRQQKVGRQIQKDLGEIFQKDAQH--LTHGSFVTITAVRVTPDLSIARAYLSFLPDK 58
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRN-LRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
+ ++ + N +FIR ++ +R+ LR VP L+F D + + K++ L IP A
Sbjct: 59 NKTMLLETIRENTRFIRQKLAERVRHQLRIVPHLQFYIDDTAEYAAKMDQLFADLVIPPA 118
>gi|167630360|ref|YP_001680859.1| ribosome-binding factor a [Heliobacterium modesticaldum Ice1]
gi|238687990|sp|B0THR5|RBFA_HELMI RecName: Full=Ribosome-binding factor A
gi|167593100|gb|ABZ84848.1| ribosome-binding factor a [Heliobacterium modesticaldum Ice1]
Length = 121
Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats.
Identities = 39/119 (32%), Positives = 62/119 (52%), Gaps = 5/119 (4%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS-P 68
R R+ EE++ L +L +E +D + +SI+ V +S D R A VY+S+ D S
Sbjct: 4 HRMARMAEEIKRELAR-LLRDEMKDPRLG--FVSITAVEVSGDGRHAKVYVSVMGDESAR 60
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALE 127
D +AL F+R + +SLR +RYVPEL F D S++ ++ L+ + E
Sbjct: 61 DNSQAALKQATGFLRTELSKSLR-VRYVPELVFLSDLSIERGTRIARLLTEMENHDDAE 118
>gi|30248766|ref|NP_840836.1| ribosome-binding factor A [Nitrosomonas europaea ATCC 19718]
gi|34098452|sp|Q82WC9|RBFA_NITEU RecName: Full=Ribosome-binding factor A
gi|30180361|emb|CAD84673.1| Ribosome-binding factor A [Nitrosomonas europaea ATCC 19718]
Length = 117
Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats.
Identities = 30/113 (26%), Positives = 61/113 (53%), Gaps = 5/113 (4%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI-SLPL 64
++ R +RV ++++ L +++ NE D + +++++ V ++ D A V+ +L
Sbjct: 2 SRDFSRTVRVADQIQRELA-LLIQNEIMDPRVG--MVTLTGVEVTRDYAYAKVFYTTLGG 58
Query: 65 DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
D + V L F+R ++ +R LR VP+L+F YD S++ KL+ L+
Sbjct: 59 DENIQLVEEGLKHAAGFLRSQLAGKIR-LRVVPQLQFVYDESVERGMKLSRLI 110
>gi|255284462|ref|ZP_05349017.1| ribosome-binding factor A [Bryantella formatexigens DSM 14469]
gi|255265007|gb|EET58212.1| ribosome-binding factor A [Bryantella formatexigens DSM 14469]
Length = 130
Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats.
Identities = 35/123 (28%), Positives = 63/123 (51%), Gaps = 4/123 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
KNS + RV EV+ L +I +E +D I + S+ V ++ DL+ YIS+ D
Sbjct: 3 KNSIKNTRVNSEVQRELAGII-RSEIKDPRIHP-LTSVVLVEVAPDLKTCKAYISVLGDE 60
Query: 67 SPDR-VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
+ + L + FIR ++ +L NLR PE+RF D S++ +++ L+ + +
Sbjct: 61 QAQQSTLEGLRSAVGFIRRQLAHNL-NLRNTPEIRFILDQSIEYGVRMSKLIEENHVEES 119
Query: 126 LEK 128
++
Sbjct: 120 EDE 122
>gi|330721902|gb|EGG99855.1| Ribosome-binding factor A [gamma proteobacterium IMCC2047]
Length = 130
Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats.
Identities = 35/115 (30%), Positives = 65/115 (56%), Gaps = 7/115 (6%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS 67
+S R RV ++++ L +I E +D + ++++S V +S DL A V+I++
Sbjct: 3 DSSRRQRVADQIQKELAGLIQR-EMKDPRLG--MVTVSAVDVSRDLAYADVFITMLGKDD 59
Query: 68 PD---RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ + + L F+RG++ R++R LR VP LRFRYD S++ +L++L+
Sbjct: 60 AEARQQTLDILGRGAGFLRGKLARAMR-LRIVPALRFRYDESIERGARLSSLIED 113
>gi|325981565|ref|YP_004293967.1| ribosome-binding factor A [Nitrosomonas sp. AL212]
gi|325531084|gb|ADZ25805.1| ribosome-binding factor A [Nitrosomonas sp. AL212]
Length = 127
Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 61/121 (50%), Gaps = 6/121 (4%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
PK+ R+LR+ ++++ L +I NE +D I + ++I+ V ++ D A ++ +
Sbjct: 2 PKDFSRSLRIADQIQRELADLI-QNEIKDPRIKQ--LTITAVEVTRDYSHAKIFYTTLTH 58
Query: 66 VSPDRVI-SALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPV 124
+ +I L F+R + ++ LR VP+L F YD S++ +L+ L+ I
Sbjct: 59 QDENFLIEKGLEHATGFLRSNLSHRMK-LRLVPQLHFIYDESVERGVRLSKLI-DEAIAQ 116
Query: 125 A 125
Sbjct: 117 D 117
>gi|220906274|ref|YP_002481585.1| ribosome-binding factor A [Cyanothece sp. PCC 7425]
gi|254789745|sp|B8HWS1|RBFA_CYAP4 RecName: Full=Ribosome-binding factor A
gi|219862885|gb|ACL43224.1| ribosome-binding factor A [Cyanothece sp. PCC 7425]
Length = 134
Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats.
Identities = 26/111 (23%), Positives = 60/111 (54%), Gaps = 3/111 (2%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-DVSP 68
RR RV E ++ + ++++ +D + ++S+++V +S DL+ A +++S+ + +
Sbjct: 5 RRVARVAELIKREISQMLMSG-IKDDRVGSGMVSVTDVDLSGDLQHAKIFVSIYGTEAAR 63
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
++ L ++R +G +R LR PE+ F D SL+ ++ +L+
Sbjct: 64 AETMAGLKAATGYVRSELGHRVR-LRRTPEVVFLEDRSLERGTQVLSLLNR 113
>gi|24372788|ref|NP_716830.1| ribosome-binding factor A [Shewanella oneidensis MR-1]
gi|29427753|sp|Q8EHL4|RBFA_SHEON RecName: Full=Ribosome-binding factor A
gi|24346873|gb|AAN54275.1|AE015564_6 ribosome-binding factor A [Shewanella oneidensis MR-1]
Length = 147
Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 61/116 (52%), Gaps = 6/116 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K R R+G++++ L V+L + +D I +++++V +S DL A V+++ +
Sbjct: 2 AKEFSRTRRIGQQLQQELA-VVLQRDMKDPRIG--FVTVNDVDVSRDLSYAKVFVTFFEE 58
Query: 66 VSP--DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
++AL +IR + ++ LR +PE+RF YD+SL +++ L+
Sbjct: 59 DKDVVQEKLNALIAAAPYIRTLVAGRMK-LRVMPEIRFVYDSSLVEGMRMSNLVSQ 113
>gi|78183922|ref|YP_376357.1| ribosome-binding factor A [Synechococcus sp. CC9902]
gi|123582140|sp|Q3B014|RBFA_SYNS9 RecName: Full=Ribosome-binding factor A
gi|78168216|gb|ABB25313.1| ribosome-binding factor A [Synechococcus sp. CC9902]
Length = 134
Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 58/118 (49%), Gaps = 3/118 (2%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD-V 66
RR RV +R +++N +D + + ++SI+ V ++ DL+ +++S+ +
Sbjct: 3 QGRRVERVAALIRKETSELLING-IRDERVHKGMVSITSVEVAGDLQHCKIFVSIFGEPN 61
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPV 124
+ V+ L F+RG +GR L +R PE++F+ D L+ + L+ +
Sbjct: 62 DQNEVMEGLEAASGFLRGELGRRL-QMRRAPEVKFQLDRGLEKGTSVLGLLNQLEDQR 118
>gi|56460075|ref|YP_155356.1| ribosome-binding factor A [Idiomarina loihiensis L2TR]
gi|61214736|sp|Q5QTY9|RBFA_IDILO RecName: Full=Ribosome-binding factor A
gi|56179085|gb|AAV81807.1| Ribosome-binding factor A [Idiomarina loihiensis L2TR]
Length = 128
Score = 118 bits (298), Expect = 2e-25, Method: Composition-based stats.
Identities = 32/115 (27%), Positives = 61/115 (53%), Gaps = 6/115 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
+ R RV +++ + +IL E +D +S ++++S+V +S DL A V+++ D
Sbjct: 2 AQEFSRTERVRHQLQREIA-MILQREIKDPRVS--MVTVSDVEVSRDLAYAKVFVTFFQD 58
Query: 66 --VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ + LN FIR +G+ ++ R VP+LRF++D SL ++ L+
Sbjct: 59 DPEQTKQALKVLNEASGFIRSLLGKRIKA-RIVPQLRFQHDASLNEGIRMGKLVA 112
>gi|308272449|emb|CBX29053.1| Ribosome-binding factor A [uncultured Desulfobacterium sp.]
Length = 119
Score = 118 bits (298), Expect = 2e-25, Method: Composition-based stats.
Identities = 30/114 (26%), Positives = 52/114 (45%), Gaps = 5/114 (4%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS- 67
RA RVG +++ L +L +D + + +I+ V MS DL++A +Y + +
Sbjct: 4 FSRAERVGGQIQKVLSGALLKG-IKDPRLE--MTTITAVKMSKDLKIARIYFTTTGGKTN 60
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
D F++ + L LRY+PEL F YD S ++ ++ K
Sbjct: 61 ADEAAKGFKSAAGFLKRSLSSEL-TLRYMPELIFFYDESYDYGEQIEKVLKSIK 113
>gi|269103406|ref|ZP_06156103.1| ribosome-binding factor A [Photobacterium damselae subsp. damselae
CIP 102761]
gi|268163304|gb|EEZ41800.1| ribosome-binding factor A [Photobacterium damselae subsp. damselae
CIP 102761]
Length = 133
Score = 118 bits (298), Expect = 2e-25, Method: Composition-based stats.
Identities = 36/124 (29%), Positives = 63/124 (50%), Gaps = 8/124 (6%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP-- 63
K R RV ++++ L VIL E ++ ++ + +IS V +S D+ A VY++
Sbjct: 2 AKEFSRTQRVAQQLQKELA-VILQRELKEPRLA--MTTISSVEVSRDMGYAKVYVTFFAI 58
Query: 64 LDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIP 123
D S + ++ L +IR +G+ +R LR PEL F +D SL +++ L+ K+
Sbjct: 59 GDQSEEESLAILREKAPYIRSLLGKQIR-LRVTPELTFIFDQSLTEGMRISNLVS--KVV 115
Query: 124 VALE 127
E
Sbjct: 116 RDDE 119
>gi|261856062|ref|YP_003263345.1| ribosome-binding factor A [Halothiobacillus neapolitanus c2]
gi|261836531|gb|ACX96298.1| ribosome-binding factor A [Halothiobacillus neapolitanus c2]
Length = 139
Score = 118 bits (298), Expect = 2e-25, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 59/122 (48%), Gaps = 4/122 (3%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
P+ R RV E++R + +L E R ++++++ ++ DL A ++ S+
Sbjct: 2 PQGFSRHQRVAEQIRREIAD-LLREEI--RQAGISLLTVTDCEVTRDLGYAKIFYSVLNS 58
Query: 66 VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
+R + L+ F+R + +R LR VP L F++D S++ +++AL+ +
Sbjct: 59 SERERAQAWLDSAAGFLRTELAHRMR-LRSVPRLTFQFDASIERGMQMDALISAVRKQDD 117
Query: 126 LE 127
Sbjct: 118 EH 119
>gi|260593343|ref|ZP_05858801.1| ribosome-binding factor A [Prevotella veroralis F0319]
gi|260534619|gb|EEX17236.1| ribosome-binding factor A [Prevotella veroralis F0319]
Length = 111
Score = 118 bits (298), Expect = 2e-25, Method: Composition-based stats.
Identities = 32/108 (29%), Positives = 57/108 (52%), Gaps = 4/108 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
R R+ ++ L + Q R++ ++S++ V +S DL + T Y+S+ D
Sbjct: 5 RQNRISRLLQKELASIFQ---TQTRMMHGVLVSVTRVKVSPDLSICTAYLSIFPSEKGDE 61
Query: 71 VISALNCNIKFIRGRIGRSLRN-LRYVPELRFRYDTSLQSYWKLNALM 117
++ +N N K IR +G+ + N LR +PELRF D SL +++ L+
Sbjct: 62 LLKNINANEKTIRYELGQRVHNQLRIIPELRFFIDDSLDYIERIDELL 109
>gi|255017704|ref|ZP_05289830.1| ribosome-binding factor A [Listeria monocytogenes FSL F2-515]
Length = 100
Score = 118 bits (298), Expect = 2e-25, Method: Composition-based stats.
Identities = 33/101 (32%), Positives = 55/101 (54%), Gaps = 5/101 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-DVSPD 69
RA RV E+++ L ++ N + +D + ++++ V ++ DL+ A V+IS+ D +
Sbjct: 4 RANRVSEQMKKELGDIL-NRKIKDPRLG--FVTVTGVDVTGDLQEAKVFISILGTDKEKE 60
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSY 110
+ AL FIR IGR +R LR VPE+ F D S+
Sbjct: 61 NTLLALAKAHGFIRSEIGRRIR-LRKVPEMSFEIDNSIAYG 100
>gi|172039587|ref|YP_001806088.1| ribosome-binding factor A [Cyanothece sp. ATCC 51142]
gi|226723597|sp|B1WW94|RBFA_CYAA5 RecName: Full=Ribosome-binding factor A
gi|171701041|gb|ACB54022.1| ribosome-binding factor A [Cyanothece sp. ATCC 51142]
Length = 129
Score = 118 bits (298), Expect = 2e-25, Method: Composition-based stats.
Identities = 27/112 (24%), Positives = 58/112 (51%), Gaps = 3/112 (2%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS 67
NSRR RV ++ + ++L + +D + ++S+++V +S DL+ A +++S+
Sbjct: 3 NSRRVSRVSSLIKREVSQMLLF-DIKDDRVGAGMVSVTDVDLSGDLQHAKIFVSIYGTEE 61
Query: 68 PD-RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ L + ++R + + +R LR PE+RF D ++ K+ L+
Sbjct: 62 AKVETMEGLKSSEGYVRKELAQRIR-LRRAPEVRFFEDHGIERGDKMLHLLN 112
>gi|291166368|gb|EFE28414.1| ribosome-binding factor A [Filifactor alocis ATCC 35896]
Length = 121
Score = 118 bits (298), Expect = 2e-25, Method: Composition-based stats.
Identities = 34/110 (30%), Positives = 66/110 (60%), Gaps = 4/110 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLI--SRDVISISEVCMSVDLRVATVYISLPLDVSP 68
R R+ EE+R + ++L E +D I S+ +IS++ V + DL+ A +YIS+ D +P
Sbjct: 5 RTRRISEEIRKVVGNMLLEGEIKDTKIRNSKGLISVTSVEVVRDLKYAYIYISVLGD-NP 63
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ ++ L ++R +GR + +LRY PE+ FR D S+++ +++ ++
Sbjct: 64 ETILDGLKRASGYVRKEVGRQV-DLRYTPEIIFRLDHSIENGVEMSKMIS 112
>gi|255319711|ref|ZP_05360919.1| ribosome-binding factor A [Acinetobacter radioresistens SK82]
gi|262380007|ref|ZP_06073162.1| ribosome-binding factor A [Acinetobacter radioresistens SH164]
gi|255303240|gb|EET82449.1| ribosome-binding factor A [Acinetobacter radioresistens SK82]
gi|262298201|gb|EEY86115.1| ribosome-binding factor A [Acinetobacter radioresistens SH164]
Length = 132
Score = 118 bits (298), Expect = 2e-25, Method: Composition-based stats.
Identities = 33/133 (24%), Positives = 59/133 (44%), Gaps = 16/133 (12%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL--- 64
S+R R+G+ V+ L +I E +D + +++IS V +S DL A VY+++
Sbjct: 3 GSQRLKRMGDSVQRELSELI-RQELKDPRLGG-LVTISAVKVSPDLGYADVYVTVMGREL 60
Query: 65 -----DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ + + + LN F+R + R ++ R P LRF YD + + L+
Sbjct: 61 SDDQNEQAHQQTLEVLNKASGFLRQELSRRIKT-RITPRLRFHYDKTNAYGNYMFGLIAE 119
Query: 120 -----PKIPVALE 127
P+ E
Sbjct: 120 AVKDLPERKEDEE 132
>gi|304437174|ref|ZP_07397135.1| ribosome-binding factor A [Selenomonas sp. oral taxon 149 str.
67H29BP]
gi|304369836|gb|EFM23500.1| ribosome-binding factor A [Selenomonas sp. oral taxon 149 str.
67H29BP]
Length = 136
Score = 118 bits (298), Expect = 2e-25, Method: Composition-based stats.
Identities = 33/112 (29%), Positives = 58/112 (51%), Gaps = 5/112 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPD- 69
R +V E ++ + +I N E +D I ++++ V + DLR A +Y+S+ D
Sbjct: 18 RVEKVQELMKQEVSDIIFN-ELKDPRIG--FVTVTSVACTEDLREAKIYVSVMGDEKKAR 74
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
++ LN ++ F+R IG+ +R LR+ PE+ F DTSL + L+
Sbjct: 75 DTLNGLNSSLGFVRREIGKRIR-LRFTPEISFSLDTSLNYSDHIQRLLNEIH 125
>gi|255066483|ref|ZP_05318338.1| ribosome-binding factor A [Neisseria sicca ATCC 29256]
gi|255049363|gb|EET44827.1| ribosome-binding factor A [Neisseria sicca ATCC 29256]
Length = 123
Score = 118 bits (298), Expect = 2e-25, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 4/117 (3%)
Query: 3 NKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL 62
K + R RV E++ L ++ +D I+I+EV ++ D ATV+ ++
Sbjct: 2 RKLQRGYARQDRVKEQIMRELAE-LVRTGLKDPR--AGFITINEVEVTRDYSHATVFYTV 58
Query: 63 PLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
D + D AL +R + + ++ + PEL F+YD SL+ +++L+
Sbjct: 59 LDDSTRDITEEALEHAKGHLRSELAKRIKLFK-TPELHFKYDESLERGMSISSLIDQ 114
>gi|282899763|ref|ZP_06307726.1| Ribosome-binding factor A [Cylindrospermopsis raciborskii CS-505]
gi|281195378|gb|EFA70312.1| Ribosome-binding factor A [Cylindrospermopsis raciborskii CS-505]
Length = 126
Score = 118 bits (298), Expect = 2e-25, Method: Composition-based stats.
Identities = 26/107 (24%), Positives = 58/107 (54%), Gaps = 3/107 (2%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-DV 66
+RR RV E ++ + ++++ +D + ++S+++V +S DL+ A +++S+ +
Sbjct: 3 TNRRVSRVAELIKREVSQMLIHG-IKDDRVGVGMVSVTDVDVSGDLQHAKIFVSIYGTEE 61
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKL 113
+ ++ L ++R +G +R LR PE+ F D SL+ K+
Sbjct: 62 AKAETMAGLKSATGYVRSELGARVR-LRRTPEVIFVEDHSLERGTKV 107
>gi|108757332|ref|YP_630299.1| ribosome-binding factor A [Myxococcus xanthus DK 1622]
gi|122389557|sp|Q1DAM4|RBFA_MYXXD RecName: Full=Ribosome-binding factor A
gi|108461212|gb|ABF86397.1| ribosome-binding factor A [Myxococcus xanthus DK 1622]
Length = 119
Score = 118 bits (298), Expect = 2e-25, Method: Composition-based stats.
Identities = 32/110 (29%), Positives = 56/110 (50%), Gaps = 4/110 (3%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV-SP 68
R RVG+E+++A+ ++ +D I I+I+ V +S DLRVA V+ S+ +
Sbjct: 5 SRPERVGQEIQAAIGDLLTRGMLRDPRIGY--ITITGVKVSPDLRVARVFYSMMGNEQER 62
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
L F+R + ++ NLR PE+ F +D S+ K++ L+
Sbjct: 63 ADTQKGLEAAKGFVRREVTSAV-NLRVSPEIFFSFDESVGEGDKIDRLLR 111
>gi|126656851|ref|ZP_01728029.1| ribosome-binding factor A [Cyanothece sp. CCY0110]
gi|126621689|gb|EAZ92398.1| ribosome-binding factor A [Cyanothece sp. CCY0110]
Length = 130
Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats.
Identities = 27/112 (24%), Positives = 58/112 (51%), Gaps = 3/112 (2%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS 67
NSRR RV ++ + ++L + +D + ++S+++V +S DL+ A +++S+
Sbjct: 3 NSRRVSRVSSLIKREVSQMLLF-DIKDDRVGAGMVSVTDVDLSGDLQHAKIFVSIYGTEE 61
Query: 68 PD-RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ L + ++R + + +R LR PE+RF D ++ K+ L+
Sbjct: 62 AKMETMEGLKSSEGYVRKELAQRIR-LRRAPEVRFFEDHGIERGDKMLHLLN 112
>gi|266622968|ref|ZP_06115903.1| ribosome-binding factor A [Clostridium hathewayi DSM 13479]
gi|288865261|gb|EFC97559.1| ribosome-binding factor A [Clostridium hathewayi DSM 13479]
Length = 120
Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats.
Identities = 32/123 (26%), Positives = 59/123 (47%), Gaps = 6/123 (4%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
KNS + R+ EV+ L +I E +D I + ++ V ++ DL+ YIS+ D
Sbjct: 3 KNSIKNTRINMEVQRELSEII-RLEIKDPRIHP-MTTVVAVSVTPDLKFCKAYISILGDE 60
Query: 67 SP-DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
I L +IR + R + NLR PE++F D S++ ++ L+ ++
Sbjct: 61 EAGKATIEGLKSAEGYIRRELARRV-NLRNTPEIKFILDQSIEYGVNMSKLI--DEVTKD 117
Query: 126 LEK 128
+++
Sbjct: 118 IKE 120
>gi|166363717|ref|YP_001655990.1| ribosome binding factor A [Microcystis aeruginosa NIES-843]
gi|189039547|sp|B0JRP8|RBFA_MICAN RecName: Full=Ribosome-binding factor A
gi|166086090|dbj|BAG00798.1| ribosome binding factor A [Microcystis aeruginosa NIES-843]
Length = 128
Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats.
Identities = 29/111 (26%), Positives = 61/111 (54%), Gaps = 3/111 (2%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS 67
N RR RV ++ + ++L E +D + ++S+++V +S DL+ A +++S+ +
Sbjct: 3 NDRRVSRVSSLIKREVSQMLL-MEIKDDRVGAGMVSVTDVDLSHDLQHAKIFVSIYGNED 61
Query: 68 -PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
++ L + F+R +G+ +R LR PE+ F D+SL+ ++ L+
Sbjct: 62 AKAETMAGLKASAGFVRRELGQRIR-LRRTPEVVFLEDSSLERGDRMLHLL 111
>gi|262377019|ref|ZP_06070245.1| ribosome-binding factor A [Acinetobacter lwoffii SH145]
gi|262308057|gb|EEY89194.1| ribosome-binding factor A [Acinetobacter lwoffii SH145]
Length = 134
Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 53/119 (44%), Gaps = 11/119 (9%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL--- 64
S+R R+ + V+ L +I E +D + +++IS V +S DL A VY+++
Sbjct: 3 GSQRLKRMADTVQRELSELI-RQELKDPRLGG-LVTISAVKVSPDLGYAEVYVTVMGREL 60
Query: 65 -----DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ + LN F+R + R ++ R P LRF YD + + L+
Sbjct: 61 GDEQSQEANKETLDVLNKASGFLRHELSRRIKT-RITPRLRFHYDKTNAYGNYMFGLIA 118
>gi|332706081|ref|ZP_08426153.1| ribosome-binding factor A [Lyngbya majuscula 3L]
gi|332355173|gb|EGJ34641.1| ribosome-binding factor A [Lyngbya majuscula 3L]
Length = 132
Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats.
Identities = 30/113 (26%), Positives = 60/113 (53%), Gaps = 3/113 (2%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-DV 66
+RR RV ++ + ++LN + +D + ++SI+ V +S DL+ A +Y+S+ D
Sbjct: 3 TNRRVFRVSSLIQQEVSQMLLN-DIKDDRVGSGMVSITNVDVSGDLQHAKIYVSIYGTDE 61
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ + ++ L ++R +GR +R LR PE+ F D L+ ++ L+
Sbjct: 62 ARSKTMAGLKSATGYVRRELGRRIR-LRRTPEVMFIEDRGLEGGDQMLNLLNQ 113
>gi|217967597|ref|YP_002353103.1| ribosome-binding factor A [Dictyoglomus turgidum DSM 6724]
gi|217336696|gb|ACK42489.1| ribosome-binding factor A [Dictyoglomus turgidum DSM 6724]
Length = 127
Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats.
Identities = 34/114 (29%), Positives = 59/114 (51%), Gaps = 4/114 (3%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
MK + +R R+ +R + ++L +D IS ++ I+ V MS DLR A +Y+
Sbjct: 1 MKQGVIEMRQRQERLSALIRQEVSEILLRR-VKDPRISSFLV-ITGVKMSKDLRYAHIYV 58
Query: 61 SL-PLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKL 113
S+ + + + L FIR +G+ LR +R+VPE+ F D SL+ ++
Sbjct: 59 SVYGSEEEKKQTMKGLESAKGFIRSELGKDLR-IRFVPEIFFELDDSLEKGDRI 111
>gi|113476475|ref|YP_722536.1| ribosome-binding factor A [Trichodesmium erythraeum IMS101]
gi|123056530|sp|Q110L1|RBFA_TRIEI RecName: Full=Ribosome-binding factor A
gi|110167523|gb|ABG52063.1| ribosome-binding factor A [Trichodesmium erythraeum IMS101]
Length = 137
Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 62/120 (51%), Gaps = 3/120 (2%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDVSP 68
RR R+ ++ + ++L+ +D + ++S+++V +S DL+ A V++S+ D
Sbjct: 5 RRISRIASLIKQEISQMLLHG-IKDNRVGIGMVSVTDVDVSGDLQHAKVFVSIYGSDEVR 63
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALEK 128
+ ++ L ++R +G+ +R +R PE+ F D SL+ ++ +L+ ++
Sbjct: 64 SQTMAGLRSATGYVRSELGKRIR-MRRTPEVIFVEDRSLERGTEILSLLNKLSQERQQQE 122
>gi|260424716|ref|ZP_05778979.1| ribosome-binding factor A [Dialister invisus DSM 15470]
gi|260402930|gb|EEW96477.1| ribosome-binding factor A [Dialister invisus DSM 15470]
Length = 119
Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats.
Identities = 30/108 (27%), Positives = 55/108 (50%), Gaps = 5/108 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-DVSPD 69
R ++ E ++ + ++L E +D + ++++ V ++ DLR ATVY+SL +
Sbjct: 5 RVRKMQEFIKQEVGNMLLR-ELKDPRLG--FVTVTGVKLTGDLREATVYVSLFGQEEERK 61
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ LN + FIR +G L+ + Y PE+ F D SL + L+
Sbjct: 62 ESLMVLNKSKGFIRKELGTRLK-VYYTPEISFEEDKSLDYGMHIEGLL 108
>gi|312898339|ref|ZP_07757729.1| ribosome-binding factor A [Megasphaera micronuciformis F0359]
gi|310620258|gb|EFQ03828.1| ribosome-binding factor A [Megasphaera micronuciformis F0359]
Length = 115
Score = 118 bits (297), Expect = 3e-25, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 62/112 (55%), Gaps = 5/112 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-DVSPD 69
R ++ E ++ + ++L E +D + +++++ ++ DLR ATVY+SL D
Sbjct: 5 RVRKIQEFIKQEVSRIVLQ-ELKDPRLG--FVTVTDARITGDLREATVYVSLFGSDEEKK 61
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
++AL+ +IR +G+ L +RY P++ F+ D SL+ K+ +++ +
Sbjct: 62 NTLAALSKAQGYIRSEVGKRL-GIRYSPQIEFKEDESLEYGMKIESILHDIE 112
>gi|119774099|ref|YP_926839.1| ribosome-binding factor A [Shewanella amazonensis SB2B]
gi|166219403|sp|A1S463|RBFA_SHEAM RecName: Full=Ribosome-binding factor A
gi|119766599|gb|ABL99169.1| ribosome-binding factor A [Shewanella amazonensis SB2B]
Length = 137
Score = 118 bits (297), Expect = 3e-25, Method: Composition-based stats.
Identities = 32/124 (25%), Positives = 65/124 (52%), Gaps = 8/124 (6%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
+ R R+G++++ L +V+ + +D I ++++++V +S DL A VY++ +
Sbjct: 2 AREFSRTRRIGQQLQQELAFVLQR-DMKDPRIG--MVTVNDVDVSRDLSHAKVYVTFFEE 58
Query: 66 VSP--DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIP 123
+ ++ALN + R + ++ LR +PELRF YD SL +++ L+ K+
Sbjct: 59 DPQVIEAKLAALNTAAPYARTLVAGRMK-LRVMPELRFIYDASLVEGMRMSNLVS--KVI 115
Query: 124 VALE 127
E
Sbjct: 116 RDDE 119
>gi|119486756|ref|ZP_01620731.1| ribosome-binding factor A [Lyngbya sp. PCC 8106]
gi|119456049|gb|EAW37182.1| ribosome-binding factor A [Lyngbya sp. PCC 8106]
Length = 142
Score = 118 bits (297), Expect = 3e-25, Method: Composition-based stats.
Identities = 28/110 (25%), Positives = 58/110 (52%), Gaps = 3/110 (2%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-DVSP 68
RR RV ++ + ++L E +D + ++SI++V ++ DL+ +++S+ + +
Sbjct: 5 RRVSRVAALIKREVSQILLQ-EVKDDRVGSGMVSITDVNVAGDLQHVKIFVSIYGTEEAR 63
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ L +IR +G+ +R LR PE+ F D SL+ K+ +L+
Sbjct: 64 KETMEGLRAATGYIRSSLGQRVR-LRRTPEVLFLEDRSLERGDKMLSLLN 112
>gi|298242765|ref|ZP_06966572.1| ribosome-binding factor A [Ktedonobacter racemifer DSM 44963]
gi|297555819|gb|EFH89683.1| ribosome-binding factor A [Ktedonobacter racemifer DSM 44963]
Length = 128
Score = 118 bits (297), Expect = 3e-25, Method: Composition-based stats.
Identities = 28/110 (25%), Positives = 52/110 (47%), Gaps = 5/110 (4%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-DVSP 68
R ++GE + + L ++ +D + SI+ V +S DLR A V +S+ +
Sbjct: 5 HRQEKLGELIAAELSE-LMRTRVKDPRVG--FASITHVEVSGDLRHAKVMVSVMGTEEEQ 61
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ L F+R + + LRY+P+L F+ D S+ ++ AL+
Sbjct: 62 AATMQGLKNASGFLRHELAERI-TLRYMPDLVFKLDHSIAEGARILALIN 110
>gi|289163638|ref|YP_003453776.1| Ribosome-binding factor A [Legionella longbeachae NSW150]
gi|288856811|emb|CBJ10622.1| Ribosome-binding factor A [Legionella longbeachae NSW150]
Length = 121
Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats.
Identities = 38/122 (31%), Positives = 61/122 (50%), Gaps = 4/122 (3%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
N +R RV E ++ L +I E +D + ++IS V ++ DL A VY ++ D
Sbjct: 2 SHNFKRTDRVAEMIQRKLAQIIPK-EVKDPRL-TGFVTISAVKVAADLGHAKVYFTVLND 59
Query: 66 VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
+ V S LN ++R + RS+ LR VP+L F YD S++ +L+ L+ P
Sbjct: 60 -DREMVASILNAASSYLRSVLARSI-TLRTVPQLHFVYDESIEYGQRLSRLIDKVAPPDD 117
Query: 126 LE 127
E
Sbjct: 118 HE 119
>gi|307150648|ref|YP_003886032.1| ribosome-binding factor A [Cyanothece sp. PCC 7822]
gi|306980876|gb|ADN12757.1| ribosome-binding factor A [Cyanothece sp. PCC 7822]
Length = 133
Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats.
Identities = 28/111 (25%), Positives = 58/111 (52%), Gaps = 3/111 (2%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-DVSP 68
RR RV ++ + ++L E +D + ++S+++V +S DL+ A +++S+ + +
Sbjct: 5 RRVSRVSSLIKREVSQMLLY-EIKDDRVGAGMVSVTDVDVSGDLQHAKIFVSIYGTEQAK 63
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ L + F+R +G+ +R LR PE+ F D SL+ + L+
Sbjct: 64 AETMEGLRSSAGFVRRELGQRIR-LRRTPEIVFFEDRSLERGDRTLHLLNQ 113
>gi|330888657|gb|EGH21318.1| ribosome-binding factor A [Pseudomonas syringae pv. mori str.
301020]
Length = 131
Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 61/120 (50%), Gaps = 8/120 (6%)
Query: 12 ALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRV 71
R+G++++ L +I E +D + +++I V +S D+ A +++++ S + +
Sbjct: 1 TQRIGDQMQRELAQLI-RREIKDPRVG--LVTIPAVDVSRDVGHAKIFMTVMGQDSAEEI 57
Query: 72 ---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALEK 128
I LN F+R ++ R ++ LR VP+L F YD S+ L+AL+ + +
Sbjct: 58 AQTIKVLNSAAGFLRMQLAREMK-LRSVPQLHFHYDESVVRGAHLSALIER-AVAQDGQH 115
>gi|152980431|ref|YP_001354184.1| ribosome-binding factor A [Janthinobacterium sp. Marseille]
gi|172049092|sp|A6T0Y7|RBFA_JANMA RecName: Full=Ribosome-binding factor A
gi|151280508|gb|ABR88918.1| ribosome-binding factor A [Janthinobacterium sp. Marseille]
Length = 128
Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats.
Identities = 34/119 (28%), Positives = 61/119 (51%), Gaps = 6/119 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPD- 69
R LRV ++++ L +I E +D + +I+I+EV ++ D A V+ ++ D D
Sbjct: 11 RGLRVADQIQRDLSEIIAF-ELKDPRVG--MITITEVQVTPDYAHAKVFFTMLSDKKDDI 67
Query: 70 -RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALE 127
+S L +IRG++GR L + +PEL F +DTS +++ L+ A +
Sbjct: 68 KNTVSGLTAASGYIRGQLGRRL-TIHTLPELHFVHDTSTARGIEMSKLIDEANASRAKD 125
>gi|325266651|ref|ZP_08133328.1| ribosome-binding factor A [Kingella denitrificans ATCC 33394]
gi|324982094|gb|EGC17729.1| ribosome-binding factor A [Kingella denitrificans ATCC 33394]
Length = 123
Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats.
Identities = 35/119 (29%), Positives = 51/119 (42%), Gaps = 5/119 (4%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
MK R RV E+V L ++ E +D I+I++V +S D ATVY
Sbjct: 1 MKKPQRNGYARIDRVKEQVMRELAE-LVRTELKDPR--AGFITINDVEVSRDYSHATVYY 57
Query: 61 SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
++ AL F+R + R + R PEL F YD SL+ L+ L+
Sbjct: 58 TVLNG-DRAASAQALEKAKGFLRSELSRRITVFR-TPELHFEYDESLERGVNLSQLIDQ 114
>gi|307564965|ref|ZP_07627482.1| ribosome-binding factor A [Prevotella amnii CRIS 21A-A]
gi|307346278|gb|EFN91598.1| ribosome-binding factor A [Prevotella amnii CRIS 21A-A]
Length = 113
Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats.
Identities = 34/112 (30%), Positives = 56/112 (50%), Gaps = 4/112 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
R R+ ++ L + + Q RL+ ++S++ V +S DL + T Y+S+ +
Sbjct: 5 RQNRISRLLQKELASIFQS---QTRLLHGVLVSVTRVRISPDLSICTAYLSIFPSEKTEE 61
Query: 71 VISALNCNIKFIRGRIGRSLRN-LRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+I +N N K IR +G+ N LR +PELRF D SL + L+ K
Sbjct: 62 LIKNINTNEKTIRYELGKRTHNQLRIIPELRFFVDDSLDYLEHIEHLLKDKK 113
>gi|238020387|ref|ZP_04600813.1| hypothetical protein GCWU000324_00267 [Kingella oralis ATCC 51147]
gi|237867367|gb|EEP68373.1| hypothetical protein GCWU000324_00267 [Kingella oralis ATCC 51147]
Length = 125
Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats.
Identities = 36/127 (28%), Positives = 58/127 (45%), Gaps = 9/127 (7%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
MK + R RV E++ L ++ E +D +I+I++V ++ D ATVY
Sbjct: 1 MKKQQRNGYARVDRVKEQIMRELAE-LVRTELKDPR--AGLITINDVEVTRDYSHATVYY 57
Query: 61 SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM--- 117
++ AL F+R ++ R + R VPEL F YD SL+ L+ L+
Sbjct: 58 TVLNG-DRAASAEALEHAKGFLRSKLSRRITVFR-VPELHFEYDHSLERGMTLSHLIEQA 115
Query: 118 -CLPKIP 123
P +P
Sbjct: 116 AAEPDVP 122
>gi|85860519|ref|YP_462721.1| ribosome-binding factor A [Syntrophus aciditrophicus SB]
gi|123517498|sp|Q2LWT9|RBFA_SYNAS RecName: Full=Ribosome-binding factor A
gi|85723610|gb|ABC78553.1| ribosome-binding factor A [Syntrophus aciditrophicus SB]
Length = 123
Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 63/121 (52%), Gaps = 7/121 (5%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVY-ISLPLDV 66
+RA RV + V+ + ++L +D +SR ++++ V +S DLR A ++ + + D
Sbjct: 3 QFKRADRVADLVKMEIADILLRR-IRDPRVSR--LTVTGVKVSDDLRTARIFFVEMGEDS 59
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVAL 126
+ L FIR +G+ L+ LRYVP+L F+ D+S +++ L+ +I
Sbjct: 60 CHPETLEGLQKAGGFIRKELGKRLK-LRYVPDLIFKPDSSFAYGSRIDQLIN--EIHREE 116
Query: 127 E 127
E
Sbjct: 117 E 117
>gi|90581548|ref|ZP_01237341.1| ribosome-binding factor A [Vibrio angustum S14]
gi|90437310|gb|EAS62508.1| ribosome-binding factor A [Vibrio angustum S14]
Length = 132
Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats.
Identities = 33/115 (28%), Positives = 60/115 (52%), Gaps = 6/115 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP-- 63
K R RV ++++ L +IL E ++ ++ + +IS V +S D+ A VYI+
Sbjct: 2 AKEFSRTQRVAQQLQKELA-LILQRELKEPRLA--MTTISSVDVSRDMGYAKVYITFLTI 58
Query: 64 LDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
D + + ++ L +IR +G+ +R LR PEL F +D SL +++ L+
Sbjct: 59 GDQTEEESLAILREKAPYIRSLLGKQIR-LRVTPELNFIFDQSLTEGMRISNLVS 112
>gi|330447376|ref|ZP_08311025.1| ribosome-binding factor A [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
gi|328491567|dbj|GAA05522.1| ribosome-binding factor A [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
Length = 132
Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats.
Identities = 34/125 (27%), Positives = 63/125 (50%), Gaps = 7/125 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP-- 63
K R RV ++++ L +IL E ++ ++ + +IS V +S D+ A VYI+
Sbjct: 2 AKEFSRTQRVAQQLQKELA-LILQRELKEPRLA--MTTISSVDVSRDMGYAKVYITFLTI 58
Query: 64 LDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIP 123
D + + ++ L +IR +G+ +R LR PEL F +D SL +++ L+ +
Sbjct: 59 GDQTEEESLAILREKAPYIRSLLGKQIR-LRVTPELNFIFDQSLTEGMRISNLVTN-AVR 116
Query: 124 VALEK 128
E+
Sbjct: 117 SDEER 121
>gi|325860163|ref|ZP_08173288.1| ribosome-binding factor A [Prevotella denticola CRIS 18C-A]
gi|327312736|ref|YP_004328173.1| ribosome-binding factor A [Prevotella denticola F0289]
gi|325482250|gb|EGC85258.1| ribosome-binding factor A [Prevotella denticola CRIS 18C-A]
gi|326944166|gb|AEA20051.1| ribosome-binding factor A [Prevotella denticola F0289]
Length = 111
Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats.
Identities = 32/108 (29%), Positives = 57/108 (52%), Gaps = 4/108 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
R R+ ++ L + Q R++ ++S++ V +S DL V T Y+S+ +
Sbjct: 5 RQNRIARLLQKELASIFQ---TQTRMMHGVLVSVTRVKISPDLSVCTAYLSIFPSEKGEE 61
Query: 71 VISALNCNIKFIRGRIGRSLRN-LRYVPELRFRYDTSLQSYWKLNALM 117
++ +N N K IR +G+ + N LR +PELRF D SL +++ L+
Sbjct: 62 LLKNINANEKTIRYELGQRVHNQLRIIPELRFFIDDSLDYLDRIDELL 109
>gi|160880904|ref|YP_001559872.1| ribosome-binding factor A [Clostridium phytofermentans ISDg]
gi|189039535|sp|A9KNW3|RBFA_CLOPH RecName: Full=Ribosome-binding factor A
gi|160429570|gb|ABX43133.1| ribosome-binding factor A [Clostridium phytofermentans ISDg]
Length = 136
Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats.
Identities = 38/113 (33%), Positives = 61/113 (53%), Gaps = 4/113 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
KNS + R+ +EV+ L +I E +D I+ + SI V ++ DL+ A VYIS+ D
Sbjct: 3 KNSIKNTRINQEVQKELSMLISR-ELKDPRINP-MTSIVAVEVAPDLKTAKVYISVLGDE 60
Query: 67 -SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
S ++ L F+RG++ R + NLR PEL F D S++ ++ L+
Sbjct: 61 LSQKNTLAGLKSAAPFLRGQLARGI-NLRNTPELLFVVDQSIEYGVSMSKLIN 112
>gi|332975272|gb|EGK12172.1| ribosome-binding factor A [Kingella kingae ATCC 23330]
Length = 123
Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 53/119 (44%), Gaps = 5/119 (4%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
MK R RV E+V L ++ +D I+I++V ++ D ATVY
Sbjct: 1 MKKPQRNGYARIDRVKEQVMRELAE-LVRTGLKDPR--AGFITINDVEVTRDYSHATVYY 57
Query: 61 SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
++ + + AL F+R + R + R PEL F YD SL+ +L+ L+
Sbjct: 58 TVLSG-DREASLQALEHAKGFLRSELSRRITVFR-TPELHFEYDESLERGVQLSNLIDR 114
>gi|116071460|ref|ZP_01468728.1| Ribosome-binding factor A [Synechococcus sp. BL107]
gi|116065083|gb|EAU70841.1| Ribosome-binding factor A [Synechococcus sp. BL107]
Length = 134
Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 58/118 (49%), Gaps = 3/118 (2%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD-V 66
RR RV +R +++N +D + + ++SI+ V ++ DL+ +++S+ +
Sbjct: 3 QGRRVERVAALIRKETSELLING-IRDERVHKGMVSITSVEVAGDLQHCKIFVSIFGEPN 61
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPV 124
+ V+ L ++RG +GR L +R PE++F+ D L+ + L+ +
Sbjct: 62 DQNEVMEGLEAASGYLRGELGRRL-QMRRAPEVKFQLDRGLEKGTSVLGLLNQLEDQR 118
>gi|254496142|ref|ZP_05109040.1| ribosome-binding factor A [Legionella drancourtii LLAP12]
gi|254354629|gb|EET13266.1| ribosome-binding factor A [Legionella drancourtii LLAP12]
Length = 123
Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats.
Identities = 32/113 (28%), Positives = 60/113 (53%), Gaps = 4/113 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
+N +R R+ E ++ L +I E +D ++ ++IS V ++ DL A +Y ++ L+
Sbjct: 3 QNFKRTDRIAEMIQRKLAQIIPQ-EVKDPRLNG-FVTISAVKVAADLGHAKIYFTV-LNA 59
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ LN ++R + RS+ LR VP+L F YD S++ +L+ L+
Sbjct: 60 DKKLAATILNAAASYLRSALARSI-TLRTVPQLHFIYDESIEYGQRLSRLIDD 111
>gi|159030294|emb|CAO91189.1| rbfA [Microcystis aeruginosa PCC 7806]
Length = 130
Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats.
Identities = 29/111 (26%), Positives = 60/111 (54%), Gaps = 3/111 (2%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS 67
N RR RV ++ + ++L E +D + ++S+++V +S DL+ A +++S+ +
Sbjct: 3 NDRRVSRVSSLIKREVSQMLL-MEIKDDRVGAGMVSVTDVDLSHDLQHARIFVSIYGNKD 61
Query: 68 -PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
++ L F+R +G+ +R LR PE+ F D+SL+ ++ L+
Sbjct: 62 AKAETMAGLKAAAGFVRRELGQRIR-LRRTPEVVFLEDSSLERGDRMLHLL 111
>gi|329847332|ref|ZP_08262360.1| ribosome-binding factor A [Asticcacaulis biprosthecum C19]
gi|328842395|gb|EGF91964.1| ribosome-binding factor A [Asticcacaulis biprosthecum C19]
Length = 118
Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats.
Identities = 33/110 (30%), Positives = 57/110 (51%), Gaps = 6/110 (5%)
Query: 24 MWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-----DVSPDRVISALNCN 78
M ++ E D + ++I+EV MS DLR ATV++ +V ++ ALN +
Sbjct: 1 MEILREEEIHDDALHDVSVTITEVRMSPDLRHATVFVEPLGAGINSNVQVGAIVEALNKH 60
Query: 79 IKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALEK 128
K++RG +G + ++++ P LRF +D S +++AL P I L
Sbjct: 61 SKYMRGVLG-RMIDMKFTPALRFLHDESFNEAARIDALFMRPDIARDLRH 109
>gi|313888345|ref|ZP_07822016.1| ribosome-binding factor A [Peptoniphilus harei ACS-146-V-Sch2b]
gi|312845748|gb|EFR33138.1| ribosome-binding factor A [Peptoniphilus harei ACS-146-V-Sch2b]
Length = 117
Score = 117 bits (295), Expect = 4e-25, Method: Composition-based stats.
Identities = 38/112 (33%), Positives = 60/112 (53%), Gaps = 4/112 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
N++R R+ EEVR + I+ NE +D I + SIS V ++ DL A VY+S+ D
Sbjct: 1 MNNKRINRISEEVRKTISN-IVQNELKDPRIPS-ITSISHVEVTNDLSFAKVYVSVLGDD 58
Query: 67 -SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
D + LN FI+ + ++ LR +PEL F D S++ +L+ L+
Sbjct: 59 YDRDEAVEGLNSAKGFIKKELAHRVK-LRAMPELIFIKDDSIEKAMELDKLI 109
>gi|327312746|ref|YP_004328183.1| ribosome-binding factor A [Prevotella denticola F0289]
gi|326944148|gb|AEA20033.1| ribosome-binding factor A [Prevotella denticola F0289]
Length = 111
Score = 117 bits (295), Expect = 4e-25, Method: Composition-based stats.
Identities = 32/108 (29%), Positives = 57/108 (52%), Gaps = 4/108 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
R R+ ++ L + Q R++ ++S++ V +S DL + T Y+S+ D
Sbjct: 5 RQNRISHLLQKELASIFQ---TQTRMMHGVLVSVTRVKVSPDLSICTAYLSIFPSEKGDE 61
Query: 71 VISALNCNIKFIRGRIGRSLRN-LRYVPELRFRYDTSLQSYWKLNALM 117
++ +N N K IR +G+ + N LR +PELRF D SL +++ L+
Sbjct: 62 LLKNINANEKTIRYDLGQRVHNQLRIIPELRFFIDDSLDYIERIDELL 109
>gi|320355001|ref|YP_004196340.1| ribosome-binding factor A [Desulfobulbus propionicus DSM 2032]
gi|320123503|gb|ADW19049.1| ribosome-binding factor A [Desulfobulbus propionicus DSM 2032]
Length = 131
Score = 117 bits (295), Expect = 4e-25, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 58/121 (47%), Gaps = 4/121 (3%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS 67
S R RV E +++ L ++L D +S ++S V ++ DL+ A VY ++P
Sbjct: 14 ESSRPKRVAEAIKNELTILLLQQ-VADPRLSGVLVS--RVVVTPDLKQAKVYFTVPAGKD 70
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALE 127
+ ++ F R + ++L NLRY PEL F YD + ++++L + E
Sbjct: 71 SGPALKGMHRAKGFFRSHLAKTL-NLRYTPELLFYYDNLNEEAERIDSLFRQIEDERKHE 129
Query: 128 K 128
+
Sbjct: 130 Q 130
>gi|92115188|ref|YP_575116.1| ribosome-binding factor A [Chromohalobacter salexigens DSM 3043]
gi|122419135|sp|Q1QSZ1|RBFA_CHRSD RecName: Full=Ribosome-binding factor A
gi|91798278|gb|ABE60417.1| ribosome-binding factor A [Chromohalobacter salexigens DSM 3043]
Length = 131
Score = 117 bits (295), Expect = 4e-25, Method: Composition-based stats.
Identities = 34/114 (29%), Positives = 63/114 (55%), Gaps = 7/114 (6%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
+ +R RV ++++ L V++ E +D + ++++S V +S DL A +YI+L +
Sbjct: 2 REFKRTDRVADQLQQELA-VLIQREIKDPRLG--MVTVSSVKVSRDLGYADIYITLLGEN 58
Query: 67 SP---DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
D + L F+R +I ++ LR+VPELRF YD S+ +L++L+
Sbjct: 59 DAARIDENLKVLRHARGFLRSQIANRIK-LRHVPELRFHYDESVVRGQRLSSLI 111
>gi|91792368|ref|YP_562019.1| ribosome-binding factor A [Shewanella denitrificans OS217]
gi|123061155|sp|Q12QI0|RBFA_SHEDO RecName: Full=Ribosome-binding factor A
gi|91714370|gb|ABE54296.1| ribosome-binding factor A [Shewanella denitrificans OS217]
Length = 142
Score = 117 bits (295), Expect = 4e-25, Method: Composition-based stats.
Identities = 31/116 (26%), Positives = 62/116 (53%), Gaps = 6/116 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K R R+ ++++ L VIL + +D I +++++V +S DL A V+++ +
Sbjct: 2 AKEFSRTRRIAQQLQQELA-VILQRDMKDPRIG--FVTVNDVDVSRDLSYAKVFVTFYEE 58
Query: 66 VSP--DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
++ I+AL ++R + ++ LR +PELRF YD+SL +++ L+
Sbjct: 59 DLTLVEQKIAALTAAAPYVRTLVAGRMK-LRVMPELRFIYDSSLVEGMRMSNLVSQ 113
>gi|86148616|ref|ZP_01066899.1| ribosome-binding factor A [Vibrio sp. MED222]
gi|218710444|ref|YP_002418065.1| ribosome-binding factor A [Vibrio splendidus LGP32]
gi|254789773|sp|B7VJH6|RBFA_VIBSL RecName: Full=Ribosome-binding factor A
gi|85833607|gb|EAQ51782.1| ribosome-binding factor A [Vibrio sp. MED222]
gi|218323463|emb|CAV19640.1| ribosome-binding factor A [Vibrio splendidus LGP32]
Length = 137
Score = 117 bits (295), Expect = 5e-25, Method: Composition-based stats.
Identities = 33/115 (28%), Positives = 64/115 (55%), Gaps = 6/115 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP-- 63
K R RV ++++ L +IL E +D I +++IS+V +S DL A V+++
Sbjct: 2 SKEFSRTQRVSQQLQKELA-LILQREVRDSRIG--MVTISDVEVSRDLAYAKVFVTFLCI 58
Query: 64 LDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ +P+ ++AL + +R +G+ +R+ R PE+RF YD +L +++ L+
Sbjct: 59 GEQTPESCLAALKEHEVPVRMALGKRIRH-RLTPEVRFTYDNTLVEGMRMSNLVS 112
>gi|313892629|ref|ZP_07826216.1| ribosome-binding factor A [Dialister microaerophilus UPII 345-E]
gi|329121251|ref|ZP_08249878.1| ribosome-binding factor A [Dialister micraerophilus DSM 19965]
gi|313119026|gb|EFR42231.1| ribosome-binding factor A [Dialister microaerophilus UPII 345-E]
gi|327470185|gb|EGF15648.1| ribosome-binding factor A [Dialister micraerophilus DSM 19965]
Length = 117
Score = 117 bits (295), Expect = 5e-25, Method: Composition-based stats.
Identities = 33/109 (30%), Positives = 59/109 (54%), Gaps = 5/109 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-DVSPD 69
R ++ E ++ + ++LN +D + ++++V ++ DLR ATVY+SL +
Sbjct: 5 RVRKIQEFIKQEVGKLLLNG-IKDPRLG--FTTVTDVKVTGDLREATVYVSLFGSEKEKK 61
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
++ LN FIR +G+SL N+ Y PE+ F D SL+ K+ L+
Sbjct: 62 DSLNVLNKAKGFIRKEVGKSL-NIFYSPEISFEEDKSLEYGMKIEKLLN 109
>gi|260589526|ref|ZP_05855439.1| ribosome-binding factor A [Blautia hansenii DSM 20583]
gi|260540094|gb|EEX20663.1| ribosome-binding factor A [Blautia hansenii DSM 20583]
Length = 128
Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats.
Identities = 33/126 (26%), Positives = 60/126 (47%), Gaps = 8/126 (6%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
KNS + RV EV+ L +I +D I + S++ V ++ DL+ YIS+ +
Sbjct: 3 KNSIKNTRVNVEVQHELANLIREG-IKDPRIHP-MTSVTAVEVAPDLKTCRAYISVMGNE 60
Query: 67 S-PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL----PK 121
+ I L +IR ++ +++ NLR PE+RF D S++ ++ L+ +
Sbjct: 61 EAKNNTIVGLKSAEGYIRRQLAKNI-NLRNTPEIRFILDESIEYGVAMSKLIDEVTGKEE 119
Query: 122 IPVALE 127
+ E
Sbjct: 120 VQEDGE 125
>gi|240146072|ref|ZP_04744673.1| ribosome-binding factor A [Roseburia intestinalis L1-82]
gi|257201817|gb|EEV00102.1| ribosome-binding factor A [Roseburia intestinalis L1-82]
gi|291536071|emb|CBL09183.1| ribosome-binding factor A [Roseburia intestinalis M50/1]
gi|291538568|emb|CBL11679.1| ribosome-binding factor A [Roseburia intestinalis XB6B4]
Length = 126
Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 63/121 (52%), Gaps = 6/121 (4%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
KNS + R+ EV+ L +I E +D I+ + S+ V ++ DL+ YIS+ D
Sbjct: 3 KNSIKNTRINGEVQRELSNII-RGEIKDPRINP-LTSVVAVEVAPDLKTCKAYISVLGDE 60
Query: 67 SPD-RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
+ ++ L FIR ++ +++ NLR PE+RF D S++ K++ ++ ++
Sbjct: 61 ESQAKTLAGLKSAEGFIRSKLAKTV-NLRNTPEIRFVLDQSIEYGVKMSKMI--DEVTKD 117
Query: 126 L 126
+
Sbjct: 118 I 118
>gi|91206050|ref|YP_538405.1| ribosome-binding factor A [Rickettsia bellii RML369-C]
gi|157826584|ref|YP_001495648.1| ribosome-binding factor A [Rickettsia bellii OSU 85-389]
gi|122425244|sp|Q1RH48|RBFA_RICBR RecName: Full=Ribosome-binding factor A
gi|166219400|sp|A8GUU4|RBFA_RICB8 RecName: Full=Ribosome-binding factor A
gi|91069594|gb|ABE05316.1| Ribosome-binding factor A [Rickettsia bellii RML369-C]
gi|157801888|gb|ABV78611.1| ribosome-binding factor A [Rickettsia bellii OSU 85-389]
Length = 123
Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 58/120 (48%), Gaps = 2/120 (1%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
MK +NS R +V + AL+ ++ + D + ++I+++ ++ DL++A Y
Sbjct: 1 MKKLTSENSHRQQKVASIINEALIEILHRGKMLDPRLYDCPLTITKIIVTADLKIANCYF 60
Query: 61 SLPLDV-SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+P + +LN + IR + + N++Y P++RF YD + K+ L+
Sbjct: 61 LPFNTKLTPQEITESLNNSKNAIRNFVTGKI-NMKYSPDIRFHYDHGFDNALKVEQLLKD 119
>gi|333029565|ref|ZP_08457626.1| ribosome-binding factor A [Bacteroides coprosuis DSM 18011]
gi|332740162|gb|EGJ70644.1| ribosome-binding factor A [Bacteroides coprosuis DSM 18011]
Length = 110
Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats.
Identities = 32/112 (28%), Positives = 58/112 (51%), Gaps = 4/112 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
+ R ++ ++ L + L Q + + +IS+SEV ++ DL +A Y+S+ +
Sbjct: 1 METTRQQKISRLIQKELSEIFLQ---QTKATNGILISVSEVRVTSDLSIARAYLSIFPND 57
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRN-LRYVPELRFRYDTSLQSYWKLNALM 117
+I +N N K IR +G +R+ LR +PEL F D SL +++ L+
Sbjct: 58 KKQELIENINANAKAIRYDLGTRVRHQLRIIPELIFHIDDSLDYAERIDELL 109
>gi|257094532|ref|YP_003168173.1| ribosome-binding factor A [Candidatus Accumulibacter phosphatis
clade IIA str. UW-1]
gi|257047056|gb|ACV36244.1| ribosome-binding factor A [Candidatus Accumulibacter phosphatis
clade IIA str. UW-1]
Length = 136
Score = 117 bits (294), Expect = 6e-25, Method: Composition-based stats.
Identities = 32/116 (27%), Positives = 56/116 (48%), Gaps = 5/116 (4%)
Query: 4 KNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP 63
+ R R+ E++R L +I E +D + +IS++EV +S D A V+ S
Sbjct: 2 SGNRGFARRDRIAEQIRRELAELI-RTELRDPRVG--MISLTEVQVSADYAHAKVFFSTL 58
Query: 64 LDVSP-DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
D V + L F+R +G+ + ++ PEL F +D SL+ +L+ L+
Sbjct: 59 AGSEQLDAVYAGLQHAGGFLRRELGKRI-SIHATPELHFVFDASLEHGAQLSKLIS 113
>gi|89095213|ref|ZP_01168136.1| Ribosome-binding factor A [Oceanospirillum sp. MED92]
gi|89080510|gb|EAR59759.1| Ribosome-binding factor A [Oceanospirillum sp. MED92]
Length = 135
Score = 117 bits (294), Expect = 6e-25, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 62/118 (52%), Gaps = 10/118 (8%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
++ R R+ ++++ L +I E +D + ++++S V +S DL A VYI++
Sbjct: 2 ARDYSRTERIADQLQRELAQLI-QFEIKDPRLG--MVTVSYVKVSKDLGFADVYITVLPL 58
Query: 66 VSPDRV------ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
D + LN F+RG + R+++ LR +P+LRF +D +++ L+ L+
Sbjct: 59 NGKDEAEAIVDSLKVLNSAAGFLRGELARNIK-LRIMPQLRFHFDETIERGRHLHHLI 115
>gi|238019438|ref|ZP_04599864.1| hypothetical protein VEIDISOL_01307 [Veillonella dispar ATCC 17748]
gi|237864137|gb|EEP65427.1| hypothetical protein VEIDISOL_01307 [Veillonella dispar ATCC 17748]
Length = 118
Score = 117 bits (294), Expect = 6e-25, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 61/119 (51%), Gaps = 7/119 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-DVSPD 69
R ++ E ++ + +++ +D I +I++V ++ DLR AT+Y+SL D +
Sbjct: 5 RVRKLQEFIKQEVSQMLMRG-LKDPRIG--FTTITDVHVTGDLREATIYVSLFGSDKEKE 61
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALEK 128
+ AL IR +G+ L+ LR++P + F DTSL + +L+ +I EK
Sbjct: 62 DTLIALKHAAGHIRTELGKVLK-LRHIPSITFDKDTSLDYSMHIESLLN--EIKKDEEK 117
>gi|288803485|ref|ZP_06408917.1| ribosome-binding factor A [Prevotella melaninogenica D18]
gi|302346037|ref|YP_003814390.1| ribosome-binding factor A [Prevotella melaninogenica ATCC 25845]
gi|288334095|gb|EFC72538.1| ribosome-binding factor A [Prevotella melaninogenica D18]
gi|302149916|gb|ADK96178.1| ribosome-binding factor A [Prevotella melaninogenica ATCC 25845]
Length = 111
Score = 117 bits (294), Expect = 6e-25, Method: Composition-based stats.
Identities = 32/108 (29%), Positives = 57/108 (52%), Gaps = 4/108 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
R R+ ++ L + Q R++ ++S++ V +S DL + T Y+S+ D
Sbjct: 5 RQNRISRLLQKELASIFQ---TQTRMMHGVLVSVTRVKVSPDLSICTAYLSIFPSEKGDE 61
Query: 71 VISALNCNIKFIRGRIGRSLRN-LRYVPELRFRYDTSLQSYWKLNALM 117
++ +N N K IR +G+ + N LR +PELRF D SL +++ L+
Sbjct: 62 ILKNINANEKTIRYDLGQRVHNQLRIIPELRFFIDDSLDYLERIDELL 109
>gi|325268521|ref|ZP_08135151.1| ribosome-binding factor A [Prevotella multiformis DSM 16608]
gi|324989049|gb|EGC21002.1| ribosome-binding factor A [Prevotella multiformis DSM 16608]
Length = 111
Score = 117 bits (294), Expect = 6e-25, Method: Composition-based stats.
Identities = 30/108 (27%), Positives = 57/108 (52%), Gaps = 4/108 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
R R+ ++ L + Q R++ ++S++ V +S DL + T Y+S+ +
Sbjct: 5 RQNRIARLLQKELASIFQ---TQTRMMHGVLVSVTRVKISPDLSICTAYLSIFPSEKGEE 61
Query: 71 VISALNCNIKFIRGRIGRSLRN-LRYVPELRFRYDTSLQSYWKLNALM 117
++ +N N K +R +G+ + N LR +PELRF D SL +++ L+
Sbjct: 62 LLKNINANEKTVRYELGQRVHNQLRIIPELRFFIDDSLDYLDRIDELL 109
>gi|170076709|ref|YP_001733347.1| ribosome-binding factor A [Synechococcus sp. PCC 7002]
gi|238692796|sp|B1XLD1|RBFA_SYNP2 RecName: Full=Ribosome-binding factor A
gi|169884378|gb|ACA98091.1| ribosome-binding factor A [Synechococcus sp. PCC 7002]
Length = 131
Score = 117 bits (294), Expect = 6e-25, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 63/117 (53%), Gaps = 3/117 (2%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDV 66
NSRR +V ++ + +++ + +D + ++SI+EV +S DL+ A +++S+ +
Sbjct: 3 NSRRVSKVSSLIKREVSLMLMQ-DIKDDRVGAGMVSITEVEVSGDLQHAKIFVSIYGSEE 61
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIP 123
+ + L + F+R +G+ +R LR PE+ F D SL+ ++ L+ +I
Sbjct: 62 ARAETMEGLRASQGFVRRTLGQRIR-LRRSPEVLFIEDRSLEEGDRMIHLINQLEIK 117
>gi|262374028|ref|ZP_06067305.1| ribosome-binding factor A [Acinetobacter junii SH205]
gi|262311039|gb|EEY92126.1| ribosome-binding factor A [Acinetobacter junii SH205]
Length = 133
Score = 117 bits (294), Expect = 6e-25, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 54/119 (45%), Gaps = 11/119 (9%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL--- 64
S+R R+ + V+ L +I E +D + +++IS V +S DL A VY+++
Sbjct: 3 GSQRLKRMADSVQRELSELI-RQELKDPRLGG-LVTISAVKVSADLGYAEVYVTVMGREL 60
Query: 65 -----DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ + + LN F+R + R ++ R P LRF YD + + L+
Sbjct: 61 GDEQSEAANKETLDVLNKASGFLRHELSRRIKT-RITPRLRFHYDKTNAYGNYMFGLIA 118
>gi|22299172|ref|NP_682419.1| ribosome-binding factor A [Thermosynechococcus elongatus BP-1]
gi|29427713|sp|Q8DIF9|RBFA_THEEB RecName: Full=Ribosome-binding factor A
gi|22295354|dbj|BAC09181.1| ribosome binding factor A [Thermosynechococcus elongatus BP-1]
Length = 126
Score = 116 bits (293), Expect = 6e-25, Method: Composition-based stats.
Identities = 29/111 (26%), Positives = 59/111 (53%), Gaps = 3/111 (2%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS-P 68
RR RV E ++ + +++ E +D + ++S+++V +S DL+ A +++S+
Sbjct: 5 RRVARVAELIKREVSQLLMY-EIRDERVGAGMVSVTDVEVSGDLQHAKIFVSIYSTEEVR 63
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
++ L F+R +G+ +R LR PE+ F D SL+ ++ AL+
Sbjct: 64 RSTMAGLKAASGFVRRELGQRIR-LRRTPEVVFIEDRSLERGSRVLALLNQ 113
>gi|294674933|ref|YP_003575549.1| ribosome-binding factor A [Prevotella ruminicola 23]
gi|294472925|gb|ADE82314.1| ribosome-binding factor A [Prevotella ruminicola 23]
Length = 111
Score = 116 bits (293), Expect = 7e-25, Method: Composition-based stats.
Identities = 30/108 (27%), Positives = 54/108 (50%), Gaps = 4/108 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
R ++ ++ L + Q R +IS++ +S DL + T Y+S+ +
Sbjct: 5 RQNKIARLLQKELSLIFQQ---QTRATHGVMISVTRTKISPDLSICTAYLSVFPSEKGEE 61
Query: 71 VISALNCNIKFIRGRIGRSLRN-LRYVPELRFRYDTSLQSYWKLNALM 117
+++ +N N K IR +G +RN +R +PELRF D SL ++ L+
Sbjct: 62 ILTNINANTKQIRYELGTRVRNQMRIIPELRFFIDDSLDYIEHIDELL 109
>gi|282895926|ref|ZP_06303966.1| Ribosome-binding factor A [Raphidiopsis brookii D9]
gi|281199171|gb|EFA74040.1| Ribosome-binding factor A [Raphidiopsis brookii D9]
Length = 120
Score = 116 bits (293), Expect = 7e-25, Method: Composition-based stats.
Identities = 27/107 (25%), Positives = 59/107 (55%), Gaps = 3/107 (2%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-DV 66
+RR RV E ++ + ++L+ +D + ++S+++V +S DL+ A +++S+ +
Sbjct: 3 TNRRVSRVAELIKREVSQMLLHG-IKDDRVGVGMVSVTDVDVSGDLQHAKIFVSIYGTEE 61
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKL 113
+ + ++ L ++R +G +R LR PE+ F D SL+ K+
Sbjct: 62 AKAQTMAGLKSATGYVRSELGARVR-LRRTPEVIFVEDRSLERGTKV 107
>gi|255024282|ref|ZP_05296268.1| ribosome-binding factor A [Listeria monocytogenes FSL J1-208]
Length = 106
Score = 116 bits (293), Expect = 7e-25, Method: Composition-based stats.
Identities = 29/101 (28%), Positives = 53/101 (52%), Gaps = 5/101 (4%)
Query: 20 RSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-DVSPDRVISALNCN 78
+ L ++ N + +D + ++++ V ++ DL+ A V+IS+ D + + AL
Sbjct: 5 KKELGDIL-NRKIKDPRLG--FVTVTGVDVTGDLQEAKVFISILGTDKEKENTLLALAKA 61
Query: 79 IKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
FIR IGR +R LR VPE+ F D S+ +++ L+
Sbjct: 62 HGFIRSEIGRRIR-LRKVPEMSFEIDNSIAYGNRIDELLRD 101
>gi|189424729|ref|YP_001951906.1| ribosome-binding factor A [Geobacter lovleyi SZ]
gi|259552000|sp|B3EAE8|RBFA_GEOLS RecName: Full=Ribosome-binding factor A
gi|189420988|gb|ACD95386.1| ribosome-binding factor A [Geobacter lovleyi SZ]
Length = 123
Score = 116 bits (293), Expect = 7e-25, Method: Composition-based stats.
Identities = 26/110 (23%), Positives = 59/110 (53%), Gaps = 5/110 (4%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS-P 68
+R+ +V E + + + ++ D I ++I+ V ++ DL +A ++ ++ D +
Sbjct: 4 KRSDKVAETIHTTISTILSRG-LNDPRIG--FVTITGVEVTDDLHLARIFFTVIGDEAAK 60
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ LN +FIR +G+ L+ +RY P++ F+YD S + +++ L+
Sbjct: 61 KSSEAGLNSAARFIRHELGKVLK-MRYTPDILFKYDHSQEYGQRIDDLLR 109
>gi|221632779|ref|YP_002522001.1| ribosome-binding factor A [Thermomicrobium roseum DSM 5159]
gi|254789771|sp|B9KZ59|RBFA_THERP RecName: Full=Ribosome-binding factor A
gi|221155649|gb|ACM04776.1| ribosome-binding factor A [Thermomicrobium roseum DSM 5159]
Length = 129
Score = 116 bits (293), Expect = 7e-25, Method: Composition-based stats.
Identities = 34/123 (27%), Positives = 58/123 (47%), Gaps = 5/123 (4%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD- 65
S R R+ E +R + +I E +D + +S++ V MS DLR A V++S+
Sbjct: 1 MPSYRQARLAEFLRDEIAAIIQR-ELRDPRLG--FVSVTRVEMSPDLRHAKVFVSIYGSH 57
Query: 66 VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
+ + AL FIR I L R++PEL F+ D SL+ ++ L+ +
Sbjct: 58 EEQEAALEALQGAAGFIRRLIAPHLHT-RHIPELHFKLDRSLEHAEQVARLLRQIQQERQ 116
Query: 126 LEK 128
++
Sbjct: 117 RDE 119
>gi|149925036|ref|ZP_01913354.1| ribosome-binding factor A [Plesiocystis pacifica SIR-1]
gi|149814100|gb|EDM73726.1| ribosome-binding factor A [Plesiocystis pacifica SIR-1]
Length = 153
Score = 116 bits (293), Expect = 7e-25, Method: Composition-based stats.
Identities = 36/121 (29%), Positives = 65/121 (53%), Gaps = 3/121 (2%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDV-ISISEVCMSVDLRVATVYISLPLDV- 66
SRR RV E +R + ++L E +D + +S++ V +S DL VAT+Y+ + +
Sbjct: 2 SRRRQRVEELLRREMAQMLLRGELRDPRLQPASAVSVTGVSVSPDLSVATIYVDVLTEAL 61
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVAL 126
+ V++AL IR ++G + LR PELRF +D S++ ++ A++ + L
Sbjct: 62 RLESVLAALRAGGGAIRRKLGERV-QLRRTPELRFHHDDSIERGNRVEAILTELRDAGEL 120
Query: 127 E 127
+
Sbjct: 121 D 121
>gi|56379642|dbj|BAD75550.1| ribosome-binding factor A [Geobacillus kaustophilus HTA426]
Length = 112
Score = 116 bits (293), Expect = 7e-25, Method: Composition-based stats.
Identities = 27/98 (27%), Positives = 50/98 (51%), Gaps = 5/98 (5%)
Query: 23 LMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP-DRVISALNCNIKF 81
+ +I +D I +++++V ++ DL+ A VYIS+ D + + AL F
Sbjct: 1 MSDIISRR-LKDPRIG--FVTVTDVRVTGDLQQAKVYISVLGDDKQRENTLKALEKAKGF 57
Query: 82 IRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
IR IG+ +R LR PE+ F D +++ ++ L+
Sbjct: 58 IRSEIGQRIR-LRKTPEIFFEIDETMEYGSRIEQLIRQ 94
>gi|148263959|ref|YP_001230665.1| ribosome-binding factor A [Geobacter uraniireducens Rf4]
gi|189039543|sp|A5GF87|RBFA_GEOUR RecName: Full=Ribosome-binding factor A
gi|146397459|gb|ABQ26092.1| ribosome-binding factor A [Geobacter uraniireducens Rf4]
Length = 122
Score = 116 bits (293), Expect = 7e-25, Method: Composition-based stats.
Identities = 31/110 (28%), Positives = 61/110 (55%), Gaps = 5/110 (4%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVS 67
+R+ +V E V + +++ +D I ++I+ V ++ D+ +ATVY + + D
Sbjct: 2 FKRSEKVAEAVHELISELLVKG-LKDPRIG--FVTITGVKVTDDMHLATVYFTVIGSDAE 58
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
LN FIR +G+SLR +RYVP++ F+YD S+ +++ +++
Sbjct: 59 KKATEQGLNSARGFIRKEMGKSLR-MRYVPDIVFKYDVSVDYGYRIESIL 107
>gi|282879081|ref|ZP_06287841.1| ribosome-binding factor A [Prevotella buccalis ATCC 35310]
gi|281298815|gb|EFA91224.1| ribosome-binding factor A [Prevotella buccalis ATCC 35310]
Length = 111
Score = 116 bits (293), Expect = 8e-25, Method: Composition-based stats.
Identities = 33/108 (30%), Positives = 54/108 (50%), Gaps = 4/108 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
R R+ ++ L + + Q R ++S++ V +S DL + T Y+S+ +
Sbjct: 5 RQNRIARLLQKELAIIFQS---QTRATHGVMVSVTRVRVSPDLSICTAYLSIFPSEKAEE 61
Query: 71 VISALNCNIKFIRGRIGRSLRN-LRYVPELRFRYDTSLQSYWKLNALM 117
+I + N K IR +G +RN LR VPELRF D SL ++ L+
Sbjct: 62 IIKNITANEKTIRYDLGTRVRNQLRIVPELRFFIDDSLDYIEHIDELL 109
>gi|84387284|ref|ZP_00990305.1| ribosome-binding factor A [Vibrio splendidus 12B01]
gi|84377931|gb|EAP94793.1| ribosome-binding factor A [Vibrio splendidus 12B01]
Length = 137
Score = 116 bits (293), Expect = 8e-25, Method: Composition-based stats.
Identities = 33/115 (28%), Positives = 64/115 (55%), Gaps = 6/115 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP-- 63
K R RV ++++ L +IL E +D I +++IS+V +S DL A V+++
Sbjct: 2 SKEFSRTQRVSQQLQKELA-LILQREVRDSRIG--MVTISDVEVSRDLAYAKVFVTFLCI 58
Query: 64 LDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ +P+ ++AL + +R +G+ +R+ R PE+RF YD +L +++ L+
Sbjct: 59 GEQTPESCLAALKEHEVPVRMALGKRIRH-RLTPEVRFTYDNTLVEGMRMSNLVS 112
>gi|300087634|ref|YP_003758156.1| ribosome-binding factor A [Dehalogenimonas lykanthroporepellens
BL-DC-9]
gi|299527367|gb|ADJ25835.1| ribosome-binding factor A [Dehalogenimonas lykanthroporepellens
BL-DC-9]
Length = 120
Score = 116 bits (293), Expect = 8e-25, Method: Composition-based stats.
Identities = 31/112 (27%), Positives = 60/112 (53%), Gaps = 5/112 (4%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD-VS 67
S R ++ + +R L V + E +D + ++SI+ V + DL++A V++S +
Sbjct: 2 SHRIEKINQLIREELSQV-MQREIRDPRLE--LLSINAVETTADLKLAKVFVSHLSSSEN 58
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
++ AL + RG +G+ + LRYVPEL F +D S++ +++ L+
Sbjct: 59 RPEIMKALGGATGYFRGELGK-VLTLRYVPELAFYWDDSIERGARMDRLIDR 109
>gi|282859948|ref|ZP_06269036.1| ribosome-binding factor A [Prevotella bivia JCVIHMP010]
gi|282587351|gb|EFB92568.1| ribosome-binding factor A [Prevotella bivia JCVIHMP010]
Length = 111
Score = 116 bits (293), Expect = 8e-25, Method: Composition-based stats.
Identities = 31/108 (28%), Positives = 58/108 (53%), Gaps = 4/108 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
R R+ ++ L + + Q R++ ++S++ V +S DL + T Y+S+ +
Sbjct: 5 RQNRISRLLQKELASIFQS---QTRMLHGVLVSVTRVKVSPDLSICTAYLSIFPSDKAEE 61
Query: 71 VISALNCNIKFIRGRIGRSLRN-LRYVPELRFRYDTSLQSYWKLNALM 117
+++ +N N K IR +G+ N LR +PELRF D SL +++ L+
Sbjct: 62 LLNNINANDKTIRYELGQRTHNQLRIIPELRFFIDDSLDYLDRIDHLL 109
>gi|292492787|ref|YP_003528226.1| ribosome-binding factor A [Nitrosococcus halophilus Nc4]
gi|291581382|gb|ADE15839.1| ribosome-binding factor A [Nitrosococcus halophilus Nc4]
Length = 127
Score = 116 bits (293), Expect = 8e-25, Method: Composition-based stats.
Identities = 32/113 (28%), Positives = 59/113 (52%), Gaps = 5/113 (4%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
+ R R+GE ++ L +I E +D + ++++S V +S DLR A VY++
Sbjct: 2 SQEFSRTRRIGELLQRELAQLI-QEELKDPRVK--LVTVSHVGVSPDLRQAKVYVTFLGG 58
Query: 66 VS-PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ ++ LN F++ + + + LR +P LRF YD S++ L+AL+
Sbjct: 59 EKNIQQQLAVLNKAAGFLQHGLSQRV-ELRAIPRLRFVYDDSIERGRHLSALI 110
>gi|294791741|ref|ZP_06756889.1| ribosome-binding factor A [Veillonella sp. 6_1_27]
gi|294456971|gb|EFG25333.1| ribosome-binding factor A [Veillonella sp. 6_1_27]
Length = 118
Score = 116 bits (293), Expect = 8e-25, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 60/118 (50%), Gaps = 7/118 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-DVSPD 69
R ++ E ++ + +++ +D I +I++V ++ DLR AT+Y+SL D +
Sbjct: 5 RVRKLQEFIKQEVSQMLMRG-LKDPRIG--FTTITDVHVTGDLREATIYVSLFGSDKEKE 61
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALE 127
+ AL IR +G+ L+ LR++P + F DTSL + +L+ +I E
Sbjct: 62 DTLIALKHAAGHIRTELGKVLK-LRHIPSITFDKDTSLDYSMHIESLLN--EIKKDEE 116
>gi|313894756|ref|ZP_07828316.1| ribosome-binding factor A [Selenomonas sp. oral taxon 137 str.
F0430]
gi|312976437|gb|EFR41892.1| ribosome-binding factor A [Selenomonas sp. oral taxon 137 str.
F0430]
Length = 124
Score = 116 bits (293), Expect = 8e-25, Method: Composition-based stats.
Identities = 31/112 (27%), Positives = 58/112 (51%), Gaps = 5/112 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP-D 69
R +V E ++ + +IL ++ +D I ++++ V + DLR A +Y+S+ D
Sbjct: 5 RVEKVQELMKQEISDIIL-HDLKDPRIG--FVTVTSVACTEDLREAKIYVSVMGDEKGVQ 61
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
++ LN + ++R IGR +R LR+ PE+ F DTSL + ++
Sbjct: 62 ESLAGLNRALGYVRREIGRRIR-LRFTPEISFALDTSLNYSDHIQRILNTLH 112
>gi|222055782|ref|YP_002538144.1| ribosome-binding factor A [Geobacter sp. FRC-32]
gi|254789751|sp|B9M1G1|RBFA_GEOSF RecName: Full=Ribosome-binding factor A
gi|221565071|gb|ACM21043.1| ribosome-binding factor A [Geobacter sp. FRC-32]
Length = 123
Score = 116 bits (293), Expect = 8e-25, Method: Composition-based stats.
Identities = 29/110 (26%), Positives = 60/110 (54%), Gaps = 5/110 (4%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVS 67
+R+ +V E V + +++ +D I ++I+ V ++ D+ +AT+Y + + D
Sbjct: 2 FKRSEKVAEAVHELVSELLVKG-LKDPRIG--FVTITGVKVTDDMHLATIYFTVIGSDEE 58
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
LN FIR +G+S R +RYVP++ F+YD S++ ++ +++
Sbjct: 59 KKATEQGLNSARGFIRKEMGKSFR-MRYVPDIVFKYDASVEYGSRIESIL 107
>gi|146308622|ref|YP_001189087.1| ribosome-binding factor A [Pseudomonas mendocina ymp]
gi|166219393|sp|A4XYD9|RBFA_PSEMY RecName: Full=Ribosome-binding factor A
gi|145576823|gb|ABP86355.1| ribosome-binding factor A [Pseudomonas mendocina ymp]
Length = 129
Score = 116 bits (293), Expect = 8e-25, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 67/118 (56%), Gaps = 8/118 (6%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL- 64
K+ R R+G++++ L V++ E +D + +++I+ V +S DL A V+I++
Sbjct: 2 AKDYSRTQRIGDQMQRELA-VLIQREIKDPRLG--LVTITAVDVSRDLSHAKVFITVMGK 58
Query: 65 DVSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
D +++ + L ++R +G+S++ +R +P+L F YD S++ +L+AL+
Sbjct: 59 DDDAEQIKLNLEILGEAAGYLRMLLGKSMK-VRTIPQLHFHYDASIRRGAELSALIER 115
>gi|87125212|ref|ZP_01081058.1| Ribosome-binding factor A [Synechococcus sp. RS9917]
gi|86166981|gb|EAQ68242.1| Ribosome-binding factor A [Synechococcus sp. RS9917]
Length = 136
Score = 116 bits (293), Expect = 8e-25, Method: Composition-based stats.
Identities = 28/115 (24%), Positives = 57/115 (49%), Gaps = 3/115 (2%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-DV 66
RR RV +R ++++ +D + + ++SI+EV +S DL+ +++S+ D
Sbjct: 3 PGRRVERVAALIRRETSELLIHG-IRDERVHQGMVSITEVEVSGDLQHCKIFVSIYGEDA 61
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
V+ L ++RG +GR L +R PE+ F+ D ++ + L+ +
Sbjct: 62 DKQNVLEGLKAASGYLRGELGRRL-QMRRAPEVVFQLDRGIEKGTTVLHLLNRLE 115
>gi|126664890|ref|ZP_01735874.1| ribosome-binding factor A [Marinobacter sp. ELB17]
gi|126631216|gb|EBA01830.1| ribosome-binding factor A [Marinobacter sp. ELB17]
Length = 152
Score = 116 bits (293), Expect = 8e-25, Method: Composition-based stats.
Identities = 34/132 (25%), Positives = 63/132 (47%), Gaps = 16/132 (12%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
+ R R+G++++ L +I E +D + +I+++ V +S DL A +Y+SL
Sbjct: 2 AREFSRIDRIGDQMQRELAQLIQR-EIKDPRVG--MITVNAVKVSRDLGYADIYVSLLTT 58
Query: 66 V-------SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
++ LN F+RG++GR+++ LR VP LRF +D +L+ L+
Sbjct: 59 EELGAESPEVKESLAVLNKASGFLRGQVGRAMK-LRVVPLLRFHFDELQGYSRRLDGLIR 117
Query: 119 -----LPKIPVA 125
P +
Sbjct: 118 KAVGDQPAVSDD 129
>gi|153812991|ref|ZP_01965659.1| hypothetical protein RUMOBE_03398 [Ruminococcus obeum ATCC 29174]
gi|149830938|gb|EDM86028.1| hypothetical protein RUMOBE_03398 [Ruminococcus obeum ATCC 29174]
Length = 127
Score = 116 bits (292), Expect = 9e-25, Method: Composition-based stats.
Identities = 35/114 (30%), Positives = 59/114 (51%), Gaps = 4/114 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
KNS + R+ EV+ L +I NE +D I + S+ V ++ DL+ +IS+ +
Sbjct: 3 KNSIKNTRINGEVQKELSTII-RNEVKDPRIHP-MTSVMAVEVAPDLKTCKAFISVLGNK 60
Query: 67 S-PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
D I LN +IR ++ ++L NLR PE+RF D S++ ++ L+
Sbjct: 61 EAKDATIQGLNKAEGYIRRQLAKNL-NLRNTPEIRFILDESIEYGVNMSKLIDD 113
>gi|261879008|ref|ZP_06005435.1| ribosome-binding factor A [Prevotella bergensis DSM 17361]
gi|270334392|gb|EFA45178.1| ribosome-binding factor A [Prevotella bergensis DSM 17361]
Length = 111
Score = 116 bits (292), Expect = 9e-25, Method: Composition-based stats.
Identities = 31/108 (28%), Positives = 56/108 (51%), Gaps = 4/108 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
R +V ++ L + + Q R + ++S+++V +S DL + T Y+S+
Sbjct: 5 RQNKVSRLLQKELAEIFQS---QTRQMKGVLVSVTKVRISPDLSICTAYLSIFPSEKGSE 61
Query: 71 VISALNCNIKFIRGRIGRSLRN-LRYVPELRFRYDTSLQSYWKLNALM 117
++ + N K IR +G+ +RN LR +PELRF D SL ++ L+
Sbjct: 62 LLDNIKANEKTIRYELGKRVRNQLRIIPELRFFIDDSLDYSEHIDELL 109
>gi|326794271|ref|YP_004312091.1| ribosome-binding factor A [Marinomonas mediterranea MMB-1]
gi|326545035|gb|ADZ90255.1| Ribosome-binding factor A [Marinomonas mediterranea MMB-1]
Length = 128
Score = 116 bits (292), Expect = 9e-25, Method: Composition-based stats.
Identities = 34/124 (27%), Positives = 64/124 (51%), Gaps = 9/124 (7%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL- 64
R R+G++++ L +I E +D + ++I+EV ++ DL A VY ++
Sbjct: 2 AGEFSRTSRIGDQLQKELASLI-QFEVKDPRLG--FVTINEVRVAKDLGYADVYYTVLGI 58
Query: 65 DVSPDRVIS---ALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
D P ++ AL+ F+R R+ + ++ LR +P LRF YD S+ + +++AL+
Sbjct: 59 DEDPKKLADNQVALDSAKSFLRHRLSKEVK-LRVMPHLRFHYDQSVVNGARMSALI-DDA 116
Query: 122 IPVA 125
I
Sbjct: 117 IRKD 120
>gi|223984476|ref|ZP_03634609.1| hypothetical protein HOLDEFILI_01903 [Holdemania filiformis DSM
12042]
gi|223963547|gb|EEF67926.1| hypothetical protein HOLDEFILI_01903 [Holdemania filiformis DSM
12042]
Length = 114
Score = 116 bits (292), Expect = 9e-25, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 58/112 (51%), Gaps = 5/112 (4%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
S + RV + + + +I +D + ++I++V ++ D AT+Y+S
Sbjct: 2 SVKQERVAQIILKDVTDII-QFSLKDPSVG--FVTITDVQVTNDYSYATIYVSFLGKEER 58
Query: 69 DRV-ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ + ALN FIR +G+ L ++R VP+L F+ D SL+ ++++++
Sbjct: 59 KQAGLKALNRAKGFIRSELGKRL-SIRKVPDLIFKLDDSLEKGERIDSIISQ 109
>gi|225374834|ref|ZP_03752055.1| hypothetical protein ROSEINA2194_00455 [Roseburia inulinivorans DSM
16841]
gi|225213295|gb|EEG95649.1| hypothetical protein ROSEINA2194_00455 [Roseburia inulinivorans DSM
16841]
Length = 124
Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats.
Identities = 32/114 (28%), Positives = 56/114 (49%), Gaps = 4/114 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
KNS + R+ EV+ L +I E +D I+ + S+ V ++ DL+ YIS+ D
Sbjct: 3 KNSIKNTRINGEVQKELSNII-RGEIKDPRINP-LTSVVAVEVAPDLKTCKAYISVLGDE 60
Query: 67 S-PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
I L +IR + +S+ NLR P++ F D S++ K++ ++
Sbjct: 61 KSQQDTIKGLKSAEGYIRTMLAKSI-NLRNTPQITFILDQSIEYGVKMSKMIDD 113
>gi|293400736|ref|ZP_06644881.1| ribosome-binding factor A [Erysipelotrichaceae bacterium 5_2_54FAA]
gi|291305762|gb|EFE47006.1| ribosome-binding factor A [Erysipelotrichaceae bacterium 5_2_54FAA]
Length = 114
Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats.
Identities = 29/108 (26%), Positives = 56/108 (51%), Gaps = 5/108 (4%)
Query: 12 ALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRV 71
A ++ ++ + +I E +D I I+I++V ++ DL +A +Y+S + +
Sbjct: 5 AEKIAGIIQKEVSEII-QFELKDPKIG--FITITDVTVTNDLSIAKIYVSFLGQKAREEA 61
Query: 72 -ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ ALN + FIR + + L +R VPEL F D +L+ K+ ++
Sbjct: 62 GMKALNRSKGFIRSALAKRL-TMRKVPELHFLIDDALERGNKIEKIIS 108
>gi|238927227|ref|ZP_04658987.1| ribosome-binding factor A [Selenomonas flueggei ATCC 43531]
gi|238885009|gb|EEQ48647.1| ribosome-binding factor A [Selenomonas flueggei ATCC 43531]
Length = 118
Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 59/118 (50%), Gaps = 5/118 (4%)
Query: 12 ALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPD-R 70
+V E ++ + +I N E +D I ++++ V + DLR A +Y+S+ D
Sbjct: 1 MEKVQELMKQEISDIIFN-ELKDPRIG--FVTVTSVACTEDLREAKIYVSVMGDEKKARD 57
Query: 71 VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALEK 128
++ LN ++ F+R IG+ +R LR+ PE+ F DTSL + L+ EK
Sbjct: 58 TLNGLNSSLGFVRREIGKRIR-LRFTPEISFALDTSLNYSDHIQRLLNEIHEDQPQEK 114
>gi|310658993|ref|YP_003936714.1| 30S ribosome binding factor [Clostridium sticklandii DSM 519]
gi|308825771|emb|CBH21809.1| 30s ribosome binding factor [Clostridium sticklandii]
Length = 120
Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats.
Identities = 37/118 (31%), Positives = 64/118 (54%), Gaps = 4/118 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLI--SRDVISISEVCMSVDLRVATVYISLPL 64
+ R R+GEE++ + ++ + +D I SR +ISI+ V + DL+ A +YIS+ L
Sbjct: 1 MSYERTRRIGEEIKKTITELLRDQRIKDIRIIDSRSLISITTVDVVRDLKYAYIYISV-L 59
Query: 65 DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
D+V+ FIR +G+ ++ LRY PEL F+ D S++ ++ L+ I
Sbjct: 60 GNDSDKVLEGFKSASGFIRKELGKDIK-LRYTPELVFKIDDSIERGVNMSKLINDLNI 116
>gi|282848831|ref|ZP_06258224.1| ribosome-binding factor A [Veillonella parvula ATCC 17745]
gi|294793602|ref|ZP_06758739.1| ribosome-binding factor A [Veillonella sp. 3_1_44]
gi|282581485|gb|EFB86875.1| ribosome-binding factor A [Veillonella parvula ATCC 17745]
gi|294455172|gb|EFG23544.1| ribosome-binding factor A [Veillonella sp. 3_1_44]
Length = 118
Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 60/118 (50%), Gaps = 7/118 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-DVSPD 69
R ++ E ++ + +++ +D I +I++V ++ DLR AT+Y+SL D +
Sbjct: 5 RVRKLQEFIKQEVSQMLMRG-LKDPRIG--FTTITDVHVTGDLREATIYVSLFGSDKEKE 61
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALE 127
+ AL IR +G+ L+ LR++P + F DTSL + +L+ +I E
Sbjct: 62 DTLIALKHAAGHIRTELGKVLK-LRHIPSITFDKDTSLDYSMHIESLLN--EIKKDEE 116
>gi|311695957|gb|ADP98830.1| ribosome-binding factor A [marine bacterium HP15]
Length = 140
Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 65/120 (54%), Gaps = 11/120 (9%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
P+ R R+G++++ L +I E +D + +++++ V +S DL A +Y+SL
Sbjct: 2 PREFSRIDRIGDQMQRELAQLIQR-EVKDPRVG--MVTVNAVKVSRDLGYADIYVSLLST 58
Query: 66 V-------SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
I+ LN F+RG++GR+++ LR VP+LRF +DT K+++L+
Sbjct: 59 EELTEESPEVRESIAVLNKASGFLRGQVGRAMK-LRVVPQLRFHFDTLQGYSRKMDSLIR 117
>gi|85712991|ref|ZP_01044029.1| ribosome-binding factor A [Idiomarina baltica OS145]
gi|85693160|gb|EAQ31120.1| ribosome-binding factor A [Idiomarina baltica OS145]
Length = 125
Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats.
Identities = 32/114 (28%), Positives = 61/114 (53%), Gaps = 6/114 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
+ R RV +++ + +IL E +D +S ++++S+V +S DL A V+++ D
Sbjct: 2 AQEFSRTERVRHQLQREIA-MILQREVKDPRVS--MVTVSDVEVSRDLAYAKVFVTFLHD 58
Query: 66 VSPD--RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ LN FIR +G+ ++ R VPEL+F++D SL +++ L+
Sbjct: 59 DDDQVKAGLKVLNQASGFIRSLLGKRIKA-RVVPELKFQHDGSLNEGIRMSRLV 111
>gi|15895079|ref|NP_348428.1| ribosome-binding factor A [Clostridium acetobutylicum ATCC 824]
gi|20978633|sp|Q97I50|RBFA_CLOAB RecName: Full=Ribosome-binding factor A
gi|15024776|gb|AAK79768.1|AE007689_6 Ribosome-binding factor A [Clostridium acetobutylicum ATCC 824]
gi|325509217|gb|ADZ20853.1| ribosome-binding factor A [Clostridium acetobutylicum EA 2018]
Length = 121
Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats.
Identities = 35/112 (31%), Positives = 62/112 (55%), Gaps = 4/112 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV-SPD 69
RA R+ EEV+ A+ +I N+ +D + +IS+ +V ++ DLR A Y+S+ D
Sbjct: 5 RAGRINEEVKKAISSII-QNDIRDPRL-TSMISVIKVDVTKDLRYAKAYVSILGDEAKKK 62
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+ L + FIR +G +++ LRY PE+ DTS++ ++A++ K
Sbjct: 63 ETMDILKKSESFIRKELGYAVK-LRYTPEVIIELDTSIEKGMHIDAILEKIK 113
>gi|300725871|ref|ZP_07059335.1| ribosome-binding factor A [Prevotella bryantii B14]
gi|299776859|gb|EFI73405.1| ribosome-binding factor A [Prevotella bryantii B14]
Length = 111
Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats.
Identities = 31/108 (28%), Positives = 58/108 (53%), Gaps = 4/108 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
R R+ ++ L + E + R + ++S++ V +S DL + T Y+S+ +
Sbjct: 5 RQNRISRLLQKELSLIF---ETETRKMRGVMVSVTRVKVSPDLGICTAYLSIFPSEKGEE 61
Query: 71 VISALNCNIKFIRGRIGRSL-RNLRYVPELRFRYDTSLQSYWKLNALM 117
+++ +N N K IR +G+ + + LR VPELRF D SL +++ L+
Sbjct: 62 LMANINSNEKSIRYELGKRVGKQLRIVPELRFFIDDSLDYIERIDELL 109
>gi|291523278|emb|CBK81571.1| ribosome-binding factor A [Coprococcus catus GD/7]
Length = 130
Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats.
Identities = 36/114 (31%), Positives = 58/114 (50%), Gaps = 4/114 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
KNS + R+ EV+ L +I E +D IS + S+ V ++ DL+ YIS+ D
Sbjct: 3 KNSIKNTRINGEVQKELSRIISR-EIKDPRISP-MTSVVAVEVAPDLKQCKAYISVLGDK 60
Query: 67 S-PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
D ++ L I FIR + R++ NLR PE+ F D S++ ++ L+
Sbjct: 61 DAQDATLAGLKSAIGFIRRELARTV-NLRNTPEIHFVLDQSIEYGVNMSKLIDD 113
>gi|86607701|ref|YP_476463.1| ribosome-binding factor A [Synechococcus sp. JA-2-3B'a(2-13)]
gi|123504067|sp|Q2JPS6|RBFA_SYNJB RecName: Full=Ribosome-binding factor A
gi|86556243|gb|ABD01200.1| ribosome-binding factor A [Synechococcus sp. JA-2-3B'a(2-13)]
Length = 144
Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats.
Identities = 33/111 (29%), Positives = 61/111 (54%), Gaps = 3/111 (2%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPD 69
RR RV E ++ + ++L +E +D + ++SI +V +S DL+ A +++S+ D +
Sbjct: 5 RRVARVAELIKREVSQILL-SEIKDDRVGAGMVSIVDVEVSNDLQNARIFVSIYGDETAQ 63
Query: 70 -RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ + L F+R IG+ L +LR VP + F D SL+ ++ AL+
Sbjct: 64 HQAMEGLAAATPFVRREIGQRL-SLRRVPTVVFLQDRSLERGSRVLALLNQ 113
>gi|120556254|ref|YP_960605.1| ribosome-binding factor A [Marinobacter aquaeolei VT8]
gi|166218447|sp|A1U5Z9|RBFA_MARAV RecName: Full=Ribosome-binding factor A
gi|120326103|gb|ABM20418.1| ribosome-binding factor A [Marinobacter aquaeolei VT8]
Length = 143
Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats.
Identities = 36/132 (27%), Positives = 66/132 (50%), Gaps = 16/132 (12%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
+ R R+G++++ L +I E +D + ++++++V +S DL A +YISL
Sbjct: 2 AREYSRVDRIGDQMQRELAQLIQR-EVKDPRVG--MVTVNDVKVSRDLGYADIYISLLST 58
Query: 66 V-------SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
++ LN F+RG++GR+++ LR VP LRF +D L K++ L+
Sbjct: 59 EELTEDSPEVQDSLTVLNKASGFLRGQVGRAMK-LRVVPHLRFHFDKLLGQSRKMDRLIR 117
Query: 119 L-----PKIPVA 125
P +P
Sbjct: 118 EAVGDKPAVPRD 129
>gi|310828064|ref|YP_003960421.1| hypothetical protein ELI_2476 [Eubacterium limosum KIST612]
gi|308739798|gb|ADO37458.1| hypothetical protein ELI_2476 [Eubacterium limosum KIST612]
Length = 130
Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats.
Identities = 29/114 (25%), Positives = 62/114 (54%), Gaps = 3/114 (2%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-DVS 67
S R ++ +++ L +I+ + +D +RD +SI+ V + DL+ ATVY+S+
Sbjct: 3 SHRIEKINGQIQRELS-LIIQQKMKDSRFNRDTLSITHVKAAPDLKTATVYVSIFGTSEE 61
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+ V+ L+ F+R +G+ L+ + +P L F+ D S++ +++++ K
Sbjct: 62 KEEVLGLLDNAKGFLRANLGKVLK-VHSIPALTFKLDDSVEYGMHIDSILASLK 114
>gi|269797848|ref|YP_003311748.1| ribosome-binding factor A [Veillonella parvula DSM 2008]
gi|269094477|gb|ACZ24468.1| ribosome-binding factor A [Veillonella parvula DSM 2008]
Length = 118
Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 59/118 (50%), Gaps = 7/118 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-DVSPD 69
R ++ E ++ + +++ +D I +I++V ++ DLR AT+Y+SL D
Sbjct: 5 RVRKLQEFIKQEVSQMLMRG-LKDPRIG--FTTITDVHVTGDLREATIYVSLFGSDKEKQ 61
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALE 127
+ AL IR +G+ L+ LR++P + F DTSL + +L+ +I E
Sbjct: 62 DTLIALKHAAGHIRTELGKVLK-LRHIPSITFDKDTSLDYSMHIESLLN--EIKKDEE 116
>gi|288928933|ref|ZP_06422779.1| ribosome-binding factor A [Prevotella sp. oral taxon 317 str.
F0108]
gi|288329917|gb|EFC68502.1| ribosome-binding factor A [Prevotella sp. oral taxon 317 str.
F0108]
Length = 111
Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats.
Identities = 29/108 (26%), Positives = 55/108 (50%), Gaps = 4/108 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
R R+ ++ L + + Q R++ ++S++ +S DL + T Y+S+ +
Sbjct: 5 RQNRIARLLQKELSLIFQS---QTRMMHGVMVSVTRTRVSPDLSICTAYLSVFPSEKGEE 61
Query: 71 VISALNCNIKFIRGRIGRSLRN-LRYVPELRFRYDTSLQSYWKLNALM 117
++ + N K IR +G + N LR +PELRF D SL +++ L+
Sbjct: 62 LLKNIESNTKTIRYELGTRVHNQLRIIPELRFFIDDSLDYIERIDELL 109
>gi|134095609|ref|YP_001100684.1| ribosome-binding factor A [Herminiimonas arsenicoxydans]
gi|172044150|sp|A4G7S6|RBFA_HERAR RecName: Full=Ribosome-binding factor A
gi|133739512|emb|CAL62563.1| ribosome-binding factor A [Herminiimonas arsenicoxydans]
Length = 128
Score = 115 bits (290), Expect = 1e-24, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 63/119 (52%), Gaps = 6/119 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPD- 69
R LRV ++++ L ++ E +D + +I+I+EV ++ D A V+ ++ D +
Sbjct: 11 RGLRVADQIQRDLSEIVAF-ELKDPRVG--MITITEVQVTPDYAHAKVFFTMLSDNKDEI 67
Query: 70 -RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALE 127
+S L+ +IRG++GR L ++ +PEL F +DTS +++ L+ A +
Sbjct: 68 KNTVSGLSAASGYIRGQLGRRL-SIHTLPELHFVHDTSTARGIEMSKLIDEANATRAKD 125
>gi|330504826|ref|YP_004381695.1| ribosome-binding factor A [Pseudomonas mendocina NK-01]
gi|328919112|gb|AEB59943.1| ribosome-binding factor A [Pseudomonas mendocina NK-01]
Length = 129
Score = 115 bits (290), Expect = 1e-24, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 68/118 (57%), Gaps = 8/118 (6%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL- 64
K+ R R+G++++ L V++ E +D + +++I+ V +S DL A V+I++
Sbjct: 2 AKDYSRTQRIGDQMQRELA-VLIQREIKDPRLG--LVTITAVDVSRDLSHAKVFITVMGK 58
Query: 65 DVSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
D +++ + L ++R +G+S++ +R +P+L F+YD S++ +L+AL+
Sbjct: 59 DDDAEQIKLNLEILGEAAGYLRMLLGKSMK-VRTIPQLHFQYDASIRRGAELSALIER 115
>gi|253580819|ref|ZP_04858082.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251847889|gb|EES75856.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 131
Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats.
Identities = 36/114 (31%), Positives = 59/114 (51%), Gaps = 4/114 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
KNS + R+ EV+ L +I NE +D I + S+ V ++ DL+ YIS+ +
Sbjct: 3 KNSIKNTRINGEVQKELSTII-RNEIKDPRIHP-MTSVMAVEVAPDLKTCRAYISVLGEK 60
Query: 67 S-PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ I LN +IR ++ R+L NLR PE+RF D S++ ++ L+
Sbjct: 61 EAKEATIKGLNSAEGYIRRQLARNL-NLRNTPEIRFILDESIEYGVNMSKLIDD 113
>gi|295110272|emb|CBL24225.1| ribosome-binding factor A [Ruminococcus obeum A2-162]
Length = 127
Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats.
Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 4/114 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
KNS + R+ EV+ L +I E +D I + S+ V ++ DL+ YIS+ +
Sbjct: 3 KNSIKNTRINGEVQKELSSII-RGEIKDPRIHP-MTSVMAVEVAPDLKTCRAYISVLGNQ 60
Query: 67 S-PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ I LN +IR ++ R+L NLR PE+RF D S++ ++ L+
Sbjct: 61 EAKEATIRGLNSAEGYIRRQLARNL-NLRNTPEIRFILDESIEYGVNMSKLIDD 113
>gi|226951830|ref|ZP_03822294.1| ribosome-binding factor A [Acinetobacter sp. ATCC 27244]
gi|294649084|ref|ZP_06726527.1| ribosome-binding factor A [Acinetobacter haemolyticus ATCC 19194]
gi|226837370|gb|EEH69753.1| ribosome-binding factor A [Acinetobacter sp. ATCC 27244]
gi|292825030|gb|EFF83790.1| ribosome-binding factor A [Acinetobacter haemolyticus ATCC 19194]
Length = 132
Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats.
Identities = 31/133 (23%), Positives = 57/133 (42%), Gaps = 16/133 (12%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL--- 64
S+R R+ + V+ L +I E +D + +++IS V +S D+ A VY+++
Sbjct: 3 GSQRLKRMADSVQRELSELI-RQELKDPRLGG-LVTISAVKVSADMGYAEVYVTVMGREL 60
Query: 65 -----DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ + + LN F+R + R ++ R P LRF YD + + L+
Sbjct: 61 GDDQSEAANKETLDVLNKASGFLRHELSRRIKT-RITPRLRFHYDKTNAYGNYMFGLIAE 119
Query: 120 -----PKIPVALE 127
P+ E
Sbjct: 120 AVKDLPEQEQDKE 132
>gi|296113975|ref|YP_003627913.1| ribosome-binding factor A [Moraxella catarrhalis RH4]
gi|295921669|gb|ADG62020.1| ribosome-binding factor A [Moraxella catarrhalis RH4]
gi|326559312|gb|EGE09739.1| ribosome-binding factor A [Moraxella catarrhalis 7169]
gi|326564312|gb|EGE14542.1| ribosome-binding factor A [Moraxella catarrhalis 103P14B1]
gi|326565078|gb|EGE15271.1| ribosome-binding factor A [Moraxella catarrhalis 46P47B1]
gi|326567246|gb|EGE17366.1| ribosome-binding factor A [Moraxella catarrhalis 12P80B1]
gi|326568249|gb|EGE18331.1| ribosome-binding factor A [Moraxella catarrhalis BC8]
gi|326569950|gb|EGE19997.1| ribosome-binding factor A [Moraxella catarrhalis BC1]
gi|326570028|gb|EGE20074.1| ribosome-binding factor A [Moraxella catarrhalis BC7]
gi|326572885|gb|EGE22870.1| ribosome-binding factor A [Moraxella catarrhalis CO72]
gi|326573667|gb|EGE23625.1| ribosome-binding factor A [Moraxella catarrhalis O35E]
gi|326574711|gb|EGE24647.1| ribosome-binding factor A [Moraxella catarrhalis 101P30B1]
Length = 141
Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 57/117 (48%), Gaps = 11/117 (9%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP----- 63
++R R+ ++++ L +++ +E D + ++IS V +S DL A VY+++
Sbjct: 2 NQRLQRLADQIQRTLA-ILIRDEINDPRL-TGFVTISSVKVSPDLGYADVYVTILEPSQD 59
Query: 64 ---LDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ + + LN F+R + R+++ R P LRF YD ++ +L+
Sbjct: 60 GGMNSEAHAQSLKVLNTAAGFLRTELARTMKT-RTTPRLRFHYDEVTAHGNRMMSLV 115
>gi|189459725|ref|ZP_03008510.1| hypothetical protein BACCOP_00353 [Bacteroides coprocola DSM 17136]
gi|189433572|gb|EDV02557.1| hypothetical protein BACCOP_00353 [Bacteroides coprocola DSM 17136]
Length = 111
Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats.
Identities = 30/112 (26%), Positives = 58/112 (51%), Gaps = 4/112 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
+ R ++ ++ L + L Q + + ++S+S V +S D+ A VY+S+
Sbjct: 1 METTRQNKIARLIQKELSDIFL---LQTKAMHGVLVSVSVVRISPDMSYARVYLSVFPSE 57
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRN-LRYVPELRFRYDTSLQSYWKLNALM 117
+ ++ +N N+K IR +G +R+ LR +PEL+F D SL ++ L+
Sbjct: 58 RSEEIVKNINDNMKSIRFELGNRVRHQLRIIPELKFFVDDSLDYAAHIDELL 109
>gi|113953283|ref|YP_731751.1| ribosome-binding factor A [Synechococcus sp. CC9311]
gi|123132376|sp|Q0I721|RBFA_SYNS3 RecName: Full=Ribosome-binding factor A
gi|113880634|gb|ABI45592.1| ribosome-binding factor A [Synechococcus sp. CC9311]
Length = 134
Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 58/119 (48%), Gaps = 3/119 (2%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV- 66
RR RV +R ++++ +D + + ++SI+EV +S DL+ +++S+ +
Sbjct: 3 QGRRVERVAALIRKETSELLIHG-IRDERVHQGMVSITEVEVSGDLQHCRIFVSVFGEQA 61
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
D V+ L F+RG +GR L +R PE+ F+ D ++ + L+ +
Sbjct: 62 QKDEVMDGLEAARGFLRGELGRRL-QMRRAPEIVFKLDLGIEKGTTVLHLLGELERERD 119
>gi|291541936|emb|CBL15046.1| ribosome-binding factor A [Ruminococcus bromii L2-63]
Length = 125
Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats.
Identities = 33/123 (26%), Positives = 54/123 (43%), Gaps = 4/123 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
S R R E+++ L + E +D + + ISI V ++ DL TV IS +
Sbjct: 1 MGSHRIERTTEDIKRELTAIF--RELKDPRVQQAFISIVRVEVTNDLSYCTVQISAIEGL 58
Query: 67 SP-DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
+ L FIR +G L +LR+VPEL F S++ ++ ++ I
Sbjct: 59 DRAKEAVKGLKSASGFIRRELGHRL-HLRHVPELIFHATDSIEYSANISRILNSLDIKED 117
Query: 126 LEK 128
E+
Sbjct: 118 EEE 120
>gi|303229587|ref|ZP_07316375.1| ribosome-binding factor A [Veillonella atypica ACS-134-V-Col7a]
gi|302515712|gb|EFL57666.1| ribosome-binding factor A [Veillonella atypica ACS-134-V-Col7a]
Length = 118
Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 60/118 (50%), Gaps = 7/118 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-DVSPD 69
R ++ E ++ + +++ +D I ++++V ++ DLR AT+Y+SL D +
Sbjct: 5 RVRKLQEFIKQEVSQMLMRG-LKDPRIG--FTTVTDVHVTGDLREATIYVSLFGSDKEKE 61
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALE 127
+ AL +R +G+ L+ LR++P + F DTSL + +L+ +I E
Sbjct: 62 DTLIALKHASGHVRTELGKVLK-LRHIPTITFDKDTSLDYSMHIESLLN--EIKKDEE 116
>gi|54295601|ref|YP_128016.1| ribosome-binding factor A [Legionella pneumophila str. Lens]
gi|296108415|ref|YP_003620116.1| ribosome-binding factor A [Legionella pneumophila 2300/99 Alcoy]
gi|61214769|sp|Q5WT37|RBFA_LEGPL RecName: Full=Ribosome-binding factor A
gi|53755433|emb|CAH16929.1| Ribosome-binding factor A [Legionella pneumophila str. Lens]
gi|295650317|gb|ADG26164.1| ribosome-binding factor A [Legionella pneumophila 2300/99 Alcoy]
Length = 123
Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats.
Identities = 33/110 (30%), Positives = 59/110 (53%), Gaps = 4/110 (3%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS 67
N +R R+ E ++ L +I E +D + ++IS V ++ DL A +Y ++ L+
Sbjct: 4 NFKRTDRIAEMIQRKLALIIPQ-EIKDPRLKG-FVTISAVKVAADLGHAKIYFTV-LNED 60
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
V + LN ++R + RS+ LR VP+L F YD S++ +L+ L+
Sbjct: 61 KSVVTNILNGAASYLRSALARSI-TLRTVPQLHFIYDESIEYGQRLSRLI 109
>gi|206900907|ref|YP_002250934.1| ribosome-binding factor A [Dictyoglomus thermophilum H-6-12]
gi|226723598|sp|B5YEH6|RBFA_DICT6 RecName: Full=Ribosome-binding factor A
gi|206740010|gb|ACI19068.1| ribosome-binding factor A [Dictyoglomus thermophilum H-6-12]
Length = 120
Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats.
Identities = 33/105 (31%), Positives = 57/105 (54%), Gaps = 4/105 (3%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDVSP 68
+R R+ +R + ++L +D IS ++ I+EV MS DLR A +Y+S+ +
Sbjct: 3 QRQERLSALIREEISEILLRR-VKDPRISSFLV-ITEVKMSKDLRYAHIYVSVYGSEEEK 60
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKL 113
+ + L FIR +G+ LR +R+VPE+ F D SL+ ++
Sbjct: 61 KQTMQGLESAKGFIRSELGKDLR-IRFVPEIFFELDDSLEKGDRI 104
>gi|21231943|ref|NP_637860.1| ribosome-binding factor A [Xanthomonas campestris pv. campestris
str. ATCC 33913]
gi|66767930|ref|YP_242692.1| ribosome-binding factor A [Xanthomonas campestris pv. campestris
str. 8004]
gi|188991046|ref|YP_001903056.1| ribosome-binding factor A [Xanthomonas campestris pv. campestris
str. B100]
gi|21113672|gb|AAM41784.1| ribosomal-binding factor A [Xanthomonas campestris pv. campestris
str. ATCC 33913]
gi|66573262|gb|AAY48672.1| ribosomal-binding factor A [Xanthomonas campestris pv. campestris
str. 8004]
gi|167732806|emb|CAP51000.1| ribosomal-binding factor A [Xanthomonas campestris pv. campestris]
Length = 132
Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats.
Identities = 31/126 (24%), Positives = 59/126 (46%), Gaps = 9/126 (7%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
K+ R RV +VR L ++ +D + +S+S+V +S DL A V+++
Sbjct: 6 KSFHRTDRVSAQVRRDLGTIVH-AAVRDHGLPS--VSVSDVEISRDLAHAKVFVTALQQE 62
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL-----PK 121
+ L +R ++ R+++ LR+VPEL F YD S+ +++ L+ P+
Sbjct: 63 RSAEAVKGLKEIAGQLRTQLARAMK-LRHVPELHFHYDDSVDRGERIDNLLRDLDDIGPE 121
Query: 122 IPVALE 127
+
Sbjct: 122 AAPDAQ 127
>gi|291562549|emb|CBL41365.1| ribosome-binding factor A [butyrate-producing bacterium SS3/4]
Length = 131
Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats.
Identities = 32/112 (28%), Positives = 60/112 (53%), Gaps = 4/112 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
KNS + +R+ EV+ AL +I +E +D + + S+ +V ++ DL++ YIS+ D
Sbjct: 3 KNSVKNIRINGEVQKALSEII-RSELKDPRVHP-MTSVVQVSVTPDLKICKAYISVLADE 60
Query: 67 SP-DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
I L FIR ++ + + NLR P++ F D S++ +++ L+
Sbjct: 61 EQAKDTIRGLKSAEGFIRTQLAKKV-NLRNTPQIFFVLDQSIEYGVRMSKLI 111
>gi|291613950|ref|YP_003524107.1| ribosome-binding factor A [Sideroxydans lithotrophicus ES-1]
gi|291584062|gb|ADE11720.1| ribosome-binding factor A [Sideroxydans lithotrophicus ES-1]
Length = 118
Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats.
Identities = 28/114 (24%), Positives = 58/114 (50%), Gaps = 5/114 (4%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K+ R R+ E+++ L +I E +D + + ++++ V ++ D A V+ +
Sbjct: 2 AKDFARTDRIAEQIQRELAELI-RLEVKDPRVRK--VTLTGVTVTNDHAHAKVFYTSLDG 58
Query: 66 VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
SPD ++ L F+R ++ +++ LR P+L F YD S++ L+ L+
Sbjct: 59 DSPDLLL-GLERAAGFLRSQLAHAMK-LRITPQLHFVYDASVERGAHLSQLIDQ 110
>gi|304384251|ref|ZP_07366662.1| ribosome-binding factor A [Prevotella marshii DSM 16973]
gi|304334567|gb|EFM00849.1| ribosome-binding factor A [Prevotella marshii DSM 16973]
Length = 154
Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 58/121 (47%), Gaps = 4/121 (3%)
Query: 2 KNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS 61
K + R R+ ++ L + Q R + ++S++ +S DL + T Y+S
Sbjct: 26 KKEITMQETRQNRIARLLQKELSLIFQ---TQTRSMHGVMVSVTRCRISPDLSICTGYLS 82
Query: 62 LPLDVSPDRVISALNCNIKFIRGRIGRSLRN-LRYVPELRFRYDTSLQSYWKLNALMCLP 120
+ + ++ +N N + IR +G +RN LR +PE+RF D SL K++ L+
Sbjct: 83 IFPSERGEEILKNINANAQTIRYDLGTRVRNQLRIIPEVRFFLDDSLDYIEKIDRLLEKD 142
Query: 121 K 121
K
Sbjct: 143 K 143
>gi|239626261|ref|ZP_04669292.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239520491|gb|EEQ60357.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 133
Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 6/121 (4%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
KNS + R+ EV L +I +D I + S+ V ++ DL+ YIS+ +
Sbjct: 3 KNSIKNTRINAEVLRELSEII-RTGIKDPRIHP-MTSVVSVEVTPDLKYCRAYISVLGNE 60
Query: 67 SP-DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
I L ++R + R + NLR PEL+F D S++ ++ L+ ++
Sbjct: 61 DAAKATIEGLKSAEGYVRRELARRI-NLRNTPELKFILDQSIEYGVNMSKLI--DEVTKD 117
Query: 126 L 126
L
Sbjct: 118 L 118
>gi|159902668|ref|YP_001550012.1| ribosome-binding factor A [Prochlorococcus marinus str. MIT 9211]
gi|238687122|sp|A9BCX0|RBFA_PROM4 RecName: Full=Ribosome-binding factor A
gi|159887844|gb|ABX08058.1| Ribosome-binding factor A [Prochlorococcus marinus str. MIT 9211]
Length = 130
Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats.
Identities = 28/109 (25%), Positives = 57/109 (52%), Gaps = 3/109 (2%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-DVSP 68
RR +V +R + ++L+ +D ++ +++I+EV +S DL+ +++S+ D
Sbjct: 5 RRVEKVSALIRKEMSQLLLDG-IRDERVASSMVTITEVEVSGDLQHCKIFVSIFGQDPKR 63
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ S L F+RG +GR L +R PE+ F+ D ++ + L+
Sbjct: 64 EEAFSGLQAASGFLRGELGRRL-QMRRAPEIVFKLDKGMEKGSSVLDLL 111
>gi|297617189|ref|YP_003702348.1| ribosome-binding factor A [Syntrophothermus lipocalidus DSM 12680]
gi|297145026|gb|ADI01783.1| ribosome-binding factor A [Syntrophothermus lipocalidus DSM 12680]
Length = 126
Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats.
Identities = 36/122 (29%), Positives = 60/122 (49%), Gaps = 3/122 (2%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
+SRR R+ EE++ L + +D I +SI+ V +S DL A V++S+ D
Sbjct: 1 MSSRRQERLAEEIKRGLSALFFEG-LKDPGIDPRAVSITRVDVSRDLSYARVHVSVLGDE 59
Query: 67 SP-DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
++AL FIR + L NLR+ PE+ F+ D S++ ++ A++ K
Sbjct: 60 KKCRDTMAALERARGFIRSVLAGEL-NLRHAPEIVFQMDKSIEHGVRIAAILNELKAQEK 118
Query: 126 LE 127
E
Sbjct: 119 RE 120
>gi|116073898|ref|ZP_01471160.1| ribosome-binding factor A [Synechococcus sp. RS9916]
gi|116069203|gb|EAU74955.1| ribosome-binding factor A [Synechococcus sp. RS9916]
Length = 133
Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 58/119 (48%), Gaps = 3/119 (2%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS 67
RR RV +R +++N +D + + ++SI+EV +S DL+ +++S+ +
Sbjct: 3 PGRRVERVAALIRRETSELLING-IRDERVHQGMVSITEVEVSGDLQHCKIFVSIYSEEE 61
Query: 68 P-DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
+V+ L ++RG +GR L +R PE+ F+ D ++ + L+ +
Sbjct: 62 QRQQVLEGLQAASGYLRGELGRRL-QMRRAPEVVFQLDRGIEKGTSVLNLLNRLEDERE 119
>gi|24418643|sp|Q8P7U8|RBFA_XANCP RecName: Full=Ribosome-binding factor A
gi|172046801|sp|Q4UWA1|RBFA_XANC8 RecName: Full=Ribosome-binding factor A
gi|189039669|sp|B0RRB5|RBFA_XANCB RecName: Full=Ribosome-binding factor A
Length = 130
Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats.
Identities = 31/126 (24%), Positives = 59/126 (46%), Gaps = 9/126 (7%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
K+ R RV +VR L ++ +D + +S+S+V +S DL A V+++
Sbjct: 4 KSFHRTDRVSAQVRRDLGTIVH-AAVRDHGLPS--VSVSDVEISRDLAHAKVFVTALQQE 60
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL-----PK 121
+ L +R ++ R+++ LR+VPEL F YD S+ +++ L+ P+
Sbjct: 61 RSAEAVKGLKEIAGQLRTQLARAMK-LRHVPELHFHYDDSVDRGERIDNLLRDLDDIGPE 119
Query: 122 IPVALE 127
+
Sbjct: 120 AAPDAQ 125
>gi|52842970|ref|YP_096769.1| ribosome-binding factor A [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
gi|54298755|ref|YP_125124.1| ribosome-binding factor A [Legionella pneumophila str. Paris]
gi|148361085|ref|YP_001252292.1| ribosome binding factor A [Legionella pneumophila str. Corby]
gi|61214776|sp|Q5X1C4|RBFA_LEGPA RecName: Full=Ribosome-binding factor A
gi|61214803|sp|Q5ZRV5|RBFA_LEGPH RecName: Full=Ribosome-binding factor A
gi|166218446|sp|A5IHU6|RBFA_LEGPC RecName: Full=Ribosome-binding factor A
gi|52630081|gb|AAU28822.1| ribosome binding factor A [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
gi|53752540|emb|CAH13972.1| Ribosome-binding factor A [Legionella pneumophila str. Paris]
gi|148282858|gb|ABQ56946.1| ribosome binding factor A [Legionella pneumophila str. Corby]
gi|307611643|emb|CBX01329.1| ribosome-binding factor A [Legionella pneumophila 130b]
Length = 123
Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats.
Identities = 33/110 (30%), Positives = 59/110 (53%), Gaps = 4/110 (3%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS 67
N +R R+ E ++ L +I E +D + ++IS V ++ DL A +Y ++ L+
Sbjct: 4 NFKRTDRIAEMIQRKLALIIPQ-EIKDPRLKG-FVTISAVKVAADLGHAKIYFTV-LNED 60
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
V + LN ++R + RS+ LR VP+L F YD S++ +L+ L+
Sbjct: 61 KSVVTNILNGAASYLRSALARSI-TLRTVPQLHFIYDESIEYGQRLSRLI 109
>gi|169824463|ref|YP_001692074.1| ribosome-binding factor A [Finegoldia magna ATCC 29328]
gi|302380621|ref|ZP_07269086.1| ribosome-binding factor A [Finegoldia magna ACS-171-V-Col3]
gi|303233702|ref|ZP_07320356.1| ribosome-binding factor A [Finegoldia magna BVS033A4]
gi|259551994|sp|B0S1E4|RBFA_FINM2 RecName: Full=Ribosome-binding factor A
gi|167831268|dbj|BAG08184.1| ribosome-binding factor A [Finegoldia magna ATCC 29328]
gi|302311564|gb|EFK93580.1| ribosome-binding factor A [Finegoldia magna ACS-171-V-Col3]
gi|302495136|gb|EFL54888.1| ribosome-binding factor A [Finegoldia magna BVS033A4]
Length = 121
Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats.
Identities = 31/113 (27%), Positives = 62/113 (54%), Gaps = 3/113 (2%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSP 68
+R R+ E++ + I+N+ +D I + +S++EV ++ DL ATVYI+ + D
Sbjct: 4 KRVRRISSEIKKVISSSIINS-LKDPRIDKLNVSVTEVKVTNDLSFATVYIAVIGDDEKK 62
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+ + LN F++ +IG ++ +LR+VP+L F+ D + + + L+
Sbjct: 63 KQTLEGLNKAKGFLKKQIGENV-DLRHVPQLIFKIDETSEQSMHIENLIKSIH 114
>gi|224025278|ref|ZP_03643644.1| hypothetical protein BACCOPRO_02017 [Bacteroides coprophilus DSM
18228]
gi|224018514|gb|EEF76512.1| hypothetical protein BACCOPRO_02017 [Bacteroides coprophilus DSM
18228]
Length = 111
Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats.
Identities = 30/112 (26%), Positives = 58/112 (51%), Gaps = 4/112 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
+ R ++ ++ L + L Q + + ++S+S V +S D+ A VY+S+
Sbjct: 1 METTRQNKIARLIQKELGDIFL---LQTKAMPGVLVSVSIVRISPDMSYARVYLSVFPSE 57
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRN-LRYVPELRFRYDTSLQSYWKLNALM 117
+ ++ +N N+K IR +G +R+ LR +PEL+F D SL ++ L+
Sbjct: 58 RSEEIVKNINANMKAIRFELGNRVRHQLRIIPELKFFVDDSLDYAAHIDELL 109
>gi|157825722|ref|YP_001493442.1| ribosome-binding factor A [Rickettsia akari str. Hartford]
gi|166219399|sp|A8GNF9|RBFA_RICAH RecName: Full=Ribosome-binding factor A
gi|157799680|gb|ABV74934.1| ribosome-binding factor A [Rickettsia akari str. Hartford]
Length = 129
Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats.
Identities = 30/126 (23%), Positives = 62/126 (49%), Gaps = 2/126 (1%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
MK NS R ++ + AL+ ++ + D + ++I++V ++ DL++A Y
Sbjct: 1 MKKLTKTNSHRQQKLASIINEALIEILRRGKMLDSRLFNCPLTITKVIVTADLKIANCYF 60
Query: 61 SLPLDV-SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ + V++ALN + K IR I + N+++ P++RF YD + K+ L+
Sbjct: 61 LPFNTKLTINEVMNALNNSKKAIRNFITNKI-NVKFSPDIRFHYDHGFDNAIKVEELLKN 119
Query: 120 PKIPVA 125
++
Sbjct: 120 IQVLGD 125
>gi|304310508|ref|YP_003810106.1| Ribosome-binding factor A [gamma proteobacterium HdN1]
gi|301796241|emb|CBL44449.1| Ribosome-binding factor A [gamma proteobacterium HdN1]
Length = 145
Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 62/117 (52%), Gaps = 7/117 (5%)
Query: 5 NPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL 64
+P+ +R R+ ++++ L V+L E D + ++++S V ++ DL A VY+S
Sbjct: 4 SPRGYKRTDRIADQIQRELA-VLLQREISDPRVG--MVTVSGVKVARDLSFADVYVSFMT 60
Query: 65 DVSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ V ++ L F+R + ++++ LR +P LRF +D + + +++L+
Sbjct: 61 LEKAEEVKQALAVLEHASGFLRSMLAKNIK-LRVIPRLRFHFDQVIVTGPHISSLIT 116
>gi|325281252|ref|YP_004253794.1| Ribosome-binding factor A [Odoribacter splanchnicus DSM 20712]
gi|324313061|gb|ADY33614.1| Ribosome-binding factor A [Odoribacter splanchnicus DSM 20712]
Length = 111
Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats.
Identities = 30/112 (26%), Positives = 55/112 (49%), Gaps = 3/112 (2%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
+S R +V ++ L + + ++S++ V +S DL A +Y+S+
Sbjct: 1 MDSIRQNKVARLIQRDLSEMFQQECKE--YTEGAMLSVTAVRVSPDLSYAKIYVSIFPSE 58
Query: 67 SPDRVISALNCNIKFIRGRIGRSL-RNLRYVPELRFRYDTSLQSYWKLNALM 117
+ V+ +L K IR +G+ + + +R VPELRF D SL K++ L+
Sbjct: 59 RVEAVMKSLEEKNKSIRFILGKKVGKQMRIVPELRFFVDDSLDYIDKIDELL 110
>gi|302878490|ref|YP_003847054.1| ribosome-binding factor A [Gallionella capsiferriformans ES-2]
gi|302581279|gb|ADL55290.1| ribosome-binding factor A [Gallionella capsiferriformans ES-2]
Length = 121
Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 59/118 (50%), Gaps = 6/118 (5%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS 67
N R RVG++++ + ++ E D + +++I+ V ++ D A ++ + LD
Sbjct: 3 NFARTDRVGQQMQREIAQ-LVRLEINDPRVK--LVTITGVEVAGDYSHAKIFFTR-LDGK 58
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
L+ F+R R+ RS++ LR +P+L F +D+S++ L+ L+ +
Sbjct: 59 QAEAQEGLDRAAGFLRSRLARSIK-LRIMPQLHFVFDSSVERGSHLSQLI-DKAVASD 114
>gi|50083630|ref|YP_045140.1| ribosome-binding factor A [Acinetobacter sp. ADP1]
gi|61214998|sp|Q6FF39|RBFA_ACIAD RecName: Full=Ribosome-binding factor A
gi|49529606|emb|CAG67318.1| ribosome-binding factor A [Acinetobacter sp. ADP1]
Length = 133
Score = 114 bits (287), Expect = 4e-24, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 11/118 (9%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL--- 64
S+R R+ + V+ L +I E +D + +++IS V +S D+ A VY+++
Sbjct: 3 GSQRLKRMADSVQRELSELI-RQELKDPRLGG-LVTISAVKVSADMGYAEVYVTVMGREL 60
Query: 65 -----DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ + + LN F+R + R ++ R P LRF YD + + L+
Sbjct: 61 GDEQSEAANKETLDVLNKASGFLRHELSRRIKT-RITPRLRFHYDKTNAYGNYMFGLI 117
>gi|282881986|ref|ZP_06290627.1| ribosome-binding factor A [Peptoniphilus lacrimalis 315-B]
gi|300813721|ref|ZP_07094041.1| ribosome-binding factor A [Peptoniphilus sp. oral taxon 836 str.
F0141]
gi|281298016|gb|EFA90471.1| ribosome-binding factor A [Peptoniphilus lacrimalis 315-B]
gi|300512178|gb|EFK39358.1| ribosome-binding factor A [Peptoniphilus sp. oral taxon 836 str.
F0141]
Length = 118
Score = 114 bits (287), Expect = 4e-24, Method: Composition-based stats.
Identities = 35/113 (30%), Positives = 61/113 (53%), Gaps = 4/113 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
+++R ++ EEV+ LM I+ N+ +D I + SIS V ++ DL A VY+S+ D
Sbjct: 1 MDNKRINKISEEVKRCLMD-IVQNKIKDPRIPT-LTSISHVEVTRDLSFAKVYVSIFADD 58
Query: 67 -SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ + L FI+ + R ++ LR +PEL F D S++ K++ L+
Sbjct: 59 IKKQKALQGLESAKGFIKKELAREVK-LRVMPELIFINDDSIEKGLKMDKLIN 110
>gi|77165584|ref|YP_344109.1| ribosome-binding factor A [Nitrosococcus oceani ATCC 19707]
gi|254433845|ref|ZP_05047353.1| ribosome-binding factor A [Nitrosococcus oceani AFC27]
gi|123593841|sp|Q3J9B7|RBFA_NITOC RecName: Full=Ribosome-binding factor A
gi|76883898|gb|ABA58579.1| ribosome-binding factor A [Nitrosococcus oceani ATCC 19707]
gi|207090178|gb|EDZ67449.1| ribosome-binding factor A [Nitrosococcus oceani AFC27]
Length = 127
Score = 114 bits (287), Expect = 4e-24, Method: Composition-based stats.
Identities = 31/123 (25%), Positives = 61/123 (49%), Gaps = 6/123 (4%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL- 64
+ RA RVGE ++ L + E +D + ++++S V +S DLR A Y++
Sbjct: 2 SQEFSRARRVGELLQRELARLF-QEELKDPRVK--LVTVSHVRVSPDLRQAKAYVTFLGK 58
Query: 65 DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPV 124
+ ++ LN F++ + + + LR +P L+F YD S++ +L+AL+ +
Sbjct: 59 EEDTQEQLAVLNKAAGFLQHGLSQRV-ELRVIPRLQFVYDDSIERGRRLSALI-DKAVQK 116
Query: 125 ALE 127
+
Sbjct: 117 ETD 119
>gi|226323227|ref|ZP_03798745.1| hypothetical protein COPCOM_00999 [Coprococcus comes ATCC 27758]
gi|225208417|gb|EEG90771.1| hypothetical protein COPCOM_00999 [Coprococcus comes ATCC 27758]
Length = 123
Score = 114 bits (287), Expect = 4e-24, Method: Composition-based stats.
Identities = 29/123 (23%), Positives = 57/123 (46%), Gaps = 6/123 (4%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
KNS + RV EV+ L ++ +D ++ + S+ V ++ DL+ YIS+ D
Sbjct: 3 KNSIKNTRVNAEVQRELSTIL-RGGIKDPRVAP-MTSVVAVEVAPDLKTCKAYISVLGDE 60
Query: 67 SPD-RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
+ L +IR + +L N+R PE++F D S++ +++ + +
Sbjct: 61 KAQADTLKGLQSAEGYIRRELAHTL-NMRNTPEIKFVLDQSIEYGVRMSK--KIDDVTRD 117
Query: 126 LEK 128
L +
Sbjct: 118 LRE 120
>gi|317504480|ref|ZP_07962458.1| ribosome-binding factor A [Prevotella salivae DSM 15606]
gi|315664423|gb|EFV04112.1| ribosome-binding factor A [Prevotella salivae DSM 15606]
Length = 111
Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats.
Identities = 31/108 (28%), Positives = 55/108 (50%), Gaps = 4/108 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
R R+ ++ L + Q R + ++S++ V +S DL + T Y+S+ +
Sbjct: 5 RQNRISRLLQKELATIFQE---QTRQMHGVMVSVTRVKISPDLSICTAYLSIFPSEKSEE 61
Query: 71 VISALNCNIKFIRGRIGRSLRN-LRYVPELRFRYDTSLQSYWKLNALM 117
++ + N K IR +G +RN LR +PELRF D SL +++ L+
Sbjct: 62 ILKNVTANTKTIRYDLGCRVRNQLRIIPELRFFIDDSLDYIERIDELL 109
>gi|297588442|ref|ZP_06947085.1| ribosome-binding factor A [Finegoldia magna ATCC 53516]
gi|297573815|gb|EFH92536.1| ribosome-binding factor A [Finegoldia magna ATCC 53516]
Length = 121
Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats.
Identities = 31/113 (27%), Positives = 62/113 (54%), Gaps = 3/113 (2%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSP 68
+R R+ E++ + I+N+ +D I + +S+++V ++ DL ATVYI+ + D
Sbjct: 4 KRVRRISSEIKKVISSSIINS-LKDPRIDKLNVSVTDVKVTNDLSFATVYIAVIGDDEKK 62
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+ + LN F++ +IG S+ +LR+VP+L F+ D + + + L+
Sbjct: 63 KQTLEGLNKAKGFLKKQIGESV-DLRHVPQLIFKIDETSEQSMHIENLIKSIH 114
>gi|210612469|ref|ZP_03289327.1| hypothetical protein CLONEX_01528 [Clostridium nexile DSM 1787]
gi|210151577|gb|EEA82584.1| hypothetical protein CLONEX_01528 [Clostridium nexile DSM 1787]
Length = 123
Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats.
Identities = 32/123 (26%), Positives = 58/123 (47%), Gaps = 6/123 (4%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
KNS + RV EV+ L +I +D ++ + S+ V ++ DL+ YIS+ D
Sbjct: 3 KNSIKNTRVNGEVQRELSNII-RGGIKDPRVAP-MTSVVAVEVAPDLKTCKAYISVLGDE 60
Query: 67 S-PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
+ I L +IR + R L N+R PE++F D S+ ++ ++ +
Sbjct: 61 KAQEDTIKGLQSAEGYIRRELARKL-NMRNTPEIKFVMDQSIAYGVAMSKMIDD--VTRD 117
Query: 126 LEK 128
L++
Sbjct: 118 LKE 120
>gi|229829172|ref|ZP_04455241.1| hypothetical protein GCWU000342_01257 [Shuttleworthia satelles DSM
14600]
gi|229792335|gb|EEP28449.1| hypothetical protein GCWU000342_01257 [Shuttleworthia satelles DSM
14600]
Length = 125
Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats.
Identities = 35/114 (30%), Positives = 59/114 (51%), Gaps = 4/114 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
K S + R+ EEV L +I + +D +S + S++ V ++ DL+ A VY+S+ D
Sbjct: 3 KRSVKNNRINEEVLRELSKII-REDVKDPRVS-LMTSVTLVEVAPDLKTAKVYVSVLGDK 60
Query: 67 SPD-RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ L + FIRG++ S+ NLR PEL F D S+ +++ L+
Sbjct: 61 EAGINTVKGLKSSAGFIRGKLAHSV-NLRNTPELFFILDDSIAYGVRMSKLIDQ 113
>gi|226946306|ref|YP_002801379.1| ribosome-binding factor A [Azotobacter vinelandii DJ]
gi|259551948|sp|C1DFK8|RBFA_AZOVD RecName: Full=Ribosome-binding factor A
gi|226721233|gb|ACO80404.1| ribosome-binding factor A [Azotobacter vinelandii DJ]
Length = 129
Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 67/118 (56%), Gaps = 8/118 (6%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K+ R R+G++++ L ++I E +D + +I+++ V ++ DL A V+I++
Sbjct: 2 AKDYSRTQRIGDQMQRELSFLIQR-EIKDPRLG--MITVTAVEVARDLSHAKVFITVMGK 58
Query: 66 VSP----DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+R + L+ F+R ++G+S++ LR VP+L F YD S++ +L+AL+
Sbjct: 59 EDSADEIERNLEILHEAAGFLRMQLGKSMK-LRSVPQLHFSYDASVRRGVELSALIER 115
>gi|303232067|ref|ZP_07318770.1| ribosome-binding factor A [Veillonella atypica ACS-049-V-Sch6]
gi|302513173|gb|EFL55212.1| ribosome-binding factor A [Veillonella atypica ACS-049-V-Sch6]
Length = 118
Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 60/118 (50%), Gaps = 7/118 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-DVSPD 69
R ++ E ++ + +++ +D I ++++V ++ DLR AT+Y+SL D +
Sbjct: 5 RVRKLQEFIKQEVSQMLMRG-LKDPRIG--FTTVTDVHVTGDLREATIYVSLFGSDKEKE 61
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALE 127
+ AL +R +G+ L+ LR++P + F D+SL + +L+ +I E
Sbjct: 62 DTLIALKHASGHVRTELGKVLK-LRHIPTITFDKDSSLDYSMHIESLLN--EIKKDEE 116
>gi|297250254|ref|ZP_06933917.1| ribosome-binding factor A [Neisseria polysaccharea ATCC 43768]
gi|296839414|gb|EFH23352.1| ribosome-binding factor A [Neisseria polysaccharea ATCC 43768]
Length = 141
Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 54/117 (46%), Gaps = 4/117 (3%)
Query: 3 NKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL 62
K + R RV E++ L ++ +D I+++EV ++ D ATV+ ++
Sbjct: 20 RKPQRGYARQDRVKEQIMRELAE-LVRTGLKDPR--AGFITVNEVEVTRDYSHATVFYTV 76
Query: 63 PLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ + L +R + + ++ + +PEL F+YD SL+ L+AL+
Sbjct: 77 LNQDTREITEEVLEHARGHLRSELAKRIKLFK-IPELHFKYDESLERGMNLSALIDQ 132
>gi|291519302|emb|CBK74523.1| ribosome-binding factor A [Butyrivibrio fibrisolvens 16/4]
Length = 124
Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats.
Identities = 36/112 (32%), Positives = 54/112 (48%), Gaps = 4/112 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
KNS + R+ EEV L +I E +D IS S+ V ++ DL+ YIS+ D
Sbjct: 3 KNSVKNTRINEEVMRELSNII-RLEVKDPRISPVT-SVVSVEVAPDLKTCKAYISVLGDD 60
Query: 67 SP-DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ I L + FIR + + NLR PE+ F D S+ K++ L+
Sbjct: 61 EAVAKTIEGLKSSAGFIRRELAHRI-NLRNTPEITFVSDQSIAYAAKMSKLI 111
>gi|269926025|ref|YP_003322648.1| ribosome-binding factor A [Thermobaculum terrenum ATCC BAA-798]
gi|269789685|gb|ACZ41826.1| ribosome-binding factor A [Thermobaculum terrenum ATCC BAA-798]
Length = 121
Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 61/121 (50%), Gaps = 5/121 (4%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
SRR +V +E++ + +++ E +D I ++++ V +S DL AT+++S+
Sbjct: 2 SRRTEQVAQEIKRHISELLVQ-EVRDPRIG--FVTVTAVEVSPDLEHATIHVSVLGSEED 58
Query: 69 D-RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALE 127
+ + AL F+R + + +R LR + ELRF D S +++ L+ P +
Sbjct: 59 EKETMKALRRASGFLRSELAKRIR-LRKMAELRFEPDRSAAEAIRISQLLNEVLPPDDRQ 117
Query: 128 K 128
K
Sbjct: 118 K 118
>gi|303236415|ref|ZP_07323004.1| ribosome-binding factor A [Prevotella disiens FB035-09AN]
gi|302483387|gb|EFL46393.1| ribosome-binding factor A [Prevotella disiens FB035-09AN]
Length = 111
Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats.
Identities = 30/108 (27%), Positives = 56/108 (51%), Gaps = 4/108 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
R R+ ++ L + + Q R + ++S++ +S DL + T Y+S+ +
Sbjct: 5 RQNRIARLLQKELASIFQS---QTRAMHGVLVSVTRAKVSPDLGICTAYLSIFPSEKSEE 61
Query: 71 VISALNCNIKFIRGRIGRSLRN-LRYVPELRFRYDTSLQSYWKLNALM 117
++ +N N K IR +G+ + N LR +PELRF D SL +++ L+
Sbjct: 62 LLENINKNEKSIRFELGQRVHNQLRIIPELRFFIDDSLDYIERIDELL 109
>gi|295094746|emb|CBK83837.1| ribosome-binding factor A [Coprococcus sp. ART55/1]
Length = 137
Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats.
Identities = 34/110 (30%), Positives = 56/110 (50%), Gaps = 4/110 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
KNS + R+ EV+ L +I E +D IS + S+ +V ++ DL+ YIS+ D
Sbjct: 3 KNSVKNNRINGEVQRELSRIISR-EIKDPRISP-MTSVVDVVVTPDLKFCKAYISVLGDQ 60
Query: 67 SP-DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNA 115
D + LN + +IR + S+ NLR PE+ F D S++ ++
Sbjct: 61 DAVDSTFAGLNSAMGYIRRELAHSV-NLRNTPEITFIMDQSIEYGVSMSH 109
>gi|302387316|ref|YP_003823138.1| ribosome-binding factor A [Clostridium saccharolyticum WM1]
gi|302197944|gb|ADL05515.1| ribosome-binding factor A [Clostridium saccharolyticum WM1]
Length = 120
Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats.
Identities = 30/123 (24%), Positives = 57/123 (46%), Gaps = 6/123 (4%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
KNS + R+ EV+ L +I E +D I + ++ ++ DL+ +IS+ D
Sbjct: 3 KNSIKNTRINMEVQRELSDII-RLEIKDPRIHP-MTTVVSAQVTPDLKYCKAFISILGDE 60
Query: 67 SP-DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
I L +IR + R + NLR PE++F D S++ ++ L+ ++
Sbjct: 61 EAGKATIEGLKSAEGYIRRELARRV-NLRNTPEIKFILDQSIEYGVNMSRLI--DEVTKD 117
Query: 126 LEK 128
+ +
Sbjct: 118 IRE 120
>gi|260910466|ref|ZP_05917135.1| ribosome-binding factor A [Prevotella sp. oral taxon 472 str.
F0295]
gi|260635412|gb|EEX53433.1| ribosome-binding factor A [Prevotella sp. oral taxon 472 str.
F0295]
Length = 111
Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats.
Identities = 30/108 (27%), Positives = 56/108 (51%), Gaps = 4/108 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
R R+ ++ L + + Q R++ ++S++ +S DL + T Y+S+ +
Sbjct: 5 RQNRIARLLQKELSLIFQS---QTRMMHGVMVSVTRTRVSPDLSICTAYLSVFPSEKGEE 61
Query: 71 VISALNCNIKFIRGRIGRSLRN-LRYVPELRFRYDTSLQSYWKLNALM 117
++ + NIK IR +G + N LR +PELRF D SL +++ L+
Sbjct: 62 LLKNIESNIKTIRYELGTRVHNQLRIIPELRFFIDDSLDYIERIDELL 109
>gi|78485468|ref|YP_391393.1| ribosome-binding factor A [Thiomicrospira crunogena XCL-2]
gi|123769093|sp|Q31GK4|RBFA_THICR RecName: Full=Ribosome-binding factor A
gi|78363754|gb|ABB41719.1| ribosome-binding factor A [Thiomicrospira crunogena XCL-2]
Length = 121
Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats.
Identities = 36/112 (32%), Positives = 57/112 (50%), Gaps = 8/112 (7%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL----D 65
R RV E+R LM ++ + +D + + ++I+E +S DL +ATVY ++ D
Sbjct: 6 SRPTRVALEIRKTLMEILHRDT-KDPRLEK--VNITECKISKDLSIATVYFTIIGVNEKD 62
Query: 66 VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
I AL F R IG+ + NLR PE+RF YDT ++ + L+
Sbjct: 63 QPAQDAIKALEKAKGFFRSEIGKRM-NLRITPEVRFFYDTVAENASHIEELI 113
>gi|149375754|ref|ZP_01893522.1| ribosome-binding factor A [Marinobacter algicola DG893]
gi|149359879|gb|EDM48335.1| ribosome-binding factor A [Marinobacter algicola DG893]
Length = 145
Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 62/120 (51%), Gaps = 11/120 (9%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS---- 61
P+ R R+G++++ L +I E +D + +++++ V +S DL A VY+S
Sbjct: 2 PREFSRIDRIGDQMQRELAQLIQR-EVKDPRVG--MVTVNAVKVSRDLGYADVYVSLLTT 58
Query: 62 ---LPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
++ LN F++G++GR+++ LR P+LRF +DT L ++ L+
Sbjct: 59 EELTEESPQVRDSLTVLNKAAGFLKGQVGRAMK-LRVTPQLRFHFDTLLGHSRHMDNLIR 117
>gi|325299551|ref|YP_004259468.1| ribosome-binding factor A [Bacteroides salanitronis DSM 18170]
gi|324319104|gb|ADY36995.1| ribosome-binding factor A [Bacteroides salanitronis DSM 18170]
Length = 111
Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 56/112 (50%), Gaps = 4/112 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
+ R ++ ++ L + Q R + ++S+S V +S D+ A Y+S+
Sbjct: 1 METTRQNKIARLLQKELSEMFQQ---QTRAMHGVLVSVSVVRISPDMSYARGYLSVFPSE 57
Query: 67 SPDRVISALNCNIKFIRGRIGRSLR-NLRYVPELRFRYDTSLQSYWKLNALM 117
+ ++ +N N+K IR +G+ +R LR +PEL+F D SL ++ L+
Sbjct: 58 RAEEIVKNINDNVKSIRYELGKRVRFQLRIIPELKFFVDDSLDYAAHIDELL 109
>gi|299771781|ref|YP_003733807.1| ribosome-binding factor A [Acinetobacter sp. DR1]
gi|298701869|gb|ADI92434.1| ribosome-binding factor A [Acinetobacter sp. DR1]
Length = 133
Score = 113 bits (285), Expect = 6e-24, Method: Composition-based stats.
Identities = 32/134 (23%), Positives = 58/134 (43%), Gaps = 16/134 (11%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL--- 64
S+R R+ + V+ L +I E +D + +++IS V +S D+ A VY+++
Sbjct: 3 GSQRLKRMADSVQRELSELI-RQELKDPRLGG-LVTISAVKVSADMGYAEVYVTVMGREL 60
Query: 65 -----DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ + + LN F+R + R ++ R P LRF YD + + L+
Sbjct: 61 GDEQSEAANKETLDVLNKASGFLRHELSRRIKT-RITPRLRFHYDKTNAYGNYMFGLIEK 119
Query: 120 -----PKIPVALEK 128
PK E+
Sbjct: 120 AVNDLPKRDSDEEQ 133
>gi|284035918|ref|YP_003385848.1| ribosome-binding factor A [Spirosoma linguale DSM 74]
gi|283815211|gb|ADB37049.1| ribosome-binding factor A [Spirosoma linguale DSM 74]
Length = 126
Score = 113 bits (285), Expect = 6e-24, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 56/120 (46%), Gaps = 3/120 (2%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
S+R +V +++ L + + L + I+++ V +S DL VA VY+S
Sbjct: 1 MESKRQQKVSRQLQKDLSEIFQRDV--PHLFNGAFITVTSVRISPDLSVARVYLSFLATK 58
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRN-LRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
+ ++ + K +R +G +R+ LR VPEL F D + K++ L IP A
Sbjct: 59 NKQLLLETIQEKGKVLRQHLGDRVRHQLRIVPELHFFLDDTADYADKMDKLFSGLDIPPA 118
>gi|285017809|ref|YP_003375520.1| ribosome-binding factor a protein [Xanthomonas albilineans GPE
PC73]
gi|283473027|emb|CBA15532.1| probable ribosome-binding factor a protein [Xanthomonas
albilineans]
Length = 136
Score = 113 bits (285), Expect = 6e-24, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 62/122 (50%), Gaps = 5/122 (4%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
K+ RR RV ++R L ++ +D + +S+S+V ++ D+ A V+++ +
Sbjct: 4 KSFRRTDRVAAQIRRDLGTIVH-AAVRDHGLPS--VSVSDVEVTRDMAHAKVFVTALMPE 60
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL-PKIPVA 125
+ L +R + R+++ LR+VPEL F YD S+ +++ L+ P++
Sbjct: 61 RSSEAVKGLKELAPQLRTELARAMK-LRHVPELHFHYDDSVDRGERIDTLLRDMPELQSG 119
Query: 126 LE 127
+E
Sbjct: 120 VE 121
>gi|184156671|ref|YP_001845010.1| ribosome-binding factor A [Acinetobacter baumannii ACICU]
gi|332873079|ref|ZP_08441036.1| ribosome-binding factor A [Acinetobacter baumannii 6014059]
gi|238691022|sp|B2I2M8|RBFA_ACIBC RecName: Full=Ribosome-binding factor A
gi|183208265|gb|ACC55663.1| Ribosome-binding factor A [Acinetobacter baumannii ACICU]
gi|322506558|gb|ADX02012.1| rbfA [Acinetobacter baumannii 1656-2]
gi|323516437|gb|ADX90818.1| ribosome-binding factor A [Acinetobacter baumannii TCDC-AB0715]
gi|332738591|gb|EGJ69461.1| ribosome-binding factor A [Acinetobacter baumannii 6014059]
Length = 133
Score = 113 bits (285), Expect = 6e-24, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 54/118 (45%), Gaps = 11/118 (9%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL--- 64
+R R+ + V+ L +I E +D + +++IS V +S DL A VY+++
Sbjct: 3 GGQRLKRMADSVQRELSELI-RQELKDPRLGG-LVTISGVKVSPDLGYADVYVTVMGREL 60
Query: 65 -----DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+V+ + LN F+R + R ++ R P LRF YD + + L+
Sbjct: 61 SDDQNEVAHRETLDILNKASGFLRQELSRRIKT-RITPRLRFHYDKTNAYGNYMFGLI 117
>gi|289449941|ref|YP_003474588.1| ribosome-binding factor A [Clostridiales genomosp. BVAB3 str.
UPII9-5]
gi|289184488|gb|ADC90913.1| ribosome-binding factor A [Clostridiales genomosp. BVAB3 str.
UPII9-5]
Length = 137
Score = 113 bits (285), Expect = 6e-24, Method: Composition-based stats.
Identities = 31/108 (28%), Positives = 57/108 (52%), Gaps = 4/108 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV-SPD 69
RA RVG++++ L ++ R++ +++ V ++ DL AT YIS+ D +
Sbjct: 5 RAERVGDQIKRELSKILQRGLKDQRVLP--FTAVTAVDVTNDLSHATCYISVLGDALAQK 62
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ L ++R +I +R LR VPEL F+ D S+Q +++ L+
Sbjct: 63 NCLLGLQSASGYLRRQIAGLIR-LRIVPELHFKPDNSVQEGLRMDKLI 109
>gi|256821532|ref|YP_003145495.1| ribosome-binding factor A [Kangiella koreensis DSM 16069]
gi|256795071|gb|ACV25727.1| ribosome-binding factor A [Kangiella koreensis DSM 16069]
Length = 122
Score = 113 bits (285), Expect = 6e-24, Method: Composition-based stats.
Identities = 30/110 (27%), Positives = 60/110 (54%), Gaps = 7/110 (6%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
RA RV ++++ L V+L E +D + ++++S V ++ DL+ A V+++
Sbjct: 5 RAKRVADQIQRDLA-VLLQREMKDPRLG--IVTVSGVEVTSDLQNAKVFVTFLGKDEEQE 61
Query: 71 V---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ + L F+R ++ +S+R +R VP LRF +D S+ K+ +L+
Sbjct: 62 IKQALEVLTGAAGFLRSQLAKSIR-MRSVPSLRFLFDKSIVEGQKMTSLI 110
>gi|260893507|ref|YP_003239604.1| ribosome-binding factor A [Ammonifex degensii KC4]
gi|260865648|gb|ACX52754.1| ribosome-binding factor A [Ammonifex degensii KC4]
Length = 121
Score = 113 bits (285), Expect = 6e-24, Method: Composition-based stats.
Identities = 30/114 (26%), Positives = 57/114 (50%), Gaps = 5/114 (4%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD-VS 67
S R+ R+ E ++ + V+ +E +D + ++++ V +S DLR A +++S+
Sbjct: 2 SYRSARLAEAIKEVVADVL-QHELKDPRLG--FVTVTRVEVSADLRHAKIFLSVYGSPEE 58
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
L FIR +G+ LR LR+VPE+ + D S+ ++ L+ K
Sbjct: 59 EKESFEVLEKAKGFIRSALGKRLR-LRHVPEIVLKPDPSISYGVRVMELLSEIK 111
>gi|224367582|ref|YP_002601745.1| RbfA [Desulfobacterium autotrophicum HRM2]
gi|259551968|sp|C0QHM3|RBFA_DESAH RecName: Full=Ribosome-binding factor A
gi|223690298|gb|ACN13581.1| RbfA [Desulfobacterium autotrophicum HRM2]
Length = 119
Score = 113 bits (285), Expect = 6e-24, Method: Composition-based stats.
Identities = 34/114 (29%), Positives = 57/114 (50%), Gaps = 5/114 (4%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
K R+ RV ++ L +I + QD I +++IS V ++ DLR+A VY S+ D
Sbjct: 2 KPYPRSERVAARIQEILSDLI-KKKVQDPRIE--LVTISSVRLTSDLRIAYVYFSVFGDE 58
Query: 67 SP-DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ + L + FI+ + L LRY+PEL+F +D S ++ L+
Sbjct: 59 ARVEEATQGLKSSHGFIKRHVASQL-GLRYMPELKFIHDQSFDRGTHMDQLLKS 111
>gi|169634552|ref|YP_001708288.1| ribosome-binding factor A [Acinetobacter baumannii SDF]
gi|169797406|ref|YP_001715199.1| ribosome-binding factor A [Acinetobacter baumannii AYE]
gi|213155780|ref|YP_002317825.1| ribosome-binding factor A [Acinetobacter baumannii AB0057]
gi|215484845|ref|YP_002327082.1| ribosome-binding factor A [Acinetobacter baumannii AB307-0294]
gi|239500929|ref|ZP_04660239.1| ribosome-binding factor A [Acinetobacter baumannii AB900]
gi|260556298|ref|ZP_05828517.1| ribosome-binding factor A [Acinetobacter baumannii ATCC 19606]
gi|301345332|ref|ZP_07226073.1| ribosome-binding factor A [Acinetobacter baumannii AB056]
gi|301513362|ref|ZP_07238599.1| ribosome-binding factor A [Acinetobacter baumannii AB058]
gi|301594587|ref|ZP_07239595.1| ribosome-binding factor A [Acinetobacter baumannii AB059]
gi|332855371|ref|ZP_08435836.1| ribosome-binding factor A [Acinetobacter baumannii 6013150]
gi|332867633|ref|ZP_08437765.1| ribosome-binding factor A [Acinetobacter baumannii 6013113]
gi|226736632|sp|B7H114|RBFA_ACIB3 RecName: Full=Ribosome-binding factor A
gi|226736633|sp|B7I3S0|RBFA_ACIB5 RecName: Full=Ribosome-binding factor A
gi|238685501|sp|A3M1K4|RBFA_ACIBT RecName: Full=Ribosome-binding factor A
gi|238688105|sp|B0VE80|RBFA_ACIBY RecName: Full=Ribosome-binding factor A
gi|238688130|sp|B0VLU1|RBFA_ACIBS RecName: Full=Ribosome-binding factor A
gi|169150333|emb|CAM88230.1| ribosome-binding factor A [Acinetobacter baumannii AYE]
gi|169153344|emb|CAP02457.1| ribosome-binding factor A [Acinetobacter baumannii]
gi|193076183|gb|ABO10798.2| ribosome-binding factor A [Acinetobacter baumannii ATCC 17978]
gi|213054940|gb|ACJ39842.1| ribosome-binding factor A [Acinetobacter baumannii AB0057]
gi|213988968|gb|ACJ59267.1| ribosome-binding factor A [Acinetobacter baumannii AB307-0294]
gi|260410353|gb|EEX03652.1| ribosome-binding factor A [Acinetobacter baumannii ATCC 19606]
gi|332727503|gb|EGJ58929.1| ribosome-binding factor A [Acinetobacter baumannii 6013150]
gi|332733827|gb|EGJ64974.1| ribosome-binding factor A [Acinetobacter baumannii 6013113]
Length = 133
Score = 113 bits (285), Expect = 6e-24, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 54/118 (45%), Gaps = 11/118 (9%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL--- 64
+R R+ + V+ L +I E +D + +++IS V +S DL A VY+++
Sbjct: 3 GGQRLKRMADSVQRELSELI-RQELKDPRLGG-LVTISGVKVSPDLGYADVYVTVMGREL 60
Query: 65 -----DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+V+ + LN F+R + R ++ R P LRF YD + + L+
Sbjct: 61 SDDQNEVAHRETLDILNKASGFLRQELSRRIKT-RITPRLRFHYDKTNAYGNYMFGLI 117
>gi|313668519|ref|YP_004048803.1| ribosomal-binding factor A [Neisseria lactamica ST-640]
gi|308389491|gb|ADO31811.1| ribosomal-binding factor A [Neisseria meningitidis alpha710]
gi|309378865|emb|CBX22570.1| unnamed protein product [Neisseria lactamica Y92-1009]
gi|313005981|emb|CBN87438.1| ribosomal-binding factor A [Neisseria lactamica 020-06]
Length = 123
Score = 113 bits (285), Expect = 6e-24, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 54/117 (46%), Gaps = 4/117 (3%)
Query: 3 NKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL 62
K + R RV E++ L ++ +D I+++EV ++ D ATV+ ++
Sbjct: 2 RKPQRGYARQDRVKEQIMRELAE-LVRTGLKDPR--AGFITVNEVEVTRDYSHATVFYTV 58
Query: 63 PLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ + L +R + + ++ + +PEL F+YD SL+ L+AL+
Sbjct: 59 LNQDAREITEEVLEHARGHLRSELAKRIKLFK-IPELHFKYDESLERGMNLSALIDQ 114
>gi|225075533|ref|ZP_03718732.1| hypothetical protein NEIFLAOT_00546 [Neisseria flavescens
NRL30031/H210]
gi|224953168|gb|EEG34377.1| hypothetical protein NEIFLAOT_00546 [Neisseria flavescens
NRL30031/H210]
Length = 123
Score = 113 bits (285), Expect = 7e-24, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 54/117 (46%), Gaps = 4/117 (3%)
Query: 3 NKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL 62
K + R RV E++ L ++ +D I+I+EV ++ D ATV+ ++
Sbjct: 2 RKPQRGYARQDRVKEQIMRELAE-LVRTGLKDPR--AGFITINEVEVTRDYSHATVFYTV 58
Query: 63 PLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ + L +R + + ++ + +PEL F+YD SL+ L+AL+
Sbjct: 59 LNQDTREITEEVLEHARGHLRSELAKRIKLFK-IPELHFKYDESLERGMNLSALIDQ 114
>gi|254670020|emb|CBA04785.1| Ribosome-binding factor A [Neisseria meningitidis alpha153]
gi|261392353|emb|CAX49891.1| ribosome-binding factor A [Neisseria meningitidis 8013]
Length = 123
Score = 113 bits (285), Expect = 7e-24, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 54/117 (46%), Gaps = 4/117 (3%)
Query: 3 NKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL 62
K + R RV E++ L ++ +D I+++EV ++ D ATV+ ++
Sbjct: 2 RKPQRGYARQDRVKEQIMRELAE-LVRTGLKDPR--AGFITVNEVEVTRDYSHATVFYTI 58
Query: 63 PLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ + L +R + + ++ + +PEL F+YD SL+ L+AL+
Sbjct: 59 LNQDAREITEEVLEHARGHLRSELAKRIKLFK-IPELHFKYDESLERGMNLSALIDQ 114
>gi|153805797|ref|ZP_01958465.1| hypothetical protein BACCAC_00033 [Bacteroides caccae ATCC 43185]
gi|149130474|gb|EDM21680.1| hypothetical protein BACCAC_00033 [Bacteroides caccae ATCC 43185]
Length = 110
Score = 113 bits (285), Expect = 7e-24, Method: Composition-based stats.
Identities = 31/112 (27%), Positives = 60/112 (53%), Gaps = 4/112 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
+ R ++ ++ L + L Q + + ++S+S V +S D+ +A VY+S+
Sbjct: 1 METTRQNKISRLLQKELSEIFL---LQTKAMHGTLVSVSAVRISPDMSIARVYLSVFPSE 57
Query: 67 SPDRVISALNCNIKFIRGRIGRSLR-NLRYVPELRFRYDTSLQSYWKLNALM 117
+ ++ +N N+K IR +G +R LR +PEL+F D SL K+++L+
Sbjct: 58 KAEEMVKNINDNMKSIRYELGTRVRYQLRIIPELKFFVDDSLDYIEKIDSLL 109
>gi|325136469|gb|EGC59075.1| ribosome-binding factor A [Neisseria meningitidis M0579]
Length = 123
Score = 113 bits (285), Expect = 7e-24, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 53/117 (45%), Gaps = 4/117 (3%)
Query: 3 NKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL 62
K + R RV E++ L ++ +D I+++EV ++ D ATV+ ++
Sbjct: 2 RKPQRGYARQDRVKEQIMRELAE-LVRTGLKDPR--AGFITVNEVEVTRDYSHATVFYTV 58
Query: 63 PLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ + L +R + + ++ + PEL F+YD SL+ L+AL+
Sbjct: 59 LNQDAREITEEVLEHARGHLRSELAKRIKLFK-TPELHFKYDESLERGLNLSALIDQ 114
>gi|262280760|ref|ZP_06058543.1| ribosome-binding factor A [Acinetobacter calcoaceticus RUH2202]
gi|262257660|gb|EEY76395.1| ribosome-binding factor A [Acinetobacter calcoaceticus RUH2202]
Length = 133
Score = 113 bits (285), Expect = 7e-24, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 11/118 (9%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL--- 64
S+R R+ + V+ L +I E +D + +++IS V +S D+ A VY+++
Sbjct: 3 GSQRLKRMADSVQRELSELI-RQELKDPRLGG-LVTISAVKVSADMGYAEVYVTVMGREL 60
Query: 65 -----DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ + + LN F+R + R ++ R P LRF YD + + L+
Sbjct: 61 GDEQSEAANKETLDVLNKASGFLRHELSRRIKT-RITPRLRFHYDKTNAYGNYMFGLI 117
>gi|218782568|ref|YP_002433886.1| ribosome-binding factor A [Desulfatibacillum alkenivorans AK-01]
gi|226736643|sp|B8FCY7|RBFA_DESAA RecName: Full=Ribosome-binding factor A
gi|218763952|gb|ACL06418.1| ribosome-binding factor A [Desulfatibacillum alkenivorans AK-01]
Length = 123
Score = 113 bits (285), Expect = 7e-24, Method: Composition-based stats.
Identities = 29/109 (26%), Positives = 50/109 (45%), Gaps = 5/109 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPD- 69
R RV ++ L +I D + +I+ V M+ DL++A VY + +
Sbjct: 6 RQDRVAGRIQQELSALIQKR-INDPRLE--WATITGVKMTKDLKIARVYYCVFGEEEKKI 62
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+V A FI+ + + L LRY+PEL F +D S K+ +++
Sbjct: 63 KVGEAFQQAHGFIKRELAKKL-GLRYMPELEFFFDESFDYGRKIESILR 110
>gi|33866739|ref|NP_898298.1| ribosome-binding factor A [Synechococcus sp. WH 8102]
gi|39931754|sp|Q7TTS8|RBFA_SYNPX RecName: Full=Ribosome-binding factor A
gi|33639340|emb|CAE08722.1| possible Ribosome-binding factor A [Synechococcus sp. WH 8102]
Length = 134
Score = 113 bits (284), Expect = 7e-24, Method: Composition-based stats.
Identities = 26/115 (22%), Positives = 58/115 (50%), Gaps = 3/115 (2%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS 67
RR RV +R +++N +D + + ++SI+ V +S DL+ +++S+ D +
Sbjct: 3 QGRRVERVAALIRKETSELLING-IRDERVHQGMVSITNVEVSGDLQHCKIFVSIFGDEA 61
Query: 68 PD-RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+V+ L +++G +GR L +R P++ F+ D ++ + L+ +
Sbjct: 62 SQLQVMEGLQAASGYLKGELGRRL-QMRRAPDVVFQLDRGIERGTSVLGLLNKLE 115
>gi|116748670|ref|YP_845357.1| ribosome-binding factor A [Syntrophobacter fumaroxidans MPOB]
gi|171460794|sp|A0LHM0|RBFA_SYNFM RecName: Full=Ribosome-binding factor A
gi|116697734|gb|ABK16922.1| ribosome-binding factor A [Syntrophobacter fumaroxidans MPOB]
Length = 117
Score = 113 bits (284), Expect = 7e-24, Method: Composition-based stats.
Identities = 31/114 (27%), Positives = 59/114 (51%), Gaps = 7/114 (6%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-- 64
+RA RV + +R + ++L +D +S+ ++I+ + ++ DL+ A V+ L
Sbjct: 1 MEYKRADRVADLLRREMADLLLRR-IKDPRVSK--VTITAIEVTDDLQNAKVFFCLMGAA 57
Query: 65 -DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ LN F+R +G+ L +LRY+P+L F YD+S + K+ L+
Sbjct: 58 TEEEKRSAALGLNRGKGFMRLELGKRL-HLRYLPQLSFHYDSSFEYGDKIERLL 110
>gi|240128400|ref|ZP_04741061.1| ribosome-binding factor A [Neisseria gonorrhoeae SK-93-1035]
gi|268686799|ref|ZP_06153661.1| ribosome-binding factor A [Neisseria gonorrhoeae SK-93-1035]
gi|268627083|gb|EEZ59483.1| ribosome-binding factor A [Neisseria gonorrhoeae SK-93-1035]
Length = 123
Score = 113 bits (284), Expect = 7e-24, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 54/117 (46%), Gaps = 4/117 (3%)
Query: 3 NKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL 62
K + R RV E++ L ++ +D I+I+EV ++ D ATV+ ++
Sbjct: 2 RKPQRGYARQDRVKEQIMRELAE-LVRTGLKDPR--AGFITINEVEVTRDYSHATVFYTV 58
Query: 63 PLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ + L +R + + ++ + +PEL F+YD SL+ L+AL+
Sbjct: 59 LNQDTCEITEEVLEHARGHLRSELSKRIKLFK-IPELHFKYDESLERGMSLSALIDQ 114
>gi|212212199|ref|YP_002303135.1| ribosome-binding factor A [Coxiella burnetii CbuG_Q212]
gi|226723596|sp|B6IZ62|RBFA_COXB2 RecName: Full=Ribosome-binding factor A
gi|212010609|gb|ACJ17990.1| ribosome-binding factor A [Coxiella burnetii CbuG_Q212]
Length = 119
Score = 113 bits (284), Expect = 8e-24, Method: Composition-based stats.
Identities = 35/111 (31%), Positives = 61/111 (54%), Gaps = 4/111 (3%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
S+R RV + + L +L E +D +S+ IS++ V +S DL+ A V+ SL + +
Sbjct: 2 SQRQQRVADLIHQQLAE-LLKKEVRDSRLSK--ISLTAVSISPDLKQAKVFYSLLENQNE 58
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
V ALN ++R + ++ LRYVP+L F YD S++ +++ L+
Sbjct: 59 KEVQKALNKATGYLRHLLAQA-TVLRYVPKLEFVYDESIERAHRISFLIER 108
>gi|325955537|ref|YP_004239197.1| ribosome-binding factor A [Weeksella virosa DSM 16922]
gi|323438155|gb|ADX68619.1| Ribosome-binding factor A [Weeksella virosa DSM 16922]
Length = 119
Score = 113 bits (284), Expect = 8e-24, Method: Composition-based stats.
Identities = 29/113 (25%), Positives = 59/113 (52%), Gaps = 3/113 (2%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
+S R +VG+ + L ++ L +++S++EV ++ DL +A V+IS+ +
Sbjct: 1 MDSNRQQKVGKLFQEELAEAF--RKWASELFPGNLVSVTEVKVTPDLSIAKVFISIFPND 58
Query: 67 SPDRVISALNCNIKFIRGRIGR-SLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
D ++ +N + RG + + + +N+R PEL FR D +L K++ +
Sbjct: 59 KKDEILQEINTQAPYFRGILSKGAAKNMRLTPELIFRLDPTLDEMDKIDRALS 111
>gi|318042498|ref|ZP_07974454.1| ribosome-binding factor A [Synechococcus sp. CB0101]
Length = 136
Score = 113 bits (284), Expect = 8e-24, Method: Composition-based stats.
Identities = 26/118 (22%), Positives = 58/118 (49%), Gaps = 3/118 (2%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS 67
RR RV +R + +++N +D +S ++S++ V ++ DL+ +Y+S+ +
Sbjct: 3 QGRRVERVAALIRREVSELLVNG-IKDDRVSLGMVSVTNVEVAGDLQHCKIYVSVYGNPE 61
Query: 68 -PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPV 124
+ ++ L +++G +GR L N+R PE+ F D ++ + L+ +
Sbjct: 62 VQQQALAGLRSAASYVKGELGRRL-NMRRTPEVIFHLDRGIEKGTSVLGLLNQLEQNR 118
>gi|198277392|ref|ZP_03209923.1| hypothetical protein BACPLE_03604 [Bacteroides plebeius DSM 17135]
gi|198269890|gb|EDY94160.1| hypothetical protein BACPLE_03604 [Bacteroides plebeius DSM 17135]
Length = 111
Score = 113 bits (284), Expect = 8e-24, Method: Composition-based stats.
Identities = 31/112 (27%), Positives = 59/112 (52%), Gaps = 4/112 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
+ R ++ ++ L + L Q + + ++S+S V +S D+ A VY+S+
Sbjct: 1 METTRQNKIARLIQKELSEIFL---LQTKSMPGVLVSVSIVRISPDMSYARVYLSVFPSE 57
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRN-LRYVPELRFRYDTSLQSYWKLNALM 117
+ ++ +N N+K IR +G +R+ LR +PEL+F D SL K++ L+
Sbjct: 58 RSEEIVKNINTNMKSIRFELGNRVRHQLRIIPELKFFVDDSLDYAEKIDELL 109
>gi|254805168|ref|YP_003083389.1| Ribosome-binding factor A [Neisseria meningitidis alpha14]
gi|261377491|ref|ZP_05982064.1| ribosome-binding factor A [Neisseria cinerea ATCC 14685]
gi|254668710|emb|CBA06489.1| Ribosome-binding factor A [Neisseria meningitidis alpha14]
gi|269146221|gb|EEZ72639.1| ribosome-binding factor A [Neisseria cinerea ATCC 14685]
Length = 123
Score = 113 bits (284), Expect = 8e-24, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 54/117 (46%), Gaps = 4/117 (3%)
Query: 3 NKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL 62
K + R RV E++ L ++ +D I+I+EV ++ D ATV+ ++
Sbjct: 2 RKPQRGYARQDRVKEQIMRELAE-LVRTGLKDPR--AGFITINEVEVTRDYSHATVFYTV 58
Query: 63 PLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ + L +R + + ++ + +PEL F+YD SL+ L+AL+
Sbjct: 59 LNQDAREITEEVLEHARGHLRSELAKRIKLFK-IPELHFKYDESLERGMNLSALIDQ 114
>gi|153814917|ref|ZP_01967585.1| hypothetical protein RUMTOR_01132 [Ruminococcus torques ATCC 27756]
gi|317500429|ref|ZP_07958653.1| ribosome-binding factor A [Lachnospiraceae bacterium 8_1_57FAA]
gi|331089564|ref|ZP_08338463.1| ribosome-binding factor A [Lachnospiraceae bacterium 3_1_46FAA]
gi|145847948|gb|EDK24866.1| hypothetical protein RUMTOR_01132 [Ruminococcus torques ATCC 27756]
gi|316898184|gb|EFV20231.1| ribosome-binding factor A [Lachnospiraceae bacterium 8_1_57FAA]
gi|330404932|gb|EGG84470.1| ribosome-binding factor A [Lachnospiraceae bacterium 3_1_46FAA]
Length = 127
Score = 113 bits (284), Expect = 8e-24, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 57/121 (47%), Gaps = 6/121 (4%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
KNS + RV EV+ L ++ +D +S + S+ V ++ DL+ YIS+ D
Sbjct: 3 KNSIKNTRVNAEVQRELSNIL-RGGIKDPRVSP-MTSVVAVEVAPDLKTCKAYISVLGDE 60
Query: 67 S-PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
I L FIR + R++ N+R PE++F D S++ ++ + ++
Sbjct: 61 KAQQDTIKGLQSAEGFIRRELARTI-NMRNTPEIKFIVDQSIEYGVNISK--KIDEVTKD 117
Query: 126 L 126
L
Sbjct: 118 L 118
>gi|87119790|ref|ZP_01075687.1| Ribosome-binding factor A [Marinomonas sp. MED121]
gi|86165266|gb|EAQ66534.1| Ribosome-binding factor A [Marinomonas sp. MED121]
Length = 130
Score = 113 bits (284), Expect = 8e-24, Method: Composition-based stats.
Identities = 33/127 (25%), Positives = 63/127 (49%), Gaps = 9/127 (7%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
R R+G++++ L +I E +D + +++I+EV ++ DL A VY ++
Sbjct: 2 ASEFSRTSRIGDQLQKELASII-QFEVKDPRLG--IVTINEVRVAKDLGYADVYYTVLGM 58
Query: 66 VSPDRVIS----ALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
++ AL+ F+R R + ++ LR +P LRF YD S+ + K++AL+
Sbjct: 59 DDKPEKLAENQTALDSASNFLRRRASQEIK-LRVMPLLRFHYDDSVVNGAKMSALI-DEA 116
Query: 122 IPVALEK 128
I +
Sbjct: 117 IKADAKH 123
>gi|153004010|ref|YP_001378335.1| ribosome-binding factor A [Anaeromyxobacter sp. Fw109-5]
gi|166218417|sp|A7H9F5|RBFA_ANADF RecName: Full=Ribosome-binding factor A
gi|152027583|gb|ABS25351.1| ribosome-binding factor A [Anaeromyxobacter sp. Fw109-5]
Length = 122
Score = 113 bits (284), Expect = 8e-24, Method: Composition-based stats.
Identities = 36/109 (33%), Positives = 54/109 (49%), Gaps = 4/109 (3%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP-LDVSP 68
R RV EE R L VI +D + I+++ MS DL+ T Y+S+ D
Sbjct: 5 SRPARVAEEFRHGLADVIARG-LKDPRV-TGFITVTGAKMSPDLKEVTAYVSIHAEDAER 62
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+R + L F++ + RSLR LR+ P LRF YD S+ ++ L+
Sbjct: 63 ERTLEGLKAASTFLQREVARSLR-LRHTPHLRFVYDESVARGDRIERLL 110
>gi|325915556|ref|ZP_08177867.1| ribosome-binding factor A [Xanthomonas vesicatoria ATCC 35937]
gi|325538272|gb|EGD09957.1| ribosome-binding factor A [Xanthomonas vesicatoria ATCC 35937]
Length = 130
Score = 113 bits (284), Expect = 8e-24, Method: Composition-based stats.
Identities = 30/113 (26%), Positives = 56/113 (49%), Gaps = 4/113 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
K+ R RV +VR L ++ +D + +S+S+V +S DL A V+++
Sbjct: 4 KSFHRTDRVSAQVRRDLGTIVH-AAVRDHGLPS--VSVSDVEISRDLAHAKVFVTALQQE 60
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ L +R ++ R+++ LR+VPEL F YD S+ +++ L+
Sbjct: 61 RSAEAVKGLKEIAGQLRTQLARAMK-LRHVPELHFHYDDSVDRGERIDNLLRD 112
>gi|261400321|ref|ZP_05986446.1| ribosome-binding factor A [Neisseria lactamica ATCC 23970]
gi|269209942|gb|EEZ76397.1| ribosome-binding factor A [Neisseria lactamica ATCC 23970]
Length = 123
Score = 113 bits (284), Expect = 9e-24, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 54/117 (46%), Gaps = 4/117 (3%)
Query: 3 NKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL 62
K + R RV E++ L ++ +D I+++EV ++ D ATV+ ++
Sbjct: 2 RKPQRGYARQDRVKEQIMRELAE-LVRTGLKDPR--AGFITVNEVEVTRDYSHATVFYTV 58
Query: 63 PLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ + L +R + + ++ + +PEL F+YD SL+ L+AL+
Sbjct: 59 LNQDAREITEEVLEHARGHLRSELAKRIKLFK-IPELHFKYDESLERGMSLSALIDQ 114
>gi|71854003|gb|AAZ52026.1| ribosome-binding factor A [Streptococcus pyogenes MGAS5005]
Length = 163
Score = 113 bits (284), Expect = 9e-24, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 55/119 (46%), Gaps = 6/119 (5%)
Query: 3 NKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL 62
+ + R RVG E++ + ++ + +D + ++I+EV M DL +A VY ++
Sbjct: 44 KEMAMANHRIDRVGMEIKREVNDIL-QKKVRDPRVQG--VTITEVQMQGDLSLAKVYYTI 100
Query: 63 PLD--VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
D + + L I+ +G+ L + +P+L F D S+ K++ L+
Sbjct: 101 MSDLASDNQKAQTGLEKATGTIKRELGKQL-TMYKIPDLVFEKDNSIAYGNKIDQLLRD 158
>gi|293610136|ref|ZP_06692437.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|292827368|gb|EFF85732.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|325124309|gb|ADY83832.1| ribosome-binding factor A [Acinetobacter calcoaceticus PHEA-2]
Length = 133
Score = 113 bits (284), Expect = 9e-24, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 11/118 (9%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL--- 64
S+R R+ + V+ L +I E +D + +++IS V +S D+ A VY+++
Sbjct: 3 GSQRLKRMADSVQRELSELI-RQELKDPRLGG-LVTISAVKVSADMGYAEVYVTVMGREL 60
Query: 65 -----DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ + + LN F+R + R ++ R P LRF YD + + L+
Sbjct: 61 GDEQSEAANKETLDVLNKASGFLRHELSRRIKT-RITPRLRFHYDKTNAYGNYMFGLI 117
>gi|58582840|ref|YP_201856.1| ribosome-binding factor A [Xanthomonas oryzae pv. oryzae KACC10331]
gi|84624707|ref|YP_452079.1| ribosome-binding factor A [Xanthomonas oryzae pv. oryzae MAFF
311018]
gi|62510970|sp|Q5GXV0|RBFA_XANOR RecName: Full=Ribosome-binding factor A
gi|123521403|sp|Q2P0X2|RBFA_XANOM RecName: Full=Ribosome-binding factor A
gi|58427434|gb|AAW76471.1| ribosomal-binding factor A [Xanthomonas oryzae pv. oryzae
KACC10331]
gi|84368647|dbj|BAE69805.1| ribosomal-binding factor A [Xanthomonas oryzae pv. oryzae MAFF
311018]
Length = 130
Score = 113 bits (284), Expect = 9e-24, Method: Composition-based stats.
Identities = 30/113 (26%), Positives = 56/113 (49%), Gaps = 4/113 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
K+ R RV +VR L ++ +D + +S+S+V +S DL A V+++
Sbjct: 4 KSFHRTDRVSAQVRRDLGTIVH-AAVRDHGLPS--VSVSDVEISRDLAHAKVFVTALQQE 60
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ L +R ++ R+++ LR+VPEL F YD S+ +++ L+
Sbjct: 61 RSAEAVKGLKDIAGQLRTQLARAMK-LRHVPELHFHYDDSVDRGERIDNLLRD 112
>gi|29654722|ref|NP_820414.1| ribosome-binding factor A [Coxiella burnetii RSA 493]
gi|153207247|ref|ZP_01946011.1| ribosome-binding factor A [Coxiella burnetii 'MSU Goat Q177']
gi|154707600|ref|YP_001423974.1| ribosome-binding factor A [Coxiella burnetii Dugway 5J108-111]
gi|161830027|ref|YP_001597275.1| ribosome-binding factor A [Coxiella burnetii RSA 331]
gi|165918811|ref|ZP_02218897.1| ribosome-binding factor A [Coxiella burnetii RSA 334]
gi|212218230|ref|YP_002305017.1| ribosome-binding factor A [Coxiella burnetii CbuK_Q154]
gi|34098454|sp|Q83BS2|RBFA_COXBU RecName: Full=Ribosome-binding factor A
gi|189039536|sp|A9KBM2|RBFA_COXBN RecName: Full=Ribosome-binding factor A
gi|189039537|sp|A9N8V5|RBFA_COXBR RecName: Full=Ribosome-binding factor A
gi|226723595|sp|B6J6B2|RBFA_COXB1 RecName: Full=Ribosome-binding factor A
gi|29541990|gb|AAO90928.1| ribosome-binding factor A [Coxiella burnetii RSA 493]
gi|120576735|gb|EAX33359.1| ribosome-binding factor A [Coxiella burnetii 'MSU Goat Q177']
gi|154356886|gb|ABS78348.1| ribosome-binding factor A [Coxiella burnetii Dugway 5J108-111]
gi|161761894|gb|ABX77536.1| ribosome-binding factor A [Coxiella burnetii RSA 331]
gi|165917535|gb|EDR36139.1| ribosome-binding factor A [Coxiella burnetii RSA 334]
gi|212012492|gb|ACJ19872.1| ribosome-binding factor A [Coxiella burnetii CbuK_Q154]
Length = 119
Score = 113 bits (284), Expect = 9e-24, Method: Composition-based stats.
Identities = 35/111 (31%), Positives = 61/111 (54%), Gaps = 4/111 (3%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
S+R RV + + L +L E +D +S+ IS++ V +S DL+ A V+ SL + +
Sbjct: 2 SQRQQRVADLIHQQLAE-LLKKEVRDSRLSK--ISLTAVSISPDLKQAKVFYSLLENQNE 58
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
V ALN ++R + ++ LRYVP+L F YD S++ +++ L+
Sbjct: 59 KEVQKALNKATGYLRHLLAQA-TVLRYVPKLEFVYDESIERAHRISLLIER 108
>gi|297798442|ref|XP_002867105.1| hypothetical protein ARALYDRAFT_353351 [Arabidopsis lyrata subsp.
lyrata]
gi|297312941|gb|EFH43364.1| hypothetical protein ARALYDRAFT_353351 [Arabidopsis lyrata subsp.
lyrata]
Length = 787
Score = 113 bits (284), Expect = 9e-24, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 62/121 (51%), Gaps = 15/121 (12%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQ------------DRLISRDVISISEVCMSVDLRVAT 57
RR V +++ L ++L + DR +S + +IS+V +S DL+V
Sbjct: 565 RRVKMVAKQIMRELSDMLLTDTVLQHAVLPEAALGADRYLSS-LTTISDVEVSNDLQVVK 623
Query: 58 VYISLPLDVSPDRV-ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNAL 116
VY+S+ D V I+ L K++R +G+ ++ LR PE+RF D S++ ++ A+
Sbjct: 624 VYVSVFGDDRGKDVAIAGLKSKAKYVRSELGKRMK-LRLTPEVRFIEDESMERGSRVIAI 682
Query: 117 M 117
+
Sbjct: 683 L 683
>gi|260550523|ref|ZP_05824733.1| ribosome-binding factor A [Acinetobacter sp. RUH2624]
gi|260406438|gb|EEW99920.1| ribosome-binding factor A [Acinetobacter sp. RUH2624]
Length = 133
Score = 113 bits (284), Expect = 9e-24, Method: Composition-based stats.
Identities = 31/134 (23%), Positives = 58/134 (43%), Gaps = 16/134 (11%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL--- 64
S+R R+ + V+ L +I E +D + +++IS V +S D+ A VY+++
Sbjct: 3 GSQRLKRMADSVQRELSDLI-RQELKDPRLGG-LVTISAVKVSADMGYAEVYVTVMGREL 60
Query: 65 -----DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ + + LN F+R + R ++ R P LRF YD + + L+
Sbjct: 61 GDEQSEAANKETLDVLNKASGFLRHELSRRIKT-RITPRLRFHYDKTNAYGNYMFGLIEK 119
Query: 120 -----PKIPVALEK 128
P+ E+
Sbjct: 120 AVQDLPERKSDDEE 133
>gi|311744913|ref|ZP_07718698.1| ribosome-binding factor A [Algoriphagus sp. PR1]
gi|126577416|gb|EAZ81636.1| ribosome-binding factor A [Algoriphagus sp. PR1]
Length = 128
Score = 113 bits (284), Expect = 9e-24, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 60/120 (50%), Gaps = 4/120 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
S+R + + ++ + + + L+ R +I+++ V +S DL +A VY+S L
Sbjct: 1 MESKRQQKYAKLIQKEIGDIFQKDAKH--LVGRAMITVTHVLVSPDLGLAKVYLSFLL-A 57
Query: 67 SPDRVISALNCNIKFIRGRIGRSL-RNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
P+ +N + K IR ++ + + +++R +PEL F D S + ++ +IP A
Sbjct: 58 DPESTYKLINDHKKEIRHQLAKRIGKSVRVIPELAFFPDDSASYAQHIEKVISDLEIPKA 117
>gi|56751167|ref|YP_171868.1| ribosome-binding factor A [Synechococcus elongatus PCC 6301]
gi|81299166|ref|YP_399374.1| ribosome-binding factor A [Synechococcus elongatus PCC 7942]
gi|61214698|sp|Q5N2X2|RBFA_SYNP6 RecName: Full=Ribosome-binding factor A
gi|123557478|sp|Q31RD2|RBFA_SYNE7 RecName: Full=Ribosome-binding factor A
gi|56686126|dbj|BAD79348.1| ribosome binding factor A [Synechococcus elongatus PCC 6301]
gi|81168047|gb|ABB56387.1| ribosome-binding factor A [Synechococcus elongatus PCC 7942]
Length = 137
Score = 113 bits (284), Expect = 9e-24, Method: Composition-based stats.
Identities = 23/113 (20%), Positives = 57/113 (50%), Gaps = 3/113 (2%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD-V 66
+RR RV ++ + ++++ +D + ++S+++V +S DL+ +++S+
Sbjct: 3 TNRRVERVASLIKREVSQMLMSG-IKDDRVGAGMVSVTDVVVSGDLQHTKIFVSIYGTPE 61
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ + L ++R +G+ +R LR PE+ F D L+ ++ +L+
Sbjct: 62 AKAETMEGLKSAASYVRSELGQRVR-LRRTPEVIFVEDKGLERGTQVISLLEQ 113
>gi|121535263|ref|ZP_01667077.1| ribosome-binding factor A [Thermosinus carboxydivorans Nor1]
gi|121306148|gb|EAX47076.1| ribosome-binding factor A [Thermosinus carboxydivorans Nor1]
Length = 117
Score = 113 bits (283), Expect = 9e-24, Method: Composition-based stats.
Identities = 32/112 (28%), Positives = 58/112 (51%), Gaps = 5/112 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
R ++ E ++ + +IL E +D I ++++ V +S DLR A +++S + D
Sbjct: 5 RVEKIQEFIKQEVSKIIL-TELKDPRIG--FVTVTRVEVSGDLRYAKIFLSLMGSDEEKA 61
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+ L+ + +IR IG+ L +R+VPEL D SLQ ++ L+ K
Sbjct: 62 GTWAGLHRALGYIRTEIGKHL-GIRHVPELSLHLDESLQYSARIQELLNKIK 112
>gi|78048392|ref|YP_364567.1| ribosome-binding factor A [Xanthomonas campestris pv. vesicatoria
str. 85-10]
gi|294624707|ref|ZP_06703374.1| ribosome-binding factor A [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 11122]
gi|294665174|ref|ZP_06730474.1| ribosome-binding factor A [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 10535]
gi|325924692|ref|ZP_08186130.1| ribosome-binding factor A [Xanthomonas perforans 91-118]
gi|123584681|sp|Q3BRP6|RBFA_XANC5 RecName: Full=Ribosome-binding factor A
gi|78036822|emb|CAJ24515.1| ribosomal-binding factor A [Xanthomonas campestris pv. vesicatoria
str. 85-10]
gi|292600980|gb|EFF45050.1| ribosome-binding factor A [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 11122]
gi|292605038|gb|EFF48389.1| ribosome-binding factor A [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 10535]
gi|325544898|gb|EGD16243.1| ribosome-binding factor A [Xanthomonas perforans 91-118]
Length = 130
Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats.
Identities = 30/113 (26%), Positives = 56/113 (49%), Gaps = 4/113 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
K+ R RV +VR L ++ +D + +S+S+V +S DL A V+++
Sbjct: 4 KSFHRTDRVSAQVRRDLGTIVH-AAVRDHGLPS--VSVSDVEISRDLAHAKVFVTALQQE 60
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ L +R ++ R+++ LR+VPEL F YD S+ +++ L+
Sbjct: 61 RSAEAVKGLKEIAGQLRTQLARAMK-LRHVPELHFHYDDSVDRGERIDNLLRD 112
>gi|148240554|ref|YP_001225941.1| ribosome-binding factor A [Synechococcus sp. WH 7803]
gi|166219413|sp|A5GNX9|RBFA_SYNPW RecName: Full=Ribosome-binding factor A
gi|147849093|emb|CAK24644.1| Ribosome-binding factor A [Synechococcus sp. WH 7803]
Length = 140
Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 57/115 (49%), Gaps = 3/115 (2%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD-V 66
RR RV +R ++++ +D + + +ISI++V +S DL+ +++S+ D
Sbjct: 3 PGRRVERVAALIRKETSELLMHG-IRDDRVHQGLISITQVDVSGDLQHCKIFVSVLADPE 61
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+V+ L F+RG +GR L +R PE+ F D L+ + L+ +
Sbjct: 62 GRAQVMEGLQAASSFLRGELGRRL-QMRRAPEVVFHLDRGLEKGASVLGLLGDLE 115
>gi|194098831|ref|YP_002001894.1| ribosome-binding factor A [Neisseria gonorrhoeae NCCP11945]
gi|240013974|ref|ZP_04720887.1| ribosome-binding factor A [Neisseria gonorrhoeae DGI18]
gi|240016416|ref|ZP_04722956.1| ribosome-binding factor A [Neisseria gonorrhoeae FA6140]
gi|240080535|ref|ZP_04725078.1| ribosome-binding factor A [Neisseria gonorrhoeae FA19]
gi|240115852|ref|ZP_04729914.1| ribosome-binding factor A [Neisseria gonorrhoeae PID18]
gi|240118150|ref|ZP_04732212.1| ribosome-binding factor A [Neisseria gonorrhoeae PID1]
gi|240121541|ref|ZP_04734503.1| ribosome-binding factor A [Neisseria gonorrhoeae PID24-1]
gi|240123699|ref|ZP_04736655.1| ribosome-binding factor A [Neisseria gonorrhoeae PID332]
gi|240125889|ref|ZP_04738775.1| ribosome-binding factor A [Neisseria gonorrhoeae SK-92-679]
gi|260440332|ref|ZP_05794148.1| ribosome-binding factor A [Neisseria gonorrhoeae DGI2]
gi|268596667|ref|ZP_06130834.1| ribosome-binding factor A [Neisseria gonorrhoeae FA19]
gi|268601528|ref|ZP_06135695.1| ribosome-binding factor A [Neisseria gonorrhoeae PID18]
gi|268603867|ref|ZP_06138034.1| ribosome-binding factor A [Neisseria gonorrhoeae PID1]
gi|268682331|ref|ZP_06149193.1| ribosome-binding factor A [Neisseria gonorrhoeae PID332]
gi|268684488|ref|ZP_06151350.1| ribosome-binding factor A [Neisseria gonorrhoeae SK-92-679]
gi|291043625|ref|ZP_06569341.1| ribosome-binding factor A [Neisseria gonorrhoeae DGI2]
gi|238690204|sp|B4RMA9|RBFA_NEIG2 RecName: Full=Ribosome-binding factor A
gi|193934121|gb|ACF29945.1| ribosome-binding factor A [Neisseria gonorrhoeae NCCP11945]
gi|268550455|gb|EEZ45474.1| ribosome-binding factor A [Neisseria gonorrhoeae FA19]
gi|268585659|gb|EEZ50335.1| ribosome-binding factor A [Neisseria gonorrhoeae PID18]
gi|268587998|gb|EEZ52674.1| ribosome-binding factor A [Neisseria gonorrhoeae PID1]
gi|268622615|gb|EEZ55015.1| ribosome-binding factor A [Neisseria gonorrhoeae PID332]
gi|268624772|gb|EEZ57172.1| ribosome-binding factor A [Neisseria gonorrhoeae SK-92-679]
gi|291012088|gb|EFE04077.1| ribosome-binding factor A [Neisseria gonorrhoeae DGI2]
Length = 123
Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 54/117 (46%), Gaps = 4/117 (3%)
Query: 3 NKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL 62
K + R RV E++ L ++ +D I+I+EV ++ D ATV+ ++
Sbjct: 2 RKPQRGYARQDRVKEQIMRELAE-LVRTGLKDPR--AGFITINEVEVTRDYSHATVFYTV 58
Query: 63 PLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ + L +R + + ++ + +PEL F+YD SL+ L+AL+
Sbjct: 59 LNQDTREITEEVLEHARGHLRSELSKRIKLFK-IPELHFKYDESLERGMSLSALIDQ 114
>gi|160892793|ref|ZP_02073583.1| hypothetical protein CLOL250_00324 [Clostridium sp. L2-50]
gi|156865834|gb|EDO59265.1| hypothetical protein CLOL250_00324 [Clostridium sp. L2-50]
Length = 129
Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats.
Identities = 33/110 (30%), Positives = 55/110 (50%), Gaps = 4/110 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
KNS + R+ EV+ L +I E +D I+ + S+ E ++ DL+ YIS+ D
Sbjct: 3 KNSVKNTRINAEVQRELSRIISR-EIKDPRINP-MTSVVEAVVTPDLKYCKAYISVLGDQ 60
Query: 67 SP-DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNA 115
+ + LN + FIR + S+ NLR PE+ F D S++ ++
Sbjct: 61 DSVNSTLEGLNSAMGFIRRELAHSI-NLRNTPEITFIMDQSIEYGVTMSK 109
>gi|323343542|ref|ZP_08083769.1| ribosome-binding factor A [Prevotella oralis ATCC 33269]
gi|323095361|gb|EFZ37935.1| ribosome-binding factor A [Prevotella oralis ATCC 33269]
Length = 111
Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats.
Identities = 32/108 (29%), Positives = 55/108 (50%), Gaps = 4/108 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
R R+ ++ L + + Q R++ +IS++ +S DL + T Y+S+ D
Sbjct: 5 RQNRIARLLQKELSLIFQS---QTRMMHGVMISVTRARVSPDLSICTAYLSIFPSEKSDE 61
Query: 71 VISALNCNIKFIRGRIGRSLRN-LRYVPELRFRYDTSLQSYWKLNALM 117
+I + N K IR +G + N LR +PELRF D SL +++ L+
Sbjct: 62 IIHNITKNEKTIRYELGTRVHNQLRIIPELRFFIDDSLDYIERIDELL 109
>gi|309791822|ref|ZP_07686309.1| ribosome-binding factor A [Oscillochloris trichoides DG6]
gi|308226144|gb|EFO79885.1| ribosome-binding factor A [Oscillochloris trichoides DG6]
Length = 143
Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 60/117 (51%), Gaps = 4/117 (3%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
P + +R ++G+ ++ L VI +E +D + +++ V +S DL+ ATV IS+ D
Sbjct: 17 PMSKQRLQQIGDRIQQVLGAVI-QSEIKDPRVG--FATVTGVEVSADLQHATVRISIMGD 73
Query: 66 -VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
++ L F+R R+ LR++R+VPEL DTSL + ++ +
Sbjct: 74 AEEQAATMAGLQRARSFLRRRVADELRHMRFVPELHLVQDTSLDYTIHIEQVLRQVE 130
>gi|260885919|ref|ZP_05736166.2| ribosome-binding factor A [Prevotella tannerae ATCC 51259]
gi|260851001|gb|EEX70870.1| ribosome-binding factor A [Prevotella tannerae ATCC 51259]
Length = 134
Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats.
Identities = 28/114 (24%), Positives = 57/114 (50%), Gaps = 4/114 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
+ R ++ ++ L ++ Q ++S+S V +S DL V Y+S+
Sbjct: 24 METTRQQKIERLIQKELSDMLQRQTQQAP---GVLVSVSRVRISPDLSVCRGYLSVFPSE 80
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRN-LRYVPELRFRYDTSLQSYWKLNALMCL 119
+ +++ +N N+K +R +G+ +R+ LR +PEL+F D SL ++ L+
Sbjct: 81 RGEEIVANINANVKTVRFELGKRVRHQLRIIPELKFFIDDSLDYIEHIDELLKQ 134
>gi|281425967|ref|ZP_06256880.1| ribosome-binding factor A [Prevotella oris F0302]
gi|299142405|ref|ZP_07035537.1| ribosome-binding factor A [Prevotella oris C735]
gi|281399860|gb|EFB30691.1| ribosome-binding factor A [Prevotella oris F0302]
gi|298576127|gb|EFI48001.1| ribosome-binding factor A [Prevotella oris C735]
Length = 111
Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats.
Identities = 31/108 (28%), Positives = 57/108 (52%), Gaps = 4/108 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
R R+ ++ L + Q R++ ++S++ V +S DL + T Y+S+ +
Sbjct: 5 RQNRISRLLQKELAIIFQE---QTRMMHGVMVSVTRVKISPDLSICTAYLSVFPSEKGEE 61
Query: 71 VISALNCNIKFIRGRIGRSLRN-LRYVPELRFRYDTSLQSYWKLNALM 117
++ + N+K IR +GR + N LR +PELRF D SL +++ L+
Sbjct: 62 IVRNVTANMKTIRYELGRRVHNQLRIIPELRFFIDDSLDYIERIDELL 109
>gi|88807131|ref|ZP_01122643.1| possible Ribosome-binding factor A [Synechococcus sp. WH 7805]
gi|88788345|gb|EAR19500.1| possible Ribosome-binding factor A [Synechococcus sp. WH 7805]
Length = 140
Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 57/115 (49%), Gaps = 3/115 (2%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD-V 66
RR RV +R ++++ +D + + +ISI+ V +S DL+ +++S+ D
Sbjct: 3 PGRRVERVAALIRKETSELLIHG-IRDERVHQGLISITGVEVSGDLQHCKIFVSVLADPE 61
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+V+ L F+RG +GR L+ +R PE+ F D L+ + L+ +
Sbjct: 62 GKAQVMDGLQAASSFLRGELGRRLK-MRRAPEVVFHLDRGLEKGASVLGLLGDLE 115
>gi|21243415|ref|NP_642997.1| ribosome-binding factor A [Xanthomonas axonopodis pv. citri str.
306]
gi|24418644|sp|Q8PJ56|RBFA_XANAC RecName: Full=Ribosome-binding factor A
gi|21108966|gb|AAM37533.1| ribosomal-binding factor A [Xanthomonas axonopodis pv. citri str.
306]
Length = 130
Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats.
Identities = 30/113 (26%), Positives = 56/113 (49%), Gaps = 4/113 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
K+ R RV +VR L ++ +D + +S+S+V +S DL A V+++
Sbjct: 4 KSFHRTDRVSAQVRRDLGTIVH-AAVRDNGLPS--VSVSDVEISRDLAHAKVFVTALQQE 60
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ L +R ++ R+++ LR+VPEL F YD S+ +++ L+
Sbjct: 61 RSAEAVKGLKEIAGQLRTQLARAMK-LRHVPELHFHYDDSVDRGERIDNLLRD 112
>gi|255011427|ref|ZP_05283553.1| putative ribosome-binding factor A [Bacteroides fragilis 3_1_12]
gi|313149243|ref|ZP_07811436.1| ribosome-binding factor A [Bacteroides fragilis 3_1_12]
gi|313138010|gb|EFR55370.1| ribosome-binding factor A [Bacteroides fragilis 3_1_12]
Length = 110
Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats.
Identities = 32/112 (28%), Positives = 61/112 (54%), Gaps = 4/112 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
+ R ++ ++ L + L Q + + ++S+S V +S D+ +A VY+S+
Sbjct: 1 METTRQNKIARLLQKELSEIFL---LQTKAMPGVLVSVSAVRISPDMSIARVYLSVFPSD 57
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRN-LRYVPELRFRYDTSLQSYWKLNALM 117
+ ++ +N N+K IR +G +R+ LR +PEL+F D SL K++AL+
Sbjct: 58 KSEEMVKNINNNMKSIRFELGTRVRHQLRIIPELKFFVDDSLDYIEKIDALL 109
>gi|150003447|ref|YP_001298191.1| ribosome-binding factor A [Bacteroides vulgatus ATCC 8482]
gi|212695394|ref|ZP_03303522.1| hypothetical protein BACDOR_04943 [Bacteroides dorei DSM 17855]
gi|237711569|ref|ZP_04542050.1| ribosome-binding factor A [Bacteroides sp. 9_1_42FAA]
gi|254881255|ref|ZP_05253965.1| ribosome-binding factor A [Bacteroides sp. 4_3_47FAA]
gi|265752997|ref|ZP_06088566.1| ribosome-binding factor A [Bacteroides sp. 3_1_33FAA]
gi|294777671|ref|ZP_06743122.1| ribosome-binding factor A [Bacteroides vulgatus PC510]
gi|319640257|ref|ZP_07994982.1| ribosome-binding factor A [Bacteroides sp. 3_1_40A]
gi|149931871|gb|ABR38569.1| ribosome-binding factor A [Bacteroides vulgatus ATCC 8482]
gi|212662029|gb|EEB22603.1| hypothetical protein BACDOR_04943 [Bacteroides dorei DSM 17855]
gi|229454264|gb|EEO59985.1| ribosome-binding factor A [Bacteroides sp. 9_1_42FAA]
gi|254834048|gb|EET14357.1| ribosome-binding factor A [Bacteroides sp. 4_3_47FAA]
gi|263236183|gb|EEZ21678.1| ribosome-binding factor A [Bacteroides sp. 3_1_33FAA]
gi|294448739|gb|EFG17288.1| ribosome-binding factor A [Bacteroides vulgatus PC510]
gi|317388032|gb|EFV68886.1| ribosome-binding factor A [Bacteroides sp. 3_1_40A]
Length = 111
Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats.
Identities = 30/112 (26%), Positives = 60/112 (53%), Gaps = 4/112 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
+ R ++ ++ L + L Q + ++ ++S+S V +S D+ +A VY+S+
Sbjct: 1 METTRQNKISRLIQKELSEIFL---LQTKSMNGVLVSVSAVRISPDMSIARVYLSVFPSE 57
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRN-LRYVPELRFRYDTSLQSYWKLNALM 117
++ +N N+K IR +G +R+ LR +PEL+F D SL +++ L+
Sbjct: 58 RSQEIVKNINDNMKSIRYELGTRVRHQLRIIPELKFFVDDSLDYAERIDELL 109
>gi|289665192|ref|ZP_06486773.1| ribosome-binding factor A [Xanthomonas campestris pv. vasculorum
NCPPB702]
gi|289667362|ref|ZP_06488437.1| ribosome-binding factor A [Xanthomonas campestris pv. musacearum
NCPPB4381]
Length = 130
Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 30/113 (26%), Positives = 56/113 (49%), Gaps = 4/113 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
K+ R RV +VR L ++ +D + +S+S+V +S DL A V+++
Sbjct: 4 KSFHRTDRVSAQVRRDLGTIVH-AAVRDHGLPS--VSVSDVEISRDLAHAKVFVTALQQE 60
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ L +R ++ R+++ LR+VPEL F YD S+ +++ L+
Sbjct: 61 RSAEAVKGLKEIAGQLRTQLARAMK-LRHVPELHFHYDDSVDRGERIDNLLRD 112
>gi|160884142|ref|ZP_02065145.1| hypothetical protein BACOVA_02119 [Bacteroides ovatus ATCC 8483]
gi|237717204|ref|ZP_04547685.1| ribosome-binding factor A [Bacteroides sp. D1]
gi|237721800|ref|ZP_04552281.1| ribosome-binding factor A [Bacteroides sp. 2_2_4]
gi|260173073|ref|ZP_05759485.1| putative ribosome-binding factor A [Bacteroides sp. D2]
gi|262405972|ref|ZP_06082522.1| ribosome-binding factor A [Bacteroides sp. 2_1_22]
gi|293372464|ref|ZP_06618848.1| ribosome-binding factor A [Bacteroides ovatus SD CMC 3f]
gi|294647944|ref|ZP_06725496.1| ribosome-binding factor A [Bacteroides ovatus SD CC 2a]
gi|294806342|ref|ZP_06765189.1| ribosome-binding factor A [Bacteroides xylanisolvens SD CC 1b]
gi|298479976|ref|ZP_06998175.1| ribosome-binding factor A [Bacteroides sp. D22]
gi|299144799|ref|ZP_07037867.1| ribosome-binding factor A [Bacteroides sp. 3_1_23]
gi|315921350|ref|ZP_07917590.1| ribosome-binding factor A [Bacteroides sp. D2]
gi|156110484|gb|EDO12229.1| hypothetical protein BACOVA_02119 [Bacteroides ovatus ATCC 8483]
gi|229443187|gb|EEO48978.1| ribosome-binding factor A [Bacteroides sp. D1]
gi|229448669|gb|EEO54460.1| ribosome-binding factor A [Bacteroides sp. 2_2_4]
gi|262356847|gb|EEZ05937.1| ribosome-binding factor A [Bacteroides sp. 2_1_22]
gi|292632647|gb|EFF51241.1| ribosome-binding factor A [Bacteroides ovatus SD CMC 3f]
gi|292636852|gb|EFF55318.1| ribosome-binding factor A [Bacteroides ovatus SD CC 2a]
gi|294446598|gb|EFG15218.1| ribosome-binding factor A [Bacteroides xylanisolvens SD CC 1b]
gi|295085580|emb|CBK67103.1| ribosome-binding factor A [Bacteroides xylanisolvens XB1A]
gi|298273785|gb|EFI15347.1| ribosome-binding factor A [Bacteroides sp. D22]
gi|298515290|gb|EFI39171.1| ribosome-binding factor A [Bacteroides sp. 3_1_23]
gi|313695225|gb|EFS32060.1| ribosome-binding factor A [Bacteroides sp. D2]
Length = 110
Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 31/112 (27%), Positives = 61/112 (54%), Gaps = 4/112 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
+ R ++ ++ L + L Q + + ++S+S V +S D+ +A VY+S+
Sbjct: 1 METTRQNKISRLLQKELSEIFL---LQTKSMPGTLVSVSAVRISPDMSIARVYLSVFPSE 57
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRN-LRYVPELRFRYDTSLQSYWKLNALM 117
+ ++ +N N+K IR +G +R+ LR +PEL+F D SL K+++L+
Sbjct: 58 KAEEMVKNINNNMKSIRYELGTRVRHQLRIIPELKFFVDDSLDYIEKIDSLL 109
>gi|291546822|emb|CBL19930.1| ribosome-binding factor A [Ruminococcus sp. SR1/5]
Length = 122
Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 4/114 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
KNS + RV V+ L +I +E +D I + S++ V ++ DL+ YIS+ +
Sbjct: 3 KNSIKNTRVNGAVQKELSTIIH-SEIKDPRIHP-MTSVTAVEVAPDLKTCKAYISVLGEK 60
Query: 67 S-PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
D + L ++R + R L NLR PE+RF D S++ ++ +
Sbjct: 61 QAKDSTLRGLKNAEGYVRRELARRL-NLRNTPEIRFVLDESIEYGVNMSKKIND 113
>gi|15677238|ref|NP_274391.1| ribosome-binding factor A [Neisseria meningitidis MC58]
gi|121635079|ref|YP_975324.1| ribosome-binding factor A [Neisseria meningitidis FAM18]
gi|20978660|sp|Q9JYY2|RBFA_NEIMB RecName: Full=Ribosome-binding factor A
gi|166219381|sp|A1KUJ5|RBFA_NEIMF RecName: Full=Ribosome-binding factor A
gi|7226619|gb|AAF41747.1| ribosome-binding factor A [Neisseria meningitidis MC58]
gi|120866785|emb|CAM10538.1| ribosomal-binding factor A [Neisseria meningitidis FAM18]
gi|316984188|gb|EFV63166.1| ribosome-binding factor A [Neisseria meningitidis H44/76]
gi|325132434|gb|EGC55127.1| ribosome-binding factor A [Neisseria meningitidis M6190]
gi|325134391|gb|EGC57036.1| ribosome-binding factor A [Neisseria meningitidis M13399]
gi|325138422|gb|EGC60990.1| ribosome-binding factor A [Neisseria meningitidis ES14902]
gi|325140407|gb|EGC62928.1| ribosome-binding factor A [Neisseria meningitidis CU385]
gi|325143448|gb|EGC65774.1| ribosome-binding factor A [Neisseria meningitidis M01-240013]
gi|325200006|gb|ADY95461.1| ribosome-binding factor A [Neisseria meningitidis H44/76]
gi|325201918|gb|ADY97372.1| ribosome-binding factor A [Neisseria meningitidis M01-240149]
gi|325205860|gb|ADZ01313.1| ribosome-binding factor A [Neisseria meningitidis M04-240196]
gi|325208331|gb|ADZ03783.1| ribosome-binding factor A [Neisseria meningitidis NZ-05/33]
Length = 123
Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 53/117 (45%), Gaps = 4/117 (3%)
Query: 3 NKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL 62
K + R RV E++ L ++ +D I+++EV ++ D ATV+ ++
Sbjct: 2 RKPQRGYARQDRVKEQIMRELAE-LVRTGLKDPR--AGFITVNEVEVTRDYSHATVFYTI 58
Query: 63 PLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ + L +R + + ++ + PEL F+YD SL+ L+AL+
Sbjct: 59 LNQDAREITEEVLEHARGHLRSELAKRIKLFK-TPELHFKYDESLERGLNLSALIDQ 114
>gi|284044676|ref|YP_003395016.1| ribosome-binding factor A [Conexibacter woesei DSM 14684]
gi|283948897|gb|ADB51641.1| ribosome-binding factor A [Conexibacter woesei DSM 14684]
Length = 121
Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 28/109 (25%), Positives = 53/109 (48%), Gaps = 5/109 (4%)
Query: 12 ALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS-PDR 70
RV E VR+ L I + +D + ++++ V S DLR A VY+S+ D
Sbjct: 1 MRRVDEAVRAVLSDAITQ-DLKDPRVG--FVTVTAVRTSSDLRHARVYVSVLGDEETRAE 57
Query: 71 VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
++ L +++ + R +R ++Y PE+ F YD S+ ++ ++
Sbjct: 58 CLAGLRSATGYLQRLVAREVR-MKYTPEIVFAYDDSIDRGMRITEILRD 105
>gi|304414230|ref|ZP_07395598.1| 30S ribosome binding factor [Candidatus Regiella insecticola LSR1]
gi|304283444|gb|EFL91840.1| 30S ribosome binding factor [Candidatus Regiella insecticola LSR1]
Length = 138
Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 59/121 (48%), Gaps = 11/121 (9%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL- 64
+ RA RV +E++ + +IL E +D + + ++S V +S DL A V+++
Sbjct: 2 AQEFSRAQRVSQELQKEIA-IILQREIKDPRVG--MATVSGVKLSRDLVYAKVFVTFLNT 58
Query: 65 ---DVSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
D ++ I AL +IR +G+++R LR VP L F YD S ++ L+
Sbjct: 59 LTQDDDQKKIKDGIKALQDASGYIRTLLGKAMR-LRVVPTLTFDYDKSQIEGVRIANLVT 117
Query: 119 L 119
Sbjct: 118 N 118
>gi|59801071|ref|YP_207783.1| ribosome-binding factor A [Neisseria gonorrhoeae FA 1090]
gi|75432521|sp|Q5F8W6|RBFA_NEIG1 RecName: Full=Ribosome-binding factor A
gi|59717966|gb|AAW89371.1| putative ribosomal-binding factor A [Neisseria gonorrhoeae FA 1090]
Length = 123
Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 54/117 (46%), Gaps = 4/117 (3%)
Query: 3 NKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL 62
K + R RV E++ L ++ +D I+I+EV ++ D ATV+ ++
Sbjct: 2 KKPQRGYARQDRVKEQIMRELAE-LVRTGLKDPR--AGFITINEVEITRDYSHATVFYTV 58
Query: 63 PLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ + L +R + + ++ + +PEL F+YD SL+ L+AL+
Sbjct: 59 LNQDTREITEEVLEHARGHLRSELSKRIKLFK-IPELHFKYDESLERGMSLSALIDQ 114
>gi|257894719|ref|ZP_05674372.1| ribosome-binding factor A [Enterococcus faecium 1,231,408]
gi|257831098|gb|EEV57705.1| ribosome-binding factor A [Enterococcus faecium 1,231,408]
Length = 113
Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 28/111 (25%), Positives = 53/111 (47%), Gaps = 6/111 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD--VSP 68
R RVG+E+ + ++ + +D + ++I++V ++ DL+ AT+Y S+ D
Sbjct: 5 RDRRVGQEILKEVNDIL-RKKVRDPRVEN--VTITDVKVTGDLQQATIYYSILSDLASDK 61
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ LN IR +G +L + PEL F D S+ ++ L+
Sbjct: 62 KKAQDGLNKASGLIRRELGHNLSIYK-TPELFFELDESVVYGNHIDELLRD 111
>gi|167766531|ref|ZP_02438584.1| hypothetical protein CLOSS21_01037 [Clostridium sp. SS2/1]
gi|317498931|ref|ZP_07957214.1| ribosome-binding factor A [Lachnospiraceae bacterium 5_1_63FAA]
gi|167711654|gb|EDS22233.1| hypothetical protein CLOSS21_01037 [Clostridium sp. SS2/1]
gi|291558570|emb|CBL37370.1| ribosome-binding factor A [butyrate-producing bacterium SSC/2]
gi|316893764|gb|EFV15963.1| ribosome-binding factor A [Lachnospiraceae bacterium 5_1_63FAA]
Length = 123
Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 31/110 (28%), Positives = 55/110 (50%), Gaps = 4/110 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-D 65
KNS + R+ EV+ L +I E +D I+ + S+ + ++ DL+ YIS+ D
Sbjct: 3 KNSIKNTRINGEVQRELSRIISR-EIKDPRIAP-MTSVVDAVVTSDLKQCKAYISVLGND 60
Query: 66 VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNA 115
+ + LN + +IR + S+ NLR PE+ F D S++ ++
Sbjct: 61 EEKEETMKGLNSAVGYIRRELAHSI-NLRNTPEITFILDDSIEYGVNMSK 109
>gi|51473624|ref|YP_067381.1| ribosome-binding factor A [Rickettsia typhi str. Wilmington]
gi|61214908|sp|Q68WU3|RBFA_RICTY RecName: Full=Ribosome-binding factor A
gi|51459936|gb|AAU03899.1| ribosome-binding factor A [Rickettsia typhi str. Wilmington]
Length = 127
Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 58/120 (48%), Gaps = 2/120 (1%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
MK NS R ++ + L+ ++ + DR + ++I+++ ++ DL++A Y
Sbjct: 1 MKKLTKTNSHRQQKLASIINEVLIEILKRGKMLDRRLFDCPLTITKIVVTADLKIANCYF 60
Query: 61 SLPLDV-SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ + ++ ALN + IR I + N+++ PE+RF YD + K+ L+
Sbjct: 61 FPFNTKLTFNDIMDALNNSKHAIRNFITNKI-NMKFSPEIRFHYDYGFDNAIKIEKLLKS 119
>gi|294788248|ref|ZP_06753491.1| ribosome-binding factor A [Simonsiella muelleri ATCC 29453]
gi|294483679|gb|EFG31363.1| ribosome-binding factor A [Simonsiella muelleri ATCC 29453]
Length = 123
Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 50/119 (42%), Gaps = 5/119 (4%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
M R RV E+V L +I +D +I+I++V ++ D ATV+
Sbjct: 1 MPKPQRNGYARIDRVKEQVMRELAELI-RTGLKDPR--AGLITINDVEVTRDYSHATVFY 57
Query: 61 SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
++ AL F+R + + + R PEL F+YD SL+ L L+
Sbjct: 58 TVLSG-DRTASAEALEHAKGFLRSELAKRISVFR-TPELHFQYDESLERGVNLAHLIDQ 114
>gi|255689941|ref|ZP_05413616.1| ribosome-binding factor A [Bacteroides finegoldii DSM 17565]
gi|260624547|gb|EEX47418.1| ribosome-binding factor A [Bacteroides finegoldii DSM 17565]
Length = 110
Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 31/112 (27%), Positives = 61/112 (54%), Gaps = 4/112 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
+ R ++ ++ L + L Q + + ++S+S V +S D+ +A VY+S+
Sbjct: 1 METTRQNKISRLLQKELSEIFL---LQTKAMPGVLVSVSAVRISPDMSIARVYLSVFPSE 57
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRN-LRYVPELRFRYDTSLQSYWKLNALM 117
+ ++ +N N+K IR +G +R+ LR +PEL+F D SL K+++L+
Sbjct: 58 KAEEIVKNVNDNMKTIRYELGTRVRHQLRIIPELKFFVDDSLDYIEKIDSLL 109
>gi|332976698|gb|EGK13536.1| ribosome-binding factor A [Psychrobacter sp. 1501(2011)]
Length = 141
Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 55/118 (46%), Gaps = 11/118 (9%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV-- 66
++R R+G++++ L V++ +E D + ++IS V +S DL A +Y+++
Sbjct: 2 NQRLQRLGDQIQRELA-VLIRDEINDPRL-TGFVTISSVKVSSDLGYADIYVTVMEPELN 59
Query: 67 ------SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
S + + LN F+R + SL+ R P LRF YD + L+
Sbjct: 60 DAMSKHSHEESLQVLNKAAGFLRTELSHSLKT-RTTPRLRFHYDEVTAQGNYMMDLIN 116
>gi|237725978|ref|ZP_04556459.1| ribosome-binding factor A [Bacteroides sp. D4]
gi|229435786|gb|EEO45863.1| ribosome-binding factor A [Bacteroides dorei 5_1_36/D4]
Length = 111
Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 60/112 (53%), Gaps = 4/112 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
+ R ++ ++ L + L Q + ++ ++S+S V ++ D+ +A VY+S+
Sbjct: 1 METTRQNKISRLIQKELSEIFL---LQTKSMNGVLVSVSAVRITPDMSIARVYLSVFPSE 57
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRN-LRYVPELRFRYDTSLQSYWKLNALM 117
++ +N N+K IR +G +R+ LR +PEL+F D SL +++ L+
Sbjct: 58 RSQEIVKNINDNMKSIRYELGTRVRHQLRIIPELKFFVDDSLDYAERIDELL 109
>gi|325142573|gb|EGC64969.1| ribosome-binding factor A [Neisseria meningitidis 961-5945]
gi|325198517|gb|ADY93973.1| ribosome-binding factor A [Neisseria meningitidis G2136]
Length = 123
Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 54/117 (46%), Gaps = 4/117 (3%)
Query: 3 NKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL 62
K + R RV E++ L ++ +D I+++EV ++ D ATV+ ++
Sbjct: 2 RKPQRGYARQDRVKEQIMRELAE-LVRTRLKDPR--AGFITVNEVEVTRDYSHATVFYTI 58
Query: 63 PLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ + L +R + + ++ + +PEL F+YD SL+ L+AL+
Sbjct: 59 LNQDAREITEEVLEHARGHLRSELAKRIKLFK-IPELHFKYDESLERGMNLSALIDQ 114
>gi|255080072|ref|XP_002503616.1| predicted protein [Micromonas sp. RCC299]
gi|226518883|gb|ACO64874.1| predicted protein [Micromonas sp. RCC299]
Length = 252
Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 28/133 (21%), Positives = 68/133 (51%), Gaps = 13/133 (9%)
Query: 8 NSRRALRVGEEVRSALMWVIL-NNEFQD----------RLISRDVISISEVCMSVDLRVA 56
N RR +V +++R + ++ + + +D + ++++++V +S DL+V
Sbjct: 52 NQRRVAKVQQQMRREISNMMQTDKKLRDMVYPEERMGVDNVMSCMVTVADVEVSGDLQVV 111
Query: 57 TVYISLPLDV-SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNA 115
V++S+ D I+ L ++R IG+ + +LR P++RF YD S + ++++
Sbjct: 112 KVFVSILGDERGKKNAINGLKKMEGYVRRNIGKRV-SLRLTPDIRFVYDDSFERGQRVSS 170
Query: 116 LMCLPKIPVALEK 128
L+ ++ + +
Sbjct: 171 LLDELRVEREVRE 183
>gi|329905068|ref|ZP_08273996.1| Ribosome-binding factor A [Oxalobacteraceae bacterium IMCC9480]
gi|327547740|gb|EGF32516.1| Ribosome-binding factor A [Oxalobacteraceae bacterium IMCC9480]
Length = 129
Score = 112 bits (282), Expect = 2e-23, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 61/119 (51%), Gaps = 6/119 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP-- 68
R +RV ++++ L ++ E +D + +I+++EV ++ D A V+ ++ D
Sbjct: 11 RGIRVADQIQRDLAEIVAY-ELKDPRVG--MITVTEVQLTPDYAHAKVFFTMLSDDKEAI 67
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALE 127
++ L FIRG++GR L ++ +PEL F +DTS +L+ L+ A +
Sbjct: 68 KNTVTGLKIASGFIRGQLGRRL-HVHTLPELHFVHDTSTARGMELSKLIDEANATRAKD 125
>gi|121998527|ref|YP_001003314.1| ribosome-binding factor A [Halorhodospira halophila SL1]
gi|166218443|sp|A1WXV0|RBFA_HALHL RecName: Full=Ribosome-binding factor A
gi|121589932|gb|ABM62512.1| ribosome-binding factor A [Halorhodospira halophila SL1]
Length = 126
Score = 112 bits (282), Expect = 2e-23, Method: Composition-based stats.
Identities = 38/125 (30%), Positives = 64/125 (51%), Gaps = 6/125 (4%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP-- 63
K+ R+ R+ E++R L VI ++ D + ++ISEV +S DL ATVY+++
Sbjct: 2 AKDYPRSRRIAEQLRRELAEVI-RDDVDDPRVGS--VTISEVQVSRDLAHATVYVTVLGA 58
Query: 64 LDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIP 123
I LN F+R ++ R +R + P LRF +DT+ +L+AL+ P
Sbjct: 59 EAAEAQAGIDILNKAHGFLRSQVARRIRA-KRTPSLRFLHDTAFDRGARLSALIDEVAPP 117
Query: 124 VALEK 128
A ++
Sbjct: 118 PADDE 122
>gi|331701350|ref|YP_004398309.1| ribosome-binding factor A [Lactobacillus buchneri NRRL B-30929]
gi|329128693|gb|AEB73246.1| Ribosome-binding factor A [Lactobacillus buchneri NRRL B-30929]
Length = 117
Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats.
Identities = 29/110 (26%), Positives = 55/110 (50%), Gaps = 6/110 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
R R+ +E++ + ++L +D + ++++ V ++ DL+ AT+Y S+ D D
Sbjct: 5 RVGRLEQEIQKEVNDILLKR-VRDPRVQG--VTLTGVEVTGDLQQATIYYSILSDKKEDE 61
Query: 71 --VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
L IRG +G L + PE++F DTS+Q K++ L+
Sbjct: 62 ETTAKGLEKASGLIRGELGHRLSIYK-TPEIKFELDTSVQYGDKIDRLIN 110
>gi|53715758|ref|YP_101750.1| ribosome-binding factor A [Bacteroides fragilis YCH46]
gi|60683689|ref|YP_213833.1| putative ribosome-binding factor A [Bacteroides fragilis NCTC 9343]
gi|253566429|ref|ZP_04843882.1| ribosome-binding factor A [Bacteroides sp. 3_2_5]
gi|265767300|ref|ZP_06094966.1| ribosome-binding factor A [Bacteroides sp. 2_1_16]
gi|52218623|dbj|BAD51216.1| ribosome-binding factor A [Bacteroides fragilis YCH46]
gi|60495123|emb|CAH09944.1| putative ribosome-binding factor A [Bacteroides fragilis NCTC 9343]
gi|251944601|gb|EES85076.1| ribosome-binding factor A [Bacteroides sp. 3_2_5]
gi|263252605|gb|EEZ24117.1| ribosome-binding factor A [Bacteroides sp. 2_1_16]
gi|301165202|emb|CBW24773.1| putative ribosome-binding factor A [Bacteroides fragilis 638R]
Length = 110
Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats.
Identities = 32/112 (28%), Positives = 61/112 (54%), Gaps = 4/112 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
+ R ++ ++ L + L Q + + ++S+S V +S D+ +A VY+S+
Sbjct: 1 METTRQNKISRLLQKELSEIFL---LQTKAMPGVLVSVSAVRISPDMSIARVYLSIFPSE 57
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRN-LRYVPELRFRYDTSLQSYWKLNALM 117
+ ++ +N N+K IR +G +R+ LR +PEL+F D SL K++AL+
Sbjct: 58 KSEEMVKNINNNMKSIRFELGTRVRHQLRIIPELKFFVDDSLDYIEKIDALL 109
>gi|160913526|ref|ZP_02076217.1| hypothetical protein EUBDOL_00002 [Eubacterium dolichum DSM 3991]
gi|158434078|gb|EDP12367.1| hypothetical protein EUBDOL_00002 [Eubacterium dolichum DSM 3991]
Length = 120
Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats.
Identities = 27/107 (25%), Positives = 53/107 (49%), Gaps = 5/107 (4%)
Query: 12 ALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRV 71
++ ++ + +I + +D I I+I++V +S DL +A VY+S + +
Sbjct: 13 TEKIAGIIQKEVSEII-QFQLKDPKIG--FITITDVVVSGDLSIAKVYVSFLGQKAREAA 69
Query: 72 -ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ AL + FIR + + + +R VP L F D SL+ K+ ++
Sbjct: 70 GMKALERSKGFIRSELAKRM-TIRKVPSLVFLIDDSLEKGNKIENII 115
>gi|309775441|ref|ZP_07670444.1| ribosome-binding factor A [Erysipelotrichaceae bacterium 3_1_53]
gi|308916830|gb|EFP62567.1| ribosome-binding factor A [Erysipelotrichaceae bacterium 3_1_53]
Length = 112
Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats.
Identities = 25/108 (23%), Positives = 54/108 (50%), Gaps = 5/108 (4%)
Query: 12 ALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRV 71
A ++ ++ + +I +D I I+I++V ++ DL +A +Y+S +
Sbjct: 5 AEKIAGIIQKEISEII-QFSLKDPKIG--FITITDVTVTNDLSIAKIYVSFLGQKPREEA 61
Query: 72 -ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ AL + ++R + + + +R VPEL F+ D SL+ K+ ++
Sbjct: 62 GMKALERSKGYLRSELAKRM-TIRKVPELIFKLDDSLERGNKIERIIS 108
>gi|226226963|ref|YP_002761069.1| ribosome-binding factor A [Gemmatimonas aurantiaca T-27]
gi|259551997|sp|C1A8N9|RBFA_GEMAT RecName: Full=Ribosome-binding factor A
gi|226090154|dbj|BAH38599.1| ribosome-binding factor A [Gemmatimonas aurantiaca T-27]
Length = 146
Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 59/120 (49%), Gaps = 4/120 (3%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV-SP 68
RR RV E +R + + +D I R ++++ V ++ DLR ATV++SL D
Sbjct: 5 RRPDRVAEAIREEVATFLSEGA-KDPRI-RAFVTVTAVEVTRDLRHATVFVSLMGDDADK 62
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALEK 128
+ L +R ++G+SLR LR PE+ FR D S+ ++ L+ + ++
Sbjct: 63 KSTTAGLASVASHLRSQLGKSLR-LRSAPEIHFRTDESVARASRIEHLLAKIRDEREAQE 121
>gi|257878522|ref|ZP_05658175.1| ribosome-binding factor A [Enterococcus faecium 1,230,933]
gi|257884346|ref|ZP_05663999.1| ribosome-binding factor A [Enterococcus faecium 1,231,501]
gi|261207405|ref|ZP_05922091.1| ribosome-binding factor A [Enterococcus faecium TC 6]
gi|289566672|ref|ZP_06447089.1| ribosome-binding factor A [Enterococcus faecium D344SRF]
gi|293556653|ref|ZP_06675218.1| ribosome-binding factor A [Enterococcus faecium E1039]
gi|293567727|ref|ZP_06679069.1| ribosome-binding factor A [Enterococcus faecium E1071]
gi|294613933|ref|ZP_06693868.1| ribosome-binding factor A [Enterococcus faecium E1636]
gi|294618719|ref|ZP_06698251.1| ribosome-binding factor A [Enterococcus faecium E1679]
gi|257812750|gb|EEV41508.1| ribosome-binding factor A [Enterococcus faecium 1,230,933]
gi|257820184|gb|EEV47332.1| ribosome-binding factor A [Enterococcus faecium 1,231,501]
gi|260078296|gb|EEW66001.1| ribosome-binding factor A [Enterococcus faecium TC 6]
gi|289161531|gb|EFD09414.1| ribosome-binding factor A [Enterococcus faecium D344SRF]
gi|291589570|gb|EFF21376.1| ribosome-binding factor A [Enterococcus faecium E1071]
gi|291593208|gb|EFF24782.1| ribosome-binding factor A [Enterococcus faecium E1636]
gi|291595032|gb|EFF26377.1| ribosome-binding factor A [Enterococcus faecium E1679]
gi|291601188|gb|EFF31475.1| ribosome-binding factor A [Enterococcus faecium E1039]
Length = 115
Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats.
Identities = 28/111 (25%), Positives = 53/111 (47%), Gaps = 6/111 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD--VSP 68
R RVG+E+ + ++ + +D + ++I++V ++ DL+ AT+Y S+ D
Sbjct: 5 RDRRVGQEILKEVNDIL-RKKVRDPRVEN--VTITDVKVTGDLQQATIYYSILSDLASDK 61
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ LN IR +G +L + PEL F D S+ ++ L+
Sbjct: 62 KKAQDGLNKASGLIRRELGHNLSIYK-TPELFFELDESVVYGNHIDELLRD 111
>gi|163814222|ref|ZP_02205614.1| hypothetical protein COPEUT_00376 [Coprococcus eutactus ATCC 27759]
gi|158450671|gb|EDP27666.1| hypothetical protein COPEUT_00376 [Coprococcus eutactus ATCC 27759]
Length = 134
Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats.
Identities = 33/110 (30%), Positives = 55/110 (50%), Gaps = 4/110 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
KNS + R+ EV+ L +I E +D IS + S+ +V ++ DL+ YIS+ D
Sbjct: 3 KNSVKNNRINGEVQRELSRIISR-EIKDPRISP-MTSVVDVVVTPDLKFCKAYISVLGDQ 60
Query: 67 SP-DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNA 115
D + L + +IR + S+ NLR PE+ F D S++ ++
Sbjct: 61 DAVDSTFAGLTSAMGYIRRELAHSV-NLRNTPEITFIMDQSIEYGVNMSH 109
>gi|166712597|ref|ZP_02243804.1| ribosome-binding factor A [Xanthomonas oryzae pv. oryzicola BLS256]
Length = 130
Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats.
Identities = 30/113 (26%), Positives = 56/113 (49%), Gaps = 4/113 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
K+ R RV +VR L ++ +D + +S+S+V +S DL A V+++
Sbjct: 4 KSFHRTDRVSAQVRRDLGTIVH-AAVRDHGLPS--VSVSDVEISRDLAHAKVFVTALQQE 60
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ L +R ++ R+++ LR+VPEL F YD S+ +++ L+
Sbjct: 61 RSAEAVKGLKDIAGQLRTQLARAMK-LRHVPELHFHYDDSVDRGERIDNLLRD 112
>gi|325921394|ref|ZP_08183251.1| ribosome-binding factor A [Xanthomonas gardneri ATCC 19865]
gi|325548152|gb|EGD19149.1| ribosome-binding factor A [Xanthomonas gardneri ATCC 19865]
Length = 130
Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats.
Identities = 29/113 (25%), Positives = 56/113 (49%), Gaps = 4/113 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
K+ R RV +VR L ++ +D + +S+S+V ++ DL A V+++
Sbjct: 4 KSFHRTDRVSAQVRRDLGTIVH-AAVRDHGLPS--VSVSDVEVTRDLAHAKVFVTALQQE 60
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ L +R ++ R+++ LR+VPEL F YD S+ +++ L+
Sbjct: 61 RSVEAVKGLKEIAGQLRTQLARAMK-LRHVPELHFHYDDSVDRGERIDNLLRD 112
>gi|219850519|ref|YP_002464952.1| ribosome-binding factor A [Chloroflexus aggregans DSM 9485]
gi|254789740|sp|B8GAE1|RBFA_CHLAD RecName: Full=Ribosome-binding factor A
gi|219544778|gb|ACL26516.1| ribosome-binding factor A [Chloroflexus aggregans DSM 9485]
Length = 127
Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats.
Identities = 31/111 (27%), Positives = 57/111 (51%), Gaps = 4/111 (3%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD-VSP 68
+R +V + ++ L VI E +D + S+++V +S DL+ A VYIS+
Sbjct: 4 QRLQQVADTMQRILGEVI-QTELKDPRVG--FASVTKVEVSADLQHAKVYISIMGTPEER 60
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
++AL F+R R+ +R++R++PEL DTS+ +N ++
Sbjct: 61 ATTMAALQRARGFLRKRVAEEMRHMRFIPELHLIEDTSIDYSLHINDVIRQ 111
>gi|238924303|ref|YP_002937819.1| ribosome-binding factor A [Eubacterium rectale ATCC 33656]
gi|259551987|sp|C4ZBF3|RBFA_EUBR3 RecName: Full=Ribosome-binding factor A
gi|238875978|gb|ACR75685.1| ribosome-binding factor A [Eubacterium rectale ATCC 33656]
gi|291525074|emb|CBK90661.1| ribosome-binding factor A [Eubacterium rectale DSM 17629]
gi|291529169|emb|CBK94755.1| ribosome-binding factor A [Eubacterium rectale M104/1]
Length = 121
Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats.
Identities = 32/123 (26%), Positives = 62/123 (50%), Gaps = 6/123 (4%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
KNS + +R+ EEV L +I E +D I+ + S+ V ++ DL+ A YIS+ D
Sbjct: 3 KNSIKNIRINEEVMRELSNII-RGEIKDPRINP-MTSVVAVEVAPDLKTAKAYISVLGDK 60
Query: 67 SPD-RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
++ L +IR + +++ NLR P + F D S++ +++ + ++
Sbjct: 61 KSQADTLAGLKSAEGYIRRTLAKNI-NLRNTPAITFIIDQSIEYGVEMSK--KIDEVTKN 117
Query: 126 LEK 128
L++
Sbjct: 118 LKE 120
>gi|224537525|ref|ZP_03678064.1| hypothetical protein BACCELL_02404 [Bacteroides cellulosilyticus
DSM 14838]
gi|224520838|gb|EEF89943.1| hypothetical protein BACCELL_02404 [Bacteroides cellulosilyticus
DSM 14838]
Length = 110
Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats.
Identities = 34/112 (30%), Positives = 59/112 (52%), Gaps = 4/112 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
+ R ++ ++ L + L Q + + +IS+S V +S DL VA Y+S+
Sbjct: 1 METTRQNKIARLLQKELSDIFL---LQTKSMPGVLISVSAVRISPDLSVARAYLSIFPSE 57
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRN-LRYVPELRFRYDTSLQSYWKLNALM 117
+ +I +N N+K IR +G +R+ LR +PEL+F D SL K++ L+
Sbjct: 58 KAEEIIKNVNDNMKSIRYELGTRVRHQLRIIPELKFFVDDSLDYLEKIDELL 109
>gi|227499042|ref|ZP_03929179.1| ribosome-binding factor A [Acidaminococcus sp. D21]
gi|226904491|gb|EEH90409.1| ribosome-binding factor A [Acidaminococcus sp. D21]
Length = 119
Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats.
Identities = 25/119 (21%), Positives = 54/119 (45%), Gaps = 5/119 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS-PD 69
RA ++ ++ L ++L E +D + ++I+ V ++ +L A +Y+SL +
Sbjct: 5 RAEKLQALIKQELSNMLLR-EVKDPRVK--FVTITGVEVTNELSYAKIYVSLYGSEKQQE 61
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALEK 128
L + + R I + ++ LR P L F DTS++ + +++ K +
Sbjct: 62 EAWKGLQSCLGYFRTEIAKRIK-LRMAPHLSFHKDTSMEYSAHIESILKEIKEKEDHHE 119
>gi|71064651|ref|YP_263378.1| ribosome-binding factor A [Psychrobacter arcticus 273-4]
gi|123649860|sp|Q4FVL4|RBFA_PSYA2 RecName: Full=Ribosome-binding factor A
gi|71037636|gb|AAZ17944.1| ribosome-binding factor A [Psychrobacter arcticus 273-4]
Length = 134
Score = 111 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 30/128 (23%), Positives = 55/128 (42%), Gaps = 11/128 (8%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV-- 66
++R R+ ++++ L V++ + D + ++IS V +S DL A VY+++
Sbjct: 2 NQRLQRLADQIQRELA-VLIRDAVNDPRL-TGFVTISSVKVSPDLGYADVYVTIMEPELN 59
Query: 67 ------SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
+ + I LN F+R + SL+ R P LRF YD + L+
Sbjct: 60 DAMTMSNHEESIKVLNKAAGFLRTELSHSLKT-RTTPRLRFHYDEVTARGNYMMDLISKA 118
Query: 121 KIPVALEK 128
I +
Sbjct: 119 VIKTEENE 126
>gi|69246866|ref|ZP_00604158.1| Ribosome-binding factor A [Enterococcus faecium DO]
gi|257882940|ref|ZP_05662593.1| ribosome-binding factor A [Enterococcus faecium 1,231,502]
gi|257889281|ref|ZP_05668934.1| ribosome-binding factor A [Enterococcus faecium 1,231,410]
gi|258615954|ref|ZP_05713724.1| ribosome-binding factor A [Enterococcus faecium DO]
gi|260560107|ref|ZP_05832285.1| ribosome-binding factor A [Enterococcus faecium C68]
gi|293560196|ref|ZP_06676698.1| ribosome-binding factor A [Enterococcus faecium E1162]
gi|294620767|ref|ZP_06699974.1| ribosome-binding factor A [Enterococcus faecium U0317]
gi|314937509|ref|ZP_07844842.1| ribosome-binding factor A [Enterococcus faecium TX0133a04]
gi|314942168|ref|ZP_07849022.1| ribosome-binding factor A [Enterococcus faecium TX0133C]
gi|314947492|ref|ZP_07850907.1| ribosome-binding factor A [Enterococcus faecium TX0082]
gi|314951479|ref|ZP_07854528.1| ribosome-binding factor A [Enterococcus faecium TX0133A]
gi|314992569|ref|ZP_07857987.1| ribosome-binding factor A [Enterococcus faecium TX0133B]
gi|314995496|ref|ZP_07860596.1| ribosome-binding factor A [Enterococcus faecium TX0133a01]
gi|68195047|gb|EAN09510.1| Ribosome-binding factor A [Enterococcus faecium DO]
gi|257818598|gb|EEV45926.1| ribosome-binding factor A [Enterococcus faecium 1,231,502]
gi|257825641|gb|EEV52267.1| ribosome-binding factor A [Enterococcus faecium 1,231,410]
gi|260073942|gb|EEW62266.1| ribosome-binding factor A [Enterococcus faecium C68]
gi|291599747|gb|EFF30757.1| ribosome-binding factor A [Enterococcus faecium U0317]
gi|291605868|gb|EFF35300.1| ribosome-binding factor A [Enterococcus faecium E1162]
gi|313590330|gb|EFR69175.1| ribosome-binding factor A [Enterococcus faecium TX0133a01]
gi|313592861|gb|EFR71706.1| ribosome-binding factor A [Enterococcus faecium TX0133B]
gi|313596319|gb|EFR75164.1| ribosome-binding factor A [Enterococcus faecium TX0133A]
gi|313599091|gb|EFR77936.1| ribosome-binding factor A [Enterococcus faecium TX0133C]
gi|313643150|gb|EFS07730.1| ribosome-binding factor A [Enterococcus faecium TX0133a04]
gi|313646042|gb|EFS10622.1| ribosome-binding factor A [Enterococcus faecium TX0082]
Length = 115
Score = 111 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 28/111 (25%), Positives = 52/111 (46%), Gaps = 6/111 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD--VSP 68
R RVG+E+ + ++ + +D + ++I++V ++ DL+ AT+Y S+ D
Sbjct: 5 RDRRVGQEILKEVNDIL-RKKVRDPRVEN--VTITDVKVTGDLQQATIYYSILSDLASDK 61
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
LN IR +G +L + PEL F D S+ ++ L+
Sbjct: 62 KTAQDGLNKASGLIRRELGHNLSIYK-TPELFFELDESVVYGNHIDELLRD 111
>gi|300312897|ref|YP_003776989.1| ribosome-binding factor A protein [Herbaspirillum seropedicae SmR1]
gi|300075682|gb|ADJ65081.1| ribosome-binding factor A protein [Herbaspirillum seropedicae SmR1]
Length = 130
Score = 111 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 59/119 (49%), Gaps = 6/119 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD--VSP 68
R LRV ++++ L +I E +D + +I+I+EV ++ D A V+ + +D +
Sbjct: 11 RGLRVADQIQRDLSELIAF-ELKDPRVG--MITITEVQVTPDYAHAKVFFTTLVDNPEAI 67
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALE 127
++ L ++R ++GR L + +PEL F +D S +++ L+ A +
Sbjct: 68 KNTLAGLRKAGGYLRTQLGRRL-TIHTLPELHFVHDNSTARGIEMSRLIDEANATRAKD 125
>gi|157964520|ref|YP_001499344.1| ribosome-binding factor A [Rickettsia massiliae MTU5]
gi|157844296|gb|ABV84797.1| Ribosome-binding factor A [Rickettsia massiliae MTU5]
Length = 117
Score = 111 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 58/118 (49%), Gaps = 2/118 (1%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
MK NS R ++ + AL+ ++ + D + ++I++V ++ DL++A Y
Sbjct: 1 MKKLTKTNSHRQQKLASIINEALIEILRRGKMLDSRLFDCPLTITKVIVTADLKIANCYF 60
Query: 61 SLPLDV-SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ D ++ ALN + IR I + N+++ P++RF YD + K+ L+
Sbjct: 61 LPFNTKLTIDEIMDALNNSKNAIRNFITNKI-NMKFSPDIRFHYDYGFDNAIKVAHLL 117
>gi|78043533|ref|YP_360585.1| ribosome-binding factor A [Carboxydothermus hydrogenoformans
Z-2901]
gi|123575934|sp|Q3AB99|RBFA_CARHZ RecName: Full=Ribosome-binding factor A
gi|77995648|gb|ABB14547.1| ribosome-binding factor A [Carboxydothermus hydrogenoformans
Z-2901]
Length = 125
Score = 111 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 30/114 (26%), Positives = 57/114 (50%), Gaps = 5/114 (4%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDVS 67
S + R + ++ A+ +I E +D + +S+++V ++ DL A +YIS+ +
Sbjct: 6 SHKHERTAQAIKEAVAAIISR-EVKDPRLG--FVSVTKVDLARDLSQAKIYISVYGSEED 62
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
ALN FI+G + +R LR +PEL F D S++ ++ ++ K
Sbjct: 63 KKNSFIALNSAKGFIKGELASRVR-LRIMPELYFVEDPSIEYGARIMEILEGLK 115
>gi|258545581|ref|ZP_05705815.1| ribosome-binding factor A [Cardiobacterium hominis ATCC 15826]
gi|258519281|gb|EEV88140.1| ribosome-binding factor A [Cardiobacterium hominis ATCC 15826]
Length = 128
Score = 111 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 31/116 (26%), Positives = 61/116 (52%), Gaps = 6/116 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
PK R R+GE++R L + ++SI+ V ++ DL A VY++ ++
Sbjct: 2 PKGQDRTRRIGEQMRRDLAVAVPQILDHP---HASLLSITAVRVTRDLSFAKVYVTHVIN 58
Query: 66 VSPDR--VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ +R ++ ALN + +R + + L ++R +PEL F YD S++ +++ L+
Sbjct: 59 DADERQTLLRALNAHAGQLRHALAQKL-SIRKMPELHFVYDDSVEYGARMDHLLHD 113
>gi|293398933|ref|ZP_06643098.1| ribosome-binding factor A [Neisseria gonorrhoeae F62]
gi|291610347|gb|EFF39457.1| ribosome-binding factor A [Neisseria gonorrhoeae F62]
Length = 123
Score = 111 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 54/117 (46%), Gaps = 4/117 (3%)
Query: 3 NKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL 62
K + R RV E++ L ++ +D + I+I+EV ++ D ATV+ ++
Sbjct: 2 RKPQRGYARQDRVKEQIMRELAE-LVRTGLKDPRVG--FITINEVEITRDYSHATVFYTV 58
Query: 63 PLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ L +R + + ++ + +PEL F+YD SL+ L+AL+
Sbjct: 59 LNQDTRKITEEVLEHARGHLRSELSKRIKLFK-IPELHFKYDESLERGMSLSALIDQ 114
>gi|161870244|ref|YP_001599414.1| ribosome-binding factor A [Neisseria meningitidis 053442]
gi|304387301|ref|ZP_07369494.1| ribosome-binding factor A [Neisseria meningitidis ATCC 13091]
gi|189039549|sp|A9M021|RBFA_NEIM0 RecName: Full=Ribosome-binding factor A
gi|161595797|gb|ABX73457.1| ribosomal-binding factor A [Neisseria meningitidis 053442]
gi|254672176|emb|CBA05023.1| Ribosome-binding factor A [Neisseria meningitidis alpha275]
gi|304338684|gb|EFM04801.1| ribosome-binding factor A [Neisseria meningitidis ATCC 13091]
gi|325128437|gb|EGC51318.1| ribosome-binding factor A [Neisseria meningitidis N1568]
Length = 123
Score = 111 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 54/117 (46%), Gaps = 4/117 (3%)
Query: 3 NKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL 62
K + R RV E++ L ++ +D I+++EV ++ D ATV+ ++
Sbjct: 2 RKPQRGYARQDRVKEQIMRELAE-LVRTGLKDPR--AGFITVNEVEVTRDYSHATVFYTI 58
Query: 63 PLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ + L +R + + ++ + +PEL F+YD SL+ L+AL+
Sbjct: 59 LNQDAREITEEVLEHARGHLRSELAKRIKLFK-IPELHFKYDESLERGLNLSALIDQ 114
>gi|292669513|ref|ZP_06602939.1| ribosome-binding factor A [Selenomonas noxia ATCC 43541]
gi|292648876|gb|EFF66848.1| ribosome-binding factor A [Selenomonas noxia ATCC 43541]
Length = 133
Score = 111 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 31/112 (27%), Positives = 58/112 (51%), Gaps = 5/112 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPD- 69
R ++ E ++ + +I +E +D I ++++ V + DLR A +Y+S+ D
Sbjct: 14 RVEKLQELMKQEISDIIF-HELKDPRIG--FVTVTSVACTEDLREAKIYVSVMGDEKKAR 70
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
++ LN ++ F+R IG+ +R LR+ PE+ F DTSL + L+
Sbjct: 71 DTLNGLNSSLGFVRREIGKRIR-LRFTPEISFALDTSLSYSDHIQRLLNEIH 121
>gi|218768390|ref|YP_002342902.1| ribosome-binding factor A [Neisseria meningitidis Z2491]
gi|20978659|sp|Q9JTX7|RBFA_NEIMA RecName: Full=Ribosome-binding factor A
gi|121052398|emb|CAM08730.1| ribosomal-binding factor A [Neisseria meningitidis Z2491]
gi|319410636|emb|CBY91005.1| ribosome-binding factor A [Neisseria meningitidis WUE 2594]
gi|325130450|gb|EGC53211.1| ribosome-binding factor A [Neisseria meningitidis OX99.30304]
gi|325204366|gb|ADY99819.1| ribosome-binding factor A [Neisseria meningitidis M01-240355]
Length = 123
Score = 111 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 54/117 (46%), Gaps = 4/117 (3%)
Query: 3 NKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL 62
K + R RV E++ L ++ +D I+++EV ++ D ATV+ ++
Sbjct: 2 RKPQRGYARQDRVKEQIMRELAE-LVRTGLKDPR--AGFITVNEVEVTRDYSHATVFYTV 58
Query: 63 PLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ + L +R + + ++ + +PEL F+YD SL+ L+AL+
Sbjct: 59 LNQDAREITEEVLEHARGHLRSELAKRIKLFK-IPELHFKYDESLERGLNLSALIDQ 114
>gi|312129254|ref|YP_003996594.1| ribosome-binding factor a [Leadbetterella byssophila DSM 17132]
gi|311905800|gb|ADQ16241.1| ribosome-binding factor A [Leadbetterella byssophila DSM 17132]
Length = 124
Score = 111 bits (280), Expect = 3e-23, Method: Composition-based stats.
Identities = 33/123 (26%), Positives = 61/123 (49%), Gaps = 3/123 (2%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
S+R +V ++ L + EF+ L + + ++I++V +S DL VA VY+S +
Sbjct: 1 MESKRQKQVARLIQKDLGEIFQR-EFR-SLFAGNFVTITDVKVSPDLSVAKVYLSFLKNH 58
Query: 67 SPDRVISALNCNIKFIRGRIG-RSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
+ + ++ + K IRG G ++ + LR +P F D + + K+ L IP A
Sbjct: 59 NRESLLEEIKEQTKKIRGMFGMKAGKQLRIIPHFSFFIDDTAEYAQKIEELFANIHIPPA 118
Query: 126 LEK 128
E+
Sbjct: 119 EEE 121
>gi|239999118|ref|ZP_04719042.1| ribosome-binding factor A [Neisseria gonorrhoeae 35/02]
gi|240113096|ref|ZP_04727586.1| ribosome-binding factor A [Neisseria gonorrhoeae MS11]
gi|254493895|ref|ZP_05107066.1| ribosome-binding factor A [Neisseria gonorrhoeae 1291]
gi|268594954|ref|ZP_06129121.1| ribosome-binding factor A [Neisseria gonorrhoeae 35/02]
gi|268599182|ref|ZP_06133349.1| ribosome-binding factor A [Neisseria gonorrhoeae MS11]
gi|226512935|gb|EEH62280.1| ribosome-binding factor A [Neisseria gonorrhoeae 1291]
gi|268548343|gb|EEZ43761.1| ribosome-binding factor A [Neisseria gonorrhoeae 35/02]
gi|268583313|gb|EEZ47989.1| ribosome-binding factor A [Neisseria gonorrhoeae MS11]
gi|317164410|gb|ADV07951.1| ribosome-binding factor A [Neisseria gonorrhoeae TCDC-NG08107]
Length = 123
Score = 111 bits (280), Expect = 3e-23, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 54/117 (46%), Gaps = 4/117 (3%)
Query: 3 NKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL 62
K + R RV E++ L ++ +D I+I+EV ++ D ATV+ ++
Sbjct: 2 RKPQRGYARQDRVKEQIMRELAE-LVRTGLKDPR--AGFITINEVEITRDYSHATVFYTV 58
Query: 63 PLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ + L +R + + ++ + +PEL F+YD SL+ L+AL+
Sbjct: 59 LNQDTREITEEVLEHARGHLRSELSKRIKLFK-IPELHFKYDESLERGMSLSALIDQ 114
>gi|15892529|ref|NP_360243.1| ribosome-binding factor A [Rickettsia conorii str. Malish 7]
gi|20139548|sp|Q92I14|RBFA_RICCN RecName: Full=Ribosome-binding factor A
gi|15619690|gb|AAL03144.1| ribosome-binding factor A [Rickettsia conorii str. Malish 7]
Length = 120
Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 58/120 (48%), Gaps = 2/120 (1%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
MK +S R ++ + AL+ ++ + D + ++I++V ++ DL++A Y
Sbjct: 1 MKKLTKTHSHRQQKLASIINEALIEILRRGKMLDSRLFDCPLTITKVIVTADLKIANCYF 60
Query: 61 SLPLDV-SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ D ++ ALN + IR I + N+++ P++RF YD + K+ L+
Sbjct: 61 LPFNTKLTIDEIMDALNNSKNAIRNFITNKI-NMKFSPDIRFHYDHGFDNAIKVAHLLKD 119
>gi|15604300|ref|NP_220816.1| ribosome-binding factor A [Rickettsia prowazekii str. Madrid E]
gi|3914549|sp|O05964|RBFA_RICPR RecName: Full=Ribosome-binding factor A
gi|2073498|emb|CAA72443.1| ribosomal binding factor A [Rickettsia prowazekii]
gi|3860992|emb|CAA14892.1| RIBOSOME-BINDING FACTOR A (rbfA) [Rickettsia prowazekii]
gi|292572049|gb|ADE29964.1| Ribosome-binding factor A [Rickettsia prowazekii Rp22]
Length = 128
Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 58/120 (48%), Gaps = 2/120 (1%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
MK NS R ++ + L+ ++ + D+ + ++I+++ ++ DL++A Y
Sbjct: 1 MKKLTKTNSHRQQKLASIINEVLIEILKRGKMLDKRLFDCPLTITKIIVTADLKIANCYF 60
Query: 61 SLPLDV-SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ D ++ ALN + IR I + N+++ PE+RF YD + K+ L+
Sbjct: 61 FPFNTKLTFDEIMDALNNSKHAIRNFITNRI-NMKFSPEIRFYYDYGFDNAIKIEELLKN 119
>gi|329577089|gb|EGG58562.1| ribosome-binding factor A [Enterococcus faecalis TX1467]
Length = 116
Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats.
Identities = 31/109 (28%), Positives = 53/109 (48%), Gaps = 6/109 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD--VSP 68
R RVG+E+ + ++ +D + I+I++V ++ DL+ AT+Y SL D
Sbjct: 5 RDRRVGQEIMREVNDILNKR-IRDPRVQG--ITITDVRVTGDLQQATIYYSLLSDLASEQ 61
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ L+ IR +G+ L L PEL F D S+Q ++ L+
Sbjct: 62 QKAQQGLDKAKGLIRKELGQRL-TLYKTPELIFERDESVQYGNHIDELI 109
>gi|299144049|ref|ZP_07037129.1| ribosome-binding factor A [Peptoniphilus sp. oral taxon 386 str.
F0131]
gi|298518534|gb|EFI42273.1| ribosome-binding factor A [Peptoniphilus sp. oral taxon 386 str.
F0131]
Length = 117
Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats.
Identities = 35/112 (31%), Positives = 65/112 (58%), Gaps = 4/112 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
N++R ++ EEVR A+ I+ ++ +D I +ISIS V ++ DL A VYIS+ D
Sbjct: 1 MNNKRTHQISEEVRRAISD-IVQHKLKDPRIPD-IISISHVDVTNDLSFAKVYISILDDD 58
Query: 67 SP-DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ + I+ +N FI+ + + ++ +R +PEL F D S++ K++ ++
Sbjct: 59 NKIEEAINGINSAKGFIKRELAKLVK-IRAIPELIFVKDDSIEIGMKMSKII 109
>gi|261416682|ref|YP_003250365.1| ribosome-binding factor A [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|261373138|gb|ACX75883.1| ribosome-binding factor A [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|302325362|gb|ADL24563.1| ribosome-binding factor A [Fibrobacter succinogenes subsp.
succinogenes S85]
Length = 117
Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats.
Identities = 34/119 (28%), Positives = 60/119 (50%), Gaps = 4/119 (3%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVS 67
+RR R+GE+ R + +I +D +S + SI+ V ++ DL A +S + D
Sbjct: 2 TRRTDRLGEQFREEISKLIQKG-LKDPRVST-LASITRVDITEDLSYAKALVSVMGSDKE 59
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVAL 126
+ LN + FIRG +G++L+ + VPEL+F D +L+ + ++ K L
Sbjct: 60 KRDTLVGLNNSAGFIRGVLGKALKIFK-VPELKFVLDENLEHAMHIEEILAELKQKGEL 117
>gi|237746611|ref|ZP_04577091.1| ribosome-binding factor A [Oxalobacter formigenes HOxBLS]
gi|229377962|gb|EEO28053.1| ribosome-binding factor A [Oxalobacter formigenes HOxBLS]
Length = 129
Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats.
Identities = 30/109 (27%), Positives = 61/109 (55%), Gaps = 6/109 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD--VSP 68
R+LRV ++++ L +I +E +D + +++I+EV ++ D A VY ++ D +
Sbjct: 11 RSLRVADQIQRDLSDIIF-SELKDPNVG--MVTITEVKVTPDYANARVYFTMLDDKPETV 67
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ + +L FIR ++G+ L ++ +P+L F YD S+ L+ L+
Sbjct: 68 KKTLDSLQHASGFIRMQLGKRL-HIHTLPQLAFIYDNSIAEGVALSHLI 115
>gi|227872006|ref|ZP_03990391.1| ribosome-binding factor A [Oribacterium sinus F0268]
gi|227842149|gb|EEJ52394.1| ribosome-binding factor A [Oribacterium sinus F0268]
Length = 138
Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 8/120 (6%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
MK + KN RR E+VR L +++ E +D +S ++ V ++ DL+ V++
Sbjct: 1 MKKLSFKNQRR----NEDVRRCLS-LLIREEVKDSRVSP-FCDVTGVDLTPDLQYCKVFV 54
Query: 61 SLPLDVSP-DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
S + I L F+R + SL NLR+ PEL+F D S++ +++AL+
Sbjct: 55 SCLGSEEELGKTIEGLKAAGGFLRRELAGSL-NLRHTPELQFIADHSVEYGSRMDALISQ 113
>gi|288800321|ref|ZP_06405779.1| ribosome-binding factor A [Prevotella sp. oral taxon 299 str.
F0039]
gi|288332534|gb|EFC71014.1| ribosome-binding factor A [Prevotella sp. oral taxon 299 str.
F0039]
Length = 111
Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats.
Identities = 31/109 (28%), Positives = 54/109 (49%), Gaps = 4/109 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
R +V + L + N Q R + ++S++ +S DL V T Y+S+ D
Sbjct: 5 RQNKVARLFQKELSLIFQN---QTRAMMGMMVSVTRCKVSPDLGVCTAYLSVFPSEKGDE 61
Query: 71 VISALNCNIKFIRGRIGRSL-RNLRYVPELRFRYDTSLQSYWKLNALMC 118
++ + N K IR +G+ + + +R VPELRF D SL +++ L+
Sbjct: 62 ILENIRANYKSIRFELGKKIGKQVRIVPELRFFIDDSLDYLERIDELLA 110
>gi|221067735|ref|ZP_03543840.1| ribosome-binding factor A [Comamonas testosteroni KF-1]
gi|264677932|ref|YP_003277839.1| ribosome-binding factor A [Comamonas testosteroni CNB-2]
gi|299530197|ref|ZP_07043623.1| ribosome-binding factor A [Comamonas testosteroni S44]
gi|220712758|gb|EED68126.1| ribosome-binding factor A [Comamonas testosteroni KF-1]
gi|262208445|gb|ACY32543.1| ribosome-binding factor A [Comamonas testosteroni CNB-2]
gi|298721854|gb|EFI62785.1| ribosome-binding factor A [Comamonas testosteroni S44]
Length = 125
Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats.
Identities = 30/127 (23%), Positives = 63/127 (49%), Gaps = 6/127 (4%)
Query: 2 KNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS 61
K K+ + R+ +V ++++ L +I E +D + ++++ V ++ D A V+ S
Sbjct: 4 KRKSAAPN-RSFKVSDQIQRDLSELIAR-ELKDPRVG--MVTLQGVEVTPDYAHAKVFFS 59
Query: 62 LPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+ + P+ ++ALN F+R + + L ++ VP L F YD + + +NAL+
Sbjct: 60 VLVG-DPEVTLAALNQAAGFLRNGLFKRL-HIHTVPTLHFVYDRTTERAADMNALIAKAV 117
Query: 122 IPVALEK 128
E+
Sbjct: 118 ASRGPEQ 124
>gi|304320571|ref|YP_003854214.1| ribosome-binding factor A [Parvularcula bermudensis HTCC2503]
gi|303299473|gb|ADM09072.1| ribosome-binding factor A [Parvularcula bermudensis HTCC2503]
Length = 106
Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats.
Identities = 29/104 (27%), Positives = 51/104 (49%), Gaps = 1/104 (0%)
Query: 18 EVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNC 77
+R AL + E + ++I+EV +S DL+ ATV+ S D ++ LN
Sbjct: 1 MIRHALAEMFQREEIHEEAFPTTPVTITEVRVSPDLKSATVFCSALGKDVFDEEVAQLNA 60
Query: 78 NIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
IR +GR + ++Y P L+F D + + ++NAL+ +
Sbjct: 61 ISGAIRQVLGRKI-TMKYTPSLKFLPDETFEEAARINALLKETR 103
>gi|29348248|ref|NP_811751.1| ribosome-binding factor A [Bacteroides thetaiotaomicron VPI-5482]
gi|253569386|ref|ZP_04846796.1| ribosome-binding factor A [Bacteroides sp. 1_1_6]
gi|298386059|ref|ZP_06995616.1| ribosome-binding factor A [Bacteroides sp. 1_1_14]
gi|29340151|gb|AAO77945.1| ribosome-binding factor A [Bacteroides thetaiotaomicron VPI-5482]
gi|251841405|gb|EES69486.1| ribosome-binding factor A [Bacteroides sp. 1_1_6]
gi|298261287|gb|EFI04154.1| ribosome-binding factor A [Bacteroides sp. 1_1_14]
Length = 110
Score = 111 bits (279), Expect = 4e-23, Method: Composition-based stats.
Identities = 32/112 (28%), Positives = 61/112 (54%), Gaps = 4/112 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
+ R ++ ++ L + L Q + + +IS+S V +S D+ +A VY+S+
Sbjct: 1 METTRQNKISRLLQKELSEIFL---LQTKAMPGILISVSAVRISPDMSIARVYLSVFPSE 57
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRN-LRYVPELRFRYDTSLQSYWKLNALM 117
+ ++ +N N+K IR +G +R+ LR +PEL+F D SL K+++L+
Sbjct: 58 KAEEMVKNINENMKSIRFELGTRVRHQLRIIPELKFFVDDSLDYIEKIDSLL 109
>gi|160891600|ref|ZP_02072603.1| hypothetical protein BACUNI_04053 [Bacteroides uniformis ATCC 8492]
gi|156859007|gb|EDO52438.1| hypothetical protein BACUNI_04053 [Bacteroides uniformis ATCC 8492]
Length = 113
Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats.
Identities = 32/114 (28%), Positives = 60/114 (52%), Gaps = 4/114 (3%)
Query: 5 NPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL 64
N + R ++ ++ L + L Q + + +IS+S V +S D+ VA Y+S+
Sbjct: 2 NSMETTRQNKIARLLQKELSDIFL---LQTKSMPGILISVSAVRISPDMSVARAYLSIFP 58
Query: 65 DVSPDRVISALNCNIKFIRGRIGRSLRN-LRYVPELRFRYDTSLQSYWKLNALM 117
+ ++ +N N+K IR +G +R+ LR +PEL+F D SL +++ L+
Sbjct: 59 SEKSEEIVKNINGNMKSIRFELGTRVRHQLRIIPELKFFVDDSLDYLERIDELL 112
>gi|29375844|ref|NP_814998.1| ribosome-binding factor A [Enterococcus faecalis V583]
gi|227518535|ref|ZP_03948584.1| ribosome-binding factor A [Enterococcus faecalis TX0104]
gi|227553061|ref|ZP_03983110.1| ribosome-binding factor A [Enterococcus faecalis HH22]
gi|229546048|ref|ZP_04434773.1| ribosome-binding factor A [Enterococcus faecalis TX1322]
gi|255976053|ref|ZP_05426639.1| ribosome-binding factor A [Enterococcus faecalis T2]
gi|256618854|ref|ZP_05475700.1| ribosome-binding factor A [Enterococcus faecalis ATCC 4200]
gi|256762272|ref|ZP_05502852.1| ribosome-binding factor A [Enterococcus faecalis T3]
gi|256852917|ref|ZP_05558287.1| ribosome-binding factor A [Enterococcus faecalis T8]
gi|256958763|ref|ZP_05562934.1| ribosome-binding factor A [Enterococcus faecalis DS5]
gi|256962131|ref|ZP_05566302.1| ribosome-binding factor A [Enterococcus faecalis Merz96]
gi|256965330|ref|ZP_05569501.1| ribosome-binding factor A [Enterococcus faecalis HIP11704]
gi|257078792|ref|ZP_05573153.1| ribosome-binding factor A [Enterococcus faecalis JH1]
gi|257082764|ref|ZP_05577125.1| ribosome-binding factor A [Enterococcus faecalis E1Sol]
gi|257085465|ref|ZP_05579826.1| ribosome-binding factor A [Enterococcus faecalis Fly1]
gi|257086622|ref|ZP_05580983.1| ribosome-binding factor A [Enterococcus faecalis D6]
gi|257089679|ref|ZP_05584040.1| ribosome-binding factor A [Enterococcus faecalis CH188]
gi|257415893|ref|ZP_05592887.1| ribosome-binding factor A [Enterococcus faecalis AR01/DG]
gi|257419095|ref|ZP_05596089.1| ribosome-binding factor A [Enterococcus faecalis T11]
gi|293383156|ref|ZP_06629073.1| ribosome-binding factor A [Enterococcus faecalis R712]
gi|293387690|ref|ZP_06632235.1| ribosome-binding factor A [Enterococcus faecalis S613]
gi|294780125|ref|ZP_06745498.1| ribosome-binding factor A [Enterococcus faecalis PC1.1]
gi|300860107|ref|ZP_07106195.1| ribosome-binding factor A [Enterococcus faecalis TUSoD Ef11]
gi|307268544|ref|ZP_07549917.1| ribosome-binding factor A [Enterococcus faecalis TX4248]
gi|307273437|ref|ZP_07554682.1| ribosome-binding factor A [Enterococcus faecalis TX0855]
gi|307277600|ref|ZP_07558692.1| ribosome-binding factor A [Enterococcus faecalis TX2134]
gi|307279090|ref|ZP_07560148.1| ribosome-binding factor A [Enterococcus faecalis TX0860]
gi|307291256|ref|ZP_07571140.1| ribosome-binding factor A [Enterococcus faecalis TX0411]
gi|312899336|ref|ZP_07758669.1| ribosome-binding factor A [Enterococcus faecalis TX0470]
gi|312904025|ref|ZP_07763193.1| ribosome-binding factor A [Enterococcus faecalis TX0635]
gi|312907255|ref|ZP_07766246.1| ribosome-binding factor A [Enterococcus faecalis DAPTO 512]
gi|312909873|ref|ZP_07768721.1| ribosome-binding factor A [Enterococcus faecalis DAPTO 516]
gi|312952272|ref|ZP_07771147.1| ribosome-binding factor A [Enterococcus faecalis TX0102]
gi|34098453|sp|Q835U7|RBFA_ENTFA RecName: Full=Ribosome-binding factor A
gi|29343306|gb|AAO81068.1| ribosome-binding factor A [Enterococcus faecalis V583]
gi|227074017|gb|EEI11980.1| ribosome-binding factor A [Enterococcus faecalis TX0104]
gi|227177804|gb|EEI58776.1| ribosome-binding factor A [Enterococcus faecalis HH22]
gi|229308821|gb|EEN74808.1| ribosome-binding factor A [Enterococcus faecalis TX1322]
gi|255968925|gb|EET99547.1| ribosome-binding factor A [Enterococcus faecalis T2]
gi|256598381|gb|EEU17557.1| ribosome-binding factor A [Enterococcus faecalis ATCC 4200]
gi|256683523|gb|EEU23218.1| ribosome-binding factor A [Enterococcus faecalis T3]
gi|256711376|gb|EEU26414.1| ribosome-binding factor A [Enterococcus faecalis T8]
gi|256949259|gb|EEU65891.1| ribosome-binding factor A [Enterococcus faecalis DS5]
gi|256952627|gb|EEU69259.1| ribosome-binding factor A [Enterococcus faecalis Merz96]
gi|256955826|gb|EEU72458.1| ribosome-binding factor A [Enterococcus faecalis HIP11704]
gi|256986822|gb|EEU74124.1| ribosome-binding factor A [Enterococcus faecalis JH1]
gi|256990794|gb|EEU78096.1| ribosome-binding factor A [Enterococcus faecalis E1Sol]
gi|256993495|gb|EEU80797.1| ribosome-binding factor A [Enterococcus faecalis Fly1]
gi|256994652|gb|EEU81954.1| ribosome-binding factor A [Enterococcus faecalis D6]
gi|256998491|gb|EEU85011.1| ribosome-binding factor A [Enterococcus faecalis CH188]
gi|257157721|gb|EEU87681.1| ribosome-binding factor A [Enterococcus faecalis ARO1/DG]
gi|257160923|gb|EEU90883.1| ribosome-binding factor A [Enterococcus faecalis T11]
gi|291079495|gb|EFE16859.1| ribosome-binding factor A [Enterococcus faecalis R712]
gi|291082879|gb|EFE19842.1| ribosome-binding factor A [Enterococcus faecalis S613]
gi|294452800|gb|EFG21229.1| ribosome-binding factor A [Enterococcus faecalis PC1.1]
gi|295112814|emb|CBL31451.1| ribosome-binding factor A [Enterococcus sp. 7L76]
gi|300850925|gb|EFK78674.1| ribosome-binding factor A [Enterococcus faecalis TUSoD Ef11]
gi|306497487|gb|EFM67020.1| ribosome-binding factor A [Enterococcus faecalis TX0411]
gi|306504215|gb|EFM73427.1| ribosome-binding factor A [Enterococcus faecalis TX0860]
gi|306505865|gb|EFM75043.1| ribosome-binding factor A [Enterococcus faecalis TX2134]
gi|306509964|gb|EFM78989.1| ribosome-binding factor A [Enterococcus faecalis TX0855]
gi|306515140|gb|EFM83682.1| ribosome-binding factor A [Enterococcus faecalis TX4248]
gi|310626283|gb|EFQ09566.1| ribosome-binding factor A [Enterococcus faecalis DAPTO 512]
gi|310629656|gb|EFQ12939.1| ribosome-binding factor A [Enterococcus faecalis TX0102]
gi|310632501|gb|EFQ15784.1| ribosome-binding factor A [Enterococcus faecalis TX0635]
gi|311289831|gb|EFQ68387.1| ribosome-binding factor A [Enterococcus faecalis DAPTO 516]
gi|311293487|gb|EFQ72043.1| ribosome-binding factor A [Enterococcus faecalis TX0470]
gi|315027489|gb|EFT39421.1| ribosome-binding factor A [Enterococcus faecalis TX2137]
gi|315030932|gb|EFT42864.1| ribosome-binding factor A [Enterococcus faecalis TX4000]
gi|315034088|gb|EFT46020.1| ribosome-binding factor A [Enterococcus faecalis TX0017]
gi|315036756|gb|EFT48688.1| ribosome-binding factor A [Enterococcus faecalis TX0027]
gi|315145582|gb|EFT89598.1| ribosome-binding factor A [Enterococcus faecalis TX2141]
gi|315147755|gb|EFT91771.1| ribosome-binding factor A [Enterococcus faecalis TX4244]
gi|315151456|gb|EFT95472.1| ribosome-binding factor A [Enterococcus faecalis TX0012]
gi|315153235|gb|EFT97251.1| ribosome-binding factor A [Enterococcus faecalis TX0031]
gi|315160332|gb|EFU04349.1| ribosome-binding factor A [Enterococcus faecalis TX0645]
gi|315166755|gb|EFU10772.1| ribosome-binding factor A [Enterococcus faecalis TX1341]
gi|315169954|gb|EFU13971.1| ribosome-binding factor A [Enterococcus faecalis TX1342]
gi|315174362|gb|EFU18379.1| ribosome-binding factor A [Enterococcus faecalis TX1346]
gi|315575670|gb|EFU87861.1| ribosome-binding factor A [Enterococcus faecalis TX0309B]
gi|315578372|gb|EFU90563.1| ribosome-binding factor A [Enterococcus faecalis TX0630]
gi|315579886|gb|EFU92077.1| ribosome-binding factor A [Enterococcus faecalis TX0309A]
gi|323480506|gb|ADX79945.1| ribosome-binding factor A [Enterococcus faecalis 62]
gi|327534897|gb|AEA93731.1| ribosome-binding factor A [Enterococcus faecalis OG1RF]
Length = 116
Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats.
Identities = 31/110 (28%), Positives = 53/110 (48%), Gaps = 6/110 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD--VSP 68
R RVG+E+ + ++ +D + I+I++V ++ DL+ AT+Y SL D
Sbjct: 5 RDRRVGQEIMREVNDILNKR-IRDPRVQG--ITITDVRVTGDLQQATIYYSLLSDLASEQ 61
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ L+ IR +G+ L L PEL F D S+Q ++ L+
Sbjct: 62 QKAQQGLDKAKGLIRKELGQRL-TLYKTPELIFERDESVQYGNHIDELIR 110
>gi|332881242|ref|ZP_08448892.1| ribosome-binding factor A [Capnocytophaga sp. oral taxon 329 str.
F0087]
gi|332680618|gb|EGJ53565.1| ribosome-binding factor A [Capnocytophaga sp. oral taxon 329 str.
F0087]
Length = 111
Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 57/112 (50%), Gaps = 4/112 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
+ R ++ ++ L + + Q + + ++S+S +S DL + VY+S+
Sbjct: 1 METTRQNKISRLIQKELSEIFM---LQTKAMKGVLVSVSACRISPDLSICRVYLSIFPSQ 57
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRN-LRYVPELRFRYDTSLQSYWKLNALM 117
+ ++ +N N+K IR +G +R+ LR +PEL+F D SL ++ L+
Sbjct: 58 QSEEIVKNINGNMKAIRYELGTRVRHQLRIIPELKFFVDDSLDYIENIDKLL 109
>gi|71276361|ref|ZP_00652638.1| Ribosome-binding factor A [Xylella fastidiosa Dixon]
gi|71898656|ref|ZP_00680826.1| Ribosome-binding factor A [Xylella fastidiosa Ann-1]
gi|170729434|ref|YP_001774867.1| ribosome-binding factor A [Xylella fastidiosa M12]
gi|238687909|sp|B0U1Q9|RBFA_XYLFM RecName: Full=Ribosome-binding factor A
gi|71162823|gb|EAO12548.1| Ribosome-binding factor A [Xylella fastidiosa Dixon]
gi|71731603|gb|EAO33664.1| Ribosome-binding factor A [Xylella fastidiosa Ann-1]
gi|167964227|gb|ACA11237.1| ribosomal-binding factor A [Xylella fastidiosa M12]
Length = 125
Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 61/122 (50%), Gaps = 4/122 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
K+ +R R+ ++R L + +D + S+S+V ++ D+ A V++++
Sbjct: 4 KSFQRTERISVQIRRDLGA-FVQAAVRDHGLPSM--SVSDVEVTRDMAHAKVFVTVLQAE 60
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVAL 126
++ L + +R ++ +++R LR+VPEL F YD SL ++N L+ P
Sbjct: 61 RSFEAVAGLKALARELRMQLAQTMR-LRFVPELHFHYDDSLDRGERINTLLRDLIPPADA 119
Query: 127 EK 128
EK
Sbjct: 120 EK 121
>gi|258591352|emb|CBE67651.1| Ribosome-binding factor A [NC10 bacterium 'Dutch sediment']
Length = 119
Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats.
Identities = 38/117 (32%), Positives = 57/117 (48%), Gaps = 6/117 (5%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI-SLPLD 65
RRA RVG ++ + +IL + +D + +++ V +S DL+ A VYI S+ D
Sbjct: 1 MQGRRADRVGTLIQEEISRLILQS-VKDPRVRCA--TVTRVRVSDDLQHAKVYIASMGGD 57
Query: 66 VSP-DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+ L F+RG +GR L LRY+PEL F D SL+ L L +
Sbjct: 58 KERCQEALIGLKSAAGFLRGELGRRL-CLRYIPELLFSLDDSLEQELHLAELFRQIE 113
>gi|237748743|ref|ZP_04579223.1| ribosome-binding factor A [Oxalobacter formigenes OXCC13]
gi|229380105|gb|EEO30196.1| ribosome-binding factor A [Oxalobacter formigenes OXCC13]
Length = 129
Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats.
Identities = 27/109 (24%), Positives = 60/109 (55%), Gaps = 6/109 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD--VSP 68
R++RV ++++ L +I +E +D + +I+I++V ++ D A V+ ++ D
Sbjct: 11 RSVRVADQIQRDLSDIIF-SELKDPHVG--MITITDVKVTPDYAHAKVFFTMLDDSPDKV 67
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ +L+ F+R ++G+ L ++ +P+L F YD S+ L+ L+
Sbjct: 68 KTTLDSLHRASGFLRMQLGKRL-HIHTLPQLSFVYDNSIAQGMALSHLI 115
>gi|238916827|ref|YP_002930344.1| ribosome-binding factor A [Eubacterium eligens ATCC 27750]
gi|259551983|sp|C4Z5N8|RBFA_EUBE2 RecName: Full=Ribosome-binding factor A
gi|238872187|gb|ACR71897.1| ribosome-binding factor A [Eubacterium eligens ATCC 27750]
Length = 130
Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats.
Identities = 34/112 (30%), Positives = 58/112 (51%), Gaps = 4/112 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
KNS + R+ EV L +I +E +D I+ + S+ V ++ DL+ YIS+ D
Sbjct: 3 KNSVKNTRINGEVLKELSNII-RSEIKDPRINP-MTSVVAVEVAPDLKTCKAYISVLGDE 60
Query: 67 S-PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
I+ L +IR ++ R++ NLR PE+RF D S++ ++ L+
Sbjct: 61 KSQKDTITGLKSAEGYIRRQLARTV-NLRNTPEIRFILDQSIEYGINMSKLI 111
>gi|332686764|ref|YP_004456538.1| ribosome-binding factor A [Melissococcus plutonius ATCC 35311]
gi|332370773|dbj|BAK21729.1| ribosome-binding factor A [Melissococcus plutonius ATCC 35311]
Length = 116
Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats.
Identities = 32/110 (29%), Positives = 54/110 (49%), Gaps = 6/110 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD--VSP 68
R RVG+E+ + ++ + +D + I+I++V ++ DL+ AT+Y SL D
Sbjct: 5 RDRRVGQEILHEINDIL-RKKIRDPRLQE--ITITDVRVTGDLQQATIYYSLLSDLASDQ 61
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+V L IR +G+ L L PEL F D S+Q ++ L+
Sbjct: 62 QKVQQGLEKAKGLIRRELGQRL-TLYKTPELFFEKDESVQYGNHVDKLLR 110
>gi|329956560|ref|ZP_08297157.1| ribosome-binding factor A [Bacteroides clarus YIT 12056]
gi|328524457|gb|EGF51527.1| ribosome-binding factor A [Bacteroides clarus YIT 12056]
Length = 112
Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats.
Identities = 32/112 (28%), Positives = 59/112 (52%), Gaps = 4/112 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
+ R ++ ++ L + L Q + + +IS+S V +S D+ VA Y+S+
Sbjct: 1 METTRQNKIARLLQKELSDIFL---LQTKSMPGILISVSAVRISPDMSVARAYLSVFPSE 57
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRN-LRYVPELRFRYDTSLQSYWKLNALM 117
+ +I +N N+K IR +G +R+ LR +PEL+F D SL +++ L+
Sbjct: 58 KSEEIIKNVNANMKSIRFELGTRVRHQLRIIPELKFFVDDSLDYLERIDELL 109
>gi|291550233|emb|CBL26495.1| ribosome-binding factor A [Ruminococcus torques L2-14]
Length = 124
Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 57/121 (47%), Gaps = 6/121 (4%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
KNS + RV EV+ L ++ +D ++ + S+ V ++ DL+ YIS+ D
Sbjct: 3 KNSIKNTRVNAEVQRELSNIL-RGGIKDPRVAP-LTSVVAVEVAPDLKTCKAYISVLGDK 60
Query: 67 S-PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
+ I L +IR + R++ N+R P++ F D S++ ++ + ++
Sbjct: 61 KAQEDTIKGLQSAEGYIRRELARTV-NMRNTPQITFIVDQSIEYGVNISK--KIDEVTRD 117
Query: 126 L 126
L
Sbjct: 118 L 118
>gi|291514732|emb|CBK63942.1| ribosome-binding factor A [Alistipes shahii WAL 8301]
Length = 113
Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats.
Identities = 24/112 (21%), Positives = 53/112 (47%), Gaps = 3/112 (2%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
+ R ++ ++++ + + ++ +++++ V +S D A +Y+S+
Sbjct: 1 METTRQQKIAKQIQKDVAEIFQKEGA--PIVRGSLVTVTAVRISPDFSYAKIYVSIFPFE 58
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRN-LRYVPELRFRYDTSLQSYWKLNALM 117
V+ L FIR +G+ LRN L+ VPE++F D SL+ + +
Sbjct: 59 QSGEVMKRLEHQNWFIRRALGQRLRNQLKNVPEIQFLLDDSLEYIEHIEQAL 110
>gi|67459061|ref|YP_246685.1| ribosome-binding factor A [Rickettsia felis URRWXCal2]
gi|75536505|sp|Q4ULQ3|RBFA_RICFE RecName: Full=Ribosome-binding factor A
gi|67004594|gb|AAY61520.1| Ribosome-binding factor A [Rickettsia felis URRWXCal2]
Length = 120
Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 58/120 (48%), Gaps = 2/120 (1%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
MK NS R ++ + AL+ ++ + D + ++I++V ++ DL++A Y
Sbjct: 1 MKKLTKTNSHRQQKLASIINEALIEILRRGKMLDSRLFDCPLTITKVIVTADLKIANCYF 60
Query: 61 SLPLDV-SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ D ++ AL+ + IR I + N+++ P++RF YD + K+ L+
Sbjct: 61 LPFNTKLTIDEIMDALSNSKNAIRNFITNKI-NMKFSPDIRFHYDHGFDNAIKVEELLKN 119
>gi|150390434|ref|YP_001320483.1| ribosome-binding factor A [Alkaliphilus metalliredigens QYMF]
gi|172052480|sp|A6TRK6|RBFA_ALKMQ RecName: Full=Ribosome-binding factor A
gi|149950296|gb|ABR48824.1| ribosome-binding factor A [Alkaliphilus metalliredigens QYMF]
Length = 138
Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats.
Identities = 35/104 (33%), Positives = 58/104 (55%), Gaps = 4/104 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD-VSPD 69
R R+ EE++ + +I N+ +D I++ + SI EV ++ DLR AT+YIS+ D +
Sbjct: 8 RVNRLAEEIKKIISHMI-RNDLRDPRIAK-MTSIIEVNVTRDLRFATIYISVLGDQQEKE 65
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKL 113
I L + FIR +GR + R+ PEL F+ D S++ +
Sbjct: 66 ETIEGLKKSSGFIRKEVGRQITA-RFTPELIFKLDESIERGVYM 108
>gi|290969151|ref|ZP_06560676.1| ribosome-binding factor A [Megasphaera genomosp. type_1 str. 28L]
gi|290780657|gb|EFD93260.1| ribosome-binding factor A [Megasphaera genomosp. type_1 str. 28L]
Length = 115
Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 56/112 (50%), Gaps = 5/112 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD-VSPD 69
R ++ E ++ + ++L E +D + +++++ ++ DLR ATVY+SL
Sbjct: 5 RVRKIQEFIKQEVSAMLLR-EIKDPRVG--FVTVTDAKITGDLREATVYVSLYGSPEEKR 61
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+ L + + R +G+ L +RY P + F DTSL K++ L+ +
Sbjct: 62 ATLQVLRQSAGYFRTAVGKRL-GIRYAPSITFAEDTSLDYGMKIDRLLRDVE 112
>gi|238650293|ref|YP_002916145.1| ribosome-binding factor A [Rickettsia peacockii str. Rustic]
gi|259552070|sp|C4K0J6|RBFA_RICPU RecName: Full=Ribosome-binding factor A
gi|238624391|gb|ACR47097.1| ribosome-binding factor A [Rickettsia peacockii str. Rustic]
Length = 120
Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 58/120 (48%), Gaps = 2/120 (1%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
MK +S R ++ + AL+ ++ + D + ++I++V ++ DL++A Y
Sbjct: 1 MKKLTKTHSHRQQKLASIINEALIEILRRGKMLDSRLFDCPLTITKVIVTTDLKIANCYF 60
Query: 61 SLPLDV-SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ D ++ ALN + IR I + N+++ P++RF YD + K+ L+
Sbjct: 61 LPFNTKLTIDEIMDALNNSKNAIRNFITNKI-NMKFSPDIRFHYDHGFDNAIKVAHLLKD 119
>gi|89900919|ref|YP_523390.1| ribosome-binding factor A [Rhodoferax ferrireducens T118]
gi|122479182|sp|Q21WJ4|RBFA_RHOFD RecName: Full=Ribosome-binding factor A
gi|89345656|gb|ABD69859.1| ribosome-binding factor A [Rhodoferax ferrireducens T118]
Length = 122
Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats.
Identities = 33/127 (25%), Positives = 59/127 (46%), Gaps = 6/127 (4%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
M+ K+ + RA +V ++++ L +I E +D + +++I V ++ D A VY
Sbjct: 1 MRKKSKTPN-RAFKVADQIQRDLTELIAR-ELKDPRVG--MVTIQAVEVTPDYAHAKVYF 56
Query: 61 SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
SL P LN F+R + + L ++ VP L F +D + + +NAL+
Sbjct: 57 SLLAG-DPKACTEGLNQAAGFLRAGLFKRL-HIHTVPTLHFLFDQTTERAADMNALIARA 114
Query: 121 KIPVALE 127
A E
Sbjct: 115 VASRAKE 121
>gi|319787426|ref|YP_004146901.1| ribosome-binding factor A [Pseudoxanthomonas suwonensis 11-1]
gi|317465938|gb|ADV27670.1| ribosome-binding factor A [Pseudoxanthomonas suwonensis 11-1]
Length = 120
Score = 110 bits (277), Expect = 5e-23, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 55/120 (45%), Gaps = 5/120 (4%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
K+ R RV ++R L ++ R +S+S+V ++ DL A V+++ +
Sbjct: 4 KSFHRTDRVSAQLRRELGTLVHEAV---REHGLPSVSVSDVEVTRDLAHAKVFVTALMPE 60
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM-CLPKIPVA 125
+ AL +R + R ++ +R+VPEL F YD S+ ++ L+ P P
Sbjct: 61 RSTEAVKALKELAYQLRMELARRVK-MRHVPELHFHYDDSVDRGERIETLLKANPPAPAD 119
>gi|218131518|ref|ZP_03460322.1| hypothetical protein BACEGG_03137 [Bacteroides eggerthii DSM 20697]
gi|317476473|ref|ZP_07935722.1| ribosome-binding factor A [Bacteroides eggerthii 1_2_48FAA]
gi|217986450|gb|EEC52787.1| hypothetical protein BACEGG_03137 [Bacteroides eggerthii DSM 20697]
gi|316907499|gb|EFV29204.1| ribosome-binding factor A [Bacteroides eggerthii 1_2_48FAA]
Length = 110
Score = 110 bits (277), Expect = 5e-23, Method: Composition-based stats.
Identities = 33/112 (29%), Positives = 60/112 (53%), Gaps = 4/112 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
+ R ++ ++ L + L Q + +S +IS+S V +S D+ VA Y+S+
Sbjct: 1 METTRQNKIARLLQKELSDIFL---LQTKSMSGILISVSAVRISPDMSVARAYLSVFPSE 57
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRN-LRYVPELRFRYDTSLQSYWKLNALM 117
+ +I +N N+K IR +G +R+ LR +PEL+F D SL +++ L+
Sbjct: 58 KSEEIIKNINANMKSIRFELGTRVRHQLRIIPELKFFVDDSLDYLERIDELL 109
>gi|331090934|ref|ZP_08339776.1| ribosome-binding factor A [Lachnospiraceae bacterium 2_1_46FAA]
gi|330405156|gb|EGG84692.1| ribosome-binding factor A [Lachnospiraceae bacterium 2_1_46FAA]
Length = 123
Score = 110 bits (277), Expect = 5e-23, Method: Composition-based stats.
Identities = 29/123 (23%), Positives = 58/123 (47%), Gaps = 6/123 (4%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
KNS + RV EV+ L I+ +D ++ + S+ V ++ DL+ YIS+ D
Sbjct: 3 KNSIKNTRVNMEVQRELSN-IVRGGIKDPRVAP-MTSVVAVEVAPDLKTCKAYISVFGDE 60
Query: 67 -SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
+ + + L +IR + +L N+R PE++F D S+ ++ + +
Sbjct: 61 MAQEDTLKGLQSAEGYIRRELAHNL-NMRNTPEIKFVLDQSIAYGVAMSK--KIDDVTKD 117
Query: 126 LEK 128
+++
Sbjct: 118 IKE 120
>gi|33239584|ref|NP_874526.1| ribosome-binding factor A [Prochlorococcus marinus subsp. marinus
str. CCMP1375]
gi|39931797|sp|Q7VE81|RBFA_PROMA RecName: Full=Ribosome-binding factor A
gi|33237109|gb|AAP99178.1| Ribosome-binding factor A [Prochlorococcus marinus subsp. marinus
str. CCMP1375]
Length = 130
Score = 110 bits (277), Expect = 5e-23, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 62/120 (51%), Gaps = 3/120 (2%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV- 66
SRR +V +R + ++ N +D+ ++ +I+I+EV +S DL+ +++S+ +
Sbjct: 3 QSRRVEKVAALIRKEMSELLSNG-IRDQRVNTTMITITEVEVSGDLQHCKIFVSIYGNEI 61
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVAL 126
D V S L + F++G +GR L +R PE+ F+ D ++ + L+ + +
Sbjct: 62 QKDEVFSGLEASQSFLKGELGRRL-QMRRAPEVVFKLDRGMEKGISVLNLLEKLEAERNI 120
>gi|71901437|ref|ZP_00683527.1| Ribosome-binding factor A [Xylella fastidiosa Ann-1]
gi|71728808|gb|EAO30949.1| Ribosome-binding factor A [Xylella fastidiosa Ann-1]
Length = 125
Score = 110 bits (277), Expect = 5e-23, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 60/122 (49%), Gaps = 4/122 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
K+ +R RV ++R L + +D + S+S+V ++ D+ A V+++
Sbjct: 4 KSFQRTERVSVQIRRDLGA-FVQAAVRDHGLPSM--SVSDVEVTRDMAHAKVFVTALQAE 60
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVAL 126
++ L + +R ++ +++R LR+VPEL F YD SL ++N L+ P
Sbjct: 61 RSFEAVAGLKALARELRMQLAQTMR-LRFVPELHFHYDDSLDRGERINTLLRDLIPPADA 119
Query: 127 EK 128
EK
Sbjct: 120 EK 121
>gi|325265384|ref|ZP_08132108.1| ribosome-binding factor A [Clostridium sp. D5]
gi|324029385|gb|EGB90676.1| ribosome-binding factor A [Clostridium sp. D5]
Length = 123
Score = 110 bits (277), Expect = 6e-23, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 57/120 (47%), Gaps = 8/120 (6%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
KNS + R+ EV+ L ++ +D ++ + S+ V ++ DL+ YIS+ D
Sbjct: 3 KNSIKNTRINTEVQRELSNIL-RGGIKDPRVAP-MTSVVAVEVAPDLKTCKAYISVLGDK 60
Query: 67 S-PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYW----KLNALMCLPK 121
+ I L +IR + R++ N+R PE+RF D S++ K++ L K
Sbjct: 61 KAQEDTIKGLQSAEGYIRRELARTI-NMRNTPEIRFIMDQSIEYGVNMSKKIDELTRDLK 119
>gi|116333940|ref|YP_795467.1| ribosome-binding factor A [Lactobacillus brevis ATCC 367]
gi|122269376|sp|Q03QT6|RBFA_LACBA RecName: Full=Ribosome-binding factor A
gi|116099287|gb|ABJ64436.1| ribosome-binding factor A [Lactobacillus brevis ATCC 367]
Length = 116
Score = 110 bits (277), Expect = 6e-23, Method: Composition-based stats.
Identities = 26/113 (23%), Positives = 55/113 (48%), Gaps = 6/113 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV--SP 68
R R+ +E++ + ++L +D + ++++ V ++ DL+ AT+Y S+ D S
Sbjct: 5 RVGRLEQEIQREVTDILLKR-VRDPRVEG--VTVTGVEVTGDLQQATIYYSILSDKASSA 61
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
++ + L IR +G L + PEL F D S++ +++ L+
Sbjct: 62 EKTAAGLKKATGLIRSELGSRLSIYK-TPELTFEQDGSVRYGSRIDELLNDLH 113
>gi|167753901|ref|ZP_02426028.1| hypothetical protein ALIPUT_02186 [Alistipes putredinis DSM 17216]
gi|167658526|gb|EDS02656.1| hypothetical protein ALIPUT_02186 [Alistipes putredinis DSM 17216]
Length = 114
Score = 110 bits (277), Expect = 6e-23, Method: Composition-based stats.
Identities = 23/116 (19%), Positives = 59/116 (50%), Gaps = 3/116 (2%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
+ R ++ ++++ + + + ++ +++++ V +S D A +Y+S+
Sbjct: 1 METTRQQKIAKQIQRDMAEIFQKEGAE--IVRGVLVTVTAVRVSPDFSYAKIYVSVFPFE 58
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRN-LRYVPELRFRYDTSLQSYWKLNALMCLPK 121
V++ L + F+R +G+ +RN L+ VPE++F D SL+ +++ M +
Sbjct: 59 QNAAVMATLEQHNWFLRRALGQRIRNQLKTVPEIQFFLDDSLEYIEQIDRAMHREE 114
>gi|229586718|ref|YP_002845219.1| ribosome-binding factor A [Rickettsia africae ESF-5]
gi|259552067|sp|C3PNG6|RBFA_RICAE RecName: Full=Ribosome-binding factor A
gi|228021768|gb|ACP53476.1| Ribosome-binding factor A [Rickettsia africae ESF-5]
Length = 120
Score = 110 bits (277), Expect = 6e-23, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 58/120 (48%), Gaps = 2/120 (1%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
MK +S R ++ + AL+ ++ + D + ++I++V ++ DL++A Y
Sbjct: 1 MKKLTKTHSHRQQKLASIINEALIEILRRGKMLDTRLFDCPLTITKVIVTADLKIANCYF 60
Query: 61 SLPLDV-SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ D ++ ALN + IR I + N+++ P++RF YD + K+ L+
Sbjct: 61 LPFNTKLTIDEIMDALNNSKNAIRNFITNKI-NMKFSPDIRFYYDHGFDNAIKVAHLLKD 119
>gi|156741119|ref|YP_001431248.1| ribosome-binding factor A [Roseiflexus castenholzii DSM 13941]
gi|189039554|sp|A7NID0|RBFA_ROSCS RecName: Full=Ribosome-binding factor A
gi|156232447|gb|ABU57230.1| ribosome-binding factor A [Roseiflexus castenholzii DSM 13941]
Length = 130
Score = 110 bits (277), Expect = 6e-23, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 57/118 (48%), Gaps = 4/118 (3%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD-VS 67
S+R ++G E++ L ++ E +D + ++ V ++ DL++A V IS+
Sbjct: 2 SKRTEQLGHEIQRILGEIL-QYELKDPRVG--FATVVGVEVTADLQIARVRISVMGTPEE 58
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
++AL F+R R+ L LR+VPELR DTS+ ++ L+ A
Sbjct: 59 RKETMAALERAKGFLRRRLAEELNYLRFVPELRLILDTSVDYSLHIDELLRRAAAERA 116
>gi|269837287|ref|YP_003319515.1| ribosome-binding factor A [Sphaerobacter thermophilus DSM 20745]
gi|269786550|gb|ACZ38693.1| ribosome-binding factor A [Sphaerobacter thermophilus DSM 20745]
Length = 135
Score = 110 bits (277), Expect = 6e-23, Method: Composition-based stats.
Identities = 33/122 (27%), Positives = 64/122 (52%), Gaps = 5/122 (4%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-D 65
SRR +++ + +R + ++ E +D + + SI+ V +S DLR A VY+S+ +
Sbjct: 1 MTSRRQVQLADFLRDEISEILQR-EMKDPRLG--LASITRVELSPDLRYAKVYVSVLGSE 57
Query: 66 VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
+ ++AL F+R + +R +R+VPE+RFR D S++ + + +P +
Sbjct: 58 EDREATMAALTGAAGFVRHLLKPRMR-VRHVPEIRFRLDRSMEHAEVIQRTLRELNLPPS 116
Query: 126 LE 127
E
Sbjct: 117 TE 118
>gi|163848558|ref|YP_001636602.1| ribosome-binding factor A [Chloroflexus aurantiacus J-10-fl]
gi|222526493|ref|YP_002570964.1| ribosome-binding factor A [Chloroflexus sp. Y-400-fl]
gi|182676538|sp|A9WGP7|RBFA_CHLAA RecName: Full=Ribosome-binding factor A
gi|254789741|sp|B9LBJ3|RBFA_CHLSY RecName: Full=Ribosome-binding factor A
gi|163669847|gb|ABY36213.1| ribosome-binding factor A [Chloroflexus aurantiacus J-10-fl]
gi|222450372|gb|ACM54638.1| ribosome-binding factor A [Chloroflexus sp. Y-400-fl]
Length = 127
Score = 110 bits (276), Expect = 6e-23, Method: Composition-based stats.
Identities = 29/110 (26%), Positives = 52/110 (47%), Gaps = 4/110 (3%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD-VSP 68
R +V + ++ L VI E +D + +++ V +S DL+ A V IS+
Sbjct: 4 HRLQQVADTMQRVLGDVI-QKELKDPRVG--FATVTGVEVSADLQHAKVRISVMGSPEER 60
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ ++AL F+R R+ + +R+VPEL DTSL ++ +
Sbjct: 61 EAAMAALQRARGFLRKRVAEEMSYMRFVPELHLIQDTSLDYTMHMDEVFR 110
>gi|331084716|ref|ZP_08333804.1| ribosome-binding factor A [Lachnospiraceae bacterium 9_1_43BFAA]
gi|330410810|gb|EGG90232.1| ribosome-binding factor A [Lachnospiraceae bacterium 9_1_43BFAA]
Length = 119
Score = 110 bits (276), Expect = 6e-23, Method: Composition-based stats.
Identities = 27/121 (22%), Positives = 57/121 (47%), Gaps = 6/121 (4%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
KNS + RV EV+ L ++ + +D ++ + S+ V ++ DL+ Y+S+ D
Sbjct: 3 KNSIKNTRVNMEVQRELSSIL-RDGIKDPRVAP-MTSVVAVEVAPDLKTCKAYVSVLGDE 60
Query: 67 S-PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
++ L +IR + L N+R PE++F D S++ ++ + ++
Sbjct: 61 KAQQDTVAGLQSAEGYIRRELAHRL-NMRNTPEVKFVLDQSIEYGVSMSK--KIDEVTKD 117
Query: 126 L 126
+
Sbjct: 118 I 118
>gi|260221432|emb|CBA29990.1| Ribosome-binding factor A [Curvibacter putative symbiont of Hydra
magnipapillata]
Length = 122
Score = 110 bits (276), Expect = 6e-23, Method: Composition-based stats.
Identities = 31/127 (24%), Positives = 60/127 (47%), Gaps = 6/127 (4%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
M+ K+ + R+ +V ++++ L +I E +D + +++I V ++ D A V+
Sbjct: 1 MRKKSATPN-RSFQVADQIQRDLAELIAR-ELKDPRVG--MVTIQGVEVTPDYAHAKVFF 56
Query: 61 SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
SL + P LN F+R + + L ++ VP L F +D + + +NAL+
Sbjct: 57 SLLVG-DPVETAEGLNQAAGFLRAGLFKRL-HIHTVPTLHFIFDQTTERAADMNALIARA 114
Query: 121 KIPVALE 127
A E
Sbjct: 115 VSSRAKE 121
>gi|28198123|ref|NP_778437.1| ribosome-binding factor A [Xylella fastidiosa Temecula1]
gi|182680751|ref|YP_001828911.1| ribosome-binding factor A [Xylella fastidiosa M23]
gi|32129950|sp|Q87EV3|RBFA_XYLFT RecName: Full=Ribosome-binding factor A
gi|238691074|sp|B2I727|RBFA_XYLF2 RecName: Full=Ribosome-binding factor A
gi|28056183|gb|AAO28086.1| ribosomal-binding factor A [Xylella fastidiosa Temecula1]
gi|182630861|gb|ACB91637.1| ribosome-binding factor A [Xylella fastidiosa M23]
gi|307579215|gb|ADN63184.1| ribosome-binding factor A [Xylella fastidiosa subsp. fastidiosa
GB514]
Length = 125
Score = 110 bits (276), Expect = 6e-23, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 60/122 (49%), Gaps = 4/122 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
K+ +R R+ ++R L + +D + S+S+V ++ D+ A V+++
Sbjct: 4 KSFQRTERISVQIRRDLGA-FVQAAVRDHGLPSM--SVSDVEVTRDMAHAKVFVTALQAE 60
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVAL 126
++ L + +R ++ +++R LR+VPEL F YD SL +++ L+ P
Sbjct: 61 RSFEAVAGLKALARELRMQLAQTMR-LRFVPELHFHYDDSLDRGERIDTLLRDLIPPADA 119
Query: 127 EK 128
EK
Sbjct: 120 EK 121
>gi|157828480|ref|YP_001494722.1| ribosome-binding factor A [Rickettsia rickettsii str. 'Sheila
Smith']
gi|165933198|ref|YP_001649987.1| ribosome-binding factor A [Rickettsia rickettsii str. Iowa]
gi|166219401|sp|A8GS39|RBFA_RICRS RecName: Full=Ribosome-binding factor A
gi|189039553|sp|B0BXK5|RBFA_RICRO RecName: Full=Ribosome-binding factor A
gi|157800961|gb|ABV76214.1| ribosome-binding factor A [Rickettsia rickettsii str. 'Sheila
Smith']
gi|165908285|gb|ABY72581.1| hypothetical protein RrIowa_0723 [Rickettsia rickettsii str. Iowa]
Length = 120
Score = 110 bits (276), Expect = 6e-23, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 58/120 (48%), Gaps = 2/120 (1%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
MK +S R ++ + AL+ ++ + D + ++I++V ++ DL++A Y
Sbjct: 1 MKKLTKTHSHRQQKLASIINEALIEILRRGKMLDSRLFDCPLTITKVIVTTDLKIANCYF 60
Query: 61 SLPLDV-SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ D ++ ALN + IR I + ++++ P++RF YD + K+ L+
Sbjct: 61 LPFNTKLTIDEIMDALNNSKNAIRNFITNKI-HMKFSPDIRFHYDHGFDNAIKVAHLLKD 119
>gi|167627173|ref|YP_001677673.1| ribosome-binding factor A [Francisella philomiragia subsp.
philomiragia ATCC 25017]
gi|189039542|sp|B0TWR4|RBFA_FRAP2 RecName: Full=Ribosome-binding factor A
gi|167597174|gb|ABZ87172.1| ribosome-binding factor A [Francisella philomiragia subsp.
philomiragia ATCC 25017]
Length = 143
Score = 110 bits (276), Expect = 7e-23, Method: Composition-based stats.
Identities = 37/117 (31%), Positives = 56/117 (47%), Gaps = 9/117 (7%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
R RV E++ + ++L + +D ++ +I+EV +S DL A VY +
Sbjct: 6 RVQRVASELQKVIS-LLLRTKIKDSKLATA--TITEVELSKDLSYAKVYYTCLDIQEAQY 62
Query: 71 VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALE 127
+ A + F R I +SL NLR VP L+F YD SL ++ KI ALE
Sbjct: 63 ISKAFEKSKGFFRSSIAKSL-NLRIVPNLKFVYDKSLDYGMEMEG-----KIQQALE 113
>gi|119477400|ref|ZP_01617591.1| ribosome-binding factor A [marine gamma proteobacterium HTCC2143]
gi|119449326|gb|EAW30565.1| ribosome-binding factor A [marine gamma proteobacterium HTCC2143]
Length = 133
Score = 110 bits (276), Expect = 7e-23, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 58/115 (50%), Gaps = 7/115 (6%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
+ R RV + ++ L +I +E +D + ++SI++V +S D+ A V+ ++
Sbjct: 2 AREYSRTQRVADFLKQELATLI-QSEMRDPRVG--MVSITDVEVSRDMSHAKVFTTVLGK 58
Query: 66 VSPDRVISA---LNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
S A LN F+R + + + N R P+LRF +D+S+ L++L+
Sbjct: 59 ESEQEAAEAIAVLNKAAGFLRSEMAK-INNARTTPKLRFYFDSSVGRGQFLSSLI 112
>gi|121609700|ref|YP_997507.1| ribosome-binding factor A [Verminephrobacter eiseniae EF01-2]
gi|166199573|sp|A1WLI2|RBFA_VEREI RecName: Full=Ribosome-binding factor A
gi|121554340|gb|ABM58489.1| ribosome-binding factor A [Verminephrobacter eiseniae EF01-2]
Length = 120
Score = 110 bits (276), Expect = 7e-23, Method: Composition-based stats.
Identities = 31/123 (25%), Positives = 59/123 (47%), Gaps = 6/123 (4%)
Query: 5 NPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL 64
K S RA +V ++++ L ++ +D + ++++ V +S D A V+ SL
Sbjct: 3 GKKPSHRAFKVADQIQRDLTQLLAR--LKDPRLG--LVTLQGVEISPDYAHAKVFFSLLT 58
Query: 65 DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPV 124
+P++ +AL+ F+R + + L + VP L F +D S + +NAL+
Sbjct: 59 G-TPEQTQAALDQAAGFLRNGLFKRL-QIHTVPTLHFVFDRSCERAADMNALIAKAVSTR 116
Query: 125 ALE 127
A E
Sbjct: 117 AKE 119
>gi|15836841|ref|NP_297529.1| ribosome-binding factor A [Xylella fastidiosa 9a5c]
gi|20978662|sp|Q9PGR2|RBFA_XYLFA RecName: Full=Ribosome-binding factor A
gi|9105047|gb|AAF83049.1|AE003877_4 ribosomal-binding factor A [Xylella fastidiosa 9a5c]
Length = 125
Score = 110 bits (276), Expect = 7e-23, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 60/122 (49%), Gaps = 4/122 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
K+ +RA R+ ++ L ++ +D + S+S+V ++ D+ A V+++
Sbjct: 4 KSFQRAERISVQIHRDLGA-LVQAAVRDHGLPSM--SVSDVEVTRDMAHAKVFVTALQAE 60
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVAL 126
++ L + +R ++ ++R LR+VPEL F YD SL ++N L+ P
Sbjct: 61 RSFEAVAGLKALARELRMQLAHTMR-LRFVPELHFHYDDSLDRGERINTLLRDLIPPADA 119
Query: 127 EK 128
EK
Sbjct: 120 EK 121
>gi|313897482|ref|ZP_07831025.1| ribosome-binding factor A [Clostridium sp. HGF2]
gi|312957852|gb|EFR39477.1| ribosome-binding factor A [Clostridium sp. HGF2]
Length = 112
Score = 110 bits (276), Expect = 7e-23, Method: Composition-based stats.
Identities = 25/108 (23%), Positives = 55/108 (50%), Gaps = 5/108 (4%)
Query: 12 ALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRV 71
A ++ ++ + +I +D I I+I++V ++ DL +A +Y+S +
Sbjct: 5 AEKIAGIIQKEISEII-QFSLKDPKIG--FITITDVTVTNDLSIAKIYVSFLGQKPREEA 61
Query: 72 -ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ AL+ + ++R + + + +R VPEL F+ D SL+ K+ ++
Sbjct: 62 GMKALDRSRGYLRSELAKRM-TIRKVPELIFKLDDSLERGNKIERIIS 108
>gi|225572732|ref|ZP_03781487.1| hypothetical protein RUMHYD_00921 [Blautia hydrogenotrophica DSM
10507]
gi|225039905|gb|EEG50151.1| hypothetical protein RUMHYD_00921 [Blautia hydrogenotrophica DSM
10507]
Length = 126
Score = 110 bits (276), Expect = 7e-23, Method: Composition-based stats.
Identities = 34/112 (30%), Positives = 57/112 (50%), Gaps = 4/112 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
KNS + RV EV L +I NE +D I + S+ V ++ DL+ YIS+ +
Sbjct: 3 KNSIKNTRVNTEVLRELSNII-RNEIKDPRIHP-MTSVMAVEVAPDLKTCKAYISVLGNQ 60
Query: 67 S-PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ + L ++R ++ R+L NLR PE+RF D S++ ++ L+
Sbjct: 61 EAQEETMVGLKSAESYVRRQLARNL-NLRNTPEIRFLLDQSIEYGVHMSKLI 111
>gi|241667735|ref|ZP_04755313.1| ribosome-binding factor A [Francisella philomiragia subsp.
philomiragia ATCC 25015]
gi|254876279|ref|ZP_05248989.1| ribosome-binding factor A [Francisella philomiragia subsp.
philomiragia ATCC 25015]
gi|254842300|gb|EET20714.1| ribosome-binding factor A [Francisella philomiragia subsp.
philomiragia ATCC 25015]
Length = 143
Score = 110 bits (276), Expect = 7e-23, Method: Composition-based stats.
Identities = 37/117 (31%), Positives = 56/117 (47%), Gaps = 9/117 (7%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
R RV E++ + ++L + +D ++ +I+EV +S DL A VY +
Sbjct: 6 RVQRVASELQKVIS-LLLRTKIKDSKLATA--TITEVELSKDLSYAKVYYTCLDIQEAQY 62
Query: 71 VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALE 127
+ A + F R I +SL NLR VP L+F YD SL ++ KI ALE
Sbjct: 63 ISKAFEKSKGFFRSSIAKSL-NLRIVPNLKFIYDKSLDYGMEMEG-----KIQQALE 113
>gi|163791147|ref|ZP_02185566.1| ribosome-binding factor A [Carnobacterium sp. AT7]
gi|159873619|gb|EDP67704.1| ribosome-binding factor A [Carnobacterium sp. AT7]
Length = 115
Score = 110 bits (276), Expect = 7e-23, Method: Composition-based stats.
Identities = 25/113 (22%), Positives = 57/113 (50%), Gaps = 6/113 (5%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV-- 66
+ R RV +E++ + ++ +D ++ ++I++V ++ DL+ ATV+ S+ D
Sbjct: 3 NHRIGRVSQEIQREVNDILKKR-VKDPRVAD--VNITDVRVTGDLQQATVFYSILSDKAS 59
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
++ L+ +R +G+ L +L PE+ F D S++ ++ L+
Sbjct: 60 EREKTQLGLDKASGLVRSELGKRL-SLYKTPEISFERDESVEYGNHIDELLRN 111
>gi|328957412|ref|YP_004374798.1| ribosome-binding factor A [Carnobacterium sp. 17-4]
gi|328673736|gb|AEB29782.1| ribosome-binding factor A [Carnobacterium sp. 17-4]
Length = 115
Score = 110 bits (276), Expect = 8e-23, Method: Composition-based stats.
Identities = 25/113 (22%), Positives = 58/113 (51%), Gaps = 6/113 (5%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV-- 66
+ R RV +E++ + ++ +D ++ ++I++V ++ DL+ ATV+ S+ D
Sbjct: 3 NHRIGRVSQEIQREVNDILKKR-VKDPRVAD--VNITDVRVTGDLQQATVFYSILSDKAS 59
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
++ L+ +R +G+ L +L PE++F D S++ ++ L+
Sbjct: 60 DREKTQLGLDKASGLVRSELGQRL-SLYKTPEIKFERDESVEYGNHIDELLRN 111
>gi|148651974|ref|YP_001279067.1| ribosome-binding factor A [Psychrobacter sp. PRwf-1]
gi|172048446|sp|A5WBS6|RBFA_PSYWF RecName: Full=Ribosome-binding factor A
gi|148571058|gb|ABQ93117.1| ribosome-binding factor A [Psychrobacter sp. PRwf-1]
Length = 140
Score = 110 bits (276), Expect = 8e-23, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 55/118 (46%), Gaps = 11/118 (9%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV-- 66
++R R+G++++ L V++ ++ D + ++IS V +S DL A VY+++
Sbjct: 2 NQRLQRLGDQIQRELA-VLIRDDVNDPRL-TGFVTISSVKVSSDLGYADVYVTIMEPELN 59
Query: 67 ------SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
S + + LN F+R + SL+ R P LRF YD + L+
Sbjct: 60 DAMSKHSHEESLKVLNKAAGFLRTELSHSLKT-RTTPRLRFHYDEVTARGNYMMDLIN 116
>gi|149926270|ref|ZP_01914532.1| ribosome-binding factor A [Limnobacter sp. MED105]
gi|149825088|gb|EDM84300.1| ribosome-binding factor A [Limnobacter sp. MED105]
Length = 134
Score = 110 bits (275), Expect = 8e-23, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 62/118 (52%), Gaps = 8/118 (6%)
Query: 2 KNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS 61
K K P R +RV E+++ L +I E +D + ++I++V ++ D ATVY S
Sbjct: 4 KKKAPA---RGIRVAEQIQKDLAELIPR-ELRDPRLG--FVTITDVELTPDYAYATVYFS 57
Query: 62 LPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ S + ALN + ++R I + L ++ VP LRF++D S++ ++ ++
Sbjct: 58 VLTG-SAETTEEALNDSSGYLRNLIFKKL-HIHTVPTLRFKHDQSVERGAEMAQIIDR 113
>gi|239997160|ref|ZP_04717684.1| ribosome-binding factor A [Alteromonas macleodii ATCC 27126]
Length = 133
Score = 110 bits (275), Expect = 8e-23, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 59/116 (50%), Gaps = 4/116 (3%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL- 64
+ R RV ++V + ++ NE++ R+ +I++S+V +S DL A +++++
Sbjct: 2 AREFSRTDRVAQQVHKEVASIL-QNEYKHRVGDMPLITVSDVDVSRDLAHAKIFVTIYNS 60
Query: 65 -DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ I L KFIR + + +R +R VP+L F D S+ +++ L+
Sbjct: 61 TEEEGKAQIKQLAEYKKFIRSILAKRIR-MRSVPDLHFFEDKSIVEGMRISNLVSQ 115
>gi|330997439|ref|ZP_08321290.1| ribosome-binding factor A [Paraprevotella xylaniphila YIT 11841]
gi|329570813|gb|EGG52529.1| ribosome-binding factor A [Paraprevotella xylaniphila YIT 11841]
Length = 111
Score = 110 bits (275), Expect = 8e-23, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 57/112 (50%), Gaps = 4/112 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
+ R ++ ++ L + + Q + + ++S+S +S DL + VY+S+
Sbjct: 1 METTRQNKISRLIQKELSEIFM---LQTKAMKGVLVSVSACRISPDLSICRVYLSIFPSR 57
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRN-LRYVPELRFRYDTSLQSYWKLNALM 117
+ +I +N N+K IR +G +R+ LR +PEL+F D SL ++ L+
Sbjct: 58 QSEEIIKNINGNMKAIRYELGTRVRHQLRIIPELKFFVDDSLDYIENIDKLL 109
>gi|319900773|ref|YP_004160501.1| ribosome-binding factor A [Bacteroides helcogenes P 36-108]
gi|319415804|gb|ADV42915.1| ribosome-binding factor A [Bacteroides helcogenes P 36-108]
Length = 110
Score = 110 bits (275), Expect = 8e-23, Method: Composition-based stats.
Identities = 31/112 (27%), Positives = 59/112 (52%), Gaps = 4/112 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
+ R ++ ++ L + L Q + + ++S+S V +S D+ VA Y+S+
Sbjct: 1 METTRQNKIARLLQKELSDIFL---LQTKSMPGILVSVSAVRISPDMSVARAYLSIFPSE 57
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRN-LRYVPELRFRYDTSLQSYWKLNALM 117
+ +I +N N+K +R +G +R+ LR +PEL+F D SL K++ L+
Sbjct: 58 KGEEMIKNINANMKSVRYELGTRVRHQLRIIPELKFFVDDSLDYLEKIDELL 109
>gi|34580479|ref|ZP_00141959.1| ribosome-binding factor A [Rickettsia sibirica 246]
gi|28261864|gb|EAA25368.1| ribosome-binding factor A [Rickettsia sibirica 246]
Length = 120
Score = 110 bits (275), Expect = 9e-23, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 57/120 (47%), Gaps = 2/120 (1%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
MK +S R ++ + L+ ++ + D + ++I++V ++ DL++A Y
Sbjct: 1 MKKLTKTHSHRQQKLASIINEVLIEILRRGKMLDTRLFDCPLTITKVIVTADLKIANCYF 60
Query: 61 SLPLDV-SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ D ++ ALN + IR I + N+++ P++RF YD + K+ L+
Sbjct: 61 LPFNTKLTIDEIMDALNNSKNAIRNFITNKI-NMKFSPDIRFHYDHGFDNAIKVAHLLKD 119
>gi|197303048|ref|ZP_03168096.1| hypothetical protein RUMLAC_01775 [Ruminococcus lactaris ATCC
29176]
gi|197297903|gb|EDY32455.1| hypothetical protein RUMLAC_01775 [Ruminococcus lactaris ATCC
29176]
Length = 127
Score = 110 bits (275), Expect = 9e-23, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 57/121 (47%), Gaps = 6/121 (4%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
KNS + RV EV+ L ++ +D ++ + S+ V ++ DL+ YIS+ D
Sbjct: 3 KNSIKNTRVNAEVQRELSNILRAG-IKDPRVAP-MTSVVAVEVAPDLKTCKAYISVLGDE 60
Query: 67 S-PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
I L +IR + R++ N+R PE+RF D S++ ++ + ++
Sbjct: 61 KAQQDTIRGLQSAEGYIRRELARTI-NMRNTPEIRFIVDQSIEYGVNISK--KIDEVTRD 117
Query: 126 L 126
L
Sbjct: 118 L 118
>gi|169350442|ref|ZP_02867380.1| hypothetical protein CLOSPI_01210 [Clostridium spiroforme DSM 1552]
gi|169292762|gb|EDS74895.1| hypothetical protein CLOSPI_01210 [Clostridium spiroforme DSM 1552]
Length = 114
Score = 110 bits (275), Expect = 9e-23, Method: Composition-based stats.
Identities = 30/108 (27%), Positives = 53/108 (49%), Gaps = 5/108 (4%)
Query: 13 LRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-DVSPDRV 71
+V ++ L ++ E +D I +I+ V ++ DL +A +Y++ D +
Sbjct: 6 EKVSGIIQRELSQIL-QMEVRDPKIG--FCTITAVDLTNDLSIAKIYVTFLGKDFDTRKG 62
Query: 72 ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ AL + FIR + + L +R VPEL F DTSLQ K+ ++
Sbjct: 63 MQALERSKGFIRSLLAKRL-TIRKVPELHFVNDTSLQYGNKIEKIIDD 109
>gi|206889505|ref|YP_002249675.1| ribosome-binding factor A [Thermodesulfovibrio yellowstonii DSM
11347]
gi|226723613|sp|B5YHT9|RBFA_THEYD RecName: Full=Ribosome-binding factor A
gi|206741443|gb|ACI20500.1| ribosome-binding factor A [Thermodesulfovibrio yellowstonii DSM
11347]
Length = 118
Score = 110 bits (275), Expect = 9e-23, Method: Composition-based stats.
Identities = 29/115 (25%), Positives = 61/115 (53%), Gaps = 4/115 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
+ +RA R+ ++ + +IL ++ +D + I++++V +S DLR+A V+IS+
Sbjct: 2 QPYKRAQRLKVLLKEEVAEIIL-HKIKDPRLG--FITVTDVELSDDLRIAKVFISVLKTE 58
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+ LN F+R I + LR ++ +P F +D S+ ++++ L+ K
Sbjct: 59 DRQLTLQILNDAKGFVRSEIAKRLR-IKIIPTFEFLFDESIDRGFRIDQLLKEIK 112
>gi|225427802|ref|XP_002270280.1| PREDICTED: hypothetical protein [Vitis vinifera]
Length = 223
Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats.
Identities = 39/130 (30%), Positives = 66/130 (50%), Gaps = 15/130 (11%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQ------------DRLISRDVISISEVCMSVDLRV 55
N RR V +++R L ++L ++ DR +S + +IS+V +S DL+V
Sbjct: 60 NQRRVKMVAKQIRRELSDMLLTDKVLQFAVLPEAALGADRYLSS-LTTISDVEVSADLQV 118
Query: 56 ATVYISLPLDVSPDRV-ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLN 114
VY+S+ D V I+ L K++R +GR ++ LR PE+RF D SL+ ++
Sbjct: 119 VKVYVSVFGDEKGKEVAIAGLKSKAKYVRSELGRRMK-LRLTPEIRFVEDESLERGSRVI 177
Query: 115 ALMCLPKIPV 124
A++ K
Sbjct: 178 AILDRIKNEK 187
>gi|284048691|ref|YP_003399030.1| ribosome-binding factor A [Acidaminococcus fermentans DSM 20731]
gi|283952912|gb|ADB47715.1| ribosome-binding factor A [Acidaminococcus fermentans DSM 20731]
Length = 118
Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats.
Identities = 26/112 (23%), Positives = 52/112 (46%), Gaps = 5/112 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
RA ++ ++ + +++ + +D + ++I+ V +S DL A +Y+SL
Sbjct: 5 RAEKLQALIKQEMSNMMIR-DVKDPRVK--FVTITGVEVSNDLSYAKIYVSLYGSEEQQA 61
Query: 71 VI-SALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
L + F R I R + +LR P L F DTS++ + +++ K
Sbjct: 62 AAWKGLQSALGFFRREIARRI-DLRVAPVLSFHKDTSMEYSAHIESILHELK 112
>gi|300113658|ref|YP_003760233.1| ribosome-binding factor A [Nitrosococcus watsonii C-113]
gi|299539595|gb|ADJ27912.1| ribosome-binding factor A [Nitrosococcus watsonii C-113]
Length = 127
Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats.
Identities = 34/119 (28%), Positives = 63/119 (52%), Gaps = 6/119 (5%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-DVSP 68
RA RVGE ++ L +L E +D + ++++S V +S D R A VY++ +
Sbjct: 6 SRARRVGELLQRELAR-LLQAELKDPRVK--LVTVSHVRVSPDFRQAKVYVTFLGKEEDT 62
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALE 127
R ++ LN F++ + + + LR VP L+F YD S++ +L+AL+ + ++
Sbjct: 63 QRQLTILNKATGFLQHGLSQRV-ELRVVPRLQFVYDDSIKRGRRLSALI-DKAVQKDID 119
>gi|319937391|ref|ZP_08011798.1| ribosome-binding factor A [Coprobacillus sp. 29_1]
gi|319807757|gb|EFW04350.1| ribosome-binding factor A [Coprobacillus sp. 29_1]
Length = 114
Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats.
Identities = 27/105 (25%), Positives = 54/105 (51%), Gaps = 5/105 (4%)
Query: 13 LRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVI 72
++ ++ L ++ E +D I +I+ V + DL ++ +Y+S L+ + + +
Sbjct: 6 EKMNNIIQRELSTIL-QTEVKDPSIG--FCTITGVDTTADLSISKIYVS-FLNKNTKKSM 61
Query: 73 SALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
AL + FIR + + L +R PEL F DTSL+ K++ ++
Sbjct: 62 EALERSKGFIRSLLAKRL-TIRKCPELHFVLDTSLEYGNKIDNII 105
>gi|229550238|ref|ZP_04438963.1| ribosome-binding factor A [Enterococcus faecalis ATCC 29200]
gi|255973014|ref|ZP_05423600.1| ribosome-binding factor A [Enterococcus faecalis T1]
gi|257422837|ref|ZP_05599827.1| ribosome-binding factor A [Enterococcus faecalis X98]
gi|229304676|gb|EEN70672.1| ribosome-binding factor A [Enterococcus faecalis ATCC 29200]
gi|255964032|gb|EET96508.1| ribosome-binding factor A [Enterococcus faecalis T1]
gi|257164661|gb|EEU94621.1| ribosome-binding factor A [Enterococcus faecalis X98]
gi|315155986|gb|EFU00003.1| ribosome-binding factor A [Enterococcus faecalis TX0043]
gi|315157842|gb|EFU01859.1| ribosome-binding factor A [Enterococcus faecalis TX0312]
Length = 116
Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats.
Identities = 33/110 (30%), Positives = 53/110 (48%), Gaps = 6/110 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD--VSP 68
R RVG+E+ + LN +D + I+I++V ++ DL+ AT+Y SL D
Sbjct: 5 RDRRVGQEIMREVND-FLNKRIRDPRVQG--ITITDVRVTGDLQQATIYYSLLSDLASEQ 61
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ L+ IR +G+ L L PEL F D S+Q ++ L+
Sbjct: 62 QKAQQGLDKAKGLIRKELGQRL-TLYKTPELIFERDESVQYGNHIDELIR 110
>gi|288926934|ref|ZP_06420832.1| ribosome-binding factor A [Prevotella buccae D17]
gi|315607048|ref|ZP_07882052.1| ribosome-binding factor A [Prevotella buccae ATCC 33574]
gi|288336293|gb|EFC74676.1| ribosome-binding factor A [Prevotella buccae D17]
gi|315251102|gb|EFU31087.1| ribosome-binding factor A [Prevotella buccae ATCC 33574]
Length = 112
Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats.
Identities = 29/108 (26%), Positives = 52/108 (48%), Gaps = 4/108 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
R R+ ++ L + + Q R + ++S++ +S DL V T Y+S+
Sbjct: 5 RQNRIARLLQKELSLIFQS---QTRQMRGMMVSVTRAKVSPDLSVCTAYLSVFPSEKGAE 61
Query: 71 VISALNCNIKFIRGRIGRSL-RNLRYVPELRFRYDTSLQSYWKLNALM 117
+ + N K +R +GR + + LR +PELRF D SL ++ L+
Sbjct: 62 TLKNITANEKSVRFELGRRVGKQLRIIPELRFFLDDSLDYLEHIDELL 109
>gi|24378915|ref|NP_720870.1| ribosome-binding factor A [Streptococcus mutans UA159]
gi|29427727|sp|Q8DVP8|RBFA_STRMU RecName: Full=Ribosome-binding factor A
gi|24376799|gb|AAN58176.1|AE014889_1 ribosome binding factor A [Streptococcus mutans UA159]
Length = 116
Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 59/117 (50%), Gaps = 6/117 (5%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD- 65
++ R RVG E++ + ++ + +D + ++I++V MS DL +A VY ++ D
Sbjct: 1 MSNHRIERVGMEIKREVNEIL-QKKVRDPRVQG--VTITDVQMSGDLSLAKVYYTIMSDL 57
Query: 66 -VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+V L I+ +G++L + +P+L F D S++ K++ ++ +
Sbjct: 58 ASDNQKVQIGLEKAKGTIKRELGKNL-TMYKIPDLTFIKDESIEYGNKIDQMLRDLE 113
>gi|320530112|ref|ZP_08031182.1| ribosome-binding factor A [Selenomonas artemidis F0399]
gi|320137545|gb|EFW29457.1| ribosome-binding factor A [Selenomonas artemidis F0399]
Length = 112
Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats.
Identities = 28/104 (26%), Positives = 54/104 (51%), Gaps = 5/104 (4%)
Query: 19 VRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP-DRVISALNC 77
++ + +IL ++ +D I ++++ V + DLR A +Y+S+ D ++ LN
Sbjct: 1 MKQEISDIIL-HDLKDPRIG--FVTVTSVACTEDLREAKIYVSVMGDEKGVQESLAGLNR 57
Query: 78 NIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+ ++R IGR +R LR+ PE+ F DTSL + ++
Sbjct: 58 ALGYVRREIGRRIR-LRFTPEISFALDTSLNYSDHIQRILNTLH 100
>gi|93004906|ref|YP_579343.1| ribosome-binding factor A [Psychrobacter cryohalolentis K5]
gi|122416154|sp|Q1QEP4|RBFA_PSYCK RecName: Full=Ribosome-binding factor A
gi|92392584|gb|ABE73859.1| ribosome-binding factor A [Psychrobacter cryohalolentis K5]
Length = 134
Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats.
Identities = 29/128 (22%), Positives = 55/128 (42%), Gaps = 11/128 (8%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV-- 66
++R R+ ++++ L V++ + D + ++IS + +S DL A VY+++
Sbjct: 2 NQRLQRLADQIQRELA-VLIRDAVNDPRL-TGFVTISSIKVSPDLGYADVYVTIMEPELN 59
Query: 67 ------SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
+ + I LN F+R + SL+ R P LRF YD + L+
Sbjct: 60 DAMTMSNHEESIKVLNKAAGFLRTELSHSLKT-RTTPRLRFHYDEVTARGNYMMDLISKA 118
Query: 121 KIPVALEK 128
I +
Sbjct: 119 VIKTEENE 126
>gi|189465192|ref|ZP_03013977.1| hypothetical protein BACINT_01537 [Bacteroides intestinalis DSM
17393]
gi|189437466|gb|EDV06451.1| hypothetical protein BACINT_01537 [Bacteroides intestinalis DSM
17393]
Length = 110
Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats.
Identities = 32/112 (28%), Positives = 59/112 (52%), Gaps = 4/112 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
+ R ++ ++ L + L Q + + ++S+S V +S DL VA Y+S+
Sbjct: 1 METTRQNKICRLLQKELSEIFL---LQTKSMPGILVSVSAVRISPDLSVARAYLSIFPSE 57
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRN-LRYVPELRFRYDTSLQSYWKLNALM 117
+ +I +N N+K +R +G +R+ LR +PEL+F D SL K++ L+
Sbjct: 58 KAEEMIKNINENMKSVRYELGTRVRHQLRIIPELKFFVDDSLDYLEKIDELL 109
>gi|262277757|ref|ZP_06055550.1| ribosome-binding factor A [alpha proteobacterium HIMB114]
gi|262224860|gb|EEY75319.1| ribosome-binding factor A [alpha proteobacterium HIMB114]
Length = 121
Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 52/121 (42%), Gaps = 1/121 (0%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
MKN N ++R L+ GE ++ L + I +++I+EV +S DL+ A V+
Sbjct: 1 MKNNNQPFTQRQLKAGENLKKILARSFIQQNIILPEIDTKLVTITEVRVSPDLKHAKVFF 60
Query: 61 SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
D+ + LN I+ + +++P L F D S K+ L+
Sbjct: 61 MPLAGRDIDKFLKTLNEYSLEIKKSASKE-WTAKFMPNLNFVIDESFDYAEKIENLLLKD 119
Query: 121 K 121
K
Sbjct: 120 K 120
>gi|270295326|ref|ZP_06201527.1| ribosome-binding factor A [Bacteroides sp. D20]
gi|317478322|ref|ZP_07937486.1| ribosome-binding factor A [Bacteroides sp. 4_1_36]
gi|270274573|gb|EFA20434.1| ribosome-binding factor A [Bacteroides sp. D20]
gi|316905481|gb|EFV27271.1| ribosome-binding factor A [Bacteroides sp. 4_1_36]
Length = 110
Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats.
Identities = 31/112 (27%), Positives = 59/112 (52%), Gaps = 4/112 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
+ R ++ ++ L + L Q + + +IS+S V +S D+ VA Y+S+
Sbjct: 1 METTRQNKIARLLQKELSDIFL---LQTKSMPGILISVSAVRISPDMSVARAYLSIFPSE 57
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRN-LRYVPELRFRYDTSLQSYWKLNALM 117
+ ++ +N N+K IR +G +R+ LR +PEL+F D SL +++ L+
Sbjct: 58 KSEEIVKNINGNMKSIRFELGTRVRHQLRIIPELKFFVDDSLDYLERIDELL 109
>gi|57234294|ref|YP_181705.1| ribosome-binding factor A [Dehalococcoides ethenogenes 195]
gi|123618614|sp|Q3Z7U4|RBFA_DEHE1 RecName: Full=Ribosome-binding factor A
gi|57224742|gb|AAW39799.1| ribosome-binding factor A [Dehalococcoides ethenogenes 195]
Length = 118
Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats.
Identities = 34/112 (30%), Positives = 62/112 (55%), Gaps = 4/112 (3%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP-LDVS 67
SRR ++ + R+ + +L E +D + ++S++EV +S D+R ATVY+S D
Sbjct: 2 SRRVKKLNQLFRADISA-LLQKEVRDPRL-DTLLSVNEVDVSEDMRHATVYVSHLAGDEH 59
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
D +++ALN F R I + ++RY+P F +D +++ +LN L+
Sbjct: 60 KDEILAALNAAAGFFRTEIAKK-TDIRYMPVFNFIWDDTIERGVRLNTLIDR 110
>gi|124267109|ref|YP_001021113.1| ribosome-binding factor A [Methylibium petroleiphilum PM1]
gi|166218448|sp|A2SH39|RBFA_METPP RecName: Full=Ribosome-binding factor A
gi|124259884|gb|ABM94878.1| ribosome-binding factor A [Methylibium petroleiphilum PM1]
Length = 130
Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats.
Identities = 33/127 (25%), Positives = 62/127 (48%), Gaps = 7/127 (5%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
MK+K + R LRV ++++ + +I E +D I +++I V ++ D A V+
Sbjct: 1 MKHKRAIPN-RGLRVADQIQRDVAGLI--RELKDPRIG--MVTIQAVEVTPDYAHAKVFF 55
Query: 61 SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
S+ + P +ALN ++R + + L + VP L F++D + + LNAL+
Sbjct: 56 SVLIG-DPAECAAALNEAAGYLRNSLFKRL-QIHTVPTLHFQFDRTTERAADLNALIHQA 113
Query: 121 KIPVALE 127
A +
Sbjct: 114 NATRAKD 120
>gi|325661691|ref|ZP_08150314.1| ribosome-binding factor A [Lachnospiraceae bacterium 4_1_37FAA]
gi|325471944|gb|EGC75159.1| ribosome-binding factor A [Lachnospiraceae bacterium 4_1_37FAA]
Length = 119
Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 57/121 (47%), Gaps = 6/121 (4%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
KNS + RV EV+ L ++ + +D ++ + S+ V ++ DL+ YIS+ D
Sbjct: 3 KNSIKNTRVNMEVQRELSSIL-RDGIKDPRVAP-MTSVVAVEVAPDLKTCKAYISVLGDE 60
Query: 67 S-PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
++ L +IR + L N+R PE++F D S++ ++ + ++
Sbjct: 61 KAQQDTVAGLQSAEGYIRRELAHRL-NMRNTPEVKFVLDQSIEYGVSMSK--KIDEVTKD 117
Query: 126 L 126
+
Sbjct: 118 I 118
>gi|317968062|ref|ZP_07969452.1| ribosome-binding factor A [Synechococcus sp. CB0205]
Length = 136
Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats.
Identities = 25/118 (21%), Positives = 56/118 (47%), Gaps = 3/118 (2%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS 67
RR RV +R + +++ +D +S ++SI+ V ++ DL+ +++S+
Sbjct: 3 QGRRVERVAALIRREVSELLVTG-IKDERVSLGMVSITNVDVAGDLQHCKIFVSVYGSAE 61
Query: 68 -PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPV 124
+ + L +++G +GR L N+R PE+ F+ D ++ + L+ +
Sbjct: 62 VQQQALEGLRSASNYVKGELGRRL-NMRRTPEVIFQLDRGIEKGTSVLGLLNQLEEKR 118
>gi|184155210|ref|YP_001843550.1| ribosome-binding factor A [Lactobacillus fermentum IFO 3956]
gi|260662290|ref|ZP_05863186.1| ribosome-binding factor A [Lactobacillus fermentum 28-3-CHN]
gi|238692966|sp|B2GBN8|RBFA_LACF3 RecName: Full=Ribosome-binding factor A
gi|183226554|dbj|BAG27070.1| ribosome-binding factor A [Lactobacillus fermentum IFO 3956]
gi|260553673|gb|EEX26565.1| ribosome-binding factor A [Lactobacillus fermentum 28-3-CHN]
Length = 120
Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats.
Identities = 22/118 (18%), Positives = 58/118 (49%), Gaps = 6/118 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP-- 63
P R R+ ++++ + ++L +D ++ ++++ V ++ DL+ AT+Y ++
Sbjct: 2 PNKQFRVERLAQQIQREVDDILLKR-VRDPRVNG--VTVTGVDVTGDLQQATIYYTILSK 58
Query: 64 LDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
L ++ + L+ +R +G L + PE++F D S++ +++ L+
Sbjct: 59 LASDAEKTQTGLDKATGLVRSELGSRLNIFK-APEIKFVRDPSIEYGSRIDELLNELH 115
>gi|319793513|ref|YP_004155153.1| ribosome-binding factor a [Variovorax paradoxus EPS]
gi|315595976|gb|ADU37042.1| ribosome-binding factor A [Variovorax paradoxus EPS]
Length = 123
Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats.
Identities = 30/128 (23%), Positives = 57/128 (44%), Gaps = 5/128 (3%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
M + RA +V ++++ L +I E +D + +++I V ++ D A VY
Sbjct: 1 MPKRKAAAPNRAFKVADQIQRDLTELIAR-ELKDPRVG--MVTIQAVEVTPDYAHAKVYF 57
Query: 61 SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
SL ALN F+R + + L ++ VP L F +D + + +NAL+
Sbjct: 58 SLLTG-DVAETTEALNQAAGFLRNGLFKRL-HIHTVPTLHFLFDRTTERAADMNALIAQA 115
Query: 121 KIPVALEK 128
+ ++
Sbjct: 116 VASRSKDE 123
>gi|160932910|ref|ZP_02080299.1| hypothetical protein CLOLEP_01751 [Clostridium leptum DSM 753]
gi|156867984|gb|EDO61356.1| hypothetical protein CLOLEP_01751 [Clostridium leptum DSM 753]
Length = 113
Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats.
Identities = 28/114 (24%), Positives = 54/114 (47%), Gaps = 4/114 (3%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
S R R E+++ L ++ E +D + ++S+ V ++ DL VY+S +
Sbjct: 3 SHRIDRTTEDIKRELTAIL--RELKDPRVQETMLSVVRVEVTNDLSYCKVYVSSMEGMDH 60
Query: 69 -DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
R + L FIR +G + ++R+VP L+F+ S++ + L+ K
Sbjct: 61 AKRAVEGLKSAAGFIRRELGARI-HIRHVPSLQFQATDSIEYSANIAKLLNDLK 113
>gi|329962338|ref|ZP_08300343.1| ribosome-binding factor A [Bacteroides fluxus YIT 12057]
gi|328530199|gb|EGF57080.1| ribosome-binding factor A [Bacteroides fluxus YIT 12057]
Length = 110
Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats.
Identities = 32/112 (28%), Positives = 59/112 (52%), Gaps = 4/112 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
+ R ++ ++ L + L Q + + ++S+S V +S D+ VA Y+S+
Sbjct: 1 METTRQNKIARLLQKELSEIFL---LQAKSMPGVLVSVSAVRISPDMSVARAYLSIFPSE 57
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRN-LRYVPELRFRYDTSLQSYWKLNALM 117
+ +I +N N+K +R +G +R+ LR VPEL+F D SL K++ L+
Sbjct: 58 KGEEMIKNINANMKSVRYELGTRVRHQLRIVPELKFFVDDSLDYLEKIDELL 109
>gi|293115580|ref|ZP_06604543.1| ribosome-binding factor A [Butyrivibrio crossotus DSM 2876]
gi|292808920|gb|EFF68125.1| ribosome-binding factor A [Butyrivibrio crossotus DSM 2876]
Length = 112
Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats.
Identities = 31/107 (28%), Positives = 53/107 (49%), Gaps = 4/107 (3%)
Query: 12 ALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS-PDR 70
RV EV L +I +E +D I+ + S+ V ++ DL+ YIS+ D D
Sbjct: 1 MTRVNNEVLRELSNII-RSEIKDPRINP-MTSVVAVDVAPDLKTCKAYISVLGDKDSQDS 58
Query: 71 VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
I+ L +IR + +++ NLR PE+ F D S++ ++ L+
Sbjct: 59 TITGLKSAASYIRTLLAKTV-NLRNTPEITFILDQSIEYGVNMSRLI 104
>gi|239947275|ref|ZP_04699028.1| ribosome-binding factor A [Rickettsia endosymbiont of Ixodes
scapularis]
gi|239921551|gb|EER21575.1| ribosome-binding factor A [Rickettsia endosymbiont of Ixodes
scapularis]
Length = 122
Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 58/118 (49%), Gaps = 2/118 (1%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
MK NS R ++ + AL+ ++ + D + ++I++V ++ DL++A Y
Sbjct: 1 MKKLTKTNSYRQQKLASIINEALIEILRRGKMLDSRLFDCPLTITKVIVTADLKIANCYF 60
Query: 61 SLPLDV-SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ D ++ ALN + IR I + N+++ P++RF YD + K+ L+
Sbjct: 61 LPFNTKLTIDEIMDALNNSKNAIRNFITNKI-NIKFSPDIRFHYDYGFDNAIKVEELL 117
>gi|227529110|ref|ZP_03959159.1| ribosome-binding factor A [Lactobacillus vaginalis ATCC 49540]
gi|227350954|gb|EEJ41245.1| ribosome-binding factor A [Lactobacillus vaginalis ATCC 49540]
Length = 121
Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 57/120 (47%), Gaps = 6/120 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
P R R+ +E++ + ++L +D + ++I+ V ++ DL+ AT+Y S+ D
Sbjct: 2 PNKQYRVDRLAQEIQREVDDILLKR-VRDPRVQG--VTITGVDVTGDLQQATIYYSILSD 58
Query: 66 V--SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIP 123
++V + L+ IR +G L + PE++F D S+ +++ L+
Sbjct: 59 KASDMEKVQAGLDKATGLIRSELGARLNIFK-TPEIKFERDKSIAYGSRIDQLINKLHQQ 117
>gi|154506280|ref|ZP_02043018.1| hypothetical protein RUMGNA_03822 [Ruminococcus gnavus ATCC 29149]
gi|153793419|gb|EDN75839.1| hypothetical protein RUMGNA_03822 [Ruminococcus gnavus ATCC 29149]
Length = 123
Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats.
Identities = 29/114 (25%), Positives = 55/114 (48%), Gaps = 4/114 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
KNS + R+ EV+ L ++ +D ++ + S+ V ++ DL+ YIS+ D
Sbjct: 3 KNSIKNTRINTEVQRELSNIL-RGGIKDPRVAP-MTSVVAVEVAPDLKTCKAYISVLGDK 60
Query: 67 S-PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ I+ L +IR + R++ N+R PE+RF D S++ + +
Sbjct: 61 KAQEDTITGLQSAEGYIRRELARTI-NMRNTPEIRFIMDQSIEYGVNMTKKIND 113
>gi|88797624|ref|ZP_01113213.1| ribosome-binding factor A [Reinekea sp. MED297]
gi|88779796|gb|EAR10982.1| ribosome-binding factor A [Reinekea sp. MED297]
Length = 137
Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 62/122 (50%), Gaps = 14/122 (11%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP-- 63
NS R ++G++++ L VI+ E +D + +++I++V +S DL A VY +
Sbjct: 2 ASNSSRIRKIGDQIQKDLS-VIIQREVKDPRVG--MVTINDVKVSSDLSYADVYFTCMAF 58
Query: 64 --------LDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNA 115
+ LN F+R ++ + L+ LR +P+LRF YD +++ +++
Sbjct: 59 GPQSEAEAQEQERKEQEKLLNRAAGFMRTQLAQGLK-LRVIPQLRFHYDVVIETGARVSQ 117
Query: 116 LM 117
L+
Sbjct: 118 LI 119
>gi|257457664|ref|ZP_05622831.1| ribosome-binding factor A [Treponema vincentii ATCC 35580]
gi|257445050|gb|EEV20126.1| ribosome-binding factor A [Treponema vincentii ATCC 35580]
Length = 125
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 27/116 (23%), Positives = 55/116 (47%), Gaps = 3/116 (2%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP-D 69
R ++ E++R + +I + + +D +S +SI+ V +S DL A VY+S +D
Sbjct: 5 RLDKLAEQIREEISQLIFSGKIKDPRVSN-FLSINRVEVSGDLAYAKVYVSSFMDAHKTK 63
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
+ + L FIR + + L ++ P+ F YD S++ + + + +
Sbjct: 64 QGVRGLENAAGFIRTSLAKKL-HIHQCPQFTFIYDESIEEGFNMVKKLEALEAESD 118
>gi|221134840|ref|ZP_03561143.1| ribosome-binding factor A [Glaciecola sp. HTCC2999]
Length = 144
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 27/124 (21%), Positives = 57/124 (45%), Gaps = 6/124 (4%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP-- 63
+ R RV ++V + ++ EF+ + ++++S V +S DL A VY++
Sbjct: 2 AREFSRTDRVSQQVHKEIASILNQ-EFKHQAPELCMVTVSGVEISRDLAHAKVYVTFLEM 60
Query: 64 LDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIP 123
+ ++ L F+RG + R +R +R P L+F D S+ +++ ++ +
Sbjct: 61 DEEKVKASMALLEEGKGFVRGLLSRRVR-MRNTPALKFIQDRSITEGMRISNIVSQ--VT 117
Query: 124 VALE 127
E
Sbjct: 118 RDEE 121
>gi|255994866|ref|ZP_05428001.1| MgpA protein [Eubacterium saphenum ATCC 49989]
gi|255993579|gb|EEU03668.1| MgpA protein [Eubacterium saphenum ATCC 49989]
Length = 458
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 34/115 (29%), Positives = 58/115 (50%), Gaps = 3/115 (2%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPD 69
+R R+ EE++ + L + +D ++ + I+I+ V +S D R A VY + D
Sbjct: 5 KRKDRLAEEIKKIVSNAFL-LKVRDPIL-KMAINITAVDVSPDGRNAKVYYVVFSGSDKD 62
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPV 124
V +AL IR I ++R +RYVP + F YDTSL+ + +++ K
Sbjct: 63 EVAAALKKVEPLIRKEIAENMR-VRYVPNICFAYDTSLEYSRHIESILHDIKDKR 116
>gi|169334796|ref|ZP_02861989.1| hypothetical protein ANASTE_01202 [Anaerofustis stercorihominis DSM
17244]
gi|169257534|gb|EDS71500.1| hypothetical protein ANASTE_01202 [Anaerofustis stercorihominis DSM
17244]
Length = 121
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 31/116 (26%), Positives = 54/116 (46%), Gaps = 3/116 (2%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD-VSPD 69
R RV E +++ L + + E D + +IS+ V + DL+ A VY+S+ + +
Sbjct: 4 RIERVNELIKNELSLL-IELELNDPRLKEAIISVVRVKATPDLKYAKVYVSVMGENNKKE 62
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
+I L+ F+R I + + N R PEL F D SL ++ ++ I
Sbjct: 63 EIIGVLDKAKGFLRKSIAK-VLNTRNTPELIFELDNSLDYAMHIDEVLAGLDIKDD 117
>gi|324119534|gb|EGC13416.1| ribosome-binding proteinA [Escherichia coli E1167]
Length = 100
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 33/92 (35%), Positives = 48/92 (52%), Gaps = 5/92 (5%)
Query: 40 DVISISEVCMSVDLRVATVYISLPLDVSPDRV---ISALNCNIKFIRGRIGRSLRNLRYV 96
+ ++S V MS DL A VY++ D D V I AL FIR +G+++R LR V
Sbjct: 1 MMTTVSGVEMSRDLAYAKVYVTFLNDKDEDAVKAGIKALQEASGFIRSLLGKAMR-LRIV 59
Query: 97 PELRFRYDTSLQSYWKLNALMCLPKIPVALEK 128
PEL F YD SL +++ L+ + E+
Sbjct: 60 PELTFFYDNSLVEGMRMSNLVTS-VVKHDEER 90
>gi|146319499|ref|YP_001199211.1| ribosome-binding factor A [Streptococcus suis 05ZYH33]
gi|146321694|ref|YP_001201405.1| ribosome-binding factor A [Streptococcus suis 98HAH33]
gi|145690305|gb|ABP90811.1| Ribosome-binding factor A [Streptococcus suis 05ZYH33]
gi|145692500|gb|ABP93005.1| Ribosome-binding factor A [Streptococcus suis 98HAH33]
gi|292559117|gb|ADE32118.1| ribosome-binding factor A [Streptococcus suis GZ1]
Length = 136
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 57/119 (47%), Gaps = 6/119 (5%)
Query: 2 KNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS 61
K KN N R RVG E++ + ++ + +D + ++I++V M DL A VY +
Sbjct: 16 KGKNMANHFRTDRVGMEIKREVNEIL-QKKVRDPRVQG--VTITDVQMVGDLSTAKVYYT 72
Query: 62 LPLD--VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ + + + L I+ +GR L L +P+L F D S++ K++ ++
Sbjct: 73 IMSNLASDNQKAQTGLEKATGTIKRELGRKL-TLYKIPDLVFEKDQSIEYGNKIDQMLR 130
>gi|307288425|ref|ZP_07568413.1| ribosome-binding factor A [Enterococcus faecalis TX0109]
gi|306500596|gb|EFM69925.1| ribosome-binding factor A [Enterococcus faecalis TX0109]
gi|315165489|gb|EFU09506.1| ribosome-binding factor A [Enterococcus faecalis TX1302]
Length = 116
Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats.
Identities = 30/110 (27%), Positives = 53/110 (48%), Gaps = 6/110 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD--VSP 68
R R+G+E+ + ++ +D + I+I++V ++ DL+ AT+Y SL D
Sbjct: 5 RDRRLGQEIMREVNDILNKR-IRDPRVQG--ITITDVRVTGDLQQATIYYSLLSDLASEQ 61
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ L+ IR +G+ L L PEL F D S+Q ++ L+
Sbjct: 62 QKAQQGLDKAKGLIRKELGQRL-TLYKTPELIFERDESVQYGNHIDELIR 110
>gi|323342025|ref|ZP_08082258.1| ribosome-binding factor A [Erysipelothrix rhusiopathiae ATCC 19414]
gi|322464450|gb|EFY09643.1| ribosome-binding factor A [Erysipelothrix rhusiopathiae ATCC 19414]
Length = 111
Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats.
Identities = 30/109 (27%), Positives = 53/109 (48%), Gaps = 4/109 (3%)
Query: 13 LRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVI 72
R+ ++ L VI N D + +SI+EV ++ D AT+Y+S D +
Sbjct: 6 ERIESIIKRELAPVIQNR-LNDPSLK--FVSITEVDVTNDFSFATIYVSFLEDSKKQPGM 62
Query: 73 SALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
ALN +R + ++L ++R PEL F+ D S + K++ ++ K
Sbjct: 63 DALNKAKGMLRSEVSKAL-SIRRTPELIFKLDESSEYGAKIDGILESLK 110
>gi|323144577|ref|ZP_08079166.1| ribosome-binding factor A [Succinatimonas hippei YIT 12066]
gi|322415653|gb|EFY06398.1| ribosome-binding factor A [Succinatimonas hippei YIT 12066]
Length = 119
Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats.
Identities = 32/115 (27%), Positives = 56/115 (48%), Gaps = 6/115 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
PK+ R RV + V+ + +D + +++EV ++ DLR A +++S +
Sbjct: 2 PKSFGRNERVASAILREAADVLH-HSVKDPRVKSA--TVTEVSVNSDLRDARIFVSFLTN 58
Query: 66 VSP--DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ LN FIR + L+ LRY+PE+ F +D+ L KL+AL+
Sbjct: 59 DEQAVKEAMEGLNKAKGFIRSELASRLK-LRYMPEIHFIFDSLLSESMKLDALIA 112
>gi|259503129|ref|ZP_05746031.1| ribosome-binding factor A [Lactobacillus antri DSM 16041]
gi|259168995|gb|EEW53490.1| ribosome-binding factor A [Lactobacillus antri DSM 16041]
Length = 119
Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats.
Identities = 26/118 (22%), Positives = 57/118 (48%), Gaps = 6/118 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
P R R+ ++++ + ++L +D + ++I+ V ++ DL+ AT+Y S+ D
Sbjct: 2 PNKQYRVDRLAQQIQREVDDILLKR-VRDPRVQG--VTITGVDVTGDLQQATIYYSILSD 58
Query: 66 V--SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
++V + L+ IR +G L + PE++F D S+ +++ L+
Sbjct: 59 KASDLEKVQAGLDKATGLIRSELGARLNIFK-TPEIKFERDKSVAYGSRIDQLINQLH 115
>gi|291460008|ref|ZP_06599398.1| ribosome-binding factor A [Oribacterium sp. oral taxon 078 str.
F0262]
gi|291417349|gb|EFE91068.1| ribosome-binding factor A [Oribacterium sp. oral taxon 078 str.
F0262]
Length = 139
Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats.
Identities = 35/114 (30%), Positives = 60/114 (52%), Gaps = 4/114 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
K S + R E+VR L +++ +E +D +S + +I+ V ++ DL+ VY+S
Sbjct: 3 KQSFKYQRRNEDVRRQLS-LLVRDELKDARVSP-MTNITGVDLTPDLQYCKVYVSALGGE 60
Query: 67 SP-DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
D+ + L F+R + RSL NLR+ PEL F D S + +++AL+
Sbjct: 61 EVLDKTMEGLRAASGFLRRELARSL-NLRHTPELSFVADRSAEYGSRMDALIRR 113
>gi|15672750|ref|NP_266924.1| ribosome-binding factor A [Lactococcus lactis subsp. lactis Il1403]
gi|281491264|ref|YP_003353244.1| ribosome-binding factor A [Lactococcus lactis subsp. lactis KF147]
gi|13878682|sp|Q9CHG3|RBFA_LACLA RecName: Full=Ribosome-binding factor A
gi|12723686|gb|AAK04866.1|AE006310_8 ribosome-binding factor A [Lactococcus lactis subsp. lactis Il1403]
gi|281375005|gb|ADA64523.1| Ribosome-binding factor A [Lactococcus lactis subsp. lactis KF147]
Length = 119
Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats.
Identities = 27/114 (23%), Positives = 58/114 (50%), Gaps = 6/114 (5%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD- 65
NS R+ RV E++ + ++ N+ +D + ++I++V ++ DL ATVY SL +
Sbjct: 2 GNSFRSDRVAVEIQREINDIL-RNKVRDPRVQD--VNITDVQLTGDLSQATVYYSLLSNL 58
Query: 66 -VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
++ +AL + + + + + +P+L F D S++ K++ L+
Sbjct: 59 ASDNEKAATALKKATGLFKSELAKRMTIFK-IPDLTFAKDESVEYGSKIDELLR 111
>gi|158320561|ref|YP_001513068.1| ribosome-binding factor A [Alkaliphilus oremlandii OhILAs]
gi|166918672|sp|A8MFA9|RBFA_ALKOO RecName: Full=Ribosome-binding factor A
gi|158140760|gb|ABW19072.1| ribosome-binding factor A [Alkaliphilus oremlandii OhILAs]
Length = 132
Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats.
Identities = 32/109 (29%), Positives = 55/109 (50%), Gaps = 4/109 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV-SPD 69
R R+ EE++ + I NE +D IS + SI EV ++ DLR +Y+S+ +
Sbjct: 5 RVKRLSEEIKKIVSDSI-RNELRDPRISS-MTSIVEVDVTRDLRYVNIYVSVLGNEKEKA 62
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ L FIR IG+ ++ RY PE+ F+ D S++ + ++
Sbjct: 63 DTMEGLTKASGFIRREIGKKIKA-RYTPEVIFKLDESIEKGIYMYNVIT 110
>gi|312869024|ref|ZP_07729201.1| ribosome-binding factor A [Lactobacillus oris PB013-T2-3]
gi|311095450|gb|EFQ53717.1| ribosome-binding factor A [Lactobacillus oris PB013-T2-3]
Length = 119
Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats.
Identities = 26/118 (22%), Positives = 57/118 (48%), Gaps = 6/118 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
P R R+ ++++ + ++L +D + ++I+ V ++ DL+ AT+Y S+ D
Sbjct: 2 PNKQYRVDRLAQQIQREVDDILLKR-VRDPRVQG--VTITGVDVTGDLQQATIYYSILSD 58
Query: 66 V--SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
++V + L+ IR +G L + PE++F D S+ +++ L+
Sbjct: 59 KASEMEKVQAGLDKATGLIRSELGARLNIFK-TPEIKFERDKSVAYGSRIDQLINQLH 115
>gi|227514700|ref|ZP_03944749.1| ribosome-binding factor A [Lactobacillus fermentum ATCC 14931]
gi|227086904|gb|EEI22216.1| ribosome-binding factor A [Lactobacillus fermentum ATCC 14931]
Length = 120
Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats.
Identities = 21/113 (18%), Positives = 57/113 (50%), Gaps = 6/113 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP--LDVSP 68
R R+ ++++ + ++L +D ++ ++++ V ++ DL+ AT+Y ++ L
Sbjct: 7 RVERLAQQIQREVDDILLKR-VRDPRVNG--VTVTGVDVTGDLQQATIYYTILSKLASDA 63
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
++ + L+ +R +G L + PE++F D S++ +++ L+
Sbjct: 64 EKTQTGLDKATGLVRSELGSRLNIFK-APEIKFVRDPSIEYGSRIDELLNELH 115
>gi|296125371|ref|YP_003632623.1| ribosome-binding factor A [Brachyspira murdochii DSM 12563]
gi|296017187|gb|ADG70424.1| ribosome-binding factor A [Brachyspira murdochii DSM 12563]
Length = 122
Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats.
Identities = 35/119 (29%), Positives = 59/119 (49%), Gaps = 2/119 (1%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
+S R LRV E ++ L +I+ E +D I ++++I++V + DL+ A VY +
Sbjct: 1 MSSHRILRVNENIKQTLSLIIMR-EIEDPRIKNNLVTITKVDTAKDLKNAKVYFVCLNED 59
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
+ V++ LN I + + L +RYVP L F YD +L K+ + IP
Sbjct: 60 KKNEVLNGLNSAKGVIFSYLRKQL-TIRYVPNLTFHYDKNLIETNKVLTDIKNLTIPEE 117
>gi|72383316|ref|YP_292671.1| ribosome-binding factor A [Prochlorococcus marinus str. NATL2A]
gi|123620526|sp|Q46HR0|RBFA_PROMT RecName: Full=Ribosome-binding factor A
gi|72003166|gb|AAZ58968.1| ribosome-binding factor A [Prochlorococcus marinus str. NATL2A]
Length = 123
Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 59/118 (50%), Gaps = 3/118 (2%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV- 66
NSRR ++ ++ + +++N +D I + +I+I+ V +S DL+ A ++ISL +
Sbjct: 3 NSRRVEKLAALLKREVSELLVNG-IRDERIHQAMITITSVEVSGDLQHAKIFISLFGEEK 61
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPV 124
D V+ L FIR + + L +R PEL F+ D + + L+ ++
Sbjct: 62 KKDEVLVGLEEAKGFIRAELAQRL-QMRRSPELVFKIDKGMTKGPAVLDLLNALELER 118
>gi|290581064|ref|YP_003485456.1| ribosome binding factor A [Streptococcus mutans NN2025]
gi|254997963|dbj|BAH88564.1| ribosome binding factor A [Streptococcus mutans NN2025]
Length = 117
Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 59/117 (50%), Gaps = 6/117 (5%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD- 65
++ R RVG E++ + ++ + +D + ++I++V MS DL +A VY ++ D
Sbjct: 1 MSNHRIERVGMEIKREVNEIL-QKKVRDPRVQG--VTITDVQMSGDLSLAKVYYTIMSDL 57
Query: 66 -VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+V L I+ +G++L + +P+L F D S++ K++ ++ +
Sbjct: 58 ASDNQKVQIGLEKAKGTIKRELGKNL-TMYKIPDLTFIKDESIEYGNKIDQMLRDLE 113
>gi|284928793|ref|YP_003421315.1| ribosome-binding factor A [cyanobacterium UCYN-A]
gi|284809252|gb|ADB94957.1| ribosome-binding factor A [cyanobacterium UCYN-A]
Length = 128
Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats.
Identities = 25/115 (21%), Positives = 57/115 (49%), Gaps = 3/115 (2%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS 67
NSRR R+ ++ + ++L + +D + +ISI+ V +S DL+ +++S+
Sbjct: 3 NSRRVSRISSLIKREISNMLLF-DIKDDRVGAGMISITNVDLSGDLQHVKIFVSIYGTEE 61
Query: 68 PD-RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+ L + ++R + + +R LR P+++F D ++ ++ L+ K
Sbjct: 62 VQFETMQGLKSSEGYVRKELAQRIR-LRRAPDVKFFQDYGIEKGNEMLYLLSELK 115
>gi|313156820|gb|EFR56260.1| ribosome-binding factor A [Alistipes sp. HGB5]
Length = 113
Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats.
Identities = 23/115 (20%), Positives = 57/115 (49%), Gaps = 3/115 (2%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
+ R ++ ++++ + + + ++ +++++ V +S D A +Y+S+
Sbjct: 1 METTRQQKIAKQIQKDVAEIFQKEG--EGIVRGSLVTVTAVRVSPDFGYAKIYVSVFPFG 58
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRN-LRYVPELRFRYDTSLQSYWKLNALMCLP 120
++ L+ N KFIR +G+ +RN ++ VPE++F D SL+ + +
Sbjct: 59 RSAALMQELDRNNKFIRHALGQRIRNQVKNVPEIQFFLDDSLEYIDHIEQALKND 113
>gi|118498221|ref|YP_899271.1| ribosome-binding factor A [Francisella tularensis subsp. novicida
U112]
gi|194324405|ref|ZP_03058178.1| ribosome-binding factor A [Francisella tularensis subsp. novicida
FTE]
gi|208780248|ref|ZP_03247590.1| ribosome-binding factor A [Francisella novicida FTG]
gi|254373564|ref|ZP_04989051.1| ribosome-binding factor A [Francisella tularensis subsp. novicida
GA99-3549]
gi|254375029|ref|ZP_04990509.1| ribosome-binding factor A [Francisella novicida GA99-3548]
gi|166218439|sp|A0Q8F2|RBFA_FRATN RecName: Full=Ribosome-binding factor A
gi|118424127|gb|ABK90517.1| ribosome-binding factor A [Francisella novicida U112]
gi|151571289|gb|EDN36943.1| ribosome-binding factor A [Francisella novicida GA99-3549]
gi|151572747|gb|EDN38401.1| ribosome-binding factor A [Francisella novicida GA99-3548]
gi|194321470|gb|EDX18955.1| ribosome-binding factor A [Francisella tularensis subsp. novicida
FTE]
gi|208743897|gb|EDZ90199.1| ribosome-binding factor A [Francisella novicida FTG]
gi|332678957|gb|AEE88086.1| Ribosome-binding factor A [Francisella cf. novicida Fx1]
Length = 143
Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats.
Identities = 36/117 (30%), Positives = 57/117 (48%), Gaps = 9/117 (7%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
R RV E++ + ++L +D ++ +I+EV +S DL A +Y + +
Sbjct: 6 RVQRVASELQKVIS-LLLRTRIKDAKLASA--TITEVDLSKDLSYAKIYYTCLAIEDAEY 62
Query: 71 VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALE 127
+ A + F R I +SL +LR VP L+F YDTSL ++ KI ALE
Sbjct: 63 IDKAFEKSKGFFRSSIAKSL-SLRIVPNLKFIYDTSLDYGMQMEE-----KIQQALE 113
>gi|332184776|gb|AEE27030.1| Ribosome-binding factor A [Francisella cf. novicida 3523]
Length = 143
Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats.
Identities = 36/117 (30%), Positives = 57/117 (48%), Gaps = 9/117 (7%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
R RV E++ + ++L +D ++ +I+EV +S DL A +Y + +
Sbjct: 6 RVQRVASELQKVIS-LLLRTRIKDAKLASA--TITEVDLSKDLSYAKIYYTCLAVEDAEY 62
Query: 71 VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALE 127
+ A + F R I +SL +LR VP L+F YDTSL ++ KI ALE
Sbjct: 63 IDKAFEKSKGFFRSSIAKSL-SLRIVPNLKFIYDTSLDYGMQMEE-----KIQQALE 113
>gi|148241380|ref|YP_001226537.1| ribosome-binding factor A [Synechococcus sp. RCC307]
gi|166219414|sp|A5GQM5|RBFA_SYNR3 RecName: Full=Ribosome-binding factor A
gi|147849690|emb|CAK27184.1| Ribosome-binding factor A [Synechococcus sp. RCC307]
Length = 131
Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats.
Identities = 29/113 (25%), Positives = 58/113 (51%), Gaps = 3/113 (2%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV-SP 68
RR RV +R + +++N +D +++ ++SI+ V ++ DL+ V +S+
Sbjct: 5 RRVERVASMIRREMSELLVNG-VRDERVNQGMVSITNVVVAGDLQHCKVSVSIFGSESEQ 63
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
D+ ++ L ++RG + R L N+R PEL F +D L ++ L+ +
Sbjct: 64 DQAMAGLRSAAPYLRGELSRRL-NMRRTPELVFHHDKGLAQGVEVLGLLSKLE 115
>gi|327404009|ref|YP_004344847.1| ribosome-binding factor A [Fluviicola taffensis DSM 16823]
gi|327319517|gb|AEA44009.1| ribosome-binding factor A [Fluviicola taffensis DSM 16823]
Length = 111
Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 30/113 (26%), Positives = 55/113 (48%), Gaps = 2/113 (1%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
+S R R+ ++ L N + + ++S++ V ++ DL +A +Y+S+ +
Sbjct: 1 MSSIRQNRIEGVIQEELATYFQRNTQE--ICLGAMVSVTIVRVTSDLSLARIYLSVFMGP 58
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
V+ + N K IRG +G L+N+ +PEL F D SL +N L+
Sbjct: 59 DKQEVLKNIQVNSKKIRGEVGNRLKNMHKIPELLFYIDDSLDYAETINKLLKD 111
>gi|153855234|ref|ZP_01996400.1| hypothetical protein DORLON_02414 [Dorea longicatena DSM 13814]
gi|149752233|gb|EDM62164.1| hypothetical protein DORLON_02414 [Dorea longicatena DSM 13814]
Length = 128
Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 56/121 (46%), Gaps = 6/121 (4%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
K S + RV EV+ L +I +D ++ S+ ++ DL+ YIS+ D
Sbjct: 3 KRSIKNTRVNTEVQHELSNII-RGGLKDPRVAP-WTSVVAAEVAPDLKTCKAYISVLGDA 60
Query: 67 -SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
++ I L +IR + R+L NLR PE++F D S++ ++ + ++
Sbjct: 61 YEQEQTIKGLQSAEGYIRRELARTL-NLRNTPEIKFVLDQSIEYGVNMSK--KIDEVTKD 117
Query: 126 L 126
L
Sbjct: 118 L 118
>gi|227890637|ref|ZP_04008442.1| ribosome-binding factor A [Lactobacillus salivarius ATCC 11741]
gi|227867575|gb|EEJ74996.1| ribosome-binding factor A [Lactobacillus salivarius ATCC 11741]
Length = 119
Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 30/110 (27%), Positives = 58/110 (52%), Gaps = 6/110 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
R R+ +E++ + ++L +D + ++I+ V +S DL+ AT+Y S+ D + D
Sbjct: 6 RVGRLSQEIQREVNDILLKR-VRDPRVKD--VTITGVEVSGDLQHATIYYSILSDKASDE 62
Query: 71 --VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
V + L+ IRG +G L ++ PE++F D S+Q ++ L+
Sbjct: 63 KKVQTGLDKATSLIRGELGHRL-SIYVTPEIKFERDKSVQYGDHIDELLR 111
>gi|167756912|ref|ZP_02429039.1| hypothetical protein CLORAM_02461 [Clostridium ramosum DSM 1402]
gi|237734620|ref|ZP_04565101.1| ribosome-binding factor A [Mollicutes bacterium D7]
gi|167703087|gb|EDS17666.1| hypothetical protein CLORAM_02461 [Clostridium ramosum DSM 1402]
gi|229382440|gb|EEO32531.1| ribosome-binding factor A [Coprobacillus sp. D7]
Length = 115
Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 31/108 (28%), Positives = 53/108 (49%), Gaps = 5/108 (4%)
Query: 13 LRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-DVSPDRV 71
++ ++ L +I E +D I +I+ V + DL +A VY++ D +
Sbjct: 6 DKMNGIIQRELSQII-QVEVRDPKIG--FCTITAVDTTTDLSIAKVYVTFLGKDFDTRKG 62
Query: 72 ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ ALN + FIR + + L +R VPEL F DTSL+ K+ ++
Sbjct: 63 MEALNRSKGFIRSLLAKRL-TIRKVPELIFVNDTSLEYGNKIEKIIDD 109
>gi|118579400|ref|YP_900650.1| ribosome-binding factor A [Pelobacter propionicus DSM 2379]
gi|166219384|sp|A1AMM2|RBFA_PELPD RecName: Full=Ribosome-binding factor A
gi|118502110|gb|ABK98592.1| ribosome-binding factor A [Pelobacter propionicus DSM 2379]
Length = 122
Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 23/118 (19%), Positives = 56/118 (47%), Gaps = 5/118 (4%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS- 67
S+R+ ++ E + + ++ D I ++++ V + DL +A +Y + D
Sbjct: 2 SKRSEKLAETIHETISSILSRG-LNDPRIG--FVTLTAVDVVEDLSIARIYFTAIGDRDA 58
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
+ LN ++R +G+ + +R++PEL F+YD S + ++++++
Sbjct: 59 RKNSEAGLNSAKGYLRRELGK-VLTIRHIPELIFKYDESQEYGNRIDSILREIATEHD 115
>gi|328944972|gb|EGG39129.1| ribosome-binding factor A [Streptococcus sanguinis SK1087]
Length = 133
Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats.
Identities = 25/114 (21%), Positives = 57/114 (50%), Gaps = 6/114 (5%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD-- 65
N+ R RVG E++ + ++ + +D + ++I++V M DL +A VY ++ +
Sbjct: 3 NNFRTDRVGMEIKREVNEIL-QKKVRDPRVQG--VTITDVQMLGDLSMAKVYYTIMSNLA 59
Query: 66 VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ + L I+ +G +L+ + +P+L F D S++ K++ ++
Sbjct: 60 SDNQKAQTGLEKATGTIKRELGHNLK-MYKIPDLTFVKDESIEYGNKIDQMLRD 112
>gi|255543903|ref|XP_002513014.1| Ribosome-binding factor A, putative [Ricinus communis]
gi|223548025|gb|EEF49517.1| Ribosome-binding factor A, putative [Ricinus communis]
Length = 221
Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats.
Identities = 35/125 (28%), Positives = 64/125 (51%), Gaps = 15/125 (12%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQ------------DRLISRDVISISEVCMSVDLRVAT 57
RR V ++++ L ++L ++ D+ +S + +IS+V +S DL+V
Sbjct: 61 RRVKMVAKQIQRELSDMLLTDKVLQYAILPEAALGADKYLSS-LTTISDVEVSTDLQVVK 119
Query: 58 VYISLPLDVSPDRV-ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNAL 116
VY+S+ D V I+ L K++R +GR ++ LR PE+RF D S + ++ A+
Sbjct: 120 VYVSVFGDDRGKEVAIAGLKAKAKYVRSELGRRMK-LRLTPEIRFIEDESFERGSRVLAI 178
Query: 117 MCLPK 121
+ K
Sbjct: 179 LDKIK 183
>gi|227510257|ref|ZP_03940306.1| ribosome-binding factor A [Lactobacillus brevis subsp. gravesensis
ATCC 27305]
gi|227524401|ref|ZP_03954450.1| ribosome-binding factor A [Lactobacillus hilgardii ATCC 8290]
gi|227088632|gb|EEI23944.1| ribosome-binding factor A [Lactobacillus hilgardii ATCC 8290]
gi|227189909|gb|EEI69976.1| ribosome-binding factor A [Lactobacillus brevis subsp. gravesensis
ATCC 27305]
Length = 116
Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats.
Identities = 30/113 (26%), Positives = 56/113 (49%), Gaps = 6/113 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
R R+ +E++ + ++L +D + ++++ V ++ DL+ AT+Y S+ D D
Sbjct: 5 RVGRLEQEIQREVNDILLKR-VRDPRVQG--VTLTGVEVTGDLQQATIYYSILSDDKADE 61
Query: 71 --VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
L IRG +G L + PE++F DTS+Q K++ L+ K
Sbjct: 62 ETTAKGLEKATGLIRGELGSRLSIYK-TPEIKFELDTSVQYGDKIDRLINKLK 113
>gi|56707230|ref|YP_169126.1| ribosome-binding factor A [Francisella tularensis subsp. tularensis
SCHU S4]
gi|89257071|ref|YP_514433.1| ribosome-binding factor A [Francisella tularensis subsp. holarctica
LVS]
gi|110669700|ref|YP_666257.1| ribosome-binding factor A [Francisella tularensis subsp. tularensis
FSC198]
gi|115315427|ref|YP_764150.1| ribosome-binding factor A [Francisella tularensis subsp. holarctica
OSU18]
gi|134301265|ref|YP_001121233.1| ribosome-binding factor A [Francisella tularensis subsp. tularensis
WY96-3418]
gi|156503281|ref|YP_001429346.1| ribosome-binding factor A [Francisella tularensis subsp. holarctica
FTNF002-00]
gi|167009458|ref|ZP_02274389.1| ribosome-binding factor A [Francisella tularensis subsp. holarctica
FSC200]
gi|187931007|ref|YP_001890991.1| ribosome-binding factor A [Francisella tularensis subsp.
mediasiatica FSC147]
gi|224456291|ref|ZP_03664764.1| ribosome-binding factor A [Francisella tularensis subsp. tularensis
MA00-2987]
gi|254368309|ref|ZP_04984328.1| ribosome binding factor A [Francisella tularensis subsp. holarctica
257]
gi|254369908|ref|ZP_04985917.1| ribosome-binding factor A [Francisella tularensis subsp. holarctica
FSC022]
gi|254369915|ref|ZP_04985923.1| ribosome-binding factor A [Francisella tularensis subsp. tularensis
FSC033]
gi|254874069|ref|ZP_05246779.1| ribosome-binding factor A [Francisella tularensis subsp. tularensis
MA00-2987]
gi|290954353|ref|ZP_06558974.1| ribosome-binding factor A [Francisella tularensis subsp. holarctica
URFT1]
gi|295312217|ref|ZP_06803017.1| ribosome-binding factor A [Francisella tularensis subsp. holarctica
URFT1]
gi|61214713|sp|Q5NIL6|RBFA_FRATT RecName: Full=Ribosome-binding factor A
gi|122324587|sp|Q0BK71|RBFA_FRATO RecName: Full=Ribosome-binding factor A
gi|122500221|sp|Q2A1G9|RBFA_FRATH RecName: Full=Ribosome-binding factor A
gi|123063628|sp|Q14K19|RBFA_FRAT1 RecName: Full=Ribosome-binding factor A
gi|166218438|sp|A7NEI7|RBFA_FRATF RecName: Full=Ribosome-binding factor A
gi|166218440|sp|A4IW11|RBFA_FRATW RecName: Full=Ribosome-binding factor A
gi|238691527|sp|B2SEW8|RBFA_FRATM RecName: Full=Ribosome-binding factor A
gi|54114151|gb|AAV29709.1| NT02FT1759 [synthetic construct]
gi|56603722|emb|CAG44684.1| Ribosome-binding factor A [Francisella tularensis subsp. tularensis
SCHU S4]
gi|89144902|emb|CAJ80247.1| Ribosome-binding factor A [Francisella tularensis subsp. holarctica
LVS]
gi|110320033|emb|CAL08067.1| Ribosome-binding factor A [Francisella tularensis subsp. tularensis
FSC198]
gi|115130326|gb|ABI83513.1| ribosome-binding factor A [Francisella tularensis subsp. holarctica
OSU18]
gi|134049042|gb|ABO46113.1| ribosome-binding factor A [Francisella tularensis subsp. tularensis
WY96-3418]
gi|134254118|gb|EBA53212.1| ribosome binding factor A [Francisella tularensis subsp. holarctica
257]
gi|151568161|gb|EDN33815.1| ribosome-binding factor A [Francisella tularensis subsp. tularensis
FSC033]
gi|156253884|gb|ABU62390.1| ribosome-binding factor A [Francisella tularensis subsp. holarctica
FTNF002-00]
gi|157122878|gb|EDO66995.1| ribosome-binding factor A [Francisella tularensis subsp. holarctica
FSC022]
gi|187711916|gb|ACD30213.1| ribosome-binding factor A [Francisella tularensis subsp.
mediasiatica FSC147]
gi|254840068|gb|EET18504.1| ribosome-binding factor A [Francisella tularensis subsp. tularensis
MA00-2987]
gi|282158338|gb|ADA77729.1| ribosome-binding factor A [Francisella tularensis subsp. tularensis
NE061598]
Length = 143
Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats.
Identities = 36/117 (30%), Positives = 56/117 (47%), Gaps = 9/117 (7%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
R RV E + + ++L +D ++ +I+EV +S DL A +Y + +
Sbjct: 6 RVQRVASEFQKVIS-LLLRTRIKDAKLASA--TITEVDLSKDLSYAKIYYTCLAIEDAEY 62
Query: 71 VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALE 127
+ A + F R I +SL +LR VP L+F YDTSL ++ KI ALE
Sbjct: 63 IDKAFEKSKGFFRSSIAKSL-SLRIVPNLKFIYDTSLDYGMQMEE-----KIQQALE 113
>gi|257453570|ref|ZP_05618860.1| ribosome-binding factor A [Enhydrobacter aerosaccus SK60]
gi|257449028|gb|EEV23981.1| ribosome-binding factor A [Enhydrobacter aerosaccus SK60]
Length = 129
Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 53/118 (44%), Gaps = 11/118 (9%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
++R R+ ++++ L V++ +E D + ++IS V +S DL A +Y+++
Sbjct: 2 NQRLQRLADQIQRDLA-VLIRDEINDPRL-TGFVTISSVKISPDLGYADIYVTIMEKSMD 59
Query: 69 D--------RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
D + LN F+R + L+ R P LRF YD + + L+
Sbjct: 60 DAMAKDYHTESLEVLNKASGFLRTELSHLLKT-RTTPRLRFHYDEVTANANYMMNLIS 116
>gi|116511577|ref|YP_808793.1| ribosome-binding factor A [Lactococcus lactis subsp. cremoris SK11]
gi|125624581|ref|YP_001033064.1| ribosome-binding factor A [Lactococcus lactis subsp. cremoris
MG1363]
gi|123320521|sp|Q030K1|RBFA_LACLS RecName: Full=Ribosome-binding factor A
gi|166218445|sp|A2RM36|RBFA_LACLM RecName: Full=Ribosome-binding factor A
gi|116107231|gb|ABJ72371.1| ribosome-binding factor A [Lactococcus lactis subsp. cremoris SK11]
gi|124493389|emb|CAL98363.1| Ribosome-binding factor A [Lactococcus lactis subsp. cremoris
MG1363]
gi|300071372|gb|ADJ60772.1| ribosome-binding factor A [Lactococcus lactis subsp. cremoris
NZ9000]
Length = 119
Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats.
Identities = 27/114 (23%), Positives = 58/114 (50%), Gaps = 6/114 (5%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD- 65
NS R+ RV E++ + ++ N+ +D + ++I++V ++ DL ATVY SL +
Sbjct: 2 GNSFRSDRVAVEIQREINDIL-RNKVRDPRVQD--VNITDVQLTGDLSQATVYYSLLSNL 58
Query: 66 -VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
++ +AL + + + + + +P+L F D S++ K++ L+
Sbjct: 59 ASDNEKAATALKKATGLFKSELAKRMTIFK-IPDLTFAKDESVEYGSKIDELLR 111
>gi|326406319|gb|ADZ63390.1| ribosome-binding factor A [Lactococcus lactis subsp. lactis CV56]
Length = 119
Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats.
Identities = 27/114 (23%), Positives = 57/114 (50%), Gaps = 6/114 (5%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD- 65
NS R RV E++ + ++ N+ +D + ++I++V ++ DL ATVY SL +
Sbjct: 2 GNSFRNDRVAVEIQREINDIL-RNKVRDPRVQD--VNITDVQLTGDLSQATVYYSLLSNL 58
Query: 66 -VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
++ +AL + + + + + +P+L F D S++ K++ L+
Sbjct: 59 ASDNEKAATALKKATGLFKSELAKRMTIFK-IPDLTFAKDESVEYGSKIDELLR 111
>gi|320537768|ref|ZP_08037691.1| ribosome-binding factor A [Treponema phagedenis F0421]
gi|320145391|gb|EFW37084.1| ribosome-binding factor A [Treponema phagedenis F0421]
Length = 125
Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 59/119 (49%), Gaps = 3/119 (2%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP-D 69
R ++GE++R + +I + +D +S +SI+ V +S DL A VY+S +D
Sbjct: 5 RLTKLGEQIREEISKMISSGTIKDPRVSN-FLSINRVDVSADLAYAKVYVSSFMDSHKTK 63
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALEK 128
+ +S L FIR + + L ++ P+L F YD S++ + + + I E+
Sbjct: 64 QGVSGLENAAGFIRTTLAKKLHVHKF-PQLSFIYDESIKEGFDMVKKLDSMDISPEEEQ 121
>gi|319944108|ref|ZP_08018386.1| ribosome-binding factor A [Lautropia mirabilis ATCC 51599]
gi|319742602|gb|EFV95011.1| ribosome-binding factor A [Lautropia mirabilis ATCC 51599]
Length = 156
Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats.
Identities = 28/116 (24%), Positives = 52/116 (44%), Gaps = 6/116 (5%)
Query: 14 RVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP--DRV 71
RV E + + +I E +D + +++++ V ++ D ATV+ S+ D
Sbjct: 2 RVTELLHQEIAELI-RTEVKDPRLG--LVTVTGVDLTPDYAHATVHFSVLPDDDERVAET 58
Query: 72 ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALE 127
+ L F+R +GR +R + PEL F +D S Q ++ L+ A +
Sbjct: 59 LRGLRAASGFLRSLVGRRVR-IHTTPELHFVHDASAQRGIEMGRLIDEANSRRAAD 113
>gi|239815727|ref|YP_002944637.1| ribosome-binding factor A [Variovorax paradoxus S110]
gi|259552123|sp|C5CLW4|RBFA_VARPS RecName: Full=Ribosome-binding factor A
gi|239802304|gb|ACS19371.1| ribosome-binding factor A [Variovorax paradoxus S110]
Length = 123
Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 54/119 (45%), Gaps = 5/119 (4%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
M + RA +V ++++ L +I E +D + +++I V ++ D A +Y
Sbjct: 1 MPKRKAAAPNRAFKVADQIQRDLTELIAR-ELKDPRVG--MVTIQAVEVTPDYAHAKIYF 57
Query: 61 SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
S+ ALN F+R + + L ++ VP L F +D + + +NAL+
Sbjct: 58 SMLTG-DVTETTEALNQAAGFLRNGLFKRL-HIHTVPTLHFLFDRTTERAADMNALIAQ 114
>gi|154485023|ref|ZP_02027471.1| hypothetical protein EUBVEN_02741 [Eubacterium ventriosum ATCC
27560]
gi|149733976|gb|EDM50095.1| hypothetical protein EUBVEN_02741 [Eubacterium ventriosum ATCC
27560]
Length = 92
Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Query: 41 VISISEVCMSVDLRVATVYISLPLDVS-PDRVISALNCNIKFIRGRIGRSLRNLRYVPEL 99
+ S++ V ++ DL+ VYIS+ D ++ L FIR + R++ NLR PEL
Sbjct: 1 MTSVTGVEVTPDLKFCKVYISVLGDEEAKADTMAGLKSAAGFIRRELARTV-NLRNTPEL 59
Query: 100 RFRYDTSLQSYWKLNALM 117
+F D S++ K++ L+
Sbjct: 60 KFVMDQSIEYGMKMSKLI 77
>gi|227551752|ref|ZP_03981801.1| ribosome-binding factor A [Enterococcus faecium TX1330]
gi|257887087|ref|ZP_05666740.1| ribosome-binding factor A [Enterococcus faecium 1,141,733]
gi|257895652|ref|ZP_05675305.1| ribosome-binding factor A [Enterococcus faecium Com12]
gi|257898242|ref|ZP_05677895.1| ribosome-binding factor A [Enterococcus faecium Com15]
gi|293377737|ref|ZP_06623926.1| ribosome-binding factor A [Enterococcus faecium PC4.1]
gi|293570609|ref|ZP_06681660.1| ribosome-binding factor A [Enterococcus faecium E980]
gi|227179057|gb|EEI60029.1| ribosome-binding factor A [Enterococcus faecium TX1330]
gi|257823141|gb|EEV50073.1| ribosome-binding factor A [Enterococcus faecium 1,141,733]
gi|257832217|gb|EEV58638.1| ribosome-binding factor A [Enterococcus faecium Com12]
gi|257836154|gb|EEV61228.1| ribosome-binding factor A [Enterococcus faecium Com15]
gi|291609280|gb|EFF38551.1| ribosome-binding factor A [Enterococcus faecium E980]
gi|292643737|gb|EFF61858.1| ribosome-binding factor A [Enterococcus faecium PC4.1]
Length = 115
Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats.
Identities = 27/111 (24%), Positives = 53/111 (47%), Gaps = 6/111 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD--VSP 68
R RVG+E+ + ++ + +D + ++I++V ++ DL+ AT+Y S+ D
Sbjct: 5 RDRRVGQEILKEVNAIL-RKKVRDPRVQD--VTITDVHVTGDLQQATIYYSILSDLASEK 61
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ L+ IR +G +L + PEL F D S+ ++ L+
Sbjct: 62 KKAQEGLDKASGLIRRELGHNLSIYK-TPELSFELDESVVYGNHIDELLRD 111
>gi|317121858|ref|YP_004101861.1| ribosome-binding factor A [Thermaerobacter marianensis DSM 12885]
gi|315591838|gb|ADU51134.1| ribosome-binding factor A [Thermaerobacter marianensis DSM 12885]
Length = 177
Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats.
Identities = 36/110 (32%), Positives = 57/110 (51%), Gaps = 6/110 (5%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSP 68
+R RV E +R AL ++ +D + + ++ V +S D+R A V IS + D +
Sbjct: 4 KRRERVAEAIREALAEILRR--VKDPRVG--MAGVTSVELSPDMRHARVRISVIGDDETR 59
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
R + L FIR +GR++R LR+VPEL FR D S ++ L+
Sbjct: 60 RRTMEGLERARGFIRSELGRAIR-LRHVPELDFRLDESAAYSVRIAQLLR 108
>gi|15675570|ref|NP_269744.1| ribosome-binding factor A [Streptococcus pyogenes M1 GAS]
gi|28895285|ref|NP_801635.1| ribosome-binding factor A [Streptococcus pyogenes SSI-1]
gi|161936121|ref|YP_282771.2| ribosome-binding factor A [Streptococcus pyogenes MGAS5005]
gi|13622774|gb|AAK34465.1| putative ribosome binding factor A [Streptococcus pyogenes M1 GAS]
gi|28810531|dbj|BAC63468.1| putative ribosome binding factor A [Streptococcus pyogenes SSI-1]
Length = 118
Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats.
Identities = 27/116 (23%), Positives = 54/116 (46%), Gaps = 6/116 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
+ R RVG E++ + ++ + +D + ++I+EV M DL +A VY ++ D
Sbjct: 2 AMANHRIDRVGMEIKREVNDIL-QKKVRDPRVQG--VTITEVQMQGDLSLAKVYYTIMSD 58
Query: 66 --VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ + L I+ +G+ L + +P+L F D S+ K++ L+
Sbjct: 59 LASDNQKAQTGLEKATGTIKRELGKQL-TMYKIPDLVFEKDNSIAYGNKIDQLLRD 113
>gi|167763867|ref|ZP_02435994.1| hypothetical protein BACSTE_02248 [Bacteroides stercoris ATCC
43183]
gi|167697983|gb|EDS14562.1| hypothetical protein BACSTE_02248 [Bacteroides stercoris ATCC
43183]
Length = 110
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 32/112 (28%), Positives = 59/112 (52%), Gaps = 4/112 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
+ R ++ ++ L + L Q + + +IS+S V +S D+ VA Y+S+
Sbjct: 1 METTRQNKIARLLQKELSDIFL---LQTKSMPGILISVSAVRISPDMSVARAYLSVFPSE 57
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRN-LRYVPELRFRYDTSLQSYWKLNALM 117
+ +I +N N+K IR +G +R+ LR +PEL+F D SL +++ L+
Sbjct: 58 RSEEIIKNVNANMKSIRFELGTRVRHQLRIIPELKFFVDDSLDYLERIDELL 109
>gi|319952940|ref|YP_004164207.1| ribosome-binding factor a [Cellulophaga algicola DSM 14237]
gi|319421600|gb|ADV48709.1| ribosome-binding factor A [Cellulophaga algicola DSM 14237]
Length = 130
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 56/120 (46%), Gaps = 2/120 (1%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
++R ++G ++ + V+ D + +IS+S+V ++ DL +A VY+S+
Sbjct: 1 METQRQKKIGGVIQKDIADVLQRAAT-DGGLRGTLISVSKVIVTTDLSIAKVYVSIFPTK 59
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRN-LRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
++ + N I+ + + +N LR +PEL F D SL+ + + P+
Sbjct: 60 DAQELLKGMKSNQPLIKHELAQRTKNQLRRMPELMFFLDDSLEYIDGIEKSLKGKDNPID 119
>gi|146298830|ref|YP_001193421.1| ribosome-binding factor A [Flavobacterium johnsoniae UW101]
gi|189039541|sp|A5FL10|RBFA_FLAJO RecName: Full=Ribosome-binding factor A
gi|146153248|gb|ABQ04102.1| ribosome-binding factor A [Flavobacterium johnsoniae UW101]
Length = 130
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 59/120 (49%), Gaps = 2/120 (1%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
+ R ++G ++ L+ ++ E + +S VIS+S+V ++ DL VATVY+S+
Sbjct: 1 METNRQKKIGSVIQKDLVDIL-QGEVRKNGVSNLVISVSKVSVTSDLSVATVYLSIFPQE 59
Query: 67 SPDRVISALNCNIKFIRGRIGRSLR-NLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
+ + N I+ + + +R LR VP L F D SL K++ + + P+
Sbjct: 60 KAKETLEGIKSNTTLIKHDLSQRVRLQLRRVPNLVFFIDDSLDYIEKIDNALAGKENPIE 119
>gi|241764253|ref|ZP_04762284.1| ribosome-binding factor A [Acidovorax delafieldii 2AN]
gi|241366376|gb|EER60898.1| ribosome-binding factor A [Acidovorax delafieldii 2AN]
Length = 123
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 32/127 (25%), Positives = 59/127 (46%), Gaps = 5/127 (3%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
M K RA +V ++++ L +I E +D + ++++ V ++ D A V+
Sbjct: 1 MAAKKSSTPNRAFKVADQIQRDLTELIAR-ELKDPRVG--MVTLQGVEVTPDYAHAKVFF 57
Query: 61 SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
SL + P +ALN F+R + + L ++ VP L F +D + + +NAL+
Sbjct: 58 SLLVG-DPVETQAALNQAAGFLRNGLFKRL-HIHTVPTLHFVFDRTSERAADMNALIAKA 115
Query: 121 KIPVALE 127
A E
Sbjct: 116 VSSRAKE 122
>gi|332528895|ref|ZP_08404865.1| ribosome-binding factor A [Hylemonella gracilis ATCC 19624]
gi|332041652|gb|EGI78008.1| ribosome-binding factor A [Hylemonella gracilis ATCC 19624]
Length = 122
Score = 108 bits (270), Expect = 4e-22, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 5/117 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
R +V ++++ L +I E +D + ++++ V ++ D A VY S+ + P
Sbjct: 10 RGHKVADQIQRDLSELIAR-ELKDPRVG--MVTLQGVEVTPDYAHAKVYFSVLIGE-PQE 65
Query: 71 VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALE 127
ALN F+R + + L ++ VP L F +D + + +NAL+ A E
Sbjct: 66 AQDALNQAAGFLRNGLFKRL-HIHTVPTLHFVFDRTTERAADMNALIAKAVSSRAKE 121
>gi|91788292|ref|YP_549244.1| ribosome-binding factor A [Polaromonas sp. JS666]
gi|123164888|sp|Q12AU6|RBFA_POLSJ RecName: Full=Ribosome-binding factor A
gi|91697517|gb|ABE44346.1| ribosome-binding factor A [Polaromonas sp. JS666]
Length = 122
Score = 108 bits (270), Expect = 4e-22, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 56/118 (47%), Gaps = 6/118 (5%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
M+ K+ + R RV ++++ L +I E +D + +++I V ++ D A V+
Sbjct: 1 MRKKSSTPN-RGFRVADQIQRDLTELIAR-ELKDPRVG--MVTIQAVEVTPDYAHAKVFF 56
Query: 61 SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
S+ + P ALN F+R + + L VP L F +D + + +NAL+
Sbjct: 57 SVLVG-DPKACEEALNQAAGFLRNGLFKRLMT-HTVPTLHFHFDRTTERAADMNALIA 112
>gi|116618449|ref|YP_818820.1| ribosome-binding factor A [Leuconostoc mesenteroides subsp.
mesenteroides ATCC 8293]
gi|227431855|ref|ZP_03913879.1| ribosome-binding factor A [Leuconostoc mesenteroides subsp.
cremoris ATCC 19254]
gi|122271351|sp|Q03WH5|RBFA_LEUMM RecName: Full=Ribosome-binding factor A
gi|116097296|gb|ABJ62447.1| ribosome-binding factor A [Leuconostoc mesenteroides subsp.
mesenteroides ATCC 8293]
gi|227352397|gb|EEJ42599.1| ribosome-binding factor A [Leuconostoc mesenteroides subsp.
cremoris ATCC 19254]
Length = 117
Score = 108 bits (270), Expect = 4e-22, Method: Composition-based stats.
Identities = 30/111 (27%), Positives = 55/111 (49%), Gaps = 6/111 (5%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD--VS 67
+RA R+ +EV+ + ++L D + ++++ V +S DL++AT+Y S+ D
Sbjct: 5 QRAGRLAQEVQRDVTDLLLKR-INDPRVKE--VTVTSVELSGDLQIATIYYSILSDLASD 61
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ + L IR +G L + PEL+F DTS+Q + L+
Sbjct: 62 AKKTQAGLEAASGLIRKELGSRLTVYK-TPELKFVRDTSVQYGNHIEDLIR 111
>gi|90961549|ref|YP_535465.1| ribosome-binding factor A [Lactobacillus salivarius UCC118]
gi|122449169|sp|Q1WUF3|RBFA_LACS1 RecName: Full=Ribosome-binding factor A
gi|90820743|gb|ABD99382.1| Ribosome-binding factor A [Lactobacillus salivarius UCC118]
Length = 119
Score = 108 bits (270), Expect = 4e-22, Method: Composition-based stats.
Identities = 31/110 (28%), Positives = 58/110 (52%), Gaps = 6/110 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
R R+ +E++ + ++L +D + ++I+ V +S DL+ AT+Y S+ D + D
Sbjct: 6 RVGRLSQEIQREVNDILLKR-VRDPRVKD--VTITGVEVSGDLQHATIYYSILSDKASDE 62
Query: 71 --VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
V + L+ IRG +G L ++ PE++F D S+Q +N L+
Sbjct: 63 KKVQTGLDKATSLIRGELGHRL-SIYVTPEIKFERDKSVQYGDHINELLR 111
>gi|224543306|ref|ZP_03683845.1| hypothetical protein CATMIT_02506 [Catenibacterium mitsuokai DSM
15897]
gi|224523839|gb|EEF92944.1| hypothetical protein CATMIT_02506 [Catenibacterium mitsuokai DSM
15897]
Length = 109
Score = 108 bits (270), Expect = 4e-22, Method: Composition-based stats.
Identities = 29/113 (25%), Positives = 56/113 (49%), Gaps = 6/113 (5%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
S + ++ + L +IL +E +D + + +++ V S D+ VA VY++ +
Sbjct: 3 SLKIDKMNHYIMKELS-LILRDEVKDPAL--RMCTVTSVSCSNDMSVAKVYVTFMKNQGK 59
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+ AL+ FIR ++ R L+ +R PEL F+ D SL+ ++ L+
Sbjct: 60 G--LQALDRCKGFIRSQLARRLK-IRKCPELIFKVDESLEYGNRIEELIKNLH 109
>gi|28380146|sp|Q9X765|RBFA_LACLC RecName: Full=Ribosome-binding factor A
gi|4583984|emb|CAB40558.1| ribosome binding factor A [Lactococcus lactis]
Length = 113
Score = 107 bits (269), Expect = 4e-22, Method: Composition-based stats.
Identities = 26/114 (22%), Positives = 58/114 (50%), Gaps = 6/114 (5%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD- 65
NS R+ RV E++ + ++ N+ +D + ++I++V ++ DL ATVY SL +
Sbjct: 2 GNSFRSDRVAVEIQREINDIL-RNKVRDPRVQD--VNITDVQLTGDLSQATVYYSLLSNL 58
Query: 66 -VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
++ +AL + + + + + +P+L F D S++ K++ ++
Sbjct: 59 ASDNEKAATALKKATGLFKSELAKRMTIFK-IPDLTFAKDESVEYGSKIDEILT 111
>gi|332141183|ref|YP_004426921.1| ribosome-binding factor A [Alteromonas macleodii str. 'Deep
ecotype']
gi|238693266|sp|B4RXT9|RBFA_ALTMD RecName: Full=Ribosome-binding factor A
gi|327551205|gb|AEA97923.1| ribosome-binding factor A [Alteromonas macleodii str. 'Deep
ecotype']
Length = 133
Score = 107 bits (269), Expect = 4e-22, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 59/116 (50%), Gaps = 4/116 (3%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL- 64
+ R RV ++V + ++ NE++ R+ +I++S+V +S DL A +++++
Sbjct: 2 AREFSRTDRVAQQVHKEVASIL-QNEYKHRVGDMPLITVSDVDVSRDLAHAKIFVTIYNS 60
Query: 65 -DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ I L KFIR + + LR +R VP+L F D S+ +++ L+
Sbjct: 61 TEEEGKVQIKQLAEYKKFIRSILAKRLR-MRSVPDLHFFEDKSIIEGMRISNLVSQ 115
>gi|313901528|ref|ZP_07834974.1| ribosome-binding factor A [Thermaerobacter subterraneus DSM 13965]
gi|313468206|gb|EFR63674.1| ribosome-binding factor A [Thermaerobacter subterraneus DSM 13965]
Length = 139
Score = 107 bits (269), Expect = 4e-22, Method: Composition-based stats.
Identities = 34/110 (30%), Positives = 57/110 (51%), Gaps = 6/110 (5%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV-SP 68
+R RV + ++ AL ++ +D + + +++ V +S DLR A V IS+ D
Sbjct: 10 KRHQRVADAIQEALAEILRR--VKDPRVG--MAAVTGVELSPDLRHARVRISVIGDEAER 65
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
R + L FIR +GR++R LR+VPEL FR D S ++ ++
Sbjct: 66 QRTMEGLEHARGFIRSELGRAVR-LRHVPELDFRLDDSAAYSVRIAQILR 114
>gi|21911030|ref|NP_665298.1| ribosome-binding factor A [Streptococcus pyogenes MGAS315]
gi|251783180|ref|YP_002997485.1| ribosome-binding factor A [Streptococcus dysgalactiae subsp.
equisimilis GGS_124]
gi|54039029|sp|P65972|RBFA_STRP3 RecName: Full=Ribosome-binding factor A
gi|54041789|sp|P65971|RBFA_STRP1 RecName: Full=Ribosome-binding factor A
gi|21905239|gb|AAM80101.1| putative ribosome binding factor A [Streptococcus pyogenes MGAS315]
gi|242391812|dbj|BAH82271.1| truncated ribosome-binding factor A [Streptococcus dysgalactiae
subsp. equisimilis GGS_124]
gi|322412484|gb|EFY03392.1| ribosome-binding factor A [Streptococcus dysgalactiae subsp.
dysgalactiae ATCC 27957]
gi|323127907|gb|ADX25204.1| ribosome-binding factor A [Streptococcus dysgalactiae subsp.
equisimilis ATCC 12394]
Length = 116
Score = 107 bits (269), Expect = 4e-22, Method: Composition-based stats.
Identities = 27/113 (23%), Positives = 54/113 (47%), Gaps = 6/113 (5%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD--V 66
+ R RVG E++ + ++ + +D + ++I+EV M DL +A VY ++ D
Sbjct: 3 NHRIDRVGMEIKREVNDIL-QKKVRDPRVQG--VTITEVQMQGDLSLAKVYYTIMSDLAS 59
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ + L I+ +G+ L + +P+L F D S+ K++ L+
Sbjct: 60 DNQKAQTGLEKATGTIKRELGKQL-TMYKIPDLVFEKDNSIAYGNKIDQLLRD 111
>gi|124024898|ref|YP_001014014.1| ribosome-binding factor A [Prochlorococcus marinus str. NATL1A]
gi|166219387|sp|A2BZT9|RBFA_PROM1 RecName: Full=Ribosome-binding factor A
gi|123959966|gb|ABM74749.1| Ribosome-binding factor A [Prochlorococcus marinus str. NATL1A]
Length = 123
Score = 107 bits (269), Expect = 4e-22, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 61/118 (51%), Gaps = 3/118 (2%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV- 66
NSRR ++ ++ + +++N +D I + +I+I+ V +S DL+ A ++ISL +
Sbjct: 3 NSRRVEKLAALLKREISELLVNG-IRDERIHQAMITITSVEVSGDLQHARIFISLFGEEK 61
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPV 124
D+V+ L FIR + R L +R PEL F+ D + ++ L+ ++
Sbjct: 62 KKDQVLVGLEEAKGFIRAELARRL-QMRRSPELVFKIDKGMTKGPEVLDLLNALELER 118
>gi|323340007|ref|ZP_08080273.1| ribosome-binding factor A [Lactobacillus ruminis ATCC 25644]
gi|323092513|gb|EFZ35119.1| ribosome-binding factor A [Lactobacillus ruminis ATCC 25644]
Length = 118
Score = 107 bits (269), Expect = 5e-22, Method: Composition-based stats.
Identities = 24/115 (20%), Positives = 55/115 (47%), Gaps = 6/115 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD--VSP 68
R R+ +E++ + +++ +D + ++I+ V ++ DL+ AT+Y S +
Sbjct: 6 RVGRLSQEIQREVNDILMKR-VRDPRVEG--VTITGVEVTGDLQNATIYYSTLSNLASDA 62
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIP 123
++ L+ IR +G+ L ++ PEL+F D S++ ++ L+
Sbjct: 63 EKTQKGLDKATGLIRRELGQRL-SIYVTPELKFVRDESVRYGDHIDELLNKLHQQ 116
>gi|171058385|ref|YP_001790734.1| ribosome-binding factor A [Leptothrix cholodnii SP-6]
gi|238689092|sp|B1XY68|RBFA_LEPCP RecName: Full=Ribosome-binding factor A
gi|170775830|gb|ACB33969.1| ribosome-binding factor A [Leptothrix cholodnii SP-6]
Length = 123
Score = 107 bits (269), Expect = 5e-22, Method: Composition-based stats.
Identities = 33/127 (25%), Positives = 64/127 (50%), Gaps = 7/127 (5%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
M+NK + R RV ++++ + +I + +D I +++I+ V ++ D A VY
Sbjct: 1 MRNKRVIPN-RTFRVSDQIQRDVAELI--RDLKDPRIG--MVTINSVDITPDYAHAKVYF 55
Query: 61 SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
S+ + + D + ALN F+R + + L + VP L F +D + + +L+AL+
Sbjct: 56 SVLIGDAADSEL-ALNEAAGFLRNGLFKRL-QIHTVPTLHFHFDRTTERAAELSALITQA 113
Query: 121 KIPVALE 127
AL+
Sbjct: 114 NARRALD 120
>gi|323141197|ref|ZP_08076098.1| ribosome-binding factor A [Phascolarctobacterium sp. YIT 12067]
gi|322414340|gb|EFY05158.1| ribosome-binding factor A [Phascolarctobacterium sp. YIT 12067]
Length = 125
Score = 107 bits (269), Expect = 5e-22, Method: Composition-based stats.
Identities = 27/108 (25%), Positives = 56/108 (51%), Gaps = 5/108 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP-D 69
R +V E ++ + ++L ++ +D I +S++ V ++ D+ A ++IS+ D
Sbjct: 5 RVEKVQEAIKHEISKMLL-HDVKDPRI--QFVSVTGVELTDDMSYAKIFISMYGPKDKQD 61
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
ALN + F+R I + +R LR+ P L + DTS + + +++
Sbjct: 62 ETWKALNKALGFMRTEIAKRIR-LRFAPTLILQKDTSAEYSAHIQSIL 108
>gi|326692684|ref|ZP_08229689.1| ribosome-binding factor A [Leuconostoc argentinum KCTC 3773]
Length = 117
Score = 107 bits (269), Expect = 5e-22, Method: Composition-based stats.
Identities = 29/111 (26%), Positives = 54/111 (48%), Gaps = 6/111 (5%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD--VS 67
+RA R+ +E++ + ++L D + ++++ V +S DL++AT+Y S+ D
Sbjct: 5 QRAGRLAQEIQRDVTDLLLKR-INDPRVKD--VTVTSVELSGDLQIATIYYSILSDLASD 61
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ + L IR +G L + PELRF D S+Q + L+
Sbjct: 62 GQKAQAGLEAASGLIRKELGARLTVYK-TPELRFVRDQSVQYGNHIEDLIR 111
>gi|270308252|ref|YP_003330310.1| ribosome-binding factor A [Dehalococcoides sp. VS]
gi|270154144|gb|ACZ61982.1| ribosome-binding factor A [Dehalococcoides sp. VS]
Length = 118
Score = 107 bits (269), Expect = 5e-22, Method: Composition-based stats.
Identities = 32/112 (28%), Positives = 61/112 (54%), Gaps = 4/112 (3%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP-LDVS 67
SRR ++ + R+ + +L E +D + ++S++EV +S D+R A VY+S +
Sbjct: 2 SRRIKKLNQLFRADISA-LLQKEVRDPRL-DTLLSVNEVDISEDMRHANVYVSHLSGNEH 59
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
D +++ALN F R I + ++RY+P F +D +++ +LN L+
Sbjct: 60 KDEILAALNTAAGFFRTEIAKK-TDIRYMPVFHFVWDDTIERGVRLNTLIDR 110
>gi|225570598|ref|ZP_03779623.1| hypothetical protein CLOHYLEM_06700 [Clostridium hylemonae DSM
15053]
gi|225160611|gb|EEG73230.1| hypothetical protein CLOHYLEM_06700 [Clostridium hylemonae DSM
15053]
Length = 126
Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats.
Identities = 31/116 (26%), Positives = 54/116 (46%), Gaps = 8/116 (6%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
MK ++ KN+ RV EV+ L +I +D ++ S+ ++ DL+ YI
Sbjct: 1 MKKRSIKNT----RVNTEVQRELSSII-RGGIKDPRVAP-WTSVVAAEVAPDLKTCKAYI 54
Query: 61 SLPLDVS-PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNA 115
S+ D I L +IR + R+L N+R PE++F D S++ ++
Sbjct: 55 SVLGDEEAQKETIKGLQSAEGYIRRELARNL-NMRNTPEIKFILDQSIEYGVNMSK 109
>gi|19746622|ref|NP_607758.1| ribosome-binding factor A [Streptococcus pyogenes MGAS8232]
gi|50914802|ref|YP_060774.1| ribosome-binding factor A [Streptococcus pyogenes MGAS10394]
gi|94989040|ref|YP_597141.1| ribosome-binding factor A [Streptococcus pyogenes MGAS9429]
gi|94991038|ref|YP_599138.1| ribosome-binding factor A [Streptococcus pyogenes MGAS10270]
gi|94992931|ref|YP_601030.1| ribosome-binding factor A [Streptococcus pyogenes MGAS2096]
gi|306826869|ref|ZP_07460169.1| ribosome-binding factor A [Streptococcus pyogenes ATCC 10782]
gi|19748841|gb|AAL98257.1| putative ribosome binding factor A [Streptococcus pyogenes
MGAS8232]
gi|50903876|gb|AAT87591.1| Ribosome-binding factor A [Streptococcus pyogenes MGAS10394]
gi|94542548|gb|ABF32597.1| ribosome-binding factor A [Streptococcus pyogenes MGAS9429]
gi|94544546|gb|ABF34594.1| Ribosome-binding factor A [Streptococcus pyogenes MGAS10270]
gi|94546439|gb|ABF36486.1| Ribosome-binding factor A [Streptococcus pyogenes MGAS2096]
gi|304430887|gb|EFM33896.1| ribosome-binding factor A [Streptococcus pyogenes ATCC 10782]
Length = 118
Score = 107 bits (268), Expect = 6e-22, Method: Composition-based stats.
Identities = 27/115 (23%), Positives = 54/115 (46%), Gaps = 6/115 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
+ R RVG E++ + ++ + +D + ++I+EV M DL +A VY ++ D
Sbjct: 2 AMANHRIDRVGMEIKREVNDIL-QKKVRDPRVQG--VTITEVQMQGDLSLAKVYYTIMSD 58
Query: 66 --VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ + L I+ +G+ L + +P+L F D S+ K++ L+
Sbjct: 59 LASDNQKAQTGLEKATGTIKRELGKQL-TMYKIPDLVFEKDNSIAYGNKIDQLLR 112
>gi|42526615|ref|NP_971713.1| ribosome-binding factor A [Treponema denticola ATCC 35405]
gi|61215109|sp|Q73NP7|RBFA_TREDE RecName: Full=Ribosome-binding factor A
gi|41816808|gb|AAS11594.1| ribosome-binding factor A [Treponema denticola ATCC 35405]
gi|325473157|gb|EGC76353.1| ribosome-binding factor A [Treponema denticola F0402]
Length = 132
Score = 107 bits (268), Expect = 6e-22, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 60/119 (50%), Gaps = 3/119 (2%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP-D 69
R R+GE++R + +I + + +D +S ++SI+ V +S DL A VY+S LD
Sbjct: 5 RLARLGEQIREEISALICSGKIKDPRVSS-LLSINRVIVSGDLAYAKVYVSSFLDEHKTK 63
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALEK 128
+ + L FIR + + L ++R PEL F +D S++ + + + ++
Sbjct: 64 QGVRGLENASGFIRTSLAKKL-HVRQCPELTFIFDKSIKEGIDMVNKLESLEYFTDPDE 121
>gi|167746754|ref|ZP_02418881.1| hypothetical protein ANACAC_01466 [Anaerostipes caccae DSM 14662]
gi|167653714|gb|EDR97843.1| hypothetical protein ANACAC_01466 [Anaerostipes caccae DSM 14662]
Length = 116
Score = 107 bits (268), Expect = 6e-22, Method: Composition-based stats.
Identities = 30/110 (27%), Positives = 56/110 (50%), Gaps = 4/110 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
KNS + R+ EV+ L +I E +D I+ + S+ + ++ DL+ YIS+ D
Sbjct: 3 KNSIKNTRINGEVQRELSRIISR-EIKDPRIAP-MTSVVDAVVTSDLKQCKAYISVLGDQ 60
Query: 67 S-PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNA 115
+ ++ L + +IR + S+ NLR PE+ F D S++ +++
Sbjct: 61 KAKEDTLNGLRSAVGYIRRELAHSI-NLRNTPEITFILDDSIEYGVEMSK 109
>gi|257439275|ref|ZP_05615030.1| ribosome-binding factor A [Faecalibacterium prausnitzii A2-165]
gi|257198150|gb|EEU96434.1| ribosome-binding factor A [Faecalibacterium prausnitzii A2-165]
Length = 136
Score = 107 bits (268), Expect = 6e-22, Method: Composition-based stats.
Identities = 23/116 (19%), Positives = 53/116 (45%), Gaps = 4/116 (3%)
Query: 14 RVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS-PDRVI 72
R+ ++++ ++ +I +D + +++++ + ++ DL VA VY+S+ P I
Sbjct: 15 RLAQDMKREVIAII--GRLKDPRLEGGLLTVTRLDVTPDLDVAKVYVSVMGREDGPKPAI 72
Query: 73 SALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALEK 128
ALN +R + + + ++R P F D +N L+ + E+
Sbjct: 73 EALNRAAGHVRTEVSKKM-HIRKAPRFIFVEDDGAAYAAHINELLRTLNVNGDAEE 127
>gi|73748749|ref|YP_307988.1| ribosome-binding factor A [Dehalococcoides sp. CBDB1]
gi|147669515|ref|YP_001214333.1| ribosome-binding factor A [Dehalococcoides sp. BAV1]
gi|289432775|ref|YP_003462648.1| ribosome-binding factor A [Dehalococcoides sp. GT]
gi|123619752|sp|Q3ZXU4|RBFA_DEHSC RecName: Full=Ribosome-binding factor A
gi|189039538|sp|A5FQR5|RBFA_DEHSB RecName: Full=Ribosome-binding factor A
gi|73660465|emb|CAI83072.1| ribosome-binding factor A [Dehalococcoides sp. CBDB1]
gi|146270463|gb|ABQ17455.1| ribosome-binding factor A [Dehalococcoides sp. BAV1]
gi|288946495|gb|ADC74192.1| ribosome-binding factor A [Dehalococcoides sp. GT]
Length = 118
Score = 107 bits (268), Expect = 6e-22, Method: Composition-based stats.
Identities = 33/112 (29%), Positives = 61/112 (54%), Gaps = 4/112 (3%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP-LDVS 67
SRR ++ + R+ + +L E +D + ++S++EV +S D+R A VY+S D
Sbjct: 2 SRRIKKLNQLFRADISA-LLQKEIRDPRL-DTLLSVNEVDISEDMRHANVYVSHLAGDEH 59
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
D +++ALN F R I + ++RY+P F +D +++ +LN L+
Sbjct: 60 KDEILAALNAAAGFFRTEIAKK-TDIRYMPVFHFVWDITIERGVRLNTLIDQ 110
>gi|291287259|ref|YP_003504075.1| ribosome-binding factor A [Denitrovibrio acetiphilus DSM 12809]
gi|290884419|gb|ADD68119.1| ribosome-binding factor A [Denitrovibrio acetiphilus DSM 12809]
Length = 110
Score = 107 bits (268), Expect = 6e-22, Method: Composition-based stats.
Identities = 39/109 (35%), Positives = 58/109 (53%), Gaps = 4/109 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
R RVGE +RS +M VI+ E D I V++ ++ ++ DL +A VY S + +
Sbjct: 2 RDRRVGELLRSEIMDVIIK-EVNDPKIKDVVLT--KIDVTKDLSIAKVYFSTYNKSAKEG 58
Query: 71 VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ LN + FIR I + LR L+ VP LRF YD S K++ L+
Sbjct: 59 IERGLNRSAGFIRHCILKGLR-LKKVPTLRFIYDDSGDYGQKIDGLLKD 106
>gi|312865492|ref|ZP_07725719.1| ribosome-binding factor A [Streptococcus downei F0415]
gi|311099010|gb|EFQ57227.1| ribosome-binding factor A [Streptococcus downei F0415]
Length = 117
Score = 107 bits (268), Expect = 6e-22, Method: Composition-based stats.
Identities = 28/116 (24%), Positives = 58/116 (50%), Gaps = 6/116 (5%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD-- 65
NS R RVG E++ + ++ + +D +S ++I++V M DL +A VY ++ D
Sbjct: 3 NSFRTDRVGMEIKREVNEIL-QKKVRDPRVSG--VTITDVQMLGDLSLAKVYYTIMSDLA 59
Query: 66 VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+ + L I+ +G++L + +P+L F D S+ K++ ++ +
Sbjct: 60 SDNQKAQTGLEKAKGTIKRELGKNL-QMYKIPDLTFIKDESIAYGNKIDQMLRDLE 114
>gi|90416136|ref|ZP_01224068.1| ribosome-binding factor A [marine gamma proteobacterium HTCC2207]
gi|90331861|gb|EAS47075.1| ribosome-binding factor A [marine gamma proteobacterium HTCC2207]
Length = 142
Score = 107 bits (268), Expect = 6e-22, Method: Composition-based stats.
Identities = 34/126 (26%), Positives = 67/126 (53%), Gaps = 10/126 (7%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
P+ RA RV + V+ L +I +E +D + +++++EV +S DL V+++ D
Sbjct: 2 PREFTRAERVSDSVQQELATLI-RSEVRDPRVG--MVNVTEVQISRDLAYGKVFVNFVGD 58
Query: 66 VSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC---L 119
+++ ++ALN ++R +G S+ LR VP+L F +D + + L+AL+
Sbjct: 59 REQEQIDEAMAALNGASGYLRKLLGASI-QLRIVPKLNFIFDETGRRGQHLSALIDLAIS 117
Query: 120 PKIPVA 125
++P
Sbjct: 118 KEMPAD 123
>gi|326803573|ref|YP_004321391.1| ribosome-binding factor A [Aerococcus urinae ACS-120-V-Col10a]
gi|326651360|gb|AEA01543.1| ribosome-binding factor A [Aerococcus urinae ACS-120-V-Col10a]
Length = 117
Score = 107 bits (268), Expect = 6e-22, Method: Composition-based stats.
Identities = 29/115 (25%), Positives = 59/115 (51%), Gaps = 6/115 (5%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD- 65
+RR RV +E+ + ++ E +D + I+I++V ++ DL+ AT+Y S D
Sbjct: 2 STNRRVERVSQEILREVNSIL-RKEVKDPRVKN--ITITDVDLTGDLQNATIYYSTLSDS 58
Query: 66 -VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
++V L+ +R +G+ LR + PE+ F+ D S++ +++ L+
Sbjct: 59 QSEHEKVQKGLDKVSGLVRSLLGQRLRIYK-TPEVVFKRDESIEYGQRIDQLLAQ 112
>gi|305665853|ref|YP_003862140.1| putative ribosome-binding factor A [Maribacter sp. HTCC2170]
gi|88710624|gb|EAR02856.1| putative ribosome-binding factor A [Maribacter sp. HTCC2170]
Length = 130
Score = 107 bits (268), Expect = 6e-22, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 59/120 (49%), Gaps = 2/120 (1%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
++R ++G ++ ++ ++ D ++ +IS+S+V ++ DL +A VYIS+ +
Sbjct: 1 METQRQKKIGGVIQKDIVDILQRAAI-DGGLTGILISVSKVTVTTDLSIAKVYISIFPNK 59
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRN-LRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
++ + N I+ + + ++ LR VPEL F D SL + + + P+
Sbjct: 60 DSKELLEGIQSNQPLIKHELAQRTKHQLRRVPELLFFLDDSLDYIENIENSLKGEENPIE 119
>gi|307825111|ref|ZP_07655332.1| ribosome-binding factor A [Methylobacter tundripaludum SV96]
gi|307733859|gb|EFO04715.1| ribosome-binding factor A [Methylobacter tundripaludum SV96]
Length = 120
Score = 107 bits (268), Expect = 7e-22, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 59/115 (51%), Gaps = 6/115 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL- 64
+ R RV +++ L ++L + D + I+I+EV ++ DL VA VY+++
Sbjct: 2 AREFGRNARVSSQMQKELS-LVLQRDIDDSRLG--FITINEVVVTKDLAVAKVYVTVLNV 58
Query: 65 -DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ + LN IR ++ + +R LR++ +LRF YD S + +++ L+
Sbjct: 59 DEQGKKANVKLLNEMSPVIRHQLAKRMR-LRHISDLRFYYDDSFDTGMRVSELLS 112
>gi|332306992|ref|YP_004434843.1| ribosome-binding factor A [Glaciecola agarilytica 4H-3-7+YE-5]
gi|332174321|gb|AEE23575.1| ribosome-binding factor A [Glaciecola agarilytica 4H-3-7+YE-5]
Length = 137
Score = 106 bits (267), Expect = 7e-22, Method: Composition-based stats.
Identities = 27/114 (23%), Positives = 58/114 (50%), Gaps = 4/114 (3%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
+ R RVG+++ + ++ NEF++R ++++S V +S DL + +Y++ +
Sbjct: 2 AREFSRTDRVGQQIHKEIASIL-QNEFKNRDPRLGMVTVSAVEVSRDLSYSKIYVTFFEN 60
Query: 66 VSP--DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
++ L N +IR + +R +R VP ++F D SL +++ L+
Sbjct: 61 DEEVMKNYLAILEENKGYIRTLLANRMR-MRAVPAIKFVRDGSLSEGIRISNLV 113
>gi|88705686|ref|ZP_01103396.1| Ribosome-binding factor A [Congregibacter litoralis KT71]
gi|88700199|gb|EAQ97308.1| Ribosome-binding factor A [Congregibacter litoralis KT71]
Length = 145
Score = 106 bits (267), Expect = 7e-22, Method: Composition-based stats.
Identities = 34/123 (27%), Positives = 59/123 (47%), Gaps = 7/123 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K R RVG+ +R L +I+ E +D + ++SI+ V +S D+ A V+ +L
Sbjct: 2 AKEFSRTERVGDYLRRELA-LIIQREVRDPRLG--MVSITAVDVSRDISHARVHFTLLGS 58
Query: 66 VSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
+ + LN F+R + R ++R VP+LRF +D+S+ L AL+ +
Sbjct: 59 DTAEEAKPCTDVLNNAAGFLRSALARD-ASMRSVPKLRFVFDSSVGRGRDLEALIHRART 117
Query: 123 PVA 125
Sbjct: 118 ADD 120
>gi|167758069|ref|ZP_02430196.1| hypothetical protein CLOSCI_00407 [Clostridium scindens ATCC 35704]
gi|167663966|gb|EDS08096.1| hypothetical protein CLOSCI_00407 [Clostridium scindens ATCC 35704]
Length = 127
Score = 106 bits (267), Expect = 7e-22, Method: Composition-based stats.
Identities = 31/110 (28%), Positives = 51/110 (46%), Gaps = 4/110 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
K S + RV EV+ L +I +D ++ S+ ++ DL+ YIS+ D
Sbjct: 3 KRSIKNTRVSTEVQRELSNII-RGGIKDPRVAP-WTSVVTAEVAPDLKTCKAYISVLGDA 60
Query: 67 -SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNA 115
+ I L +IR + R+L NLR PE+RF D S++ ++
Sbjct: 61 HEQEETIKGLQSAEGYIRRELARTL-NLRNTPEIRFVLDQSIEYGVNMSK 109
>gi|301300287|ref|ZP_07206496.1| ribosome-binding factor A [Lactobacillus salivarius
ACS-116-V-Col5a]
gi|300852128|gb|EFK79803.1| ribosome-binding factor A [Lactobacillus salivarius
ACS-116-V-Col5a]
Length = 119
Score = 106 bits (267), Expect = 7e-22, Method: Composition-based stats.
Identities = 30/110 (27%), Positives = 59/110 (53%), Gaps = 6/110 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
R R+ +E++ + ++L +D + ++I+ V +S DL+ AT+Y S+ D + D
Sbjct: 6 RVGRLSQEIQREVNDILLKR-VRDPRVKD--VTITGVEVSGDLQHATIYYSILSDKASDE 62
Query: 71 --VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
V + L+ IRG++G L ++ PE++F D S+Q ++ L+
Sbjct: 63 KKVQTGLDKATSLIRGKLGHRL-SIYVTPEIKFERDKSVQYGDHIDELLR 111
>gi|121604911|ref|YP_982240.1| ribosome-binding factor A [Polaromonas naphthalenivorans CJ2]
gi|166219385|sp|A1VNU1|RBFA_POLNA RecName: Full=Ribosome-binding factor A
gi|120593880|gb|ABM37319.1| ribosome-binding factor A [Polaromonas naphthalenivorans CJ2]
Length = 122
Score = 106 bits (267), Expect = 7e-22, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 57/118 (48%), Gaps = 6/118 (5%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
M+ K+ + R RV ++++ L +I E +D + ++++ V ++ D A +Y
Sbjct: 1 MRKKSSTPN-RGFRVADQIQRDLTELIAR-ELKDPRVG--MVTVQSVEVTPDYAHAKIYF 56
Query: 61 SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
S+ + + I ALN F+R + + L VP L F +D + + LNAL+
Sbjct: 57 SVLVGDPKECEI-ALNQAAGFLRNGLFKRLMT-HTVPTLHFHFDQTTERAADLNALIA 112
>gi|160898432|ref|YP_001564014.1| ribosome-binding factor A [Delftia acidovorans SPH-1]
gi|238687223|sp|A9C1Z3|RBFA_DELAS RecName: Full=Ribosome-binding factor A
gi|160364016|gb|ABX35629.1| ribosome-binding factor A [Delftia acidovorans SPH-1]
Length = 123
Score = 106 bits (267), Expect = 7e-22, Method: Composition-based stats.
Identities = 31/128 (24%), Positives = 58/128 (45%), Gaps = 5/128 (3%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
M + R+ +V ++++ L +I E +D + ++++ V ++ D A VY
Sbjct: 1 MATRKSAAPNRSFKVSDQIQRDLAELIAR-ELKDPRVG--MVTLQSVEVTPDYAHAKVYF 57
Query: 61 SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
SL + P ALN F+R + + L ++ VP L F YD + + +NAL+
Sbjct: 58 SLLVG-DPQATQEALNQAAGFLRNGLFKRL-HIHTVPTLHFIYDRTSERAADMNALIAKA 115
Query: 121 KIPVALEK 128
E+
Sbjct: 116 VSSRGKEE 123
>gi|295102734|emb|CBL00279.1| ribosome-binding factor A [Faecalibacterium prausnitzii L2-6]
Length = 128
Score = 106 bits (267), Expect = 8e-22, Method: Composition-based stats.
Identities = 24/115 (20%), Positives = 52/115 (45%), Gaps = 4/115 (3%)
Query: 14 RVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS-PDRVI 72
R+ ++++ L+ +I +D + +++++ + ++ DL VA VY+S+ P I
Sbjct: 8 RLAQDMKRELIAII--GRLKDPRLEGGLLTVTRLDVTPDLDVAKVYVSVMGREDGPKPAI 65
Query: 73 SALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALE 127
ALN +R + + + ++R P F D +N L+ + E
Sbjct: 66 EALNRAAGHVRTEVSKKM-HIRKAPRFIFVEDDGAAYAAHINELLRTLNVNGDAE 119
>gi|288940252|ref|YP_003442492.1| ribosome-binding factor A [Allochromatium vinosum DSM 180]
gi|288895624|gb|ADC61460.1| ribosome-binding factor A [Allochromatium vinosum DSM 180]
Length = 127
Score = 106 bits (267), Expect = 8e-22, Method: Composition-based stats.
Identities = 34/123 (27%), Positives = 60/123 (48%), Gaps = 7/123 (5%)
Query: 5 NPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LP 63
N + R R+G E++ AL V++ ++ +D ++ I++ EV ++ DL A VY + P
Sbjct: 2 NEREFDRTERIGAEMKRALA-VLVRDQVKDPRLAN--ITVHEVRVTRDLAHAKVYFTCFP 58
Query: 64 LDVSPDRVISALNCN-IKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
D LN F+R + + +R LR +P+L F YD S+ L+ L+ +
Sbjct: 59 SDEDTPAQERLLNKQLAGFLRHALAQEVR-LRAMPQLHFVYDESIAQGQHLSDLIEQ-AV 116
Query: 123 PVA 125
Sbjct: 117 AKD 119
>gi|293374139|ref|ZP_06620473.1| ribosome-binding factor A [Turicibacter sanguinis PC909]
gi|325837425|ref|ZP_08166407.1| ribosome-binding factor A [Turicibacter sp. HGF1]
gi|292647242|gb|EFF65218.1| ribosome-binding factor A [Turicibacter sanguinis PC909]
gi|325490957|gb|EGC93255.1| ribosome-binding factor A [Turicibacter sp. HGF1]
Length = 117
Score = 106 bits (267), Expect = 8e-22, Method: Composition-based stats.
Identities = 25/109 (22%), Positives = 55/109 (50%), Gaps = 5/109 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP-D 69
R ++ +++ + +I+N E +D I ++++ ++ DL +Y S+ + +
Sbjct: 5 RVQKISKQIERDVTDIIMN-EIKDTKIG--FVTVTGAEVTNDLSFCKIYYSVLGGENRRE 61
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
AL + FIR + + L ++R VPEL F D S++ K++ ++
Sbjct: 62 AATKALIRSKGFIRSELSKRL-SIRKVPELIFEIDESIEYGNKIDTMLN 109
>gi|139473258|ref|YP_001127973.1| ribosome-binding factor A [Streptococcus pyogenes str. Manfredo]
gi|24418641|sp|Q8NZU8|RBFA_STRP8 RecName: Full=Ribosome-binding factor A
gi|61214786|sp|Q5XAH2|RBFA_STRP6 RecName: Full=Ribosome-binding factor A
gi|166219411|sp|A2RD02|RBFA_STRPG RecName: Full=Ribosome-binding factor A
gi|172046223|sp|Q1JKH2|RBFA_STRPC RecName: Full=Ribosome-binding factor A
gi|172046742|sp|Q1JFG5|RBFA_STRPD RecName: Full=Ribosome-binding factor A
gi|172046747|sp|Q1JAC2|RBFA_STRPB RecName: Full=Ribosome-binding factor A
gi|134271504|emb|CAM29725.1| ribosome-binding factor A [Streptococcus pyogenes str. Manfredo]
Length = 116
Score = 106 bits (267), Expect = 8e-22, Method: Composition-based stats.
Identities = 27/112 (24%), Positives = 54/112 (48%), Gaps = 6/112 (5%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD--V 66
+ R RVG E++ + ++ + +D + ++I+EV M DL +A VY ++ D
Sbjct: 3 NHRIDRVGMEIKREVNDIL-QKKVRDPRVQG--VTITEVQMQGDLSLAKVYYTIMSDLAS 59
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ + L I+ +G+ L + +P+L F D S+ K++ L+
Sbjct: 60 DNQKAQTGLEKATGTIKRELGKQL-TMYKIPDLVFEKDNSIAYGNKIDQLLR 110
>gi|148543932|ref|YP_001271302.1| ribosome-binding factor A [Lactobacillus reuteri DSM 20016]
gi|184153328|ref|YP_001841669.1| ribosome-binding factor A [Lactobacillus reuteri JCM 1112]
gi|194467749|ref|ZP_03073735.1| ribosome-binding factor A [Lactobacillus reuteri 100-23]
gi|227364841|ref|ZP_03848888.1| ribosome-binding factor A [Lactobacillus reuteri MM2-3]
gi|325682533|ref|ZP_08162050.1| ribosome-binding factor A [Lactobacillus reuteri MM4-1A]
gi|172048236|sp|A5VJE1|RBFA_LACRD RecName: Full=Ribosome-binding factor A
gi|229568640|sp|B2G6V7|RBFA_LACRJ RecName: Full=Ribosome-binding factor A
gi|148530966|gb|ABQ82965.1| ribosome-binding factor A [Lactobacillus reuteri DSM 20016]
gi|183224672|dbj|BAG25189.1| ribosome-binding factor A [Lactobacillus reuteri JCM 1112]
gi|194452602|gb|EDX41500.1| ribosome-binding factor A [Lactobacillus reuteri 100-23]
gi|227070104|gb|EEI08480.1| ribosome-binding factor A [Lactobacillus reuteri MM2-3]
gi|324978372|gb|EGC15322.1| ribosome-binding factor A [Lactobacillus reuteri MM4-1A]
Length = 119
Score = 106 bits (267), Expect = 8e-22, Method: Composition-based stats.
Identities = 26/118 (22%), Positives = 56/118 (47%), Gaps = 6/118 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
P R R+ +E++ + ++L +D + ++I+ V ++ DL+ AT+Y S+ D
Sbjct: 2 PSKQYRVDRLAQEIQKDVDEILLKR-VRDPRVQN--VTITGVDVTGDLQQATIYYSILSD 58
Query: 66 --VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
++ + L+ IR +G L + PE++F D S+ +++ L+
Sbjct: 59 LASDAEKAQAGLDKATGLIRSELGARLNIFK-TPEIKFVRDPSVAYGSRIDQLINDLH 115
>gi|295396939|ref|ZP_06807061.1| ribosome-binding factor A [Aerococcus viridans ATCC 11563]
gi|294974792|gb|EFG50497.1| ribosome-binding factor A [Aerococcus viridans ATCC 11563]
Length = 131
Score = 106 bits (267), Expect = 8e-22, Method: Composition-based stats.
Identities = 25/119 (21%), Positives = 55/119 (46%), Gaps = 6/119 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD--VSP 68
RA RV +E+ + ++ +D + ++I++V ++ DL+ AT++ + +
Sbjct: 5 RAERVSQEILRDVNDIL-RKTVKDPRVEG--VTITDVEVTGDLQQATIFYTTLSELASER 61
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALE 127
++ L + IR IG+ L N+ PE+ F D S++ ++ L+ +
Sbjct: 62 EKAQKGLEKSSGLIRSEIGKRL-NIYKTPEIFFERDRSIEYGNHIDQLLAQLNKKDDFD 119
>gi|254556870|ref|YP_003063287.1| ribosome-binding factor A [Lactobacillus plantarum JDM1]
gi|300768183|ref|ZP_07078088.1| ribosome-binding factor A [Lactobacillus plantarum subsp. plantarum
ATCC 14917]
gi|308180811|ref|YP_003924939.1| ribosome-binding factor A [Lactobacillus plantarum subsp. plantarum
ST-III]
gi|254045797|gb|ACT62590.1| ribosome-binding factor A [Lactobacillus plantarum JDM1]
gi|300494247|gb|EFK29410.1| ribosome-binding factor A [Lactobacillus plantarum subsp. plantarum
ATCC 14917]
gi|308046302|gb|ADN98845.1| ribosome-binding factor A [Lactobacillus plantarum subsp. plantarum
ST-III]
Length = 117
Score = 106 bits (267), Expect = 9e-22, Method: Composition-based stats.
Identities = 28/113 (24%), Positives = 55/113 (48%), Gaps = 6/113 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV--SP 68
R R+ +E+ + ++L +D ++ ++I+ V ++ DL+ AT+Y S+ D
Sbjct: 6 RVGRLEQEIEREVNDILLKR-VRDPRVAG--VTITGVTVTGDLQQATIYYSILSDKASDG 62
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
++ + L IR +G L + PEL F D S+Q +++ L+ K
Sbjct: 63 EKTAAGLTKATGLIRSELGSRLSIYK-TPELTFERDNSVQYGSRIDELINNLK 114
>gi|109898016|ref|YP_661271.1| ribosome-binding factor A [Pseudoalteromonas atlantica T6c]
gi|123064712|sp|Q15V71|RBFA_PSEA6 RecName: Full=Ribosome-binding factor A
gi|109700297|gb|ABG40217.1| ribosome-binding factor A [Pseudoalteromonas atlantica T6c]
Length = 138
Score = 106 bits (267), Expect = 9e-22, Method: Composition-based stats.
Identities = 29/114 (25%), Positives = 58/114 (50%), Gaps = 4/114 (3%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
+ R RVG+++ + ++ NEF++R ++++S V +S DL +Y++ +
Sbjct: 2 AREFSRTDRVGQQIHKEIASIL-QNEFKNRDPRLGMVTVSAVEVSRDLAYTKIYVTFFEN 60
Query: 66 VSP--DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
D +S L N +IR + +R +R VP ++F D SL +++ L+
Sbjct: 61 DEEVMDNYLSILEENKGYIRTLLANRMR-MRAVPAIKFVRDGSLSEGIRISNLV 113
>gi|194476765|ref|YP_002048944.1| ribosome-binding factor A [Paulinella chromatophora]
gi|171191772|gb|ACB42734.1| ribosome-binding factor A [Paulinella chromatophora]
Length = 124
Score = 106 bits (266), Expect = 9e-22, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 61/118 (51%), Gaps = 3/118 (2%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-DV 66
+RR RV +R +I ++ +DR + + ++S++EV ++ DL+ +++S+ +
Sbjct: 3 QNRRVERVAALIRREASELISSS-IRDRRVHQGMMSVTEVKLAGDLQHCKIFVSIFGSEE 61
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPV 124
+V++ L F+RG +GR L+ LR PE+ F D ++ + L+ +
Sbjct: 62 ERHQVLTGLQSASAFVRGELGRRLK-LRRTPEIVFELDRGIEKGTSVIGLLNELEKKR 118
>gi|28378672|ref|NP_785564.1| ribosome-binding factor A [Lactobacillus plantarum WCFS1]
gi|32171605|sp|Q88VK8|RBFA_LACPL RecName: Full=Ribosome-binding factor A
gi|28271508|emb|CAD64413.1| ribosome-binding factor A [Lactobacillus plantarum WCFS1]
Length = 117
Score = 106 bits (266), Expect = 9e-22, Method: Composition-based stats.
Identities = 28/113 (24%), Positives = 55/113 (48%), Gaps = 6/113 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV--SP 68
R R+ +E+ + ++L +D ++ ++I+ V ++ DL+ AT+Y S+ D
Sbjct: 6 RVGRLEQEIEREVNDILLKR-VRDPRVAG--VTITGVTVTGDLQQATIYYSILSDKASDG 62
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
++ + L IR +G L + PEL F D S+Q +++ L+ K
Sbjct: 63 EKTAAGLAKATGLIRSELGSRLSIYK-TPELTFERDNSVQYGSRIDELINNLK 114
>gi|300691720|ref|YP_003752715.1| ribosome-binding factor A [Ralstonia solanacearum PSI07]
gi|299078780|emb|CBJ51440.1| Ribosome-binding factor A [Ralstonia solanacearum PSI07]
Length = 123
Score = 106 bits (266), Expect = 9e-22, Method: Composition-based stats.
Identities = 28/127 (22%), Positives = 61/127 (48%), Gaps = 5/127 (3%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
M K+ S R LR+ ++++ L +I E ++ + ++++ V ++ D A +Y
Sbjct: 1 MPKKSGSASGRNLRIADQIQRDLAELIQR-ELKNPQMG--LVTLQSVSLTPDYAHAKIYF 57
Query: 61 SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
++ L PD + LN ++ + + L ++ VP L F YD S++ +++ L+
Sbjct: 58 TV-LGAEPDAAAAILNEKAGYLHSLLFKRL-HIHTVPTLHFHYDGSVERGAEMSRLIDQA 115
Query: 121 KIPVALE 127
A +
Sbjct: 116 NASRAKD 122
>gi|17546009|ref|NP_519411.1| ribosome-binding factor A [Ralstonia solanacearum GMI1000]
gi|20978580|sp|Q8XZV5|RBFA_RALSO RecName: Full=Ribosome-binding factor A
gi|17428304|emb|CAD14992.1| probable ribosome-binding factor a protein [Ralstonia solanacearum
GMI1000]
gi|299067342|emb|CBJ38539.1| Ribosome-binding factor A [Ralstonia solanacearum CMR15]
Length = 123
Score = 106 bits (266), Expect = 9e-22, Method: Composition-based stats.
Identities = 28/127 (22%), Positives = 61/127 (48%), Gaps = 5/127 (3%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
M K+ S R LR+ ++++ L +I E ++ + ++++ V ++ D A +Y
Sbjct: 1 MPKKSGSASGRNLRIADQIQRDLAELIQR-EIKNPAMG--LVTLQSVSLTPDYAHAKIYF 57
Query: 61 SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
++ L PD + LN ++ + + L ++ VP L F YD S++ +++ L+
Sbjct: 58 TV-LGAEPDAAAAILNEKAGYLHSLLFKRL-HIHTVPTLHFHYDGSVERGIEMSRLIDQA 115
Query: 121 KIPVALE 127
A +
Sbjct: 116 NASRAKD 122
>gi|254482563|ref|ZP_05095802.1| ribosome-binding factor A [marine gamma proteobacterium HTCC2148]
gi|214037254|gb|EEB77922.1| ribosome-binding factor A [marine gamma proteobacterium HTCC2148]
Length = 132
Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats.
Identities = 33/116 (28%), Positives = 57/116 (49%), Gaps = 7/116 (6%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K R RV + ++ L +I +E +D + ++SI+ V +S D+ A VY +
Sbjct: 2 AKEYARTQRVADFLQRELAALI-QHEVRDPRVG--MVSITGVDVSRDMGHAKVYYTSMSA 58
Query: 66 VSPDRVI---SALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
S D ALN F+R ++ R ++R VP+LRF +D+S+ + L+
Sbjct: 59 NSTDESKECNEALNKAAGFLRSQLSRE-SSMRMVPQLRFYFDSSVGRGRDMEDLIR 113
>gi|325286200|ref|YP_004261990.1| Ribosome-binding factor A [Cellulophaga lytica DSM 7489]
gi|324321654|gb|ADY29119.1| Ribosome-binding factor A [Cellulophaga lytica DSM 7489]
Length = 130
Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 2/120 (1%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
++R ++G ++ + ++ D + +IS+S+V ++ DL +A VYIS+
Sbjct: 1 METQRQKKIGGVIQKDIADILQRAVI-DGGLRGTLISVSKVVVTTDLSIAKVYISIFPHK 59
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRN-LRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
+ D ++ + N I+ + + +N LR VPEL F D SL+ + + P+
Sbjct: 60 NADELLEGIKSNQPLIKHELAQRTKNQLRRVPELLFFIDDSLEYIDGIEKSLKGEDNPIE 119
>gi|317133691|ref|YP_004093005.1| ribosome-binding factor A [Ethanoligenens harbinense YUAN-3]
gi|315471670|gb|ADU28274.1| ribosome-binding factor A [Ethanoligenens harbinense YUAN-3]
Length = 118
Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 7/118 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
R R+ E+++ L ++ +D IS ++SI V +S DL A VY+S +
Sbjct: 5 RLDRLTEDIKRELSDIV--RGLKDPRISG-LVSIVRVDVSNDLSYAKVYVSAVGGDTAQA 61
Query: 71 VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALEK 128
V L F R + L ++R PELRF D S++ + L+ I E
Sbjct: 62 V-EGLKSAAGFARKTLSARL-HVRKTPELRFVADDSMEHSAHIAHLLQD--IKKDEEH 115
>gi|118594127|ref|ZP_01551474.1| ribosome-binding factor A [Methylophilales bacterium HTCC2181]
gi|118439905|gb|EAV46532.1| ribosome-binding factor A [Methylophilales bacterium HTCC2181]
Length = 111
Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats.
Identities = 27/112 (24%), Positives = 62/112 (55%), Gaps = 5/112 (4%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K+ R+ R+ ++++ L +L E +D +++ I+I +V +S L+ A V+ + +
Sbjct: 2 AKDYPRSDRIRQQIKKELAN-LLQKEVKDPSLNQ--ITILDVDVSPCLKHAKVFF-VSQE 57
Query: 66 VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ + V+ L ++ F+R ++ + + R +P+L F YD S+ K++ L+
Sbjct: 58 EASEEVMKGLARSMPFLRSQLAKRMTT-RGIPKLHFVYDKSIDESIKISKLL 108
>gi|218507999|ref|ZP_03505877.1| ribosome-binding factor A [Rhizobium etli Brasil 5]
Length = 89
Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats.
Identities = 40/86 (46%), Positives = 55/86 (63%)
Query: 2 KNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS 61
+ + S+R LRVGE+VR+A+ V+ E +D +I VISISEV MS DL++AT Y++
Sbjct: 3 RPTSSAPSQRMLRVGEQVRAAITQVLQRGEVRDDIIEATVISISEVRMSPDLKIATAYVT 62
Query: 62 LPLDVSPDRVISALNCNIKFIRGRIG 87
VI ALN + KFIRGR+G
Sbjct: 63 PLGVSDHSIVIEALNRHAKFIRGRLG 88
>gi|56808093|ref|ZP_00365885.1| COG0858: Ribosome-binding factor A [Streptococcus pyogenes M49 591]
gi|71904113|ref|YP_280916.1| ribosome-binding factor A [Streptococcus pyogenes MGAS6180]
gi|94994917|ref|YP_603015.1| ribosome-binding factor A [Streptococcus pyogenes MGAS10750]
gi|71803208|gb|AAX72561.1| ribosome-binding factor A [Streptococcus pyogenes MGAS6180]
gi|94548425|gb|ABF38471.1| Ribosome-binding factor A [Streptococcus pyogenes MGAS10750]
Length = 118
Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats.
Identities = 27/115 (23%), Positives = 54/115 (46%), Gaps = 6/115 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
+ R RVG E++ + ++ + +D + ++I+EV M DL +A VY ++ D
Sbjct: 2 AMANHRIDRVGMEIKREVNDIL-QKKVRDPRVQG--VTITEVQMQGDLSLAKVYYTIMSD 58
Query: 66 --VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ + L I+ +G+ L + +P+L F D S+ K++ L+
Sbjct: 59 LASDNQKAQTGLEKATGTIKRELGKQL-TMYKIPDLVFEKDNSIAYGNKIDQLLR 112
>gi|87301786|ref|ZP_01084620.1| ribosome-binding factor A [Synechococcus sp. WH 5701]
gi|87283354|gb|EAQ75309.1| ribosome-binding factor A [Synechococcus sp. WH 5701]
Length = 128
Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats.
Identities = 25/106 (23%), Positives = 54/106 (50%), Gaps = 3/106 (2%)
Query: 15 VGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-DVSPDRVIS 73
+ +R + +++N +D +S ++S+++V ++ DL+ +++S+ D ++
Sbjct: 1 MASLIRREISELLVNG-IKDERVSLGMVSVTQVEVAGDLQHCKIFVSIFGTDEDRQTALA 59
Query: 74 ALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
L F++G + R L NLR PE++F D LQ + L+
Sbjct: 60 GLKSAAPFVKGELARRL-NLRRTPEVQFLLDRGLQKGSSVLGLLSQ 104
>gi|227544947|ref|ZP_03974996.1| ribosome-binding factor A [Lactobacillus reuteri CF48-3A]
gi|300910022|ref|ZP_07127482.1| ribosome-binding factor A [Lactobacillus reuteri SD2112]
gi|227185058|gb|EEI65129.1| ribosome-binding factor A [Lactobacillus reuteri CF48-3A]
gi|300892670|gb|EFK86030.1| ribosome-binding factor A [Lactobacillus reuteri SD2112]
Length = 119
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 25/113 (22%), Positives = 55/113 (48%), Gaps = 6/113 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD--VSP 68
R R+ +E++ + ++L +D + ++I+ V ++ DL+ AT+Y S+ D
Sbjct: 7 RVDRLAQEIQKDVDEILLKR-VRDPRVQN--VTITGVDVTGDLQQATIYYSILSDLASDA 63
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
++ + L+ IR +G L + PE++F D S+ +++ L+
Sbjct: 64 EKAQAGLDKATGLIRSELGARLNIFK-TPEIKFVRDPSVAYGSRIDQLINDLH 115
>gi|170017450|ref|YP_001728369.1| ribosome-binding factor A [Leuconostoc citreum KM20]
gi|238688972|sp|B1MZH3|RBFA_LEUCK RecName: Full=Ribosome-binding factor A
gi|169804307|gb|ACA82925.1| Ribosome-binding factor A [Leuconostoc citreum KM20]
Length = 117
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 29/111 (26%), Positives = 54/111 (48%), Gaps = 6/111 (5%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD--VS 67
+RA R+ +EV+ + ++L D + ++++ V +S DL++AT+Y S+ D
Sbjct: 5 QRAGRLAQEVQRDVTDLLLKR-INDPRVQD--VTVTSVELSGDLQIATIYYSILSDLASD 61
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ + L IR +G L + PEL+F D S+Q + L+
Sbjct: 62 GQKAQAGLEAASGLIRKELGARLTVYK-TPELKFVRDQSVQYGNHIEDLIR 111
>gi|332992819|gb|AEF02874.1| ribosome-binding factor A [Alteromonas sp. SN2]
Length = 133
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 30/125 (24%), Positives = 60/125 (48%), Gaps = 4/125 (3%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL- 64
+ R RV ++V + ++ NE++ R+ +I++S+V ++ DL A +Y+++
Sbjct: 2 AREFSRTDRVSQQVHKEVASIL-QNEYKHRVGDMPLITVSDVDVTRDLAHAKIYVTIYNS 60
Query: 65 -DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIP 123
+ R I L FIR + + LR +R VP L F D S+ +++ L+
Sbjct: 61 TEEEGKRQIKQLAEFQPFIRSILAKRLR-MRSVPHLHFFEDKSIIEGMRISNLVSQTVAA 119
Query: 124 VALEK 128
++
Sbjct: 120 DDAKR 124
>gi|166030872|ref|ZP_02233701.1| hypothetical protein DORFOR_00552 [Dorea formicigenerans ATCC
27755]
gi|166029139|gb|EDR47896.1| hypothetical protein DORFOR_00552 [Dorea formicigenerans ATCC
27755]
Length = 119
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 29/110 (26%), Positives = 52/110 (47%), Gaps = 6/110 (5%)
Query: 18 EVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS-PDRVISALN 76
EV+ L +I +D ++ S+ V ++ DL+ YIS+ DV + I L
Sbjct: 4 EVQRELSEIIRRG-LKDPRVAP-WTSVVAVEVAPDLKTCKAYISVLGDVKAQEDTIKGLR 61
Query: 77 CNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVAL 126
FIR + R+L N+R PE++F D S++ ++ + ++ L
Sbjct: 62 SAEGFIRRELARTL-NMRNTPEIQFILDQSIEYGVNMSK--KIDEVTKDL 108
>gi|110639995|ref|YP_680205.1| ribosome-binding factor A [Cytophaga hutchinsonii ATCC 33406]
gi|123163145|sp|Q11P01|RBFA_CYTH3 RecName: Full=Ribosome-binding factor A
gi|110282676|gb|ABG60862.1| ribosome-binding factor A [Cytophaga hutchinsonii ATCC 33406]
Length = 133
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 29/123 (23%), Positives = 56/123 (45%), Gaps = 3/123 (2%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
S R +V + + + L L ISI+ V MS DL VA +Y+S+ L
Sbjct: 1 MESVRQQKVARLILKEMADIFLKESRV--LFGNVFISITVVRMSPDLSVAKLYLSIMLQE 58
Query: 67 SPDRVISALNCNIKFIRGRIGRSLR-NLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
+ ++ + + K +R +G +R +R +PE+ F D ++ ++ ++ IP
Sbjct: 59 DKNAILKEIKVHTKELRKLLGERIRKQVRIIPEIIFYLDDNVDYANHMDDVLSKITIPKK 118
Query: 126 LEK 128
++
Sbjct: 119 EDE 121
>gi|157803804|ref|YP_001492353.1| ribosome-binding factor A [Rickettsia canadensis str. McKiel]
gi|157785067|gb|ABV73568.1| ribosome-binding factor A [Rickettsia canadensis str. McKiel]
Length = 144
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 27/125 (21%), Positives = 58/125 (46%), Gaps = 2/125 (1%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
MK N+ R ++ + L+ ++ + D + ++I++V ++ DL++A Y
Sbjct: 16 MKKLTKTNAHRQQKLASIINEVLIEILRRGKMLDIRLFNCPLAITKVIVTADLKIANCYF 75
Query: 61 SLPLDV-SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ D ++ ALN + IR + + N+++ PE+RF YD + K+ L+
Sbjct: 76 LPFNTKLTIDDIMDALNNSKNAIRNFVTNKI-NMKFSPEIRFHYDHGFDNAIKVEKLLKN 134
Query: 120 PKIPV 124
+
Sbjct: 135 ISLKR 139
>gi|21672639|ref|NP_660706.1| ribosome-binding factor A [Buchnera aphidicola str. Sg (Schizaphis
graminum)]
gi|25009041|sp|Q8K9H2|RBFA_BUCAP RecName: Full=Ribosome-binding factor A
gi|21623274|gb|AAM67917.1| ribosome-binding factor A [Buchnera aphidicola str. Sg (Schizaphis
graminum)]
Length = 124
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 31/115 (26%), Positives = 63/115 (54%), Gaps = 6/115 (5%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP--- 63
K R+ R+ +E++ + ++I + +D I + +I++SEV +S DL A V++S
Sbjct: 3 KLFNRSFRIAQELQKNIAFII-QHSLKDPRI-KTIITVSEVRLSKDLSYAQVFVSFLETN 60
Query: 64 LDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+++ +V+ LN +IR + + + NLR +P + F +D S K++ L+
Sbjct: 61 SNLTVKKVLILLNRASGYIRKLLCKKM-NLRIIPIIVFFHDDSFFKGNKISKLLN 114
>gi|219682289|ref|YP_002468673.1| ribosome-binding factor A [Buchnera aphidicola str. Tuc7
(Acyrthosiphon pisum)]
gi|254789738|sp|B8D7R3|RBFA_BUCAT RecName: Full=Ribosome-binding factor A
gi|219622022|gb|ACL30178.1| ribosome-binding factor A [Buchnera aphidicola str. Tuc7
(Acyrthosiphon pisum)]
gi|311086113|gb|ADP66195.1| ribosome-binding factor A [Buchnera aphidicola str. LL01
(Acyrthosiphon pisum)]
gi|311086686|gb|ADP66767.1| ribosome-binding factor A [Buchnera aphidicola str. TLW03
(Acyrthosiphon pisum)]
Length = 119
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 62/116 (53%), Gaps = 6/116 (5%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
K R+ R+ +E++ + +I + +D I + +I++SEV +S DL A +++S
Sbjct: 3 KLFNRSDRIAQELQKKIAAII-QHSLKDPRI-KTIITVSEVQVSKDLSYAQIFVSFLESD 60
Query: 67 SPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ ++V I+ LN +IR + + ++ LR VP + F +D S K++ ++
Sbjct: 61 NNEKVKKKITLLNRASSYIRKLLCKRMK-LRIVPNIIFHHDDSFLKGNKISCILEN 115
>gi|209559837|ref|YP_002286309.1| ribosome-binding factor A [Streptococcus pyogenes NZ131]
gi|172046112|sp|Q48RU9|RBFA_STRPM RecName: Full=Ribosome-binding factor A
gi|172046753|sp|Q1J5B5|RBFA_STRPF RecName: Full=Ribosome-binding factor A
gi|226723612|sp|B5XHV2|RBFA_STRPZ RecName: Full=Ribosome-binding factor A
gi|209541038|gb|ACI61614.1| Ribosome-binding factor A [Streptococcus pyogenes NZ131]
Length = 116
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 27/112 (24%), Positives = 54/112 (48%), Gaps = 6/112 (5%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD--V 66
+ R RVG E++ + ++ + +D + ++I+EV M DL +A VY ++ D
Sbjct: 3 NHRIDRVGMEIKREVNDIL-QKKVRDPRVQG--VTITEVQMQGDLSLAKVYYTIMSDLAS 59
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ + L I+ +G+ L + +P+L F D S+ K++ L+
Sbjct: 60 DNQKAQTGLEKATGTIKRELGKQL-TMYKIPDLVFEKDNSIAYGNKIDQLLR 110
>gi|227513186|ref|ZP_03943235.1| ribosome-binding factor A [Lactobacillus buchneri ATCC 11577]
gi|227083567|gb|EEI18879.1| ribosome-binding factor A [Lactobacillus buchneri ATCC 11577]
Length = 116
Score = 105 bits (264), Expect = 1e-21, Method: Composition-based stats.
Identities = 29/113 (25%), Positives = 55/113 (48%), Gaps = 6/113 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
R R+ +E++ + ++L +D + ++++ V ++ DL+ AT+Y S+ D D
Sbjct: 5 RVGRLEQEIQREVNDILLKR-VRDPRVQG--VTLTGVEVTGDLQQATIYYSILSDDKADE 61
Query: 71 --VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
L IRG +G L + PE++F DTS+Q K++ + K
Sbjct: 62 ETTAKGLEKATGLIRGELGSRLSIYK-TPEIKFELDTSVQYGDKIDRFINKLK 113
>gi|332828398|gb|EGK01107.1| ribosome-binding factor A [Dysgonomonas gadei ATCC BAA-286]
Length = 117
Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats.
Identities = 27/108 (25%), Positives = 53/108 (49%), Gaps = 4/108 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
R ++ ++ L + Q + ++S+S V +S DL +A VY+S+
Sbjct: 5 RQQKINRLIQKELSEIFRKQTQQ---MRGVLVSVSTVRVSPDLGLAKVYLSIFPSEQGKE 61
Query: 71 VISALNCNIKFIRGRIGRSL-RNLRYVPELRFRYDTSLQSYWKLNALM 117
++ + N+K +R +G+ + + LR +PEL F D SL ++ L+
Sbjct: 62 LLDNIKTNVKALRFDLGQKVGKQLRVIPELSFYLDDSLDYLDNIDKLL 109
>gi|16752720|ref|NP_444987.1| ribosome-binding factor A [Chlamydophila pneumoniae AR39]
gi|8163433|gb|AAF73669.1| ribosome-binding factor A [Chlamydophila pneumoniae AR39]
Length = 141
Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats.
Identities = 33/111 (29%), Positives = 56/111 (50%), Gaps = 3/111 (2%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDV 66
+RR RV ++ A+ VIL + + IS I+++ V +S DL A VY+S +P +
Sbjct: 24 ENRRIKRVNALLQEAIAKVILK-DVKHPKISNLWITVTRVSLSKDLHSARVYVSVMPHEN 82
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ + + AL + FI R +++ L+Y PEL F D + L+
Sbjct: 83 TKEEALEALKVSAGFIAHRASKNV-VLKYFPELHFYLDDIFSPQDYIENLL 132
>gi|160943260|ref|ZP_02090496.1| hypothetical protein FAEPRAM212_00746 [Faecalibacterium prausnitzii
M21/2]
gi|158445499|gb|EDP22502.1| hypothetical protein FAEPRAM212_00746 [Faecalibacterium prausnitzii
M21/2]
Length = 164
Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats.
Identities = 23/115 (20%), Positives = 52/115 (45%), Gaps = 4/115 (3%)
Query: 14 RVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS-PDRVI 72
R+ ++++ ++ +I +D + +++++ + ++ DL VA VY+S+ P I
Sbjct: 42 RLAQDMKREVIAII--GRLKDPRLEGGLLTVTRLDVTPDLDVAKVYVSVMGRADGPKPAI 99
Query: 73 SALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALE 127
ALN +R + + + ++R P F D +N L+ + E
Sbjct: 100 EALNRAAGHVRTEVSKKM-HIRKAPRFIFVEDDGAAYAAHINELLRSLNVNGEEE 153
>gi|332884608|gb|EGK04865.1| ribosome-binding factor A [Dysgonomonas mossii DSM 22836]
Length = 118
Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats.
Identities = 26/109 (23%), Positives = 53/109 (48%), Gaps = 4/109 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
R ++ ++ L + Q + ++++S V ++ DL +A VY+S+
Sbjct: 5 RQQKINRLIQKELSEIFRKQTQQ---MKGVLVTVSTVRVTPDLGLAKVYLSIFPSEKGKE 61
Query: 71 VISALNCNIKFIRGRIGRSL-RNLRYVPELRFRYDTSLQSYWKLNALMC 118
++ + N+K IR +G+ + + LR +PEL F D SL ++ L+
Sbjct: 62 LLENIRTNVKSIRFDLGQKVGKQLRVIPELAFYLDDSLDYLENIDRLLN 110
>gi|313115480|ref|ZP_07800945.1| ribosome-binding factor A [Faecalibacterium cf. prausnitzii
KLE1255]
gi|310622190|gb|EFQ05680.1| ribosome-binding factor A [Faecalibacterium cf. prausnitzii
KLE1255]
Length = 130
Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats.
Identities = 22/115 (19%), Positives = 52/115 (45%), Gaps = 4/115 (3%)
Query: 14 RVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS-PDRVI 72
R+ ++++ ++ +I +D + +++++ + ++ DL VA VY+S+ P I
Sbjct: 8 RLAQDMKREIIAII--GRLKDPRLEGGLLTVTRLDVTPDLDVAKVYVSVMGREDGPKPAI 65
Query: 73 SALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALE 127
ALN +R + + + ++R P F D +N L+ + +
Sbjct: 66 EALNRAAGHVRTEVSKKM-HIRKAPRFIFVEDDGAAYAAHINELLRTLNVNGDAD 119
>gi|329896242|ref|ZP_08271420.1| Ribosome-binding factor A [gamma proteobacterium IMCC3088]
gi|328921913|gb|EGG29280.1| Ribosome-binding factor A [gamma proteobacterium IMCC3088]
Length = 132
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 7/119 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K R RVG+ ++ L +I E +D ++ +++I+ +S DL A V+ ++
Sbjct: 2 AKEYSRTERVGDMLQRELASLI-QTEMRDPRVA--MVNITGAQVSRDLSHARVFFTVLDA 58
Query: 66 VSPDR---VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+ + LN F+R +I + +R VP LRF +D S+ L L+ K
Sbjct: 59 DTAESAKPTTEVLNKASGFLRAQIAKD-STMRTVPSLRFVFDESVGRGRHLEGLIRRAK 116
>gi|329116513|ref|ZP_08245230.1| ribosome-binding factor A [Streptococcus parauberis NCFD 2020]
gi|326906918|gb|EGE53832.1| ribosome-binding factor A [Streptococcus parauberis NCFD 2020]
Length = 116
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 29/113 (25%), Positives = 54/113 (47%), Gaps = 6/113 (5%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD--V 66
+ R RVG E++ + ++ + +D + ++I+EV M DL A VY +L D
Sbjct: 3 NHRIDRVGMEIKREVNDIL-QKKVRDPRVQG--VTITEVQMLGDLSAAKVYYTLMSDLAS 59
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ + L I+ +G+SL + +P+L F D S+ K++ L+
Sbjct: 60 DNQKAQTGLEKATGTIKRELGKSL-TMYKIPDLIFEKDNSIAYGNKIDELLRN 111
>gi|125718689|ref|YP_001035822.1| ribosome-binding factor A [Streptococcus sanguinis SK36]
gi|323350350|ref|ZP_08086014.1| ribosome-binding factor A [Streptococcus sanguinis VMC66]
gi|166219412|sp|A3CQ17|RBFA_STRSV RecName: Full=Ribosome-binding factor A
gi|125498606|gb|ABN45272.1| Ribosome-binding factor A, putative [Streptococcus sanguinis SK36]
gi|322123423|gb|EFX95099.1| ribosome-binding factor A [Streptococcus sanguinis VMC66]
gi|324991729|gb|EGC23661.1| ribosome-binding factor A [Streptococcus sanguinis SK353]
gi|324992024|gb|EGC23946.1| ribosome-binding factor A [Streptococcus sanguinis SK405]
gi|324994117|gb|EGC26031.1| ribosome-binding factor A [Streptococcus sanguinis SK678]
gi|325686961|gb|EGD28985.1| ribosome-binding factor A [Streptococcus sanguinis SK72]
gi|325697664|gb|EGD39549.1| ribosome-binding factor A [Streptococcus sanguinis SK160]
gi|327459326|gb|EGF05672.1| ribosome-binding factor A [Streptococcus sanguinis SK1]
gi|327462406|gb|EGF08731.1| ribosome-binding factor A [Streptococcus sanguinis SK1057]
gi|327467108|gb|EGF12618.1| ribosome-binding factor A [Streptococcus sanguinis SK330]
gi|327472750|gb|EGF18177.1| ribosome-binding factor A [Streptococcus sanguinis SK408]
gi|332358016|gb|EGJ35849.1| ribosome-binding factor A [Streptococcus sanguinis SK1056]
gi|332362941|gb|EGJ40730.1| ribosome-binding factor A [Streptococcus sanguinis SK49]
gi|332364624|gb|EGJ42393.1| ribosome-binding factor A [Streptococcus sanguinis SK1059]
Length = 116
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 25/116 (21%), Positives = 58/116 (50%), Gaps = 6/116 (5%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD-- 65
N+ R RVG E++ + ++ + +D + ++I++V M DL +A VY ++ +
Sbjct: 3 NNFRTDRVGMEIKREVNEIL-QKKVRDPRVQG--VTITDVQMLGDLSMAKVYYTIMSNLA 59
Query: 66 VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+ + L I+ +G +L+ + +P+L F D S++ K++ ++ +
Sbjct: 60 SDNQKAQTGLEKATGTIKRELGHNLK-MYKIPDLTFVKDESIEYGNKIDQMLRDLE 114
>gi|114566434|ref|YP_753588.1| hypothetical protein Swol_0901 [Syntrophomonas wolfei subsp. wolfei
str. Goettingen]
gi|122318494|sp|Q0AYI7|RBFA_SYNWW RecName: Full=Ribosome-binding factor A
gi|114337369|gb|ABI68217.1| ribosome-binding factor A [Syntrophomonas wolfei subsp. wolfei str.
Goettingen]
Length = 122
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 33/116 (28%), Positives = 58/116 (50%), Gaps = 3/116 (2%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
+ RR R+ E+ L +I E +D I +SI+ + +S D A V IS+ D
Sbjct: 1 MSKRRQERMSVEIMRVLSQII-QEEIKDPRIEFKNLSITRIDLSNDYSHARVNISILGDE 59
Query: 67 -SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+ + AL +IR + + L+ +R+ PEL FR D S++ ++++L+ K
Sbjct: 60 IQREEAMKALQKAKGYIRSALAQQLK-VRHAPELEFRLDRSIEHGIRISSLLEEIK 114
>gi|15616981|ref|NP_240194.1| ribosome-binding factor A [Buchnera aphidicola str. APS
(Acyrthosiphon pisum)]
gi|219681734|ref|YP_002468120.1| ribosome-binding factor A [Buchnera aphidicola str. 5A
(Acyrthosiphon pisum)]
gi|257471434|ref|ZP_05635433.1| ribosome-binding factor A [Buchnera aphidicola str. LSR1
(Acyrthosiphon pisum)]
gi|11387026|sp|P57457|RBFA_BUCAI RecName: Full=Ribosome-binding factor A
gi|254789737|sp|B8D9G1|RBFA_BUCA5 RecName: Full=Ribosome-binding factor A
gi|25302100|pir||H84973 ribosome-binding factor A [imported] - Buchnera sp. (strain APS)
gi|10039046|dbj|BAB13080.1| ribosome-binding factor A [Buchnera aphidicola str. APS
(Acyrthosiphon pisum)]
gi|219624577|gb|ACL30732.1| ribosome-binding factor A [Buchnera aphidicola str. 5A
(Acyrthosiphon pisum)]
Length = 120
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 62/116 (53%), Gaps = 6/116 (5%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
K R+ R+ +E++ + +I + +D I + +I++SEV +S DL A +++S
Sbjct: 3 KLFNRSDRIAQELQKKIAAII-QHSLKDPRI-KTIITVSEVQVSKDLSYAQIFVSFLESD 60
Query: 67 SPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ ++V I+ LN +IR + + ++ LR VP + F +D S K++ ++
Sbjct: 61 NNEKVKKKITILNRASSYIRKLLCKRMK-LRIVPNIIFHHDDSFLKGNKISCILEN 115
>gi|300173101|ref|YP_003772267.1| ribosome-binding factor A [Leuconostoc gasicomitatum LMG 18811]
gi|299887480|emb|CBL91448.1| ribosome-binding factor A [Leuconostoc gasicomitatum LMG 18811]
Length = 117
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 29/111 (26%), Positives = 54/111 (48%), Gaps = 6/111 (5%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD--VS 67
+RA R+ +EV+ + ++L D + ++++ V +S DL++AT+Y S+ D
Sbjct: 5 QRAGRLAQEVQRDVTSLLLKR-INDPRVQD--VTVTSVELSGDLQIATIYYSILSDLASD 61
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ + L IR +G L + PEL+F D S+Q + L+
Sbjct: 62 GKKAQAGLEAASGLIRKELGSRLTVYK-TPELKFVRDQSVQYGNHIEDLIR 111
>gi|124007683|ref|ZP_01692386.1| ribosome-binding factor A [Microscilla marina ATCC 23134]
gi|123986805|gb|EAY26577.1| ribosome-binding factor A [Microscilla marina ATCC 23134]
Length = 128
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 3/119 (2%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
S+R + ++ L + E +D + ++I+ V ++ DL +A VY+S+
Sbjct: 1 MESKRQQKFARLIQKDLADIFQR-EVKD-IFKTHFVTITNVKVTPDLGIAYVYLSILAAS 58
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRN-LRYVPELRFRYDTSLQSYWKLNALMCLPKIPV 124
V+ N K IR + R ++N +R +PELRF D + K++ L IP
Sbjct: 59 DKQAVVDIAEDNNKMIRQVLARKIKNQVRAIPELRFFLDDTSDYVQKMDELFDNLDIPP 117
>gi|116492657|ref|YP_804392.1| ribosome-binding factor A [Pediococcus pentosaceus ATCC 25745]
gi|122265879|sp|Q03FS2|RBFA_PEDPA RecName: Full=Ribosome-binding factor A
gi|116102807|gb|ABJ67950.1| ribosome-binding factor A [Pediococcus pentosaceus ATCC 25745]
Length = 116
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 26/110 (23%), Positives = 51/110 (46%), Gaps = 6/110 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV--SP 68
R+ R+ +E+ + ++ +D + ++I+ V ++ DL+ A +Y S+ D
Sbjct: 6 RSDRLSQEIEKEVSDILRRR-VRDPRVEG--VTITGVDVTGDLQQAKIYYSILSDKASDD 62
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ + L IR +G L + PEL F D S+Q K++ L+
Sbjct: 63 QKTKAGLEKASGLIRKELGSRLSIYK-TPELSFIRDESVQYGDKIDQLLN 111
>gi|296877065|ref|ZP_06901106.1| ribosome-binding factor A [Streptococcus parasanguinis ATCC 15912]
gi|296431926|gb|EFH17732.1| ribosome-binding factor A [Streptococcus parasanguinis ATCC 15912]
Length = 116
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 29/111 (26%), Positives = 57/111 (51%), Gaps = 6/111 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD--VSP 68
R RVG E++ + ++ + +D + ++I++V M DL +A VY S+ D
Sbjct: 6 RTDRVGMEIKREVNEIL-QKKVRDPRVQG--VTITDVQMLGDLSMAKVYYSIMSDLASDN 62
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ + L I+ +GR+L+ L +P+L F D S++ K++A++
Sbjct: 63 QKAQTGLEKATGTIKRELGRNLK-LYKIPDLTFVKDESIEYGNKIDAMLRN 112
>gi|315222136|ref|ZP_07864045.1| ribosome-binding factor A [Streptococcus anginosus F0211]
gi|315188762|gb|EFU22468.1| ribosome-binding factor A [Streptococcus anginosus F0211]
Length = 121
Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 58/121 (47%), Gaps = 6/121 (4%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
MK N R RVG E++ + ++ + +D + I+I++V M DL +A VY
Sbjct: 1 MKGDIMANQFRVDRVGMEIKREVNEIL-QKKVRDPRVQG--ITITDVQMLGDLSMAKVYY 57
Query: 61 SLPLD--VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+L + ++ L I+ +G +L+ + +P+L F D S++ K++ ++
Sbjct: 58 TLMSNLASEQEKAQIGLEKAKGTIKRELGHNLK-MYKIPDLTFIKDESIEYGNKIDQMLR 116
Query: 119 L 119
Sbjct: 117 D 117
>gi|148657851|ref|YP_001278056.1| ribosome-binding factor A [Roseiflexus sp. RS-1]
gi|172048090|sp|A5UZQ3|RBFA_ROSS1 RecName: Full=Ribosome-binding factor A
gi|148569961|gb|ABQ92106.1| ribosome-binding factor A [Roseiflexus sp. RS-1]
Length = 130
Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 4/118 (3%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD-VS 67
S+R ++G E++ L VI E +D + ++ V ++ DL++A V IS+
Sbjct: 2 SKRTEQLGHEIQRILGEVI-QYELKDPRVG--FATVVGVEVTADLQIARVRISVMGTPDE 58
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
++AL F+R R+ L LR+VPELR DTS+ ++ L+ A
Sbjct: 59 RRETMAALERARGFLRRRLAEELNYLRFVPELRLILDTSVDYSLHIDELLRRAAEERA 116
>gi|194366587|ref|YP_002029197.1| ribosome-binding factor A [Stenotrophomonas maltophilia R551-3]
gi|259552073|sp|B4SQR9|RBFA_STRM5 RecName: Full=Ribosome-binding factor A
gi|194349391|gb|ACF52514.1| ribosome-binding factor A [Stenotrophomonas maltophilia R551-3]
Length = 127
Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats.
Identities = 28/114 (24%), Positives = 55/114 (48%), Gaps = 4/114 (3%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
PK R RV ++R L ++ N R +S+S+V ++ D+ A V+++ +
Sbjct: 2 PKTFHRTDRVSAQLRRELGTLVHNAV---REHGLPSVSVSDVEITRDMAHAKVFVTALMP 58
Query: 66 VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
++ L +R + R+++ LR+VPEL F YD S+ ++ ++
Sbjct: 59 ERSAEAVAGLKELGYRLRMDLARAMK-LRHVPELHFHYDDSVDRGEHIDNILRD 111
>gi|126662574|ref|ZP_01733573.1| ribosome-binding factor A [Flavobacteria bacterium BAL38]
gi|126625953|gb|EAZ96642.1| ribosome-binding factor A [Flavobacteria bacterium BAL38]
Length = 130
Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 63/120 (52%), Gaps = 2/120 (1%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
+ R ++G +++ L+ ++ E + I+ VIS+S+V ++ DL +A V++S+
Sbjct: 1 METNRQKKIGALLQNDLVSIL-QGEIRKNNINNLVISVSKVNVTSDLSIAKVHLSVFPTD 59
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRN-LRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
+++A+ N I+ + + ++N LR VP L F D SL K++ + + P+
Sbjct: 60 KAPEILAAVKSNAPLIKHDLAQRVKNQLRKVPNLIFYIDDSLDYIEKIDKALTGDENPIE 119
>gi|313885308|ref|ZP_07819059.1| ribosome-binding factor A [Eremococcus coleocola ACS-139-V-Col8]
gi|312619414|gb|EFR30852.1| ribosome-binding factor A [Eremococcus coleocola ACS-139-V-Col8]
Length = 116
Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats.
Identities = 29/113 (25%), Positives = 57/113 (50%), Gaps = 6/113 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD--VSP 68
R RV +E+ + ++L E +D + ++I++V ++ DL+ AT+Y S D
Sbjct: 5 RVGRVRQEILREVNEILLR-EIKDPRVEG--VTITDVDLTGDLQHATIYYSTLSDLAGQR 61
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+ + L +R +G+ L+ + PE+RF D S+ K+++L+ K
Sbjct: 62 QKQQAGLEAVTGKVRSELGKRLKIYK-TPEIRFERDASVDYGNKIDSLLNQLK 113
>gi|254516616|ref|ZP_05128675.1| ribosome-binding factor A [gamma proteobacterium NOR5-3]
gi|219675039|gb|EED31406.1| ribosome-binding factor A [gamma proteobacterium NOR5-3]
Length = 157
Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats.
Identities = 34/123 (27%), Positives = 59/123 (47%), Gaps = 7/123 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K R RVG+ +R L +I+ E +D + ++SI+ V +S D+ A V+ +L
Sbjct: 2 AKEFSRTERVGDYLRRELA-LIIQREVRDPRLG--MVSITAVDVSRDISHARVHFTLLGC 58
Query: 66 VSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
+ + LN F+R + R ++R VP+LRF +D+S+ L AL+ +
Sbjct: 59 DTAEEAKPSTDVLNKAAGFLRSALARD-ASMRSVPKLRFVFDSSIGRGRDLEALIHRART 117
Query: 123 PVA 125
Sbjct: 118 ADD 120
>gi|121594898|ref|YP_986794.1| ribosome-binding factor A [Acidovorax sp. JS42]
gi|171769419|sp|A1W8Z3|RBFA_ACISJ RecName: Full=Ribosome-binding factor A
gi|120606978|gb|ABM42718.1| ribosome-binding factor A [Acidovorax sp. JS42]
Length = 125
Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 56/119 (47%), Gaps = 6/119 (5%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
M K + R +V ++++ L +I + +D I ++++ V ++ D A V+
Sbjct: 1 MAAKKSSSPNRGFKVADQIQRDLTELI--RDLKDPRIG--MVTLQGVEVTPDYAHAKVFF 56
Query: 61 SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
S+ + + ALN F+R + + L ++ VP L F YD + + +NAL+
Sbjct: 57 SVLIG-DGEASEEALNQAAGFLRNGLFKRL-HIHTVPTLHFVYDRTTEKAADMNALIAR 113
>gi|331006258|ref|ZP_08329578.1| Ribosome-binding factor A [gamma proteobacterium IMCC1989]
gi|330419947|gb|EGG94293.1| Ribosome-binding factor A [gamma proteobacterium IMCC1989]
Length = 130
Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats.
Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 7/115 (6%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL- 64
K R+ RV + ++ L I E +D + ++++++V ++ D+ A VY++
Sbjct: 2 AKEFSRSDRVADAIQRILATTI-RQEVRDPRVG--MVNVNDVTVTRDMAYAKVYVTFVGR 58
Query: 65 --DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
D ALN F+RG + + L ++R P+LRF YD + KL+ L+
Sbjct: 59 DSDTESREAADALNHAAGFLRGIVAKEL-DIRITPKLRFIYDKTSVEGQKLSNLI 112
>gi|115466270|ref|NP_001056734.1| Os06g0137600 [Oryza sativa Japonica Group]
gi|55296456|dbj|BAD68652.1| ribosome-binding factor A protein-like [Oryza sativa Japonica
Group]
gi|55296997|dbj|BAD68472.1| ribosome-binding factor A protein-like [Oryza sativa Japonica
Group]
gi|113594774|dbj|BAF18648.1| Os06g0137600 [Oryza sativa Japonica Group]
gi|125553968|gb|EAY99573.1| hypothetical protein OsI_21548 [Oryza sativa Indica Group]
gi|125595983|gb|EAZ35763.1| hypothetical protein OsJ_20053 [Oryza sativa Japonica Group]
gi|215701451|dbj|BAG92875.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215704652|dbj|BAG94280.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765427|dbj|BAG87124.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 209
Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats.
Identities = 32/124 (25%), Positives = 63/124 (50%), Gaps = 13/124 (10%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLIS-----------RDVISISEVCMSVDLRVATV 58
RR V ++++ L ++ + R + + +I++V +S DL+V V
Sbjct: 45 RRVRMVAKQIQRELADMLTRDPVLQRAVLPEAALGADQYLSSLTTIADVELSNDLQVCKV 104
Query: 59 YISLPLDVSPDRV-ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
Y+S+ D +V I+ L K++R +IG+ ++ LR PE+RF D S++ ++ A++
Sbjct: 105 YVSVFGDERGKKVAIAGLKAKTKYVRSQIGKRMK-LRLTPEIRFIEDESMERGSRILAIL 163
Query: 118 CLPK 121
K
Sbjct: 164 DKLK 167
>gi|325695176|gb|EGD37077.1| ribosome-binding factor A [Streptococcus sanguinis SK150]
gi|332366404|gb|EGJ44155.1| ribosome-binding factor A [Streptococcus sanguinis SK355]
Length = 116
Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats.
Identities = 25/114 (21%), Positives = 57/114 (50%), Gaps = 6/114 (5%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD-- 65
N+ R RVG E++ + ++ + +D + ++I++V M DL +A VY ++ +
Sbjct: 3 NNFRTDRVGMEIKREVNEIL-QKKVRDPRVQG--VTITDVQMLGDLSMAKVYYTIMSNLA 59
Query: 66 VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ + L I+ +G +L+ + +P+L F D S++ K++ ++
Sbjct: 60 SDNQKAQTGLEKATGTIKRELGHNLK-MYKIPDLTFVKDESIEYGNKIDQMLRD 112
>gi|327490541|gb|EGF22322.1| ribosome-binding factor A [Streptococcus sanguinis SK1058]
Length = 116
Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats.
Identities = 25/114 (21%), Positives = 57/114 (50%), Gaps = 6/114 (5%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD-- 65
N+ R RVG E++ + ++ + +D + ++I++V M DL +A VY ++ +
Sbjct: 3 NNFRTDRVGMEIKREVNEIL-QKKVRDPRVQG--VTITDVQMLGDLSMAKVYYTIMSNLA 59
Query: 66 VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ + L I+ +G +L+ + +P+L F D S++ K++ ++
Sbjct: 60 SDNQKAQTGLEKATGTIKRELGHNLK-MYKIPDLTFVKDESIEYGNKIDQMLRN 112
>gi|295426204|ref|ZP_06818866.1| ribosome-binding factor A [Lactobacillus amylolyticus DSM 11664]
gi|295064113|gb|EFG55059.1| ribosome-binding factor A [Lactobacillus amylolyticus DSM 11664]
Length = 120
Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 56/121 (46%), Gaps = 7/121 (5%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD--VS 67
R RV E+ L ++ N +D +S ++I+ V + DL ATVY SL +
Sbjct: 3 HRIGRVEGEILRELTKILQKN-IRDPRLSE--VTITAVECTNDLSYATVYYSLLTEDPEK 59
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALE 127
V L +R +G+ L + VPEL F++D S++ K++ L+ K E
Sbjct: 60 EQEVAEGLEKAKGMMRHLLGQVLTVYK-VPELIFKHDNSVKYGSKIDRLIAEVK-KQDAE 117
Query: 128 K 128
+
Sbjct: 118 R 118
>gi|73541715|ref|YP_296235.1| ribosome-binding factor A [Ralstonia eutropha JMP134]
gi|123624724|sp|Q46ZP2|RBFA_RALEJ RecName: Full=Ribosome-binding factor A
gi|72119128|gb|AAZ61391.1| ribosome-binding factor A [Ralstonia eutropha JMP134]
Length = 122
Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats.
Identities = 25/110 (22%), Positives = 56/110 (50%), Gaps = 5/110 (4%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
S R LR+ ++++ L +I E +D + ++++ V ++ D A VY ++ L P
Sbjct: 8 SSRNLRISDQIQKELAEMIQR-EIRDPRLG--LVTLQSVALTPDYAHAKVYFTV-LGAEP 63
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ + L ++ + + L ++ VP L F +DTS++ +++ L+
Sbjct: 64 EVAAAILKEKAGYLHSLLFKRL-HIHTVPTLHFHHDTSVEHAIEMSKLIN 112
>gi|331265781|ref|YP_004325411.1| ribosome-binding factor A [Streptococcus oralis Uo5]
gi|326682453|emb|CBZ00070.1| ribosome-binding factor A [Streptococcus oralis Uo5]
Length = 116
Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 28/111 (25%), Positives = 56/111 (50%), Gaps = 6/111 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD--VSP 68
R RVG E++ + ++ + +D + ++I++V M DL VA VY ++ +
Sbjct: 6 RTDRVGMEIKREVNEIL-QKKVRDPRVQG--VTITDVQMLGDLSVAKVYYTILSNLASDS 62
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ L I+ +GR+L+ L +P+L F D S++ K++A++
Sbjct: 63 QKAQIGLEKATGTIKRELGRNLK-LYKIPDLTFVKDESIEYGNKIDAMLRN 112
>gi|167587337|ref|ZP_02379725.1| ribosome-binding factor A [Burkholderia ubonensis Bu]
Length = 132
Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 57/117 (48%), Gaps = 5/117 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
R +++ ++++ L +I+ E +D I +++I V ++ D A VY + P++
Sbjct: 10 RNVQIADQIQRDLSELIMR-EVKDPRIG--IVTIQSVELTPDYAHAKVYFTALTG-DPEK 65
Query: 71 VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALE 127
ALN + + + L ++ VP L F YD +++ +++ L+ AL+
Sbjct: 66 TQEALNHASGHLHNLLFKRL-HIHTVPTLHFHYDQTIEKAVEMSRLIKEANSTRALD 121
>gi|226529836|ref|NP_001149358.1| LOC100282982 [Zea mays]
gi|195626630|gb|ACG35145.1| ribosome-binding factor A [Zea mays]
Length = 206
Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 33/131 (25%), Positives = 63/131 (48%), Gaps = 13/131 (9%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDR-----------LISRDVISISEVCMSVDLRVATV 58
RR V ++++ L ++ + R + +I++V +S DL+V V
Sbjct: 43 RRVRMVAKQIQRELADMLTRDPVLQRAVLPEAALGADRYLSSLTTIADVELSNDLQVCKV 102
Query: 59 YISLPLDVSPDRV-ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
Y+S+ D +V I L K++R +IGR ++ LR PE+RF D S++ ++ A++
Sbjct: 103 YVSVFGDERGKKVAIEGLKAKTKYVRSQIGRRMK-LRLTPEIRFIEDESMERGSRILAIL 161
Query: 118 CLPKIPVALEK 128
K ++
Sbjct: 162 DKLKEEREQQE 172
>gi|42519358|ref|NP_965288.1| ribosome-binding factor A [Lactobacillus johnsonii NCC 533]
gi|227890223|ref|ZP_04008028.1| ribosome-binding factor A [Lactobacillus johnsonii ATCC 33200]
gi|268319265|ref|YP_003292921.1| hypothetical protein FI9785_780 [Lactobacillus johnsonii FI9785]
gi|61215123|sp|Q74IS9|RBFA_LACJO RecName: Full=Ribosome-binding factor A
gi|41583646|gb|AAS09254.1| ribosome-binding factor A [Lactobacillus johnsonii NCC 533]
gi|227849225|gb|EEJ59311.1| ribosome-binding factor A [Lactobacillus johnsonii ATCC 33200]
gi|262397640|emb|CAX66654.1| rbfA [Lactobacillus johnsonii FI9785]
gi|329667123|gb|AEB93071.1| ribosome-binding factor A [Lactobacillus johnsonii DPC 6026]
Length = 123
Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 7/121 (5%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV--S 67
R RV E+ L ++ + +D ++ ++I+ V + DL ATVY S+ D
Sbjct: 3 HRIGRVEGEILRELTKIL-RKDIRDPRLND--VTITAVECTNDLSYATVYYSMLTDDPAK 59
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALE 127
V L+ +R +G++L + VPEL F+ DTS+ K++ L+ K E
Sbjct: 60 EKEVAEGLDKAKGMMRHLLGQTLTVYK-VPELIFKRDTSVAYGSKIDKLINQVK-KQDQE 117
Query: 128 K 128
+
Sbjct: 118 R 118
>gi|270158097|ref|ZP_06186754.1| ribosome-binding factor A [Legionella longbeachae D-4968]
gi|269990122|gb|EEZ96376.1| ribosome-binding factor A [Legionella longbeachae D-4968]
Length = 108
Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 33/110 (30%), Positives = 55/110 (50%), Gaps = 4/110 (3%)
Query: 18 EVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNC 77
++ L +I E +D + ++IS V ++ DL A VY ++ D + V S LN
Sbjct: 1 MIQRKLAQIIPK-EVKDPRL-TGFVTISAVKVAADLGHAKVYFTVLND-DREMVASILNA 57
Query: 78 NIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALE 127
++R + RS+ LR VP+L F YD S++ +L+ L+ P E
Sbjct: 58 ASSYLRSVLARSI-TLRTVPQLHFVYDESIEYGQRLSRLIDKVAPPDDHE 106
>gi|241889632|ref|ZP_04776930.1| ribosome-binding factor A [Gemella haemolysans ATCC 10379]
gi|241863254|gb|EER67638.1| ribosome-binding factor A [Gemella haemolysans ATCC 10379]
Length = 119
Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats.
Identities = 20/110 (18%), Positives = 55/110 (50%), Gaps = 5/110 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV-SPD 69
R R+ E+++ + +V+ + ++ + ++++EV ++ D A V+ ++ +
Sbjct: 5 RVNRLAEQIKKEITYVLA-TKVKNHDLG--FVTVTEVALTGDYSQAKVFYTVLGGEREKE 61
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ A F++ + + ++ +R PEL F+YDT+ + + +L+
Sbjct: 62 KTKEAFKKIKGFVKSEVAKKIK-IRKFPELIFQYDTTAEYALHIESLIAS 110
>gi|169832550|ref|YP_001694044.1| ribosome-binding factor A [Streptococcus pneumoniae Hungary19A-6]
gi|225854098|ref|YP_002735610.1| ribosome-binding factor A [Streptococcus pneumoniae JJA]
gi|303255248|ref|ZP_07341321.1| ribosome-binding factor A [Streptococcus pneumoniae BS455]
gi|303260046|ref|ZP_07346019.1| ribosome-binding factor A [Streptococcus pneumoniae SP-BS293]
gi|303261230|ref|ZP_07347178.1| ribosome-binding factor A [Streptococcus pneumoniae SP14-BS292]
gi|303263895|ref|ZP_07349816.1| ribosome-binding factor A [Streptococcus pneumoniae BS397]
gi|303267069|ref|ZP_07352940.1| ribosome-binding factor A [Streptococcus pneumoniae BS457]
gi|303269284|ref|ZP_07355058.1| ribosome-binding factor A [Streptococcus pneumoniae BS458]
gi|306830056|ref|ZP_07463242.1| ribosome-binding factor A [Streptococcus mitis ATCC 6249]
gi|238688274|sp|B1IA81|RBFA_STRPI RecName: Full=Ribosome-binding factor A
gi|254789768|sp|C1CCT9|RBFA_STRZJ RecName: Full=Ribosome-binding factor A
gi|168995052|gb|ACA35664.1| ribosome-binding factor A [Streptococcus pneumoniae Hungary19A-6]
gi|225722764|gb|ACO18617.1| ribosome-binding factor A [Streptococcus pneumoniae JJA]
gi|301801438|emb|CBW34125.1| ribosome-binding factor A [Streptococcus pneumoniae INV200]
gi|302597789|gb|EFL64862.1| ribosome-binding factor A [Streptococcus pneumoniae BS455]
gi|302637364|gb|EFL67851.1| ribosome-binding factor A [Streptococcus pneumoniae SP14-BS292]
gi|302638741|gb|EFL69203.1| ribosome-binding factor A [Streptococcus pneumoniae SP-BS293]
gi|302641181|gb|EFL71554.1| ribosome-binding factor A [Streptococcus pneumoniae BS458]
gi|302643397|gb|EFL73673.1| ribosome-binding factor A [Streptococcus pneumoniae BS457]
gi|302646300|gb|EFL76526.1| ribosome-binding factor A [Streptococcus pneumoniae BS397]
gi|304427769|gb|EFM30863.1| ribosome-binding factor A [Streptococcus mitis ATCC 6249]
Length = 116
Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats.
Identities = 28/111 (25%), Positives = 56/111 (50%), Gaps = 6/111 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD--VSP 68
R RVG E++ + ++ + +D + ++I++V M DL VA VY ++ +
Sbjct: 6 RTDRVGMEIKREVNEIL-QKKVRDPRVQG--VTITDVQMLGDLSVAKVYYTILSNLASDN 62
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+V L I+ +GR+L+ L +P+L F D S++ K++ ++
Sbjct: 63 QKVQIGLEKATGTIKRELGRNLK-LYKIPDLTFVKDESIEYGNKIDEMLRN 112
>gi|258404626|ref|YP_003197368.1| ribosome-binding factor A [Desulfohalobium retbaense DSM 5692]
gi|257796853|gb|ACV67790.1| ribosome-binding factor A [Desulfohalobium retbaense DSM 5692]
Length = 120
Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats.
Identities = 34/104 (32%), Positives = 61/104 (58%), Gaps = 5/104 (4%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
+RRA R+G+ + + +++ E +D + +++IS V M+ +L+VA V + P
Sbjct: 4 GTTRRAQRMGDTIMREIGHLLV-EEAKDPRL--QLVTISGVRMNRNLQVAEVLFTHPEGR 60
Query: 67 SPD-RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQS 109
+ +I+AL F+R +G+ LR LR+VP+LRF +DT L+
Sbjct: 61 DKEQEIITALESASGFLRTALGKRLR-LRFVPQLRFTWDTFLED 103
>gi|270290310|ref|ZP_06196535.1| ribosome-binding factor A [Pediococcus acidilactici 7_4]
gi|304384871|ref|ZP_07367217.1| ribosome-binding factor A [Pediococcus acidilactici DSM 20284]
gi|270281091|gb|EFA26924.1| ribosome-binding factor A [Pediococcus acidilactici 7_4]
gi|304329065|gb|EFL96285.1| ribosome-binding factor A [Pediococcus acidilactici DSM 20284]
Length = 116
Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats.
Identities = 27/110 (24%), Positives = 51/110 (46%), Gaps = 6/110 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV--SP 68
RA R+ +E+ + ++ +D + ++I+ V ++ DL+ A +Y S+ D
Sbjct: 6 RADRLSQEIEKEVSDILRRR-VRDPRVQG--VTITGVDVTGDLQQAKIYYSILSDKASDD 62
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
++ L IR +G L + PEL F D S+Q K++ L+
Sbjct: 63 EKTRKGLEKASGLIRKELGSRLSIYK-TPELIFERDHSVQYGEKIDQLIN 111
>gi|322387182|ref|ZP_08060792.1| ribosome-binding factor A [Streptococcus infantis ATCC 700779]
gi|321141711|gb|EFX37206.1| ribosome-binding factor A [Streptococcus infantis ATCC 700779]
Length = 116
Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats.
Identities = 26/111 (23%), Positives = 54/111 (48%), Gaps = 6/111 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD--VSP 68
R RVG E++ + ++ + +D + ++I++V M DL VA VY ++ +
Sbjct: 6 RTDRVGMEIKREVNEIL-QKKVRDPRVQG--VTITDVQMLGDLSVAKVYYTILSNLASDN 62
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ L I+ +G +L+ L +P+L F D S++ K++ ++
Sbjct: 63 QKAQIGLEKATGTIKRELGHNLK-LYKIPDLTFVKDESIEYGNKIDEMLRN 112
>gi|325688737|gb|EGD30746.1| ribosome-binding factor A [Streptococcus sanguinis SK115]
Length = 116
Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats.
Identities = 25/116 (21%), Positives = 58/116 (50%), Gaps = 6/116 (5%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD-- 65
N+ R RVG E++ + ++ + +D + ++I++V M DL +A VY ++ +
Sbjct: 3 NNFRTDRVGMEIKREVNEIL-QKKVRDPRVQG--VTITDVQMLGDLSMAKVYYTIMSNLA 59
Query: 66 VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+ + L I+ +G +L+ + +P+L F D S++ K++ ++ +
Sbjct: 60 SDNQKAQTGLEKATGTIKRELGHNLK-MYKIPDLIFVKDESIEYGNKIDQMLRDLE 114
>gi|53804605|ref|YP_113776.1| ribosome-binding factor A [Methylococcus capsulatus str. Bath]
gi|61214821|sp|Q609C1|RBFA_METCA RecName: Full=Ribosome-binding factor A
gi|53758366|gb|AAU92657.1| ribosome-binding factor A [Methylococcus capsulatus str. Bath]
Length = 119
Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats.
Identities = 27/115 (23%), Positives = 56/115 (48%), Gaps = 5/115 (4%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL- 64
P+ R+ RV +++ + L + ++++S+V +S DL VA V+++
Sbjct: 2 PREFSRSDRVSAQMQREIAE-FLRTGIDAPELG--MVTVSDVDVSRDLAVAKVFVTFLGA 58
Query: 65 DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ + L +R +GR +R +R +PE+RF YD SL+ ++ ++
Sbjct: 59 RLETRAAVKRLGEFAPQLRQVLGRRMR-MRIIPEIRFAYDDSLERGLHMDEVLRS 112
>gi|312867882|ref|ZP_07728087.1| ribosome-binding factor A [Streptococcus parasanguinis F0405]
gi|322391038|ref|ZP_08064542.1| ribosome-binding factor A [Streptococcus parasanguinis ATCC 903]
gi|311096637|gb|EFQ54876.1| ribosome-binding factor A [Streptococcus parasanguinis F0405]
gi|321142268|gb|EFX37742.1| ribosome-binding factor A [Streptococcus parasanguinis ATCC 903]
Length = 116
Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats.
Identities = 28/111 (25%), Positives = 56/111 (50%), Gaps = 6/111 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD--VSP 68
R RVG E++ + ++ + +D + ++I++V M DL +A VY S+ D
Sbjct: 6 RTDRVGMEIKREVNEIL-QKKVRDPRVQG--VTITDVQMLGDLSMAKVYYSIMSDLASDN 62
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ + L I+ +GR+L+ L +P+L F D S++ K++ ++
Sbjct: 63 QKAQTGLEKATGTIKRELGRNLK-LYKIPDLTFVKDESIEYGNKIDEMLRN 112
>gi|225027051|ref|ZP_03716243.1| hypothetical protein EUBHAL_01307 [Eubacterium hallii DSM 3353]
gi|224955515|gb|EEG36724.1| hypothetical protein EUBHAL_01307 [Eubacterium hallii DSM 3353]
Length = 128
Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats.
Identities = 32/110 (29%), Positives = 53/110 (48%), Gaps = 4/110 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
KNS + R+ EV L +I E +D I+ + S+ V ++ DL+ YIS+ D
Sbjct: 3 KNSVKNTRINSEVLKELSRIISR-EIKDPRIAP-MTSVVSVEVAPDLKTCKAYISVLGDK 60
Query: 67 SPDR-VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNA 115
+ L +IR + RS+ NLR P++RF D S++ ++
Sbjct: 61 EAQESTLEGLRSAHGYIRRELARSI-NLRNTPDVRFILDQSIEYGVSMSK 109
>gi|190575261|ref|YP_001973106.1| ribosome-binding factor A [Stenotrophomonas maltophilia K279a]
gi|254521412|ref|ZP_05133467.1| ribosome-binding factor A [Stenotrophomonas sp. SKA14]
gi|259552102|sp|B2FN89|RBFA_STRMK RecName: Full=Ribosome-binding factor A
gi|190013183|emb|CAQ46816.1| putative ribosome-binding factor A [Stenotrophomonas maltophilia
K279a]
gi|219719003|gb|EED37528.1| ribosome-binding factor A [Stenotrophomonas sp. SKA14]
Length = 127
Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats.
Identities = 28/114 (24%), Positives = 55/114 (48%), Gaps = 4/114 (3%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
PK R RV ++R L ++ N R +S+S+V ++ D+ A V+++ +
Sbjct: 2 PKTFHRTDRVSAQLRRELGTLVHNAV---REHGLPSVSVSDVEITRDMAHAKVFVTALMP 58
Query: 66 VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
++ L +R + R+++ LR+VPEL F YD S+ ++ ++
Sbjct: 59 ERSAEAVAGLKELGYRLRMDLARAMK-LRHVPELHFHYDDSVDRGEHIDNILRD 111
>gi|329767068|ref|ZP_08258596.1| ribosome-binding factor A [Gemella haemolysans M341]
gi|328837793|gb|EGF87418.1| ribosome-binding factor A [Gemella haemolysans M341]
Length = 122
Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats.
Identities = 23/120 (19%), Positives = 58/120 (48%), Gaps = 6/120 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV-SPD 69
R R+ E+++ + +V+ + ++ + ++++EV ++ D A V+ ++ +
Sbjct: 5 RVNRLAEQIKKEITYVLA-TKVKNHDLG--FVTVTEVALTGDYSQAKVFYTVLGGEREKE 61
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL-PKIPVALEK 128
+ A F++ + + ++ +R PEL F+YDT+ + + +L+ K EK
Sbjct: 62 KTKEAFKKIKGFVKSEVAKKIK-IRKFPELIFQYDTTAEYALHIESLIASVSKKEKDEEK 120
>gi|296111955|ref|YP_003622337.1| ribosome-binding factor A [Leuconostoc kimchii IMSNU 11154]
gi|295833487|gb|ADG41368.1| ribosome-binding factor A [Leuconostoc kimchii IMSNU 11154]
Length = 117
Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats.
Identities = 31/111 (27%), Positives = 56/111 (50%), Gaps = 6/111 (5%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP- 68
+RA R+ +EV+ + ++L D + I+I+ V +S DL++AT+Y S D++
Sbjct: 5 QRAGRLAQEVQRDVTDLLLKR-INDPRVQD--ITITSVELSGDLQIATIYYSTLSDLASV 61
Query: 69 -DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ + L+ IR +G L + PEL+F D S+Q + L+
Sbjct: 62 GQKAQAGLDAASGLIRKELGSRLTVYK-TPELKFVRDQSIQYGNHIEDLIR 111
>gi|172045663|sp|A8EYY5|RBFA_RICCK RecName: Full=Ribosome-binding factor A
Length = 129
Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats.
Identities = 27/125 (21%), Positives = 58/125 (46%), Gaps = 2/125 (1%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
MK N+ R ++ + L+ ++ + D + ++I++V ++ DL++A Y
Sbjct: 1 MKKLTKTNAHRQQKLASIINEVLIEILRRGKMLDIRLFNCPLAITKVIVTADLKIANCYF 60
Query: 61 SLPLDV-SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ D ++ ALN + IR + + N+++ PE+RF YD + K+ L+
Sbjct: 61 LPFNTKLTIDDIMDALNNSKNAIRNFVTNKI-NMKFSPEIRFHYDHGFDNAIKVEKLLKN 119
Query: 120 PKIPV 124
+
Sbjct: 120 ISLKR 124
>gi|146328987|ref|YP_001208966.1| ribosome-binding factor A [Dichelobacter nodosus VCS1703A]
gi|166218436|sp|A5EWY8|RBFA_DICNV RecName: Full=Ribosome-binding factor A
gi|146232457|gb|ABQ13435.1| ribosome-binding factor A [Dichelobacter nodosus VCS1703A]
Length = 122
Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats.
Identities = 29/110 (26%), Positives = 57/110 (51%), Gaps = 6/110 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPD- 69
R R+GE++R L ++ + ++S + V ++ DL A VY++ LD +
Sbjct: 7 RTRRIGEQMRRDLAQALV-DIVHHP--HASLLSFTAVHLTRDLSFAKVYVTHVLDNEEER 63
Query: 70 -RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+++ LN R + ++L ++R VPEL+F YD S++ ++ L+
Sbjct: 64 SELVAELNAKAGQFRHYLAKNL-SIRKVPELQFYYDQSVEYGARMEQLLT 112
>gi|332638627|ref|ZP_08417490.1| ribosome-binding factor A [Weissella cibaria KACC 11862]
Length = 118
Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats.
Identities = 25/118 (21%), Positives = 57/118 (48%), Gaps = 6/118 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
+ + R R+ +E++ + ++L +D + ++++ V ++ DL+ A +Y S+ +
Sbjct: 2 AQQNFRVGRLEQEIQREVNDLLLKR-IRDPRVEG--VTVTGVEVTGDLQQAKIYYSVLSE 58
Query: 66 VSP--DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
++ + + L IR +G L + PEL+F D S+Q K++ L+
Sbjct: 59 LASVNQKAAAGLEAATGLIRKELGSRLAIYK-TPELKFVKDESVQYGNKIDDLIRQLH 115
>gi|332519405|ref|ZP_08395872.1| ribosome-binding factor A [Lacinutrix algicola 5H-3-7-4]
gi|332045253|gb|EGI81446.1| ribosome-binding factor A [Lacinutrix algicola 5H-3-7-4]
Length = 133
Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 60/122 (49%), Gaps = 10/122 (8%)
Query: 7 KNSRRALRVGEEVRSALMWVIL----NNEFQDRLISRDVISISEVCMSVDLRVATVYISL 62
+ S+R ++G ++ L+ ++ + +IS+S+V ++VDL VA VY+S+
Sbjct: 4 EESQRQKKIGSVLQRDLVDILQTAATQGGMR-----GVIISVSKVSVTVDLSVAKVYLSI 58
Query: 63 PLDVSPDRVISALNCNIKFIRGRIGRSLRN-LRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+ ++ + N FIR + + +N LR +P+L F D SL+ K+ +
Sbjct: 59 FPNDKAKELVEGIKSNQPFIRHELAKRTKNQLRRMPQLYFFVDDSLEHIDKIEQSLKRED 118
Query: 122 IP 123
P
Sbjct: 119 NP 120
>gi|167625058|ref|YP_001675352.1| ribosome-binding factor A [Shewanella halifaxensis HAW-EB4]
gi|189039560|sp|B0TQA1|RBFA_SHEHH RecName: Full=Ribosome-binding factor A
gi|167355080|gb|ABZ77693.1| ribosome-binding factor A [Shewanella halifaxensis HAW-EB4]
Length = 142
Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 62/116 (53%), Gaps = 6/116 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K R R+ ++++ L V+ + +D I +++++V +S DL A VY++ +
Sbjct: 2 AKEFSRTRRIAQQLQQELAQVLQR-DMKDPRIG--FVTVNDVDVSRDLSYAKVYVTFFEE 58
Query: 66 VSP--DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
++ ++AL+ +IR + ++ LR +PELRF YD+SL +++ L+
Sbjct: 59 DEKLVEQKVAALDAAAGYIRSLVAGRMK-LRVMPELRFIYDSSLVEGMRMSNLVSR 113
>gi|157962877|ref|YP_001502911.1| ribosome-binding factor A [Shewanella pealeana ATCC 700345]
gi|189039561|sp|A8H739|RBFA_SHEPA RecName: Full=Ribosome-binding factor A
gi|157847877|gb|ABV88376.1| ribosome-binding factor A [Shewanella pealeana ATCC 700345]
Length = 142
Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 62/116 (53%), Gaps = 6/116 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K R R+ ++++ L V+ + +D I +++++V +S DL A VY++ +
Sbjct: 2 AKEFSRTRRIAQQLQQELAQVLQR-DMKDPRIG--FVTVNDVDVSRDLSYAKVYVTFFEE 58
Query: 66 VSP--DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
++ ++AL+ +IR + ++ LR +PELRF YD+SL +++ L+
Sbjct: 59 DEKLVEQKVAALDAAAGYIRSLVAGRMK-LRVMPELRFIYDSSLVEGMRMSNLVSR 113
>gi|241895998|ref|ZP_04783294.1| ribosome-binding factor A [Weissella paramesenteroides ATCC 33313]
gi|241870729|gb|EER74480.1| ribosome-binding factor A [Weissella paramesenteroides ATCC 33313]
Length = 117
Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats.
Identities = 26/118 (22%), Positives = 58/118 (49%), Gaps = 6/118 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
+ + R R+ +E++ + ++L +D I ++++ V ++ DL+ A ++ S+ +
Sbjct: 2 AQQNFRVGRLEQEIQREINDLLLKR-IRDPRIEG--VTVTGVEVTGDLQQAKIFYSVLSE 58
Query: 66 VSP--DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
++ + L+ IR +G LR + PEL+F D S+Q K++ L+
Sbjct: 59 LASVNKKAAEGLDAATGLIRKELGSRLRIYK-TPELKFVKDESVQYGNKIDDLIRQLH 115
>gi|322391416|ref|ZP_08064886.1| ribosome-binding factor A [Streptococcus peroris ATCC 700780]
gi|321145842|gb|EFX41233.1| ribosome-binding factor A [Streptococcus peroris ATCC 700780]
Length = 116
Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats.
Identities = 27/111 (24%), Positives = 54/111 (48%), Gaps = 6/111 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD--VSP 68
R RVG E++ + ++ + +D + ++I++V M DL VA VY ++ D
Sbjct: 6 RTDRVGMEIKREVNEIL-QKKVRDPRVQG--VTITDVQMLGDLSVAKVYYTILSDLASDN 62
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ L I+ +G +L+ L +P+L F D S++ K++ ++
Sbjct: 63 QKAQIGLEKATGTIKRELGNNLK-LYKIPDLTFVKDESIEYGNKIDEMLRN 112
>gi|322377704|ref|ZP_08052194.1| ribosome-binding factor A [Streptococcus sp. M334]
gi|321281469|gb|EFX58479.1| ribosome-binding factor A [Streptococcus sp. M334]
Length = 116
Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats.
Identities = 27/111 (24%), Positives = 55/111 (49%), Gaps = 6/111 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD--VSP 68
R RVG E++ + ++ + +D + ++I++V M DL VA VY ++ +
Sbjct: 6 RTDRVGMEIKREVNEIL-QKKVRDPRVQG--VTITDVQMLGDLSVAKVYYTILSNLASDN 62
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ L I+ +GR+L+ L +P+L F D S++ K++ ++
Sbjct: 63 QKAQVGLEKATGTIKRELGRNLK-LYKIPDLTFVKDESIEYGNKIDEMLRN 112
>gi|269127535|ref|YP_003300905.1| ribosome-binding factor A [Thermomonospora curvata DSM 43183]
gi|268312493|gb|ACY98867.1| ribosome-binding factor A [Thermomonospora curvata DSM 43183]
Length = 156
Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats.
Identities = 24/123 (19%), Positives = 58/123 (47%), Gaps = 10/123 (8%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDVSPD 69
RA ++ + ++ + ++ +D + +++++ ++ DLR ATVY ++ +
Sbjct: 6 RARKLADRIQQIVAEMLERR-IKDPRLG--FVTVTDAKVTGDLRDATVYYTVYGSEGERA 62
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM-----CLPKIPV 124
+AL IR +GR + +R+ P L F +D + + +++ L+ ++
Sbjct: 63 DTAAALESAKGLIRSEVGRRI-GIRHTPTLTFEFDAVIDNARQIDELLARARAHDEQVAK 121
Query: 125 ALE 127
A E
Sbjct: 122 AAE 124
>gi|304440002|ref|ZP_07399895.1| ribosome-binding factor A [Peptoniphilus duerdenii ATCC BAA-1640]
gi|304371494|gb|EFM25107.1| ribosome-binding factor A [Peptoniphilus duerdenii ATCC BAA-1640]
Length = 120
Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats.
Identities = 30/109 (27%), Positives = 56/109 (51%), Gaps = 4/109 (3%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-DVSP 68
+R R+GEE+R + +I ++ +D I +IS++ V ++ DL A +++ +
Sbjct: 4 KRVQRIGEELRRVISDII-RSKIKDPRIPE-IISVTNVLVTNDLSFAKIFVEIMGTKEEQ 61
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ + LN FI+ I ++ LR +PEL F D +L K+ L+
Sbjct: 62 EAALEGLNSAKGFIKKEISSEVK-LRQMPELIFILDETLDINLKMEKLI 109
>gi|260905189|ref|ZP_05913511.1| ribosome-binding factor A [Brevibacterium linens BL2]
Length = 142
Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats.
Identities = 23/108 (21%), Positives = 53/108 (49%), Gaps = 5/108 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP-D 69
RA ++ ++++ + I +D + +++++V ++ DL+ A+++ ++ D +
Sbjct: 6 RARKIADQIKVIVASTIERR-LKDPRLG--FVTVTDVRVTGDLQHASIFYTVFGDGQDLE 62
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
AL FIR +G+ L +R P L F D ++ L+ L+
Sbjct: 63 ATGKALESAKGFIRSEVGKGL-TIRLTPSLEFIADAVPEAAAHLDGLL 109
>gi|218282335|ref|ZP_03488625.1| hypothetical protein EUBIFOR_01207 [Eubacterium biforme DSM 3989]
gi|218216708|gb|EEC90246.1| hypothetical protein EUBIFOR_01207 [Eubacterium biforme DSM 3989]
Length = 112
Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats.
Identities = 25/114 (21%), Positives = 56/114 (49%), Gaps = 5/114 (4%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
S + R+ ++ + ++ E ++ + +I++V + DL A VY++
Sbjct: 2 SLKTERMEMTIQREISRIL-QFELKNPNLG--FCTITDVRCTNDLSQAKVYVTFLGKQGR 58
Query: 69 DRV-ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+ + LN + FIR ++ + ++ +R +PEL F DTSL+ K+ ++ +
Sbjct: 59 NDAGMRVLNQSKGFIRSQVAKKIK-IRKMPELIFVQDTSLEQGNKIENILKEIE 111
>gi|297180706|gb|ADI16915.1| ribosome-binding factor a [uncultured gamma proteobacterium
HF0010_16J05]
Length = 124
Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats.
Identities = 29/113 (25%), Positives = 54/113 (47%), Gaps = 6/113 (5%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL---DV 66
R LRV + +R + ++ ++ +D + +S+S+V +S DL A +Y+S
Sbjct: 2 SRDLRVADFIRDEIARIL-QSQMRDPRVGA-FVSVSDVRVSKDLSYAEIYVSSLDAKTAE 59
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+++ LN F R + + +R P+ RF YD L+S +L L+
Sbjct: 60 QKQQLLEVLNSAAGFFRSELAKR-HKMRTTPKPRFHYDELLESGPRLEKLISD 111
>gi|313676696|ref|YP_004054692.1| ribosome-binding factor a [Marivirga tractuosa DSM 4126]
gi|312943394|gb|ADR22584.1| ribosome-binding factor A [Marivirga tractuosa DSM 4126]
Length = 130
Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats.
Identities = 26/116 (22%), Positives = 52/116 (44%), Gaps = 3/116 (2%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPD 69
R + ++ L + + I+I++V +S DL A +Y+SL L +P
Sbjct: 5 SRQKKYSSLLQKDLSEIFQKQMAN--AFGKAFITITDVEVSPDLSFAKIYLSLMLSDNPS 62
Query: 70 RVISALNCNIKFIRGRIGRSL-RNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPV 124
+ + IR +G + + +R VPE+ F D +L+ +++ ++ IP
Sbjct: 63 ETLEMIRERKSEIRKHLGNRIGKQVRIVPEIAFFMDDTLERANRIDDILSKLDIPP 118
>gi|30690114|ref|NP_195199.2| ribosome-binding factor A family protein [Arabidopsis thaliana]
gi|78099793|sp|O65693|RBFA_ARATH RecName: Full=Probable ribosome-binding factor A, chloroplastic;
Flags: Precursor
gi|25082957|gb|AAN72022.1| putative protein [Arabidopsis thaliana]
gi|30023650|gb|AAP13358.1| At4g34730 [Arabidopsis thaliana]
gi|332661016|gb|AEE86416.1| ribosome-binding factor A [Arabidopsis thaliana]
Length = 215
Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 62/121 (51%), Gaps = 15/121 (12%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQ------------DRLISRDVISISEVCMSVDLRVAT 57
RR V +++ L ++L + DR +S + +IS+V +S DL+V
Sbjct: 58 RRVKMVAKQIMRELSDMLLTDTVLQHAVLPEAALGADRYLSS-LTTISDVEVSNDLQVVK 116
Query: 58 VYISLPLDVSPDRV-ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNAL 116
VY+S+ D V I+ L K++R +G+ ++ LR PE+RF D +++ ++ A+
Sbjct: 117 VYVSVFGDDRGKDVAIAGLKSKAKYVRSELGKRMK-LRLTPEVRFIEDEAMERGSRVIAI 175
Query: 117 M 117
+
Sbjct: 176 L 176
>gi|303271249|ref|XP_003054986.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226462960|gb|EEH60238.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 160
Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats.
Identities = 31/128 (24%), Positives = 61/128 (47%), Gaps = 13/128 (10%)
Query: 10 RRALRVGEEVRSALMWVI-----LNNEFQDRL------ISRDVISISEVCMSVDLRVATV 58
RR +V +++R + ++ L N + + ++++V +S DL+V V
Sbjct: 8 RRVAKVQQQMRREISNMLQTDKNLRNMISPEERMGVDNVISVMATVADVEVSNDLQVVKV 67
Query: 59 YISLPLDV-SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
++S+ D I+ L ++R IG+ + +LR PE+RF YD S + K++AL+
Sbjct: 68 FVSILGDERGKKNAINGLKKMEGYVRRNIGKKV-SLRLTPEIRFVYDDSFERGQKVSALL 126
Query: 118 CLPKIPVA 125
+
Sbjct: 127 DELREERD 134
>gi|94310968|ref|YP_584178.1| ribosome-binding factor A [Cupriavidus metallidurans CH34]
gi|166219397|sp|Q1LLR7|RBFA_RALME RecName: Full=Ribosome-binding factor A
gi|93354820|gb|ABF08909.1| 30s ribosome binding factor [Cupriavidus metallidurans CH34]
Length = 123
Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats.
Identities = 28/127 (22%), Positives = 60/127 (47%), Gaps = 6/127 (4%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
M K S R LR+ ++++ L +I E +D + ++++ V ++ D A VY
Sbjct: 1 MAKKGNITS-RNLRLSDQIQKELAEMIQR-EIRDPRLG--LVTLQSVSLTPDYAHAKVYF 56
Query: 61 SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
++ L P+ + L ++ + + L ++ VP L F +DTS++ +++ L+
Sbjct: 57 TV-LGAEPETAAAILKEKAGYLHSLLFKRL-HIHTVPTLHFHHDTSVEHAIEMSKLINEA 114
Query: 121 KIPVALE 127
A +
Sbjct: 115 NATRAKD 121
>gi|256847052|ref|ZP_05552498.1| ribosome-binding factor A [Lactobacillus coleohominis 101-4-CHN]
gi|256715716|gb|EEU30691.1| ribosome-binding factor A [Lactobacillus coleohominis 101-4-CHN]
Length = 120
Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats.
Identities = 26/115 (22%), Positives = 55/115 (47%), Gaps = 6/115 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
P R R+ +E++ + ++L +D + I+++ V ++ DL+ AT+Y SL D
Sbjct: 2 PNKRYRPERLAQEIQREVDDILLKR-VRDPRVQD--ITVTGVDVTGDLQQATIYYSLLSD 58
Query: 66 V--SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
++ + L+ IR +G L + P ++F D S+ +++ L+
Sbjct: 59 KASDGEKAQAGLDKATGLIRKELGARLNIFK-TPAIKFERDPSIAYGNRIDELLR 112
>gi|319947581|ref|ZP_08021811.1| ribosome-binding factor A [Streptococcus australis ATCC 700641]
gi|319746269|gb|EFV98532.1| ribosome-binding factor A [Streptococcus australis ATCC 700641]
Length = 116
Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats.
Identities = 28/111 (25%), Positives = 56/111 (50%), Gaps = 6/111 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD--VSP 68
R RVG E++ + ++ + +D + ++I++V M DL +A VY S+ D
Sbjct: 6 RTDRVGMEIKREVNEIL-QKKVRDPRVQG--VTITDVQMLGDLSMAKVYYSIMSDLASDN 62
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ + L I+ +GR+L+ L +P+L F D S++ K++ ++
Sbjct: 63 QKAQTGLEKATGTIKRELGRNLK-LYKIPDLTFVKDESIEYGNKIDQMLRD 112
>gi|300871728|ref|YP_003786601.1| ribosome-binding factor A [Brachyspira pilosicoli 95/1000]
gi|300689429|gb|ADK32100.1| ribosome binding factor A [Brachyspira pilosicoli 95/1000]
Length = 122
Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats.
Identities = 33/122 (27%), Positives = 59/122 (48%), Gaps = 2/122 (1%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
+S R LRV E ++ L ++L E +D I ++++I+ + + DL+ A VY
Sbjct: 1 MSSHRILRVNENIKQILSTILLR-EIEDPRIKNNLVTITRIDTAKDLKEAKVYFVCLDPS 59
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVAL 126
+ V++ LN I + + L +RYVP L F YD +L K+ + + I
Sbjct: 60 KQNEVLNGLNSAKGVIFSYLRKQL-TIRYVPNLTFYYDKTLMETNKVLSEIRSLDIKEDS 118
Query: 127 EK 128
++
Sbjct: 119 QE 120
>gi|207723242|ref|YP_002253641.1| ribosome-binding factor a protein [Ralstonia solanacearum MolK2]
gi|206588438|emb|CAQ35401.1| ribosome-binding factor a protein [Ralstonia solanacearum MolK2]
Length = 123
Score = 104 bits (260), Expect = 6e-21, Method: Composition-based stats.
Identities = 27/127 (21%), Positives = 61/127 (48%), Gaps = 5/127 (3%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
M K+ S R +R+ ++++ L +I E ++ + ++++ V ++ D A +Y
Sbjct: 1 MPKKSGSASGRNVRIADQIQRDLAELIQR-EIKNPAMG--LVTLQSVSLTPDYAHAKIYF 57
Query: 61 SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
++ L PD + LN ++ + + L ++ VP L F YD S++ +++ L+
Sbjct: 58 TV-LGAEPDAAAAILNEKAGYLHSLLFKRL-HIHTVPTLHFHYDGSVERGIEMSRLIDEA 115
Query: 121 KIPVALE 127
A +
Sbjct: 116 NATRAKD 122
>gi|148983935|ref|ZP_01817254.1| ribosome-binding factor A [Streptococcus pneumoniae SP3-BS71]
gi|148990075|ref|ZP_01821329.1| ribosome-binding factor A [Streptococcus pneumoniae SP6-BS73]
gi|148992333|ref|ZP_01822056.1| ribosome-binding factor A [Streptococcus pneumoniae SP9-BS68]
gi|148998230|ref|ZP_01825699.1| ribosome-binding factor A [Streptococcus pneumoniae SP11-BS70]
gi|149002228|ref|ZP_01827170.1| ribosome-binding factor A [Streptococcus pneumoniae SP14-BS69]
gi|149005667|ref|ZP_01829406.1| ribosome-binding factor A [Streptococcus pneumoniae SP18-BS74]
gi|149012569|ref|ZP_01833566.1| ribosome-binding factor A [Streptococcus pneumoniae SP19-BS75]
gi|149021512|ref|ZP_01835567.1| ribosome-binding factor A [Streptococcus pneumoniae SP23-BS72]
gi|168482797|ref|ZP_02707749.1| ribosome-binding factor A [Streptococcus pneumoniae CDC1873-00]
gi|168485668|ref|ZP_02710176.1| ribosome-binding factor A [Streptococcus pneumoniae CDC1087-00]
gi|168488248|ref|ZP_02712447.1| ribosome-binding factor A [Streptococcus pneumoniae SP195]
gi|168490553|ref|ZP_02714696.1| ribosome-binding factor A [Streptococcus pneumoniae CDC0288-04]
gi|168492714|ref|ZP_02716857.1| ribosome-binding factor A [Streptococcus pneumoniae CDC3059-06]
gi|168576541|ref|ZP_02722415.1| ribosome-binding factor A [Streptococcus pneumoniae MLV-016]
gi|194397934|ref|YP_002037218.1| ribosome-binding factor A [Streptococcus pneumoniae G54]
gi|221231390|ref|YP_002510542.1| ribosome-binding factor A [Streptococcus pneumoniae ATCC 700669]
gi|225856267|ref|YP_002737778.1| ribosome-binding factor A [Streptococcus pneumoniae P1031]
gi|225858395|ref|YP_002739905.1| ribosome-binding factor A [Streptococcus pneumoniae 70585]
gi|225860562|ref|YP_002742071.1| ribosome-binding factor A [Streptococcus pneumoniae Taiwan19F-14]
gi|237650171|ref|ZP_04524423.1| ribosome-binding factor A [Streptococcus pneumoniae CCRI 1974]
gi|237821771|ref|ZP_04597616.1| ribosome-binding factor A [Streptococcus pneumoniae CCRI 1974M2]
gi|293364172|ref|ZP_06610899.1| ribosome-binding factor A [Streptococcus oralis ATCC 35037]
gi|298231046|ref|ZP_06964727.1| ribosome-binding factor A [Streptococcus pneumoniae str. Canada
MDR_19F]
gi|298255631|ref|ZP_06979217.1| ribosome-binding factor A [Streptococcus pneumoniae str. Canada
MDR_19A]
gi|298502351|ref|YP_003724291.1| ribosome-binding factor A [Streptococcus pneumoniae TCH8431/19A]
gi|306824622|ref|ZP_07457967.1| ribosome-binding factor A [Streptococcus sp. oral taxon 071 str.
73H25AP]
gi|307067178|ref|YP_003876144.1| ribosome-binding factor A [Streptococcus pneumoniae AP200]
gi|307126760|ref|YP_003878791.1| ribosome-binding factor A [Streptococcus pneumoniae 670-6B]
gi|307702473|ref|ZP_07639428.1| ribosome-binding factor A [Streptococcus oralis ATCC 35037]
gi|307705621|ref|ZP_07642473.1| ribosome-binding factor A [Streptococcus mitis SK597]
gi|307707656|ref|ZP_07644137.1| ribosome-binding factor A [Streptococcus mitis NCTC 12261]
gi|307709811|ref|ZP_07646262.1| ribosome-binding factor A [Streptococcus mitis SK564]
gi|307710810|ref|ZP_07647238.1| ribosome-binding factor A [Streptococcus mitis SK321]
gi|315611727|ref|ZP_07886649.1| ribosome-binding factor A [Streptococcus sanguinis ATCC 49296]
gi|322376132|ref|ZP_08050641.1| ribosome-binding factor A [Streptococcus sp. C300]
gi|226723611|sp|B5E267|RBFA_STRP4 RecName: Full=Ribosome-binding factor A
gi|254789765|sp|C1C5S9|RBFA_STRP7 RecName: Full=Ribosome-binding factor A
gi|254789766|sp|B8ZM94|RBFA_STRPJ RecName: Full=Ribosome-binding factor A
gi|254789769|sp|C1CJ40|RBFA_STRZP RecName: Full=Ribosome-binding factor A
gi|254789770|sp|C1CQ49|RBFA_STRZT RecName: Full=Ribosome-binding factor A
gi|147755873|gb|EDK62917.1| ribosome-binding factor A [Streptococcus pneumoniae SP11-BS70]
gi|147759543|gb|EDK66534.1| ribosome-binding factor A [Streptococcus pneumoniae SP14-BS69]
gi|147762607|gb|EDK69567.1| ribosome-binding factor A [Streptococcus pneumoniae SP18-BS74]
gi|147763374|gb|EDK70311.1| ribosome-binding factor A [Streptococcus pneumoniae SP19-BS75]
gi|147924082|gb|EDK75194.1| ribosome-binding factor A [Streptococcus pneumoniae SP3-BS71]
gi|147924601|gb|EDK75688.1| ribosome-binding factor A [Streptococcus pneumoniae SP6-BS73]
gi|147928959|gb|EDK79971.1| ribosome-binding factor A [Streptococcus pneumoniae SP9-BS68]
gi|147930208|gb|EDK81193.1| ribosome-binding factor A [Streptococcus pneumoniae SP23-BS72]
gi|172043604|gb|EDT51650.1| ribosome-binding factor A [Streptococcus pneumoniae CDC1873-00]
gi|183571117|gb|EDT91645.1| ribosome-binding factor A [Streptococcus pneumoniae CDC1087-00]
gi|183573142|gb|EDT93670.1| ribosome-binding factor A [Streptococcus pneumoniae SP195]
gi|183574953|gb|EDT95481.1| ribosome-binding factor A [Streptococcus pneumoniae CDC0288-04]
gi|183577069|gb|EDT97597.1| ribosome-binding factor A [Streptococcus pneumoniae CDC3059-06]
gi|183577721|gb|EDT98249.1| ribosome-binding factor A [Streptococcus pneumoniae MLV-016]
gi|194357601|gb|ACF56049.1| ribosome-binding factor A [Streptococcus pneumoniae G54]
gi|220673850|emb|CAR68353.1| ribosome-binding factor A [Streptococcus pneumoniae ATCC 700669]
gi|225720090|gb|ACO15944.1| ribosome-binding factor A [Streptococcus pneumoniae 70585]
gi|225725626|gb|ACO21478.1| ribosome-binding factor A [Streptococcus pneumoniae P1031]
gi|225727863|gb|ACO23714.1| ribosome-binding factor A [Streptococcus pneumoniae Taiwan19F-14]
gi|291317350|gb|EFE57776.1| ribosome-binding factor A [Streptococcus oralis ATCC 35037]
gi|298237946|gb|ADI69077.1| ribosome-binding factor A [Streptococcus pneumoniae TCH8431/19A]
gi|301793761|emb|CBW36148.1| ribosome-binding factor A [Streptococcus pneumoniae INV104]
gi|301799614|emb|CBW32169.1| ribosome-binding factor A [Streptococcus pneumoniae OXC141]
gi|304433190|gb|EFM36161.1| ribosome-binding factor A [Streptococcus sp. oral taxon 071 str.
73H25AP]
gi|306408715|gb|ADM84142.1| Ribosome-binding factor A [Streptococcus pneumoniae AP200]
gi|306483822|gb|ADM90691.1| ribosome-binding factor A [Streptococcus pneumoniae 670-6B]
gi|307616369|gb|EFN95561.1| ribosome-binding factor A [Streptococcus mitis NCTC 12261]
gi|307617416|gb|EFN96588.1| ribosome-binding factor A [Streptococcus mitis SK321]
gi|307619513|gb|EFN98638.1| ribosome-binding factor A [Streptococcus mitis SK564]
gi|307620898|gb|EFN99982.1| ribosome-binding factor A [Streptococcus mitis SK597]
gi|307623967|gb|EFO02949.1| ribosome-binding factor A [Streptococcus oralis ATCC 35037]
gi|315316142|gb|EFU64172.1| ribosome-binding factor A [Streptococcus sanguinis ATCC 49296]
gi|321278900|gb|EFX55944.1| ribosome-binding factor A [Streptococcus sp. C300]
gi|327390297|gb|EGE88638.1| ribosome-binding factor A [Streptococcus pneumoniae GA04375]
gi|332074371|gb|EGI84847.1| ribosome-binding factor A [Streptococcus pneumoniae GA17570]
gi|332076393|gb|EGI86856.1| ribosome-binding factor A [Streptococcus pneumoniae GA41301]
gi|332076989|gb|EGI87451.1| ribosome-binding factor A [Streptococcus pneumoniae GA17545]
gi|332202441|gb|EGJ16510.1| ribosome-binding factor A [Streptococcus pneumoniae GA41317]
gi|332203724|gb|EGJ17791.1| ribosome-binding factor A [Streptococcus pneumoniae GA47368]
gi|332204577|gb|EGJ18642.1| ribosome-binding factor A [Streptococcus pneumoniae GA47901]
Length = 116
Score = 104 bits (260), Expect = 6e-21, Method: Composition-based stats.
Identities = 27/111 (24%), Positives = 55/111 (49%), Gaps = 6/111 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD--VSP 68
R RVG E++ + ++ + +D + ++I++V M DL VA VY ++ +
Sbjct: 6 RTDRVGMEIKREVNEIL-QKKVRDPRVQG--VTITDVQMLGDLSVAKVYYTILSNLASDN 62
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ L I+ +GR+L+ L +P+L F D S++ K++ ++
Sbjct: 63 QKAQIGLEKATGTIKRELGRNLK-LYKIPDLTFVKDESIEYGNKIDEMLRN 112
>gi|322385997|ref|ZP_08059637.1| ribosome-binding factor A [Streptococcus cristatus ATCC 51100]
gi|321269980|gb|EFX52900.1| ribosome-binding factor A [Streptococcus cristatus ATCC 51100]
Length = 116
Score = 103 bits (259), Expect = 6e-21, Method: Composition-based stats.
Identities = 27/113 (23%), Positives = 56/113 (49%), Gaps = 6/113 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD--VSP 68
R RVG E++ + ++ + +D + ++I++V M DL +A VY S+ D
Sbjct: 6 RTDRVGMEIKREVNEIL-QKKVRDPRVQG--VTITDVQMLGDLSMAKVYYSIMSDLASDN 62
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+ L I+ +GR+L+ + +P+L F D S++ K++ ++ +
Sbjct: 63 QKAQLGLEKATGTIKRELGRNLK-MYKIPDLTFVKDESIEYGNKIDQMLRNLE 114
>gi|81428858|ref|YP_395858.1| ribosome-binding factor A [Lactobacillus sakei subsp. sakei 23K]
gi|123564060|sp|Q38W82|RBFA_LACSS RecName: Full=Ribosome-binding factor A
gi|78610500|emb|CAI55551.1| Ribosome-binding factor A [Lactobacillus sakei subsp. sakei 23K]
Length = 118
Score = 103 bits (259), Expect = 6e-21, Method: Composition-based stats.
Identities = 24/111 (21%), Positives = 55/111 (49%), Gaps = 6/111 (5%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD--VS 67
R RV +E++ + ++L +D + ++I+++ +S DL+ VY S+ +
Sbjct: 3 HRVGRVEQEIQREVNDILLKR-VRDPRVEG--VTITDINLSGDLQHVKVYYSILSNLASD 59
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
++ L+ IR +G+ ++ L +PE+ F D S++ ++ L+
Sbjct: 60 AEKAQKGLDKAKGLIRSELGQRIK-LYKIPEITFEQDGSVRYGEHIDELLR 109
>gi|254302275|ref|ZP_04969633.1| ribosome binding factor A [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
gi|148322467|gb|EDK87717.1| ribosome binding factor A [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
Length = 123
Score = 103 bits (259), Expect = 6e-21, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 63/120 (52%), Gaps = 10/120 (8%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL----- 64
+R +G+E+ + V+L E ++ I ++S++EV ++ DL+ A Y S+
Sbjct: 7 QRLEGIGKEIMRVISKVLL-EEVKNPKIKG-LVSVTEVDVTEDLKFADTYFSILPPLNSD 64
Query: 65 --DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
+ ++ ALN F+R R+ + ++RY PE+R + D S+++ K+ L+ K+
Sbjct: 65 EKQYDHEEILEALNEIKGFLRKRVAEEV-DIRYTPEIRVKLDNSMENAMKITKLLNDLKV 123
>gi|289167253|ref|YP_003445520.1| ribosome-binding factor A [Streptococcus mitis B6]
gi|288906818|emb|CBJ21652.1| ribosome-binding factor A [Streptococcus mitis B6]
Length = 116
Score = 103 bits (259), Expect = 6e-21, Method: Composition-based stats.
Identities = 27/111 (24%), Positives = 55/111 (49%), Gaps = 6/111 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD--VSP 68
R RVG E++ + ++ + +D + ++I++V M DL VA VY ++ +
Sbjct: 6 RTDRVGMEIKREVNEIL-QKKVRDPRVQG--VTITDVQMIGDLSVAKVYYTILSNLASDN 62
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ L I+ +GR+L+ L +P+L F D S++ K++ ++
Sbjct: 63 QKAQIGLEKATGTIKRELGRNLK-LYKIPDLTFVKDESIEYGNKIDEMLRN 112
>gi|295105172|emb|CBL02716.1| ribosome-binding factor A [Faecalibacterium prausnitzii SL3/3]
Length = 130
Score = 103 bits (259), Expect = 6e-21, Method: Composition-based stats.
Identities = 23/115 (20%), Positives = 52/115 (45%), Gaps = 4/115 (3%)
Query: 14 RVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS-PDRVI 72
R+ ++++ ++ +I +D + +++++ + ++ DL VA VY+S+ P I
Sbjct: 8 RLAQDMKREVIAII--GRLKDPRLEGGLLTVTRLDVTPDLDVAKVYVSVMGRADGPKPAI 65
Query: 73 SALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALE 127
ALN +R + + + ++R P F D +N L+ + E
Sbjct: 66 EALNRAAGHVRTEVSKKM-HIRKAPRFIFVEDDGAAYAAHINELLRSLNVNGEEE 119
>gi|258539783|ref|YP_003174282.1| ribosome-binding factor A [Lactobacillus rhamnosus Lc 705]
gi|257151459|emb|CAR90431.1| Ribosome-binding factor A [Lactobacillus rhamnosus Lc 705]
Length = 119
Score = 103 bits (259), Expect = 6e-21, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 58/117 (49%), Gaps = 8/117 (6%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD--VS 67
R RV +++ + ++L + D + ++I+ V ++ DL+ AT++ S+ D
Sbjct: 5 HRIGRVETQIQREVDDILLK-DVNDPRVKG--VTITGVKLTGDLQHATIFYSILDDAPDK 61
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPV 124
+ + L+ IR +G+ +R + VPE+ F D S+Q +++ L+ ++
Sbjct: 62 VEAAQTGLDKASGLIRREVGQRIRLFK-VPEIEFAQDKSVQYGARIDQLIN--EVRR 115
>gi|257869196|ref|ZP_05648849.1| ribosome-binding factor A [Enterococcus gallinarum EG2]
gi|257803360|gb|EEV32182.1| ribosome-binding factor A [Enterococcus gallinarum EG2]
Length = 120
Score = 103 bits (259), Expect = 6e-21, Method: Composition-based stats.
Identities = 27/113 (23%), Positives = 57/113 (50%), Gaps = 6/113 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD--VSP 68
R RV +E+ + ++ + +D + ++I++V ++ DL+ AT++ S D
Sbjct: 5 RDRRVAQEILKEVNQIL-RKKVRDPRVQD--VTITDVRVTGDLQQATIFYSTLSDLASEK 61
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+ + L +R +G++L +L VPEL+F D S+Q K++ ++
Sbjct: 62 QKAQAGLEKATGLVRRELGQAL-SLYKVPELQFELDESVQYGNKIDEMIRDLH 113
>gi|159897009|ref|YP_001543256.1| ribosome-binding factor A [Herpetosiphon aurantiacus ATCC 23779]
gi|159890048|gb|ABX03128.1| ribosome-binding factor A [Herpetosiphon aurantiacus ATCC 23779]
Length = 126
Score = 103 bits (259), Expect = 6e-21, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 58/112 (51%), Gaps = 5/112 (4%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS- 67
++R +V EE+++ L I E QD + ++++ V +S DL A + +S+ D +
Sbjct: 4 NKRVEQVAEEIKTILSNAI-QFEIQDPRLG--FVTLTSVNVSPDLYHANINVSVMGDDTA 60
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
++ L+ F+R +G+ ++ LR VPEL F D ++ + ++ L
Sbjct: 61 RKDSLATLDRAKGFLRRELGQQMK-LRAVPELHFHLDVTIDTRQYMDTLFNQ 111
>gi|34762751|ref|ZP_00143740.1| Ribosome-binding factor A [Fusobacterium nucleatum subsp. vincentii
ATCC 49256]
gi|237742961|ref|ZP_04573442.1| ribosome-binding factor A [Fusobacterium sp. 4_1_13]
gi|256846933|ref|ZP_05552387.1| ribosome-binding factor A [Fusobacterium sp. 3_1_36A2]
gi|294784274|ref|ZP_06749569.1| ribosome-binding factor A [Fusobacterium sp. 3_1_27]
gi|27887601|gb|EAA24681.1| Ribosome-binding factor A [Fusobacterium nucleatum subsp. vincentii
ATCC 49256]
gi|229430609|gb|EEO40821.1| ribosome-binding factor A [Fusobacterium sp. 4_1_13]
gi|256717731|gb|EEU31290.1| ribosome-binding factor A [Fusobacterium sp. 3_1_36A2]
gi|294488140|gb|EFG35491.1| ribosome-binding factor A [Fusobacterium sp. 3_1_27]
Length = 120
Score = 103 bits (259), Expect = 6e-21, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 63/120 (52%), Gaps = 10/120 (8%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL----- 64
+R +G+E+ + VIL E ++ I ++S++EV ++ DL+ A Y S+
Sbjct: 4 QRLEGIGKEIMRVISKVIL-EEVKNPKIKG-LVSVTEVDVTEDLKFADTYFSILPPLNSD 61
Query: 65 --DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
+ ++ ALN F+R R+ + ++RY PE+R + D S+++ K+ L+ K+
Sbjct: 62 EKQYDSEEILEALNEIKGFLRKRVAEEV-DIRYTPEIRVKLDNSMENAMKITKLLNDLKV 120
>gi|195977586|ref|YP_002122830.1| ribosome-binding factor A [Streptococcus equi subsp. zooepidemicus
MGCS10565]
gi|225869106|ref|YP_002745054.1| ribosome-binding factor A [Streptococcus equi subsp. zooepidemicus]
gi|225869942|ref|YP_002745889.1| ribosome-binding factor A [Streptococcus equi subsp. equi 4047]
gi|238689801|sp|B4U1F0|RBFA_STREM RecName: Full=Ribosome-binding factor A
gi|254789764|sp|C0M8P8|RBFA_STRE4 RecName: Full=Ribosome-binding factor A
gi|259552110|sp|C0MDY4|RBFA_STRS7 RecName: Full=Ribosome-binding factor A
gi|195974291|gb|ACG61817.1| ribosome-binding factor A [Streptococcus equi subsp. zooepidemicus
MGCS10565]
gi|225699346|emb|CAW92749.1| ribosome-binding factor A [Streptococcus equi subsp. equi 4047]
gi|225702382|emb|CAX00224.1| ribosome-binding factor A [Streptococcus equi subsp. zooepidemicus]
Length = 116
Score = 103 bits (259), Expect = 6e-21, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 54/117 (46%), Gaps = 6/117 (5%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD- 65
+ R RVG E++ + ++ + +D + ++I+EV M DL VA VY ++ D
Sbjct: 1 MTNHRIDRVGMEIKREVNEILHK-KVRDPRVQG--VTITEVQMLGDLSVAKVYYTIMSDL 57
Query: 66 -VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+ L I+ +G+ L + +P+L F D S+ K++ L+ +
Sbjct: 58 ASDNQKAEIGLKKATGTIKRELGKQL-TMYKIPDLVFEKDNSIAYGNKIDQLLRELE 113
>gi|194289948|ref|YP_002005855.1| ribosome-binding factor a [Cupriavidus taiwanensis LMG 19424]
gi|238692734|sp|B3R1E3|RBFA_CUPTR RecName: Full=Ribosome-binding factor A
gi|193223783|emb|CAQ69790.1| Ribosome-binding factor A [Cupriavidus taiwanensis LMG 19424]
Length = 123
Score = 103 bits (259), Expect = 7e-21, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 58/120 (48%), Gaps = 5/120 (4%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
S R LR+ ++++ L +I E +D + ++++ V ++ D A VY ++ L
Sbjct: 8 SSRNLRISDQIQKDLAEMIQR-ELRDPRLG--LVTLQSVTLTPDYAHAKVYFTV-LGADA 63
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALEK 128
+ LN ++ + + L ++ VP L F +DTS++ +++ L+ + ++
Sbjct: 64 AETEAILNEKAGYLHSLLFKRL-HIHTVPTLHFHHDTSVEHAIEMSRLINEANATRSKDE 122
>gi|116495054|ref|YP_806788.1| ribosome-binding factor A [Lactobacillus casei ATCC 334]
gi|191638557|ref|YP_001987723.1| ribosome-binding factor A [Lactobacillus casei BL23]
gi|199597096|ref|ZP_03210528.1| Ribosome-binding factor A [Lactobacillus rhamnosus HN001]
gi|227534935|ref|ZP_03964984.1| ribosome-binding factor A [Lactobacillus paracasei subsp. paracasei
ATCC 25302]
gi|229552414|ref|ZP_04441139.1| ribosome-binding factor A [Lactobacillus rhamnosus LMS2-1]
gi|239631351|ref|ZP_04674382.1| ribosome-binding factor A [Lactobacillus paracasei subsp. paracasei
8700:2]
gi|258508606|ref|YP_003171357.1| ribosome-binding factor A [Lactobacillus rhamnosus GG]
gi|301066617|ref|YP_003788640.1| ribosome-binding factor A [Lactobacillus casei str. Zhang]
gi|122263529|sp|Q038M6|RBFA_LACC3 RecName: Full=Ribosome-binding factor A
gi|238693047|sp|B3WER4|RBFA_LACCB RecName: Full=Ribosome-binding factor A
gi|116105204|gb|ABJ70346.1| ribosome-binding factor A [Lactobacillus casei ATCC 334]
gi|190712859|emb|CAQ66865.1| Ribosome-binding factor A [Lactobacillus casei BL23]
gi|199591900|gb|EDY99974.1| Ribosome-binding factor A [Lactobacillus rhamnosus HN001]
gi|227187691|gb|EEI67758.1| ribosome-binding factor A [Lactobacillus paracasei subsp. paracasei
ATCC 25302]
gi|229314240|gb|EEN80213.1| ribosome-binding factor A [Lactobacillus rhamnosus LMS2-1]
gi|239525816|gb|EEQ64817.1| ribosome-binding factor A [Lactobacillus paracasei subsp. paracasei
8700:2]
gi|257148533|emb|CAR87506.1| Ribosome-binding factor A [Lactobacillus rhamnosus GG]
gi|259649913|dbj|BAI42075.1| ribosome-binding factor A [Lactobacillus rhamnosus GG]
gi|300439024|gb|ADK18790.1| Ribosome-binding factor A [Lactobacillus casei str. Zhang]
gi|327382595|gb|AEA54071.1| Ribosome-binding factor A [Lactobacillus casei LC2W]
gi|327385793|gb|AEA57267.1| Ribosome-binding factor A [Lactobacillus casei BD-II]
gi|328479998|gb|EGF49027.1| ribosome-binding factor A [Lactobacillus rhamnosus MTCC 5462]
Length = 117
Score = 103 bits (259), Expect = 7e-21, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 58/117 (49%), Gaps = 8/117 (6%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD--VS 67
R RV +++ + ++L + D + ++I+ V ++ DL+ AT++ S+ D
Sbjct: 3 HRIGRVETQIQREVDDILLK-DVNDPRVKG--VTITGVKLTGDLQHATIFYSILDDAPDK 59
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPV 124
+ + L+ IR +G+ +R + VPE+ F D S+Q +++ L+ ++
Sbjct: 60 VEAAQTGLDKASGLIRREVGQRIRLFK-VPEIEFAQDKSVQYGARIDQLIN--EVRR 113
>gi|330444478|ref|YP_004377464.1| ribosome-binding factor A [Chlamydophila pecorum E58]
gi|328807588|gb|AEB41761.1| ribosome-binding factor A [Chlamydophila pecorum E58]
Length = 119
Score = 103 bits (259), Expect = 7e-21, Method: Composition-based stats.
Identities = 33/113 (29%), Positives = 53/113 (46%), Gaps = 4/113 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
+RR +V +R A+ VIL + Q IS I+++ V +S DLR A VY+S+
Sbjct: 2 SGNRRIQKVNSLLREAIAEVILK-DVQHPKISNHWITVTRVSLSKDLRFAQVYVSIMPQE 60
Query: 67 S--PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ AL + FI R + + L+Y PEL F + + +L+
Sbjct: 61 KVTIQETLEALKVSAGFIACRTSKKV-VLKYFPELNFHLEDIFSPQDHIESLL 112
>gi|254282436|ref|ZP_04957404.1| ribosome-binding factor A [gamma proteobacterium NOR51-B]
gi|219678639|gb|EED34988.1| ribosome-binding factor A [gamma proteobacterium NOR51-B]
Length = 134
Score = 103 bits (259), Expect = 7e-21, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 54/117 (46%), Gaps = 7/117 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL- 64
+ R+ RVG+ ++ L +I E +D ++S++ V ++ D A VY +
Sbjct: 2 AREFTRSQRVGDFLQQELARLIQQ-EVRDPR--AHMVSVTGVDVTRDFAHAKVYYTQLGV 58
Query: 65 --DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ + LN F+R RI RS +R VP L+FR+D S+ + L+
Sbjct: 59 DSREAAEETTQVLNGAAGFLRSRIARS-ATMRTVPRLQFRFDESVGYGRSMEQLIDR 114
>gi|120612036|ref|YP_971714.1| ribosome-binding factor A [Acidovorax citrulli AAC00-1]
gi|171769194|sp|A1TSK2|RBFA_ACIAC RecName: Full=Ribosome-binding factor A
gi|120590500|gb|ABM33940.1| ribosome-binding factor A [Acidovorax citrulli AAC00-1]
Length = 125
Score = 103 bits (259), Expect = 7e-21, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 55/119 (46%), Gaps = 6/119 (5%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
M K R +V ++++ L +I E +D I ++++ V ++ D A V+
Sbjct: 1 MAAKKSSTPNRGFKVADQIQRDLTELI--RELKDPRIG--MVTLQAVEVTPDYAHAKVFF 56
Query: 61 SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
S+ + D ALN F+R + + L ++ VP L F +D + + +NAL+
Sbjct: 57 SVLVG-DADATQDALNQAAGFLRNGLFKRL-HIHTVPTLHFMFDRTTERASDMNALIAR 113
>gi|326798580|ref|YP_004316399.1| ribosome-binding factor A [Sphingobacterium sp. 21]
gi|326549344|gb|ADZ77729.1| Ribosome-binding factor A [Sphingobacterium sp. 21]
Length = 124
Score = 103 bits (259), Expect = 7e-21, Method: Composition-based stats.
Identities = 22/111 (19%), Positives = 50/111 (45%), Gaps = 3/111 (2%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS 67
S+R R ++ L + +++++ V ++ DL +A +Y+S +
Sbjct: 5 ESKRQQRFASVIQQDLADIFQREGIV--WAPDTLVTVTRVRVTPDLAIARIYLSFLNAKN 62
Query: 68 PDRVISALNCNIKFIRGRIGRSLRN-LRYVPELRFRYDTSLQSYWKLNALM 117
I+ + + IR ++G ++N R VP+L F D + + +++ L
Sbjct: 63 VQEAIANIKSHAGEIRYKLGSRIKNQARIVPQLEFFVDDTNEYVERMDKLF 113
>gi|327398880|ref|YP_004339749.1| Ribosome-binding factor A [Hippea maritima DSM 10411]
gi|327181509|gb|AEA33690.1| Ribosome-binding factor A [Hippea maritima DSM 10411]
Length = 133
Score = 103 bits (258), Expect = 8e-21, Method: Composition-based stats.
Identities = 27/116 (23%), Positives = 63/116 (54%), Gaps = 5/116 (4%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLD 65
+ +R RV +++ A+ ++ EF+ I++++V M+ DLR+A +++S +
Sbjct: 6 SSFKRKDRVASQIKKAVSEIL---EFESGNEKLRSITLTDVEMTKDLRIAKIFVSSSMTE 62
Query: 66 VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
++ + L FI+ + +R L+Y+P+L F YD S+ +K+++++ +
Sbjct: 63 MTQKDTLDVLESAKGFIKKNLATKVR-LKYMPKLIFEYDASINYGFKIDSILREIE 117
>gi|222110451|ref|YP_002552715.1| ribosome-binding factor a [Acidovorax ebreus TPSY]
gi|254789747|sp|B9MGP2|RBFA_DIAST RecName: Full=Ribosome-binding factor A
gi|221729895|gb|ACM32715.1| ribosome-binding factor A [Acidovorax ebreus TPSY]
Length = 125
Score = 103 bits (258), Expect = 8e-21, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 56/119 (47%), Gaps = 6/119 (5%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
M K + R +V ++++ L +I + +D I ++++ V ++ D A V+
Sbjct: 1 MAAKKSSSPNRGFKVADQIQRDLTELI--RDLKDPRIG--MVTLQGVEVTPDYAHAKVFF 56
Query: 61 SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
S+ + + ALN F+R + + L ++ VP L F YD + + +NAL+
Sbjct: 57 SVLIG-DGEASEEALNQAGGFLRNGLFKRL-HIHTVPTLHFVYDRTTEKAADMNALIAR 113
>gi|91782990|ref|YP_558196.1| ribosome-binding factor A [Burkholderia xenovorans LB400]
gi|123168609|sp|Q140U5|RBFA_BURXL RecName: Full=Ribosome-binding factor A
gi|91686944|gb|ABE30144.1| ribosome-binding factor A [Burkholderia xenovorans LB400]
Length = 121
Score = 103 bits (258), Expect = 8e-21, Method: Composition-based stats.
Identities = 26/127 (20%), Positives = 58/127 (45%), Gaps = 7/127 (5%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
M K + R +++ ++++ L ++ E +D I +++I V ++ D A VY
Sbjct: 1 MPKKRSSPN-RNVQIADQIQRDLSELL--REVKDPRIG--LVTIQSVELTPDYAHAKVYF 55
Query: 61 SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
+ P + + AL + ++ + L ++ VP L F YD +++ +++ L+
Sbjct: 56 TTLTG-DPQQTLEALTHAAGHLHNQLFKRL-HIHTVPTLHFHYDKTIERAVEMSRLIDEA 113
Query: 121 KIPVALE 127
A E
Sbjct: 114 NANRAKE 120
>gi|170696664|ref|ZP_02887782.1| ribosome-binding factor A [Burkholderia graminis C4D1M]
gi|170138446|gb|EDT06656.1| ribosome-binding factor A [Burkholderia graminis C4D1M]
Length = 121
Score = 103 bits (258), Expect = 9e-21, Method: Composition-based stats.
Identities = 26/127 (20%), Positives = 59/127 (46%), Gaps = 7/127 (5%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
M K + R +++ ++++ L ++ E +D I +++I V ++ D A VY
Sbjct: 1 MPKKRSSPN-RNVQIADQIQRDLSELL--REVKDPRIG--IVTIQSVELTPDYAHAKVYF 55
Query: 61 SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
+ P + ++AL + ++ + L ++ VP L F YD +++ +++ L+
Sbjct: 56 TTLTG-DPQQTLAALTHAAGHLHNQLFKRL-HIHTVPTLHFHYDKTIERAVEMSRLIDEA 113
Query: 121 KIPVALE 127
A E
Sbjct: 114 NASRAKE 120
>gi|121600095|ref|YP_992836.1| ribosome-binding factor A [Burkholderia mallei SAVP1]
gi|124383895|ref|YP_001026179.1| ribosome-binding factor A [Burkholderia mallei NCTC 10229]
gi|126440943|ref|YP_001058780.1| ribosome-binding factor A [Burkholderia pseudomallei 668]
gi|126448377|ref|YP_001080551.1| ribosome-binding factor A [Burkholderia mallei NCTC 10247]
gi|126454142|ref|YP_001066032.1| ribosome-binding factor A [Burkholderia pseudomallei 1106a]
gi|134282412|ref|ZP_01769117.1| ribosome-binding factor A [Burkholderia pseudomallei 305]
gi|167001015|ref|ZP_02266816.1| ribosome-binding factor A [Burkholderia mallei PRL-20]
gi|167824414|ref|ZP_02455885.1| ribosome-binding factor A [Burkholderia pseudomallei 9]
gi|167911164|ref|ZP_02498255.1| ribosome-binding factor A [Burkholderia pseudomallei 112]
gi|226199713|ref|ZP_03795266.1| ribosome-binding factor A [Burkholderia pseudomallei Pakistan 9]
gi|237812043|ref|YP_002896494.1| ribosome-binding factor A [Burkholderia pseudomallei MSHR346]
gi|238563927|ref|ZP_00438018.2| ribosome-binding factor A [Burkholderia mallei GB8 horse 4]
gi|242316055|ref|ZP_04815071.1| ribosome-binding factor A [Burkholderia pseudomallei 1106b]
gi|254261738|ref|ZP_04952792.1| ribosome-binding factor A [Burkholderia pseudomallei 1710a]
gi|76580488|gb|ABA49963.1| ribosome-binding factor A [Burkholderia pseudomallei 1710b]
gi|121228905|gb|ABM51423.1| ribosome-binding factor A [Burkholderia mallei SAVP1]
gi|124291915|gb|ABN01184.1| ribosome-binding factor A [Burkholderia mallei NCTC 10229]
gi|126220436|gb|ABN83942.1| ribosome-binding factor A [Burkholderia pseudomallei 668]
gi|126227784|gb|ABN91324.1| ribosome-binding factor A [Burkholderia pseudomallei 1106a]
gi|126241247|gb|ABO04340.1| ribosome-binding factor A [Burkholderia mallei NCTC 10247]
gi|134246450|gb|EBA46539.1| ribosome-binding factor A [Burkholderia pseudomallei 305]
gi|225928299|gb|EEH24333.1| ribosome-binding factor A [Burkholderia pseudomallei Pakistan 9]
gi|237506713|gb|ACQ99031.1| ribosome-binding factor A [Burkholderia pseudomallei MSHR346]
gi|238519663|gb|EEP83132.1| ribosome-binding factor A [Burkholderia mallei GB8 horse 4]
gi|242139294|gb|EES25696.1| ribosome-binding factor A [Burkholderia pseudomallei 1106b]
gi|243063193|gb|EES45379.1| ribosome-binding factor A [Burkholderia mallei PRL-20]
gi|254220427|gb|EET09811.1| ribosome-binding factor A [Burkholderia pseudomallei 1710a]
Length = 138
Score = 103 bits (258), Expect = 9e-21, Method: Composition-based stats.
Identities = 27/127 (21%), Positives = 57/127 (44%), Gaps = 6/127 (4%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
M K + R +++ ++++ L +I+ E +D I +++I V ++ D A VY
Sbjct: 17 MSKKRSSPN-RNVQIADQIQRDLSELIMR-EVKDPRIG--IVTIQSVELTPDYAHAKVYF 72
Query: 61 SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
+ +P ALN + + + L ++ VP L F YD +++ ++ L+
Sbjct: 73 TALTG-TPADTQEALNHAAGHLHNLLFKRL-HIHTVPTLHFHYDQTIEKAVAMSRLIDEA 130
Query: 121 KIPVALE 127
A +
Sbjct: 131 NATRAKD 137
>gi|242091890|ref|XP_002436435.1| hypothetical protein SORBIDRAFT_10g002540 [Sorghum bicolor]
gi|241914658|gb|EER87802.1| hypothetical protein SORBIDRAFT_10g002540 [Sorghum bicolor]
Length = 207
Score = 103 bits (258), Expect = 9e-21, Method: Composition-based stats.
Identities = 32/131 (24%), Positives = 63/131 (48%), Gaps = 13/131 (9%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDR-----------LISRDVISISEVCMSVDLRVATV 58
RR V ++++ L ++ + R + +I++V +S DL+V V
Sbjct: 43 RRVRMVAKQIQRELADMLTRDPVLQRAVLPEAALGADRYLSSLTTIADVELSNDLQVCKV 102
Query: 59 YISLPLDVSPDRV-ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
Y+S+ D +V I L K++R +IG+ ++ LR PE+RF D S++ ++ A++
Sbjct: 103 YVSVFGDERGKKVAIEGLKAKTKYVRSQIGKRMK-LRLTPEIRFIEDESMERGSRILAIL 161
Query: 118 CLPKIPVALEK 128
K ++
Sbjct: 162 DKLKEEREQQE 172
>gi|259046779|ref|ZP_05737180.1| ribosome-binding factor A [Granulicatella adiacens ATCC 49175]
gi|259036547|gb|EEW37802.1| ribosome-binding factor A [Granulicatella adiacens ATCC 49175]
Length = 119
Score = 103 bits (258), Expect = 9e-21, Method: Composition-based stats.
Identities = 28/111 (25%), Positives = 53/111 (47%), Gaps = 6/111 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP--LDVSP 68
R RV +E+ + ++ + +D + I+I+EV ++ DL++AT+Y + L
Sbjct: 5 RVGRVSQEILREVNDILSK-KVRDPRVQE--ITITEVEVTGDLQIATIYYTTLHKLASER 61
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
L + IR +G+ L +L PEL F+ D S+ ++ L+
Sbjct: 62 QATERGLEKSKGLIRRELGKRL-SLYKTPELIFKRDESVDYGNHIDELLKS 111
>gi|119504360|ref|ZP_01626440.1| ribosome-binding factor A [marine gamma proteobacterium HTCC2080]
gi|119459868|gb|EAW40963.1| ribosome-binding factor A [marine gamma proteobacterium HTCC2080]
Length = 134
Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 51/116 (43%), Gaps = 7/116 (6%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K+ R R+G+ ++ L +L D + ++S++ V +S DL A V+ +
Sbjct: 4 AKDYSRTQRIGDSLQQELAR-LLQFTLSDPRLK--MVSVTGVDVSRDLSHAKVFFTQMGV 60
Query: 66 VSPD---RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
SAL+ F+R I LR VP+LRF +D S+ + L+
Sbjct: 61 DDAQAAAETTSALDRASGFLRSEIA-RTATLRTVPKLRFCFDESVGRGRDMETLIR 115
>gi|229824130|ref|ZP_04450199.1| hypothetical protein GCWU000282_01434 [Catonella morbi ATCC 51271]
gi|229786484|gb|EEP22598.1| hypothetical protein GCWU000282_01434 [Catonella morbi ATCC 51271]
Length = 119
Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 56/119 (47%), Gaps = 6/119 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV--SP 68
R RV +E+ + ++L E +D I ++I++V ++ DL+ AT++ S D
Sbjct: 5 RVGRVRQEIMREVNRILLR-EAKDPRIEG--VTITDVDLTGDLQQATIFYSTLSDKAGQR 61
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALE 127
+ + L +R +G+ L+ L PE+RF D S+ +++ L+ E
Sbjct: 62 QKTEAGLKAVTGLVRSELGKVLK-LYKTPEIRFERDRSVDYGNRIDQLLNQIHQKDQAE 119
>gi|260583742|ref|ZP_05851490.1| ribosome-binding factor A [Granulicatella elegans ATCC 700633]
gi|260158368|gb|EEW93436.1| ribosome-binding factor A [Granulicatella elegans ATCC 700633]
Length = 119
Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 55/120 (45%), Gaps = 8/120 (6%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP--LDVSP 68
R RV +E+ + ++ + +D + I+I+EV ++ DL++ATVY + L
Sbjct: 5 RVGRVSQEILREVNDILSK-KVRDPRVQE--ITITEVDVTGDLQIATVYYTTLQTLASER 61
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALEK 128
L + IR +G+ L +L PEL F+ D S+ + L+ I E+
Sbjct: 62 QATERGLEKSKGLIRRELGKRL-SLYKTPELIFKRDESVDYGNHIEELLKS--IQQEDEQ 118
>gi|313889630|ref|ZP_07823273.1| ribosome-binding factor A [Streptococcus pseudoporcinus SPIN 20026]
gi|313121927|gb|EFR45023.1| ribosome-binding factor A [Streptococcus pseudoporcinus SPIN 20026]
Length = 118
Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats.
Identities = 28/113 (24%), Positives = 53/113 (46%), Gaps = 6/113 (5%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD--V 66
+ R RVG E++ + ++ + +D + ++I+EV M DL A VY ++ D
Sbjct: 3 NHRIDRVGMEIKREVNEIL-QKKVRDPRVEG--VTITEVQMLGDLSAAKVYYTVMSDLAS 59
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ L I+ +GR+L + +P+L F D S+ K++ L+
Sbjct: 60 DNQKAQIGLEKATGTIKRELGRNL-TMYKIPDLIFEKDNSIAYGNKIDQLLRD 111
>gi|257865913|ref|ZP_05645566.1| ribosome-binding factor A [Enterococcus casseliflavus EC30]
gi|257872246|ref|ZP_05651899.1| ribosome-binding factor A [Enterococcus casseliflavus EC10]
gi|257875540|ref|ZP_05655193.1| ribosome-binding factor A [Enterococcus casseliflavus EC20]
gi|325569924|ref|ZP_08145918.1| ribosome-binding factor A [Enterococcus casseliflavus ATCC 12755]
gi|257799847|gb|EEV28899.1| ribosome-binding factor A [Enterococcus casseliflavus EC30]
gi|257806410|gb|EEV35232.1| ribosome-binding factor A [Enterococcus casseliflavus EC10]
gi|257809706|gb|EEV38526.1| ribosome-binding factor A [Enterococcus casseliflavus EC20]
gi|325157047|gb|EGC69215.1| ribosome-binding factor A [Enterococcus casseliflavus ATCC 12755]
Length = 116
Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats.
Identities = 26/110 (23%), Positives = 56/110 (50%), Gaps = 6/110 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD--VSP 68
R RV +E+ + ++ + +D + ++I++V ++ DL+ AT++ S D
Sbjct: 5 RDRRVAQEILKEVNQIL-RKKVRDPRVQD--VTITDVRVTGDLQQATIFYSTLTDLASDK 61
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ + L +R +G++L L VPE++F D S+Q K++ ++
Sbjct: 62 QKAQAGLEKATGLVRRELGQAL-TLYKVPEIQFELDESVQYGNKIDEMIR 110
>gi|222153579|ref|YP_002562756.1| ribosome-binding factor A [Streptococcus uberis 0140J]
gi|254789767|sp|B9DVB6|RBFA_STRU0 RecName: Full=Ribosome-binding factor A
gi|222114392|emb|CAR43151.1| ribosome-binding factor A [Streptococcus uberis 0140J]
Length = 116
Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats.
Identities = 27/112 (24%), Positives = 53/112 (47%), Gaps = 6/112 (5%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD--V 66
+ R RVG E++ + ++ + +D + ++I+EV M DL A VY ++ D
Sbjct: 3 NHRIDRVGMEIKREVNAIL-QKKVRDPRVEG--VTITEVQMLGDLSAAKVYYTVMSDLAS 59
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ L I+ +G++L + +P+L F D S+ K++ L+
Sbjct: 60 DNQKAQLGLEKATGTIKRELGKNL-TMYKIPDLIFEKDNSIAYGNKIDQLLR 110
>gi|182683490|ref|YP_001835237.1| ribosome-binding factor A [Streptococcus pneumoniae CGSP14]
gi|182628824|gb|ACB89772.1| ribosome-binding factor A [Streptococcus pneumoniae CGSP14]
Length = 125
Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats.
Identities = 28/111 (25%), Positives = 56/111 (50%), Gaps = 6/111 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD--VSP 68
R RVG E++ + ++ + +D + ++I++V M DL VA VY ++ +
Sbjct: 15 RTDRVGMEIKREVNEIL-QKKVRDPRVQG--VTITDVQMLGDLSVAKVYYTILSNLASDN 71
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+V L I+ +GR+L+ L +P+L F D S++ K++ ++
Sbjct: 72 QKVQIGLEKATGTIKRELGRNLK-LYKIPDLTFVKDESIEYGNKIDEMLRN 121
>gi|332522577|ref|ZP_08398829.1| ribosome-binding factor A [Streptococcus porcinus str. Jelinkova
176]
gi|332313841|gb|EGJ26826.1| ribosome-binding factor A [Streptococcus porcinus str. Jelinkova
176]
Length = 118
Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats.
Identities = 28/113 (24%), Positives = 53/113 (46%), Gaps = 6/113 (5%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD--V 66
+ R RVG E++ + ++ + +D + ++I+EV M DL A VY ++ D
Sbjct: 3 NHRIDRVGMEIKREVNEIL-QKKVRDPRVEG--VTITEVQMLGDLSAAKVYYTVMSDLAS 59
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ L I+ +GR+L + +P+L F D S+ K++ L+
Sbjct: 60 DNQKAQIGLEKATGTIKRELGRNL-TMYKIPDLIFEKDNSIAYGNKIDQLLRD 111
>gi|15618238|ref|NP_224523.1| ribosome-binding factor A [Chlamydophila pneumoniae CWL029]
gi|15835853|ref|NP_300377.1| ribosome-binding factor A [Chlamydophila pneumoniae J138]
gi|33241663|ref|NP_876604.1| ribosome-binding factor A [Chlamydophila pneumoniae TW-183]
gi|6685851|sp|Q9Z8M0|RBFA_CHLPN RecName: Full=Ribosome-binding factor A
gi|4376595|gb|AAD18467.1| Ribosome Binding Factor A [Chlamydophila pneumoniae CWL029]
gi|8978692|dbj|BAA98528.1| ribosome binding factor A [Chlamydophila pneumoniae J138]
gi|33236172|gb|AAP98261.1| ribosome-binding factor A [Chlamydophila pneumoniae TW-183]
gi|269303193|gb|ACZ33293.1| ribosome-binding factor A [Chlamydophila pneumoniae LPCoLN]
Length = 120
Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats.
Identities = 33/111 (29%), Positives = 56/111 (50%), Gaps = 3/111 (2%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDV 66
+RR RV ++ A+ VIL + + IS I+++ V +S DL A VY+S +P +
Sbjct: 3 ENRRIKRVNALLQEAIAKVILK-DVKHPKISNLWITVTRVSLSKDLHSARVYVSVMPHEN 61
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ + + AL + FI R +++ L+Y PEL F D + L+
Sbjct: 62 TKEEALEALKVSAGFIAHRASKNV-VLKYFPELHFYLDDIFSPQDYIENLL 111
>gi|238854738|ref|ZP_04645068.1| ribosome-binding factor A [Lactobacillus jensenii 269-3]
gi|260663970|ref|ZP_05864823.1| ribosome-binding factor A [Lactobacillus jensenii SJ-7A-US]
gi|282932871|ref|ZP_06338268.1| ribosome-binding factor A [Lactobacillus jensenii 208-1]
gi|238832528|gb|EEQ24835.1| ribosome-binding factor A [Lactobacillus jensenii 269-3]
gi|260561856|gb|EEX27825.1| ribosome-binding factor A [Lactobacillus jensenii SJ-7A-US]
gi|281302906|gb|EFA95111.1| ribosome-binding factor A [Lactobacillus jensenii 208-1]
Length = 118
Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats.
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 6/114 (5%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV--S 67
R RV E+ L ++ + +D +S ++++ V + D ATVY SL +
Sbjct: 3 HRIGRVEGEILRELSKIL-QKKIRDPRLSD--VTLTAVECTNDFSYATVYYSLLTEEGNK 59
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
V L +R +G+ L + VPEL F+ DTS+Q K++ L+ K
Sbjct: 60 EKEVAEGLEKAKGLMRHLLGQELTVYK-VPELIFKRDTSVQYGSKIDKLIAQLK 112
>gi|308050583|ref|YP_003914149.1| ribosome-binding factor A [Ferrimonas balearica DSM 9799]
gi|307632773|gb|ADN77075.1| ribosome-binding factor A [Ferrimonas balearica DSM 9799]
Length = 134
Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 61/120 (50%), Gaps = 6/120 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
+ R RVG++++ L +I+ E +D + +++++EV +S D+ A V+++ D
Sbjct: 2 AREFSRTRRVGQQLQRELA-MIIQREIRDERLG--MVTVNEVEVSRDMGYAKVFVTFLDD 58
Query: 66 --VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIP 123
+ R + AL IR ++ +R +PELRF YD SL ++ +L+ +
Sbjct: 59 NPEAVKRQMEALLELTPQIRMLTASRVK-MRVMPELRFTYDKSLVEGIRMASLVSQARSQ 117
>gi|253752510|ref|YP_003025651.1| ribosome-binding factor A [Streptococcus suis SC84]
gi|253754336|ref|YP_003027477.1| ribosome-binding factor A [Streptococcus suis P1/7]
gi|253756270|ref|YP_003029410.1| ribosome-binding factor A [Streptococcus suis BM407]
gi|172045634|sp|A4W3R6|RBFA_STRS2 RecName: Full=Ribosome-binding factor A
gi|172045638|sp|A4VXH2|RBFA_STRSY RecName: Full=Ribosome-binding factor A
gi|251816799|emb|CAZ52442.1| ribosome-binding factor A [Streptococcus suis SC84]
gi|251818734|emb|CAZ56570.1| ribosome-binding factor A [Streptococcus suis BM407]
gi|251820582|emb|CAR47338.1| ribosome-binding factor A [Streptococcus suis P1/7]
gi|319758919|gb|ADV70861.1| ribosome-binding factor A [Streptococcus suis JS14]
Length = 117
Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats.
Identities = 26/110 (23%), Positives = 53/110 (48%), Gaps = 6/110 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD--VSP 68
R RVG E++ + ++ + +D + ++I++V M DL A VY ++ +
Sbjct: 6 RTDRVGMEIKREVNEIL-QKKVRDPRVQG--VTITDVQMVGDLSTAKVYYTIMSNLASDN 62
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ + L I+ +GR L L +P+L F D S++ K++ ++
Sbjct: 63 QKAQTGLEKATGTIKRELGRKL-TLYKIPDLVFEKDQSIEYGNKIDQMLR 111
>gi|158523043|ref|YP_001530913.1| ribosome-binding factor A [Desulfococcus oleovorans Hxd3]
gi|238686917|sp|A8ZZ63|RBFA_DESOH RecName: Full=Ribosome-binding factor A
gi|158511869|gb|ABW68836.1| ribosome-binding factor A [Desulfococcus oleovorans Hxd3]
Length = 129
Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 5/120 (4%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD- 65
K+ RA R+G ++ + ++ D + D+ +I+ V +S DL VA VY +P D
Sbjct: 2 KSFPRADRIGSSIQRGVSEILRKG-LGDPRL--DMATITGVKVSRDLGVAYVYYVIPGDT 58
Query: 66 VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
+ FI+ + L+ ++Y+P++RFRYD S ++ ++ +
Sbjct: 59 AGRAAAAAGFKSAEGFIKRSLAGMLK-MKYMPDIRFRYDESFAYGQSIDTVLRELQTEKD 117
>gi|319939743|ref|ZP_08014100.1| ribosome-binding factor A [Streptococcus anginosus 1_2_62CV]
gi|319811081|gb|EFW07392.1| ribosome-binding factor A [Streptococcus anginosus 1_2_62CV]
Length = 116
Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats.
Identities = 26/110 (23%), Positives = 55/110 (50%), Gaps = 6/110 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD--VSP 68
R RVG E++ + ++ + +D + I+I++V M DL +A VY +L +
Sbjct: 6 RVDRVGMEIKREVNEIL-QKKVRDPRVQG--ITITDVQMLGDLSMAKVYYTLMSNLASEQ 62
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
++ L I+ +G +L+ + +P+L F D S++ K++ ++
Sbjct: 63 EKAQIGLEKAKGTIKRELGHNLK-MYKIPDLTFIKDESIEYGNKIDQMLR 111
>gi|306832822|ref|ZP_07465957.1| ribosome-binding factor A [Streptococcus bovis ATCC 700338]
gi|304425057|gb|EFM28188.1| ribosome-binding factor A [Streptococcus bovis ATCC 700338]
Length = 116
Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats.
Identities = 25/118 (21%), Positives = 57/118 (48%), Gaps = 6/118 (5%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD--V 66
+ R RVG E++ + ++ + +D + ++I++V M DL +A VY ++ +
Sbjct: 3 NHRVDRVGMEIKREVNEIL-QKKVRDPRVQD--VTITDVQMLGDLSMAKVYYTIHSELAS 59
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPV 124
+ + L I+ +GR+L + +P+L F D S++ K++ ++ +
Sbjct: 60 DNQKAQTGLEKAKGTIKRELGRNL-TMYKIPDLTFIKDESIEYGNKIDQMLRDLETKK 116
>gi|116515755|ref|YP_815989.1| ribosome-binding factor A [Streptococcus pneumoniae D39]
gi|29427722|sp|Q8DQV1|RBFA_STRR6 RecName: Full=Ribosome-binding factor A
gi|122279125|sp|Q04LV9|RBFA_STRP2 RecName: Full=Ribosome-binding factor A
gi|116076331|gb|ABJ54051.1| ribosome-binding factor A [Streptococcus pneumoniae D39]
Length = 116
Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 27/111 (24%), Positives = 55/111 (49%), Gaps = 6/111 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD--VSP 68
R RVG E++ + ++ + +D + ++I++V M DL VA VY ++ +
Sbjct: 6 RIDRVGMEIKREVNEIL-QKKVRDPRVQG--VTITDVQMLGDLSVAKVYYTILSNLASDN 62
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ L I+ +GR+L+ L +P+L F D S++ K++ ++
Sbjct: 63 QKAQIGLEKATGTIKRELGRNLK-LYKIPDLTFVKDESIEYGNKIDEMLRN 112
>gi|282600905|ref|ZP_05980081.2| ribosome-binding factor A [Subdoligranulum variabile DSM 15176]
gi|282570796|gb|EFB76331.1| ribosome-binding factor A [Subdoligranulum variabile DSM 15176]
Length = 121
Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 24/104 (23%), Positives = 53/104 (50%), Gaps = 4/104 (3%)
Query: 15 VGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-DVSPDRVIS 73
+ ++++ L+ +I E +D ++ +++++ + ++ DL A VYIS+ + P+ V+
Sbjct: 1 MAQDMKRELIAII--GEMKDPRVTGGLLTVTRLDVTPDLDQAKVYISVMGREGGPEPVVK 58
Query: 74 ALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
ALN +R + R + ++R P F D +N L+
Sbjct: 59 ALNKASGHVRTEVSRRM-HIRKAPRFVFVADEGAAYAAHINKLL 101
>gi|134295575|ref|YP_001119310.1| ribosome-binding factor A [Burkholderia vietnamiensis G4]
gi|166218426|sp|A4JDX2|RBFA_BURVG RecName: Full=Ribosome-binding factor A
gi|134138732|gb|ABO54475.1| ribosome-binding factor A [Burkholderia vietnamiensis G4]
Length = 132
Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 57/117 (48%), Gaps = 6/117 (5%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
M K + R +++ ++++ L +I+ E +D I +++I V ++ D A VY
Sbjct: 1 MSRKRTSPN-RNVQIADQIQRDLSELIMR-EVKDPRIG--IVTIQSVELTPDYAHAKVYF 56
Query: 61 SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ P++ ALN + + + L ++ VP L F YD +++ +++ L+
Sbjct: 57 TALTG-DPEKTQEALNHASGHLHNLLFKRL-HIHTVPTLHFHYDQTIEKAVEMSRLI 111
>gi|83749676|ref|ZP_00946657.1| Ribosome-binding factor A [Ralstonia solanacearum UW551]
gi|207743361|ref|YP_002259753.1| ribosome-binding factor a protein [Ralstonia solanacearum IPO1609]
gi|300704335|ref|YP_003745938.1| ribosome-binding factor a [Ralstonia solanacearum CFBP2957]
gi|83723678|gb|EAP70875.1| Ribosome-binding factor A [Ralstonia solanacearum UW551]
gi|206594758|emb|CAQ61685.1| ribosome-binding factor a protein [Ralstonia solanacearum IPO1609]
gi|299071999|emb|CBJ43329.1| Ribosome-binding factor A [Ralstonia solanacearum CFBP2957]
Length = 123
Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 27/127 (21%), Positives = 61/127 (48%), Gaps = 5/127 (3%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
M K+ S R +R+ ++++ L +I E ++ + ++++ V ++ D A +Y
Sbjct: 1 MPKKSGSASGRNVRIADQIQRDLAELIQR-EIKNPAMG--LVTLQSVSLTPDYAHAKIYF 57
Query: 61 SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
++ L PD + LN ++ + + L ++ VP L F YD S++ +++ L+
Sbjct: 58 TV-LGAEPDAAAAILNEKAGYLHSLLFKRL-HIHTVPMLHFHYDGSVERGIEMSRLIDEA 115
Query: 121 KIPVALE 127
A +
Sbjct: 116 NATRAKD 122
>gi|256851255|ref|ZP_05556644.1| ribosome-binding factor A [Lactobacillus jensenii 27-2-CHN]
gi|260660679|ref|ZP_05861594.1| ribosome-binding factor A [Lactobacillus jensenii 115-3-CHN]
gi|282934723|ref|ZP_06339966.1| ribosome-binding factor A [Lactobacillus jensenii 208-1]
gi|297206122|ref|ZP_06923517.1| ribosome-binding factor A [Lactobacillus jensenii JV-V16]
gi|256616317|gb|EEU21505.1| ribosome-binding factor A [Lactobacillus jensenii 27-2-CHN]
gi|260548401|gb|EEX24376.1| ribosome-binding factor A [Lactobacillus jensenii 115-3-CHN]
gi|281301298|gb|EFA93599.1| ribosome-binding factor A [Lactobacillus jensenii 208-1]
gi|297149248|gb|EFH29546.1| ribosome-binding factor A [Lactobacillus jensenii JV-V16]
Length = 118
Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 32/114 (28%), Positives = 52/114 (45%), Gaps = 6/114 (5%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP--LDVS 67
R RV E+ L ++ + +D +S ++++ V + D ATVY SL
Sbjct: 3 HRIGRVEGEILRELSKIL-QKKIRDPRLSD--VTLTAVECTNDFSYATVYYSLLTEDGNK 59
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
V L +R +G+ L + VPEL F+ DTS+Q K++ L+ K
Sbjct: 60 EKEVAEGLEKAKGLMRHLLGQELTVYK-VPELIFKRDTSVQYGSKIDKLIAQLK 112
>gi|167836820|ref|ZP_02463703.1| ribosome-binding factor A [Burkholderia thailandensis MSMB43]
Length = 138
Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 27/127 (21%), Positives = 57/127 (44%), Gaps = 6/127 (4%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
M K + R +++ ++++ L +I+ E +D I +++I V ++ D A VY
Sbjct: 17 MSKKRSSPN-RNVQIADQIQRDLSELIMR-EVKDPRIG--IVTIQSVELTPDYAHAKVYF 72
Query: 61 SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
+ +P ALN + + + L ++ VP L F YD +++ ++ L+
Sbjct: 73 TALTG-NPADTQEALNHAAGHLHNLLFKRL-HIHTVPTLHFHYDQTIEKAVAMSRLIDEA 130
Query: 121 KIPVALE 127
A +
Sbjct: 131 NATRAKD 137
>gi|157150185|ref|YP_001449863.1| ribosome-binding factor A [Streptococcus gordonii str. Challis
substr. CH1]
gi|262282175|ref|ZP_06059944.1| ribosome-binding factor A [Streptococcus sp. 2_1_36FAA]
gi|189039565|sp|A8AVQ3|RBFA_STRGC RecName: Full=Ribosome-binding factor A
gi|157074979|gb|ABV09662.1| ribosome-binding factor A [Streptococcus gordonii str. Challis
substr. CH1]
gi|262262629|gb|EEY81326.1| ribosome-binding factor A [Streptococcus sp. 2_1_36FAA]
Length = 115
Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 25/111 (22%), Positives = 54/111 (48%), Gaps = 6/111 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD--VSP 68
R RVG E++ + ++ + +D + ++I++V M DL +A VY ++ D
Sbjct: 6 RVDRVGMEIKREVNEIL-QKKVRDPRVQG--VTITDVQMLGDLSMAKVYYTIMSDLASDN 62
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ L I+ +G +L+ + +P+L F D S++ K++ ++
Sbjct: 63 QKAQLGLEKATGTIKRELGHNLK-MYKIPDLTFVKDQSIEYGNKIDQMLRD 112
>gi|187923625|ref|YP_001895267.1| ribosome-binding factor A [Burkholderia phytofirmans PsJN]
gi|238689603|sp|B2T382|RBFA_BURPP RecName: Full=Ribosome-binding factor A
gi|187714819|gb|ACD16043.1| ribosome-binding factor A [Burkholderia phytofirmans PsJN]
Length = 121
Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 26/127 (20%), Positives = 58/127 (45%), Gaps = 7/127 (5%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
M K + R +++ ++++ L ++ E +D I +++I V ++ D A VY
Sbjct: 1 MPKKRSSPN-RNVQIADQIQRDLSDLL--REVKDPRIG--IVTIQSVELTPDYAHAKVYF 55
Query: 61 SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
+ P + + AL + ++ + L ++ VP L F YD +++ +++ L+
Sbjct: 56 TTLTG-DPQQTLEALTHAAGHLHNQLFKRL-HIHTVPTLHFHYDKTIERAVEMSRLIDEA 113
Query: 121 KIPVALE 127
A E
Sbjct: 114 NANRAKE 120
>gi|288904589|ref|YP_003429810.1| ribosome-binding factor A [Streptococcus gallolyticus UCN34]
gi|306830584|ref|ZP_07463751.1| ribosome-binding factor A [Streptococcus gallolyticus subsp.
gallolyticus TX20005]
gi|325977563|ref|YP_004287279.1| ribosome-binding factor A [Streptococcus gallolyticus subsp.
gallolyticus ATCC BAA-2069]
gi|288731314|emb|CBI12865.1| ribosome-binding factor A [Streptococcus gallolyticus UCN34]
gi|304427302|gb|EFM30407.1| ribosome-binding factor A [Streptococcus gallolyticus subsp.
gallolyticus TX20005]
gi|325177491|emb|CBZ47535.1| rbfA [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069]
Length = 116
Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 25/118 (21%), Positives = 57/118 (48%), Gaps = 6/118 (5%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD--V 66
+ R RVG E++ + ++ + +D + ++I++V M DL +A VY ++ +
Sbjct: 3 NHRVDRVGMEIKREVNEIL-QKKVRDPRVQD--VTITDVQMLGDLSMAKVYYTIHSELAS 59
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPV 124
+ + L I+ +GR+L + +P+L F D S++ K++ ++ +
Sbjct: 60 DNQKAQTGLEKAKGTIKRELGRNL-TMYKIPDLTFIKDESIEYGNKIDQMLRDLEAKK 116
>gi|223934083|ref|ZP_03626032.1| ribosome-binding factor A [Streptococcus suis 89/1591]
gi|330833469|ref|YP_004402294.1| ribosome-binding factor A [Streptococcus suis ST3]
gi|223897253|gb|EEF63665.1| ribosome-binding factor A [Streptococcus suis 89/1591]
gi|329307692|gb|AEB82108.1| ribosome-binding factor A [Streptococcus suis ST3]
Length = 117
Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 26/110 (23%), Positives = 54/110 (49%), Gaps = 6/110 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD--VSP 68
R RVG E++ + ++ + +D + ++I++V M DL +A VY ++ +
Sbjct: 6 RTDRVGMEIKREVNEIL-QKKVRDPRVQG--VTITDVQMVGDLSMAKVYYTIMSNLASDN 62
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ + L I+ +GR L L +P+L F D S++ K++ ++
Sbjct: 63 QKAQTGLEKATGTIKRELGRKL-TLYKIPDLVFEKDQSIEYGNKIDQMLR 111
>gi|89898350|ref|YP_515460.1| ribosome-binding factor A [Chlamydophila felis Fe/C-56]
gi|123483300|sp|Q254H3|RBFA_CHLFF RecName: Full=Ribosome-binding factor A
gi|89331722|dbj|BAE81315.1| ribosome binding factor A [Chlamydophila felis Fe/C-56]
Length = 120
Score = 102 bits (256), Expect = 2e-20, Method: Composition-based stats.
Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 3/111 (2%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDV 66
+RR +V +R A+ VIL + + IS I+++ VC+S DL A VY+S +P +
Sbjct: 3 ENRRIQKVNSLIREAIANVILK-DVKHPKISNRWITVTRVCLSKDLHTARVYVSIMPHEN 61
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ + AL + FI R + + L+Y PE+ F + + L+
Sbjct: 62 TSAETLKALKASAGFIAYRASKGV-FLKYFPEISFYLEDIFSPQDHIENLL 111
>gi|116629472|ref|YP_814644.1| ribosome-binding factor A [Lactobacillus gasseri ATCC 33323]
gi|238852622|ref|ZP_04643032.1| ribosome-binding factor A [Lactobacillus gasseri 202-4]
gi|282850810|ref|ZP_06260184.1| ribosome-binding factor A [Lactobacillus gasseri 224-1]
gi|300361898|ref|ZP_07058075.1| ribosome-binding factor A [Lactobacillus gasseri JV-V03]
gi|311110882|ref|ZP_07712279.1| ribosome-binding factor A [Lactobacillus gasseri MV-22]
gi|122273590|sp|Q044B6|RBFA_LACGA RecName: Full=Ribosome-binding factor A
gi|116095054|gb|ABJ60206.1| ribosome-binding factor A [Lactobacillus gasseri ATCC 33323]
gi|238834768|gb|EEQ26995.1| ribosome-binding factor A [Lactobacillus gasseri 202-4]
gi|282557762|gb|EFB63350.1| ribosome-binding factor A [Lactobacillus gasseri 224-1]
gi|300354517|gb|EFJ70388.1| ribosome-binding factor A [Lactobacillus gasseri JV-V03]
gi|311066036|gb|EFQ46376.1| ribosome-binding factor A [Lactobacillus gasseri MV-22]
Length = 123
Score = 102 bits (256), Expect = 2e-20, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 57/121 (47%), Gaps = 7/121 (5%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV--S 67
R RV E+ L ++ + +D +S I+I+ V + DL AT+Y SL +
Sbjct: 3 HRIGRVEGEILRELTKIL-RKDIRDPRLSD--ITITAVECTNDLSYATIYYSLLTEDPAK 59
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALE 127
V L+ +R +G++L + VPEL F+ DTS+ K++ L+ K E
Sbjct: 60 EKEVAEGLDKAKGMMRHLLGQTLTVYK-VPELIFKRDTSVAYGSKIDNLINQVK-KQDQE 117
Query: 128 K 128
+
Sbjct: 118 R 118
>gi|313906210|ref|ZP_07839556.1| ribosome-binding factor A [Eubacterium cellulosolvens 6]
gi|313468940|gb|EFR64296.1| ribosome-binding factor A [Eubacterium cellulosolvens 6]
Length = 129
Score = 102 bits (256), Expect = 2e-20, Method: Composition-based stats.
Identities = 35/110 (31%), Positives = 56/110 (50%), Gaps = 4/110 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
KNS + R+ E V+ L +I N +D I+ + S++E ++ DL+ V IS+ D
Sbjct: 3 KNSVKNTRINEAVKEELSSII-RNSVKDPRIA-MMTSVTEAIVAPDLKTCKVMISVLGDE 60
Query: 67 SPD-RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNA 115
++ L + KFIR + L NLR PEL FR D S++ ++
Sbjct: 61 KAKSDTMTGLRSSAKFIRHELAVRL-NLRNTPELTFRLDESIEYGVNMSK 109
>gi|330813315|ref|YP_004357554.1| translation initiation factor 2 [Candidatus Pelagibacter sp.
IMCC9063]
gi|327486410|gb|AEA80815.1| translation initiation factor 2 [Candidatus Pelagibacter sp.
IMCC9063]
Length = 125
Score = 102 bits (256), Expect = 2e-20, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
Query: 3 NKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL 62
N + ++R L+ GE ++ + + + ++ IS I+I+EV +S DLR A VY
Sbjct: 5 NTSKPLTQRQLKAGENLKKIIANIFIKDQIVLPDISTRNITITEVRVSPDLRHAIVYFIP 64
Query: 63 PLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ LN ++ R+ +S + +++P+LRF D S + L+
Sbjct: 65 LSGDKSEIAFKTLNQFSYEVKKRV-KSSWSAKFLPDLRFVLDKSFDYAENIEKLIST 120
>gi|297519671|ref|ZP_06938057.1| ribosome-binding factor A [Escherichia coli OP50]
Length = 85
Score = 102 bits (256), Expect = 2e-20, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K R RV +E++ + +IL E +D + + ++S V MS DL A VY++ D
Sbjct: 2 AKEFGRPQRVAQEMQKEIA-LILQREIKDPRLG-MMTTVSGVEMSRDLAYAKVYVTFLND 59
Query: 66 VSPDRV---ISALNCNIKFIRGRIGR 88
D V I AL FIR +G+
Sbjct: 60 KDEDAVKAGIKALQEASGFIRSLLGK 85
>gi|332298596|ref|YP_004440518.1| Ribosome-binding factor A [Treponema brennaborense DSM 12168]
gi|332181699|gb|AEE17387.1| Ribosome-binding factor A [Treponema brennaborense DSM 12168]
Length = 123
Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 61/118 (51%), Gaps = 3/118 (2%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
+S R +R+GE++R + +IL + +D +S +S++ V +S DL A VY+S + V
Sbjct: 1 MSSFRLIRLGEQIREEISRMILTRQIKDPRVST-FLSVNRVDVSGDLGYAKVYVSSFMSV 59
Query: 67 SP-DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIP 123
+ + L FI+ I + L +R P+L F D S++ +++ + ++
Sbjct: 60 KETENGVKGLQNAAGFIQSTIAKKL-TIRQFPKLSFILDQSIKEGFEMVRKLNDLELQ 116
>gi|307730027|ref|YP_003907251.1| ribosome-binding factor A [Burkholderia sp. CCGE1003]
gi|323525726|ref|YP_004227879.1| ribosome-binding factor A [Burkholderia sp. CCGE1001]
gi|307584562|gb|ADN57960.1| ribosome-binding factor A [Burkholderia sp. CCGE1003]
gi|323382728|gb|ADX54819.1| ribosome-binding factor A [Burkholderia sp. CCGE1001]
Length = 121
Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats.
Identities = 25/127 (19%), Positives = 59/127 (46%), Gaps = 7/127 (5%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
M K + R +++ ++++ L ++ E +D I +++I V ++ D A VY
Sbjct: 1 MPKKRSSPN-RNVQIADQIQRDLSELL--REVKDPRIG--IVTIQSVELTPDYAHAKVYF 55
Query: 61 SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
+ P + ++AL + ++ + L ++ VP L F YD +++ +++ L+
Sbjct: 56 TTLTG-DPQQTLAALTHAAGHLHNQLFKRL-HIHTVPTLHFHYDKTIERAVEMSRLIDEA 113
Query: 121 KIPVALE 127
A +
Sbjct: 114 NASRAKD 120
>gi|319762635|ref|YP_004126572.1| ribosome-binding factor a [Alicycliphilus denitrificans BC]
gi|330824725|ref|YP_004388028.1| ribosome-binding factor A [Alicycliphilus denitrificans K601]
gi|317117196|gb|ADU99684.1| ribosome-binding factor A [Alicycliphilus denitrificans BC]
gi|329310097|gb|AEB84512.1| ribosome-binding factor A [Alicycliphilus denitrificans K601]
Length = 126
Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 53/119 (44%), Gaps = 6/119 (5%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
M K R +V ++++ L +I + +D I + ++ V ++ D A V+
Sbjct: 1 MAAKKSSTPNRGFKVADQIQRDLAELI--RDLKDPRIG--MCTLQAVEVTPDYAHAKVFF 56
Query: 61 SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
S+ + ALN F+R + + L ++ VP L F +D + + +NAL+
Sbjct: 57 SVLVG-DGQATQEALNQAAGFLRNGLFKRL-SIHTVPTLHFVFDRTTERASDMNALIAR 113
>gi|83654922|gb|ABC38985.1| ribosome-binding factor A [Burkholderia thailandensis E264]
Length = 138
Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats.
Identities = 27/127 (21%), Positives = 57/127 (44%), Gaps = 6/127 (4%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
M K + R +++ ++++ L +I+ E +D I +++I V ++ D A VY
Sbjct: 17 MSKKRSSPN-RNVQIADQIQRDLSELIMR-EVKDPRIG--IVTIQSVELTPDYAHAKVYF 72
Query: 61 SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
+ +P ALN + + + L ++ VP L F YD +++ ++ L+
Sbjct: 73 TALTG-NPADTQEALNHAAGHLHNLLFKRL-HIHTVPTLHFHYDQTIEKAVAMSRLIDEA 130
Query: 121 KIPVALE 127
A +
Sbjct: 131 NATRAKD 137
>gi|326316667|ref|YP_004234339.1| ribosome-binding factor A [Acidovorax avenae subsp. avenae ATCC
19860]
gi|323373503|gb|ADX45772.1| ribosome-binding factor A [Acidovorax avenae subsp. avenae ATCC
19860]
Length = 125
Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 54/119 (45%), Gaps = 6/119 (5%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
M K R +V ++++ L +I E +D I + ++ V ++ D A V+
Sbjct: 1 MAAKKSSTPNRGFKVADQIQRDLTELI--RELKDPRIG--MCTLQAVEVTPDYAHAKVFF 56
Query: 61 SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
S+ + D ALN F+R + + L ++ VP L F +D + + +NAL+
Sbjct: 57 SVLVG-DADATQDALNQAAGFLRNGLFKRL-HIHTVPTLHFMFDRTTERASDMNALIAR 113
>gi|221214878|ref|ZP_03587846.1| ribosome-binding factor A [Burkholderia multivorans CGD1]
gi|221165105|gb|EED97583.1| ribosome-binding factor A [Burkholderia multivorans CGD1]
Length = 166
Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats.
Identities = 27/127 (21%), Positives = 56/127 (44%), Gaps = 6/127 (4%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
M K + R +++ ++++ L +I+ E +D I +++I V ++ D A VY
Sbjct: 35 MSRKRTSPN-RNVQIADQIQRDLSELIMR-EVKDPRIG--IVTIQSVELTPDYAHAKVYF 90
Query: 61 SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
+ P ALN + + + L ++ VP L F YD +++ ++ L+
Sbjct: 91 TTLTG-DPAATQQALNHASGHLHNLLFKRL-HIHTVPALHFHYDQTIEKAVAMSRLIDEA 148
Query: 121 KIPVALE 127
A +
Sbjct: 149 NATRAKD 155
>gi|224080508|ref|XP_002306146.1| predicted protein [Populus trichocarpa]
gi|222849110|gb|EEE86657.1| predicted protein [Populus trichocarpa]
Length = 166
Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats.
Identities = 35/129 (27%), Positives = 65/129 (50%), Gaps = 15/129 (11%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQ------------DRLISRDVISISEVCMSVDLRVAT 57
RR V ++++ L ++L ++ D+ +S + +IS+V +S DL+V
Sbjct: 5 RRVKMVAKQIQRELSDMLLTDKVLQYAVLPEAALGADKYLSS-LTTISDVEVSADLQVVK 63
Query: 58 VYISLPLDVSPDRV-ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNAL 116
VY+S+ D V I+ L K++R ++GR ++ LR PE+RF D L+ ++ A+
Sbjct: 64 VYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMK-LRLTPEIRFIEDEGLERGSRVIAI 122
Query: 117 MCLPKIPVA 125
+ K
Sbjct: 123 LDRIKAEKD 131
>gi|206559874|ref|YP_002230638.1| ribosome-binding factor A [Burkholderia cenocepacia J2315]
gi|238693074|sp|B4E7L2|RBFA_BURCJ RecName: Full=Ribosome-binding factor A
gi|198035915|emb|CAR51807.1| putative ribosome-binding factor [Burkholderia cenocepacia J2315]
Length = 132
Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 57/117 (48%), Gaps = 6/117 (5%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
M K + R +++ ++++ L +I+ E +D I +++I V ++ D A VY
Sbjct: 1 MSRKRTSPN-RNVQIADQIQRDLSELIMR-EVKDPRIG--IVTIQSVELTPDYAHAKVYF 56
Query: 61 SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ PD+ ALN + + + L ++ VP L F YD +++ +++ L+
Sbjct: 57 TALTG-DPDKTQEALNHASGHLHNLLFKRL-HIHTVPTLHFHYDQTIEKAVEMSRLI 111
>gi|270292195|ref|ZP_06198410.1| ribosome-binding factor A [Streptococcus sp. M143]
gi|270279723|gb|EFA25565.1| ribosome-binding factor A [Streptococcus sp. M143]
Length = 125
Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats.
Identities = 27/111 (24%), Positives = 55/111 (49%), Gaps = 6/111 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD--VSP 68
R RVG E++ + ++ + +D + ++I++V M DL VA VY ++ +
Sbjct: 15 RTDRVGMEIKREVNEIL-QKKVRDPRVQG--VTITDVQMLGDLSVAKVYYTILSNLASDN 71
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ L I+ +GR+L+ L +P+L F D S++ K++ ++
Sbjct: 72 QKAQIGLEKATGTIKRELGRNLK-LYKIPDLTFVKDESIEYGNKIDEMLRN 121
>gi|170727893|ref|YP_001761919.1| ribosome-binding factor A [Shewanella woodyi ATCC 51908]
gi|238688729|sp|B1KRQ9|RBFA_SHEWM RecName: Full=Ribosome-binding factor A
gi|169813240|gb|ACA87824.1| ribosome-binding factor A [Shewanella woodyi ATCC 51908]
Length = 140
Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats.
Identities = 24/92 (26%), Positives = 49/92 (53%), Gaps = 5/92 (5%)
Query: 30 NEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP--DRVISALNCNIKFIRGRIG 87
+ +D I ++++++V +S DL A V+++ + S + + AL ++R +
Sbjct: 25 RDIKDPRIG--MVTVNDVEVSRDLSYAKVFVTFFEEDSKLVEEKLEALTTASGYVRSLVA 82
Query: 88 RSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
++ LR +PELRF YD SL +++ L+
Sbjct: 83 GRMK-LRVMPELRFVYDASLVEGMRMSNLVTR 113
>gi|330718228|ref|ZP_08312828.1| ribosome-binding factor A [Leuconostoc fallax KCTC 3537]
Length = 117
Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats.
Identities = 29/110 (26%), Positives = 55/110 (50%), Gaps = 6/110 (5%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD--VS 67
+RA R+ +E++ + ++L +D + ++I+ V ++ DL+ AT+Y S+ D
Sbjct: 5 QRAGRLSQEIQRDVTDLLLKR-VRDPRVQD--VTITSVDVTGDLQGATIYYSILSDLASD 61
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ L IR +G L + +PEL+F DTS+Q + L+
Sbjct: 62 AKKAQDGLEAATGLIRKELGSRLTVYK-IPELKFVRDTSVQYGNHIEELI 110
>gi|309799818|ref|ZP_07694025.1| ribosome-binding factor A [Streptococcus infantis SK1302]
gi|308116534|gb|EFO54003.1| ribosome-binding factor A [Streptococcus infantis SK1302]
Length = 125
Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats.
Identities = 27/111 (24%), Positives = 55/111 (49%), Gaps = 6/111 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD--VSP 68
R RVG E++ + ++ + +D + ++I++V M DL VA VY ++ +
Sbjct: 15 RTDRVGMEIKREVNEIL-QKKVRDPRVQG--VTITDVQMLGDLSVAKVYYTILSNLASDN 71
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ L I+ +GR+L+ L +P+L F D S++ K++ ++
Sbjct: 72 QKAQIGLEKATGTIKRELGRNLK-LYKIPDLTFVKDESIEYGNKIDEMLRN 121
>gi|229820974|ref|YP_002882500.1| ribosome-binding factor A [Beutenbergia cavernae DSM 12333]
gi|259551951|sp|C5BWS2|RBFA_BEUC1 RecName: Full=Ribosome-binding factor A
gi|229566887|gb|ACQ80738.1| ribosome-binding factor A [Beutenbergia cavernae DSM 12333]
Length = 159
Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats.
Identities = 21/113 (18%), Positives = 54/113 (47%), Gaps = 5/113 (4%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
+ RA R+G+ ++ + ++ +D + +++++V ++ DL+ ATV+ ++ D
Sbjct: 2 SGNSRATRLGDRIKEIVATMLERR-IKDPRLG--FVTVTDVELTGDLQHATVFYTVLGDA 58
Query: 67 SP-DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+AL +R +G+ +++ P L F+ D + Q+ + +
Sbjct: 59 EELASSTAALESAKGLLRSEVGKQ-TGVKHTPTLTFQLDATPQNAAHVEEALR 110
>gi|55820438|ref|YP_138880.1| ribosome-binding factor A [Streptococcus thermophilus LMG 18311]
gi|55822322|ref|YP_140763.1| ribosome-binding factor A [Streptococcus thermophilus CNRZ1066]
gi|116627262|ref|YP_819881.1| ribosome-binding factor A [Streptococcus thermophilus LMD-9]
gi|61214692|sp|Q5M1B8|RBFA_STRT1 RecName: Full=Ribosome-binding factor A
gi|61214694|sp|Q5M5V4|RBFA_STRT2 RecName: Full=Ribosome-binding factor A
gi|122268135|sp|Q03M87|RBFA_STRTD RecName: Full=Ribosome-binding factor A
gi|55736423|gb|AAV60065.1| ribosome binding factor A [Streptococcus thermophilus LMG 18311]
gi|55738307|gb|AAV61948.1| ribosome binding factor A [Streptococcus thermophilus CNRZ1066]
gi|116100539|gb|ABJ65685.1| ribosome-binding factor A [Streptococcus thermophilus LMD-9]
gi|312277746|gb|ADQ62403.1| Ribosome-binding factor A [Streptococcus thermophilus ND03]
Length = 117
Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 57/117 (48%), Gaps = 6/117 (5%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP--L 64
NS R RVG E++ + ++ + +D + ++I++V M DL A V+ ++ L
Sbjct: 2 GNSFRVDRVGMEIKREVNEIL-QKKVRDPRVQN--VTITDVQMLGDLSAAKVFYTIHSTL 58
Query: 65 DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+ + L I+ +G++L + +P+L F D S++ K++ ++ +
Sbjct: 59 ASDNQKAQTGLEKATGTIKRELGKNL-TMYKIPDLIFIKDESIEYGNKIDEMLRNLE 114
>gi|260061333|ref|YP_003194413.1| ribosome-binding factor A [Robiginitalea biformata HTCC2501]
gi|88785465|gb|EAR16634.1| ribosome-binding factor A [Robiginitalea biformata HTCC2501]
Length = 135
Score = 101 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 55/119 (46%), Gaps = 2/119 (1%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS 67
++R ++ ++ L ++ D + ++S+++V ++ DL +A VY+S+
Sbjct: 7 ETQRQKKIAGLLQQDLAEMLQRAAV-DGGLQGIILSVTKVHVTSDLSIAKVYVSIFPVKE 65
Query: 68 PDRVISALNCNIKFIRGRIGRSLRN-LRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
+I + R + R RN LR VPEL+F D SL+ + + + P+
Sbjct: 66 ATGLIKGIQAQKAQFRHELARRTRNQLRRVPELQFYLDDSLEYIENIEKSLKEGEDPIE 124
>gi|254432465|ref|ZP_05046168.1| ribosome-binding factor A [Cyanobium sp. PCC 7001]
gi|197626918|gb|EDY39477.1| ribosome-binding factor A [Cyanobium sp. PCC 7001]
Length = 132
Score = 101 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 22/111 (19%), Positives = 56/111 (50%), Gaps = 3/111 (2%)
Query: 12 ALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDVSPDR 70
RV +R + +++ +D +++ ++S++ V ++ DL+ +++S+ D +
Sbjct: 1 MERVASLIRREVSELLVAG-IKDERVAQGMVSVTRVEVAGDLQHCKIHVSVYGSDAERQQ 59
Query: 71 VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
++ L +++G + R L+ +R PE+ FR D L+ + L+ +
Sbjct: 60 AMAGLQSAAAYVKGELSRRLK-MRRTPEVMFRLDRGLEQGTSVLGLLNRLE 109
>gi|34540680|ref|NP_905159.1| ribosome-binding factor A [Porphyromonas gingivalis W83]
gi|188994888|ref|YP_001929140.1| putative ribosome-binding factor A [Porphyromonas gingivalis ATCC
33277]
gi|4586219|emb|CAB40971.1| RBFA, putative [Porphyromonas gingivalis]
gi|34396994|gb|AAQ66058.1| ribosome-binding factor A [Porphyromonas gingivalis W83]
gi|188594568|dbj|BAG33543.1| putative ribosome-binding factor A [Porphyromonas gingivalis ATCC
33277]
Length = 111
Score = 101 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 25/114 (21%), Positives = 57/114 (50%), Gaps = 4/114 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
+++R ++ ++ L + L + + ++S++ V +S DL +A +++S+
Sbjct: 1 MDNKRLSKIERLLQKELSEIFLRDAKS---LPGVIVSVTNVRVSPDLSIARIHLSIFPSE 57
Query: 67 SPDRVISALNCNIKFIRGRIGRSLR-NLRYVPELRFRYDTSLQSYWKLNALMCL 119
++ ++ N K IR +G+ +R LR +P+L F D SL ++ L+
Sbjct: 58 KSSEILESIKHNTKTIRYDLGQQVRTQLRKIPDLTFYIDDSLDYLENIDRLLNQ 111
>gi|186476486|ref|YP_001857956.1| ribosome-binding factor A [Burkholderia phymatum STM815]
gi|184192945|gb|ACC70910.1| ribosome-binding factor A [Burkholderia phymatum STM815]
Length = 143
Score = 101 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 26/127 (20%), Positives = 56/127 (44%), Gaps = 7/127 (5%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
M K + R +++ ++++ L +I E +D I +++ V ++ D A VY
Sbjct: 23 MPKKRTSPN-RNVQIADQIQRDLSELI--REVKDPRIG--IVTFQSVELTPDYAHAKVYF 77
Query: 61 SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
+ P + ALN + + + L ++ VP L F YD +++ +++ L+
Sbjct: 78 TTLTG-DPHQTQDALNHAAGHLHNLLFKRL-HIHTVPTLHFHYDKTIERAVEMSRLIDEA 135
Query: 121 KIPVALE 127
A +
Sbjct: 136 NASRAKD 142
>gi|116490514|ref|YP_810058.1| ribosome-binding factor A [Oenococcus oeni PSU-1]
gi|290889914|ref|ZP_06553001.1| hypothetical protein AWRIB429_0391 [Oenococcus oeni AWRIB429]
gi|122277299|sp|Q04GM9|RBFA_OENOB RecName: Full=Ribosome-binding factor A
gi|116091239|gb|ABJ56393.1| ribosome-binding factor A [Oenococcus oeni PSU-1]
gi|290480524|gb|EFD89161.1| hypothetical protein AWRIB429_0391 [Oenococcus oeni AWRIB429]
Length = 121
Score = 101 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 24/112 (21%), Positives = 55/112 (49%), Gaps = 6/112 (5%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD--V 66
S R LRV ++ + +++ E D + ++I+ + M+ D +A VY ++ D
Sbjct: 7 SARLLRVEGTIQREISEILVK-EVSDPRLKD--VTITGIDMTPDFSIAYVYWTIYSDLAS 63
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
S ++ + L I+ ++ R + + +P+L F+ DT+++ + L+
Sbjct: 64 SGEKADAGLQAAKGLIKRQLARKMTTFK-IPDLIFKRDTAIEYGDHIEQLIA 114
>gi|332528131|ref|ZP_08404162.1| ribosome-binding factor A [Rubrivivax benzoatilyticus JA2]
gi|332112702|gb|EGJ12495.1| ribosome-binding factor A [Rubrivivax benzoatilyticus JA2]
Length = 121
Score = 101 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 30/107 (28%), Positives = 56/107 (52%), Gaps = 6/107 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
R+ RV ++++ L +I E +D I +++++ V +S D A VY S+ + S +
Sbjct: 10 RSFRVADQIQRDLAELI--RELKDPRIG--MVTLNSVEVSPDYAHAQVYFSVLVG-SAED 64
Query: 71 VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ALN F+R + + L + VP L F +D + + L+AL+
Sbjct: 65 SATALNEAAGFLRNGLFKRL-AIHTVPTLHFHFDRTTERAADLSALI 110
>gi|312862520|ref|ZP_07722762.1| ribosome-binding factor A [Streptococcus vestibularis F0396]
gi|322517409|ref|ZP_08070282.1| ribosome-binding factor A [Streptococcus vestibularis ATCC 49124]
gi|311101925|gb|EFQ60126.1| ribosome-binding factor A [Streptococcus vestibularis F0396]
gi|322123891|gb|EFX95450.1| ribosome-binding factor A [Streptococcus vestibularis ATCC 49124]
Length = 117
Score = 101 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 57/117 (48%), Gaps = 6/117 (5%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP--L 64
NS R RVG E++ + ++ + +D + ++I++V M DL A V+ ++ L
Sbjct: 2 GNSFRVDRVGMEIKREVNEIL-QKKVRDPRVQD--VTITDVQMLGDLSAAKVFYTIHSTL 58
Query: 65 DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+ + L I+ +G+SL + +P+L F D S++ K++ ++ +
Sbjct: 59 ASDNQKAQTGLEKATGTIKRELGKSL-TMYKIPDLTFIKDESIEYGNKIDEMLRNLE 114
>gi|317495164|ref|ZP_07953534.1| ribosome-binding protein A [Gemella moribillum M424]
gi|316914586|gb|EFV36062.1| ribosome-binding protein A [Gemella moribillum M424]
Length = 117
Score = 101 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 20/119 (16%), Positives = 56/119 (47%), Gaps = 7/119 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV-SPD 69
R R+ E+++ + +V+ + ++ + ++++EV ++ D A VY ++ +
Sbjct: 5 RVNRLAEQIKKEITYVLA-TKVKNHDLG--FVTVTEVSLTGDYSQAKVYYTVLGGEREKE 61
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALEK 128
+ + F++ + + ++ +R PEL F YD + + + +L+ + E+
Sbjct: 62 KTKESFKKIKGFVKSEVAKKIK-IRKFPELIFEYDKTAEYALHIESLIAS--VSQKEEE 117
>gi|227892597|ref|ZP_04010402.1| ribosome-binding factor A [Lactobacillus ultunensis DSM 16047]
gi|227865582|gb|EEJ73003.1| ribosome-binding factor A [Lactobacillus ultunensis DSM 16047]
Length = 121
Score = 101 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 56/121 (46%), Gaps = 7/121 (5%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD--VS 67
R RV E+ L ++ N +D +S ++I+ V + DL ATVY SL +
Sbjct: 3 HRIGRVEGEILRELTKILQKN-IRDPRLSE--VTITAVECTNDLSYATVYYSLLTEDAEK 59
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALE 127
V L +R +G++L + VPEL F+ D S++ K++ L+ K E
Sbjct: 60 EKEVEEGLEKAKGMMRHLLGQTLTVYK-VPELIFKRDNSVKYGSKIDRLIAEVK-KQDAE 117
Query: 128 K 128
+
Sbjct: 118 R 118
>gi|323356818|ref|YP_004223214.1| ribosome-binding factor A [Microbacterium testaceum StLB037]
gi|323273189|dbj|BAJ73334.1| ribosome-binding factor A [Microbacterium testaceum StLB037]
Length = 163
Score = 101 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 26/109 (23%), Positives = 54/109 (49%), Gaps = 5/109 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP-D 69
R RV + +R L + +D + ++I++V ++ DL+ A+V+ ++ D + +
Sbjct: 5 RQARVADRIRVVLAERLEKG-LRDPRLG--FVTITDVRVTGDLQHASVFYTVMGDEAHRN 61
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+AL +R +G++L N R P L F D ++ ++AL+
Sbjct: 62 DTAAALKSATGMLRSEVGKNL-NTRLTPTLEFILDAIPENADHISALLR 109
>gi|329769649|ref|ZP_08261053.1| ribosome-binding factor A [Gemella sanguinis M325]
gi|328838404|gb|EGF88013.1| ribosome-binding factor A [Gemella sanguinis M325]
Length = 117
Score = 101 bits (254), Expect = 3e-20, Method: Composition-based stats.
Identities = 21/119 (17%), Positives = 58/119 (48%), Gaps = 7/119 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV-SPD 69
R R+ E+++ + +V+ + ++ + ++++EV ++ D A V+ ++ +
Sbjct: 5 RVNRLAEQIKKEITYVLA-TKVKNHDLG--FVTVTEVALTGDYSQAKVFYTVLGGEKEKE 61
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALEK 128
R + F++ + + ++ +R PEL F+YDT+ + + +L+ + E+
Sbjct: 62 RTKESFKKIKGFVKSEVAKKIK-IRKFPELIFQYDTTAEYALHIESLIAS--VSKKEEE 117
>gi|157376520|ref|YP_001475120.1| ribosome-binding factor A [Shewanella sediminis HAW-EB3]
gi|189039562|sp|A8FYR9|RBFA_SHESH RecName: Full=Ribosome-binding factor A
gi|157318894|gb|ABV37992.1| ribosome-binding factor A [Shewanella sediminis HAW-EB3]
Length = 143
Score = 101 bits (254), Expect = 3e-20, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 48/92 (52%), Gaps = 5/92 (5%)
Query: 30 NEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP--DRVISALNCNIKFIRGRIG 87
+ +D I +++++V +S DL A VY++ + + AL+ +IR +
Sbjct: 25 RDMKDPRIG--FVTVNDVDVSRDLSYAKVYVTFFEEDEKLVQEKVEALDAAAGYIRSLVA 82
Query: 88 RSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
++ LR +PELRF YD+SL +++ L+
Sbjct: 83 GRMK-LRVMPELRFIYDSSLVEGMRMSNLVSR 113
>gi|107022575|ref|YP_620902.1| ribosome-binding factor A [Burkholderia cenocepacia AU 1054]
gi|116689523|ref|YP_835146.1| ribosome-binding factor A [Burkholderia cenocepacia HI2424]
gi|170732827|ref|YP_001764774.1| ribosome-binding factor A [Burkholderia cenocepacia MC0-3]
gi|123245042|sp|Q1BWS6|RBFA_BURCA RecName: Full=Ribosome-binding factor A
gi|166218425|sp|A0K6X6|RBFA_BURCH RecName: Full=Ribosome-binding factor A
gi|238688626|sp|B1K0M1|RBFA_BURCC RecName: Full=Ribosome-binding factor A
gi|105892764|gb|ABF75929.1| ribosome-binding factor A [Burkholderia cenocepacia AU 1054]
gi|116647612|gb|ABK08253.1| ribosome-binding factor A [Burkholderia cenocepacia HI2424]
gi|169816069|gb|ACA90652.1| ribosome-binding factor A [Burkholderia cenocepacia MC0-3]
Length = 132
Score = 101 bits (254), Expect = 3e-20, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 57/117 (48%), Gaps = 6/117 (5%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
M K + R +++ ++++ L +I+ E +D I +++I V ++ D A VY
Sbjct: 1 MSRKRTSPN-RNVQIADQIQRDLSELIMR-EVKDPRIG--IVTIQSVELTPDYAHAKVYF 56
Query: 61 SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ P++ ALN + + + L ++ VP L F YD +++ +++ L+
Sbjct: 57 TALTG-DPEKTQEALNHASGHLHNLLFKRL-HIHTVPTLHFHYDQTIEKAVEMSRLI 111
>gi|296158773|ref|ZP_06841602.1| ribosome-binding factor A [Burkholderia sp. Ch1-1]
gi|295890978|gb|EFG70767.1| ribosome-binding factor A [Burkholderia sp. Ch1-1]
Length = 121
Score = 101 bits (254), Expect = 3e-20, Method: Composition-based stats.
Identities = 25/127 (19%), Positives = 58/127 (45%), Gaps = 7/127 (5%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
M K + R +++ ++++ L ++ E +D I +++I V ++ D A +Y
Sbjct: 1 MPKKRSSPN-RNVQIADQIQRDLSELL--REVKDPRIG--IVTIQSVELTPDYAHAKIYF 55
Query: 61 SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
+ P + + AL + ++ + L ++ VP L F YD +++ +++ L+
Sbjct: 56 TTLTG-DPQQTLEALTHAAGHLHNQLFKRL-HIHTVPTLHFHYDKTIERAVEMSRLIDEA 113
Query: 121 KIPVALE 127
A E
Sbjct: 114 NANRAKE 120
>gi|161723141|ref|YP_443080.2| ribosome-binding factor A [Burkholderia thailandensis E264]
gi|167582085|ref|ZP_02374959.1| ribosome-binding factor A [Burkholderia thailandensis TXDOH]
gi|167620246|ref|ZP_02388877.1| ribosome-binding factor A [Burkholderia thailandensis Bt4]
gi|257139310|ref|ZP_05587572.1| ribosome-binding factor A [Burkholderia thailandensis E264]
gi|172046091|sp|Q2SVG9|RBFA_BURTA RecName: Full=Ribosome-binding factor A
Length = 122
Score = 101 bits (254), Expect = 3e-20, Method: Composition-based stats.
Identities = 27/127 (21%), Positives = 57/127 (44%), Gaps = 6/127 (4%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
M K + R +++ ++++ L +I+ E +D I +++I V ++ D A VY
Sbjct: 1 MSKKRSSPN-RNVQIADQIQRDLSELIMR-EVKDPRIG--IVTIQSVELTPDYAHAKVYF 56
Query: 61 SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
+ +P ALN + + + L ++ VP L F YD +++ ++ L+
Sbjct: 57 TALTG-NPADTQEALNHAAGHLHNLLFKRL-HIHTVPTLHFHYDQTIEKAVAMSRLIDEA 114
Query: 121 KIPVALE 127
A +
Sbjct: 115 NATRAKD 121
>gi|291460968|ref|ZP_06026144.2| ribosome-binding factor A [Fusobacterium periodonticum ATCC 33693]
gi|291379766|gb|EFE87284.1| ribosome-binding factor A [Fusobacterium periodonticum ATCC 33693]
Length = 123
Score = 101 bits (254), Expect = 3e-20, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 65/119 (54%), Gaps = 10/119 (8%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL--PLDVS 67
+R +G+E+ + V+L E ++ I ++S++EV ++ DL+ A Y S+ PLD
Sbjct: 7 QRLEGIGKEMMRVISKVLL-EEVKNPKIKG-LVSVTEVNVTEDLKFADTYFSILPPLDNE 64
Query: 68 P-----DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+ ++ ALN F+R R+ + ++R+ PE+R + D S+++ K+ L+ K
Sbjct: 65 ENQYEHEEILEALNEIKGFLRKRVAEEV-DIRFTPEIRVKLDNSMENAMKITKLLNDLK 122
>gi|315641139|ref|ZP_07896218.1| ribosome-binding factor A [Enterococcus italicus DSM 15952]
gi|315483147|gb|EFU73664.1| ribosome-binding factor A [Enterococcus italicus DSM 15952]
Length = 115
Score = 101 bits (254), Expect = 3e-20, Method: Composition-based stats.
Identities = 29/111 (26%), Positives = 54/111 (48%), Gaps = 6/111 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD--VSP 68
R RV E+ + ++ + +D + ++I++V ++ DL+ AT+Y S+ D
Sbjct: 5 RDRRVAHEILREVNDIL-RKKVRDPRVQE--VTITDVHVTGDLQQATIYYSILSDLTSDR 61
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ L + IR +G+ L +L PEL F D S+Q K++ L+
Sbjct: 62 QKAQMGLEKSTGLIRRELGQGL-SLYKTPELIFELDQSVQYGNKIDELLRN 111
>gi|53719531|ref|YP_108517.1| ribosome-binding factor A [Burkholderia pseudomallei K96243]
gi|53724826|ref|YP_102759.1| ribosome-binding factor A [Burkholderia mallei ATCC 23344]
gi|162210047|ref|YP_333315.2| ribosome-binding factor A [Burkholderia pseudomallei 1710b]
gi|167719816|ref|ZP_02403052.1| ribosome-binding factor A [Burkholderia pseudomallei DM98]
gi|167738817|ref|ZP_02411591.1| ribosome-binding factor A [Burkholderia pseudomallei 14]
gi|167816039|ref|ZP_02447719.1| ribosome-binding factor A [Burkholderia pseudomallei 91]
gi|167845946|ref|ZP_02471454.1| ribosome-binding factor A [Burkholderia pseudomallei B7210]
gi|167894523|ref|ZP_02481925.1| ribosome-binding factor A [Burkholderia pseudomallei 7894]
gi|167902928|ref|ZP_02490133.1| ribosome-binding factor A [Burkholderia pseudomallei NCTC 13177]
gi|167919188|ref|ZP_02506279.1| ribosome-binding factor A [Burkholderia pseudomallei BCC215]
gi|254199708|ref|ZP_04906074.1| ribosome-binding factor A [Burkholderia mallei FMH]
gi|254358403|ref|ZP_04974676.1| ribosome-binding factor A [Burkholderia mallei 2002721280]
gi|61214833|sp|Q62KL0|RBFA_BURMA RecName: Full=Ribosome-binding factor A
gi|61214850|sp|Q63TP9|RBFA_BURPS RecName: Full=Ribosome-binding factor A
gi|171769479|sp|A1V3N3|RBFA_BURMS RecName: Full=Ribosome-binding factor A
gi|171769872|sp|A2S2L0|RBFA_BURM9 RecName: Full=Ribosome-binding factor A
gi|171855124|sp|A3NUL1|RBFA_BURP0 RecName: Full=Ribosome-binding factor A
gi|171855126|sp|A3N8V9|RBFA_BURP6 RecName: Full=Ribosome-binding factor A
gi|171855141|sp|A3MJW5|RBFA_BURM7 RecName: Full=Ribosome-binding factor A
gi|172046646|sp|Q3JSY8|RBFA_BURP1 RecName: Full=Ribosome-binding factor A
gi|52209945|emb|CAH35917.1| putative ribosome-binding factor [Burkholderia pseudomallei K96243]
gi|52428249|gb|AAU48842.1| ribosome-binding factor A [Burkholderia mallei ATCC 23344]
gi|147749304|gb|EDK56378.1| ribosome-binding factor A [Burkholderia mallei FMH]
gi|148027530|gb|EDK85551.1| ribosome-binding factor A [Burkholderia mallei 2002721280]
Length = 122
Score = 101 bits (254), Expect = 3e-20, Method: Composition-based stats.
Identities = 27/127 (21%), Positives = 57/127 (44%), Gaps = 6/127 (4%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
M K + R +++ ++++ L +I+ E +D I +++I V ++ D A VY
Sbjct: 1 MSKKRSSPN-RNVQIADQIQRDLSELIMR-EVKDPRIG--IVTIQSVELTPDYAHAKVYF 56
Query: 61 SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
+ +P ALN + + + L ++ VP L F YD +++ ++ L+
Sbjct: 57 TALTG-TPADTQEALNHAAGHLHNLLFKRL-HIHTVPTLHFHYDQTIEKAVAMSRLIDEA 114
Query: 121 KIPVALE 127
A +
Sbjct: 115 NATRAKD 121
>gi|291543561|emb|CBL16670.1| ribosome-binding factor A [Ruminococcus sp. 18P13]
Length = 131
Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats.
Identities = 28/114 (24%), Positives = 54/114 (47%), Gaps = 5/114 (4%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS- 67
S ++ R+ E+V+ L ++ E +D I + ++SI V +S DL VY+S ++
Sbjct: 21 SYKSDRLAEDVKRELTAIL--RELKDPRIGQ-MLSIVRVDLSNDLSHCKVYVSSFEGLAV 77
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+ + L FIR + L+ +R P + F D S+ ++N + +
Sbjct: 78 AQQSVEGLRSAEGFIRRELFHRLK-MRKAPAMHFVADDSIAHAAEINQKLRDLE 130
>gi|315038571|ref|YP_004032139.1| ribosome-binding factor A [Lactobacillus amylovorus GRL 1112]
gi|325957045|ref|YP_004292457.1| ribosome-binding factor A [Lactobacillus acidophilus 30SC]
gi|312276704|gb|ADQ59344.1| ribosome-binding factor A [Lactobacillus amylovorus GRL 1112]
gi|325333610|gb|ADZ07518.1| ribosome-binding factor A [Lactobacillus acidophilus 30SC]
gi|327183768|gb|AEA32215.1| ribosome-binding factor A [Lactobacillus amylovorus GRL 1118]
Length = 121
Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 56/121 (46%), Gaps = 7/121 (5%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD--VS 67
R RV E+ L ++ + +D +S ++I+ V + DL ATVY SL +
Sbjct: 3 HRIGRVEGEILRELTKIL-QKKIRDPRLSE--VTITAVECTNDLSYATVYYSLLTEDAEK 59
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALE 127
V L +R +G++L + VPEL F+ D S++ K++ L+ K E
Sbjct: 60 EKEVEEGLEKAKGMMRHLLGQTLTVYK-VPELIFKRDNSVKYGSKIDRLIAEVK-KQDAE 117
Query: 128 K 128
+
Sbjct: 118 R 118
>gi|322373940|ref|ZP_08048475.1| ribosome-binding factor A [Streptococcus sp. C150]
gi|321277312|gb|EFX54382.1| ribosome-binding factor A [Streptococcus sp. C150]
Length = 117
Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats.
Identities = 25/116 (21%), Positives = 57/116 (49%), Gaps = 6/116 (5%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD-- 65
NS R RVG E++ + ++ + +D + ++I++V M DL A V+ ++ +
Sbjct: 3 NSFRIDRVGMEIKREVNEIL-QKKVRDPRVQD--VTITDVQMLGDLSAAKVFYTIHSNLA 59
Query: 66 VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+ + L I+ +G++L + +P+L F D S++ K++ ++ +
Sbjct: 60 SDSQKAQTGLEKATGTIKRELGKNL-TMYKIPDLTFIKDESIEYGNKIDEMLRNLE 114
>gi|237743257|ref|ZP_04573738.1| ribosome-binding factor A [Fusobacterium sp. 7_1]
gi|256028612|ref|ZP_05442446.1| ribosome-binding factor A [Fusobacterium sp. D11]
gi|260495120|ref|ZP_05815249.1| ribosome-binding factor A [Fusobacterium sp. 3_1_33]
gi|289766530|ref|ZP_06525908.1| ribosome-binding factor A [Fusobacterium sp. D11]
gi|229433036|gb|EEO43248.1| ribosome-binding factor A [Fusobacterium sp. 7_1]
gi|260197563|gb|EEW95081.1| ribosome-binding factor A [Fusobacterium sp. 3_1_33]
gi|289718085|gb|EFD82097.1| ribosome-binding factor A [Fusobacterium sp. D11]
Length = 120
Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 63/120 (52%), Gaps = 10/120 (8%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL----- 64
+R +G+E+ + V+L E ++ I ++S++EV ++ DL+ A Y S+
Sbjct: 4 QRLEGIGKEIMRVISKVLL-EEVKNPKIKG-LVSVTEVDVTEDLKFADTYFSILPPLNSD 61
Query: 65 --DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
+ ++ ALN F+R R+ + ++RY PE+R + D S+++ K+ L+ K+
Sbjct: 62 EKQYDNEEILEALNEIKGFLRKRVAEEV-DIRYTPEIRVKLDNSMENAIKITKLLNDLKV 120
>gi|302039402|ref|YP_003799724.1| ribosome-binding factor A [Candidatus Nitrospira defluvii]
gi|300607466|emb|CBK43799.1| Ribosome-binding factor A [Candidatus Nitrospira defluvii]
Length = 132
Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats.
Identities = 30/114 (26%), Positives = 58/114 (50%), Gaps = 5/114 (4%)
Query: 5 NPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL 64
RA RV +++R + +++ + +D + +++++V ++ DLR+A V+++
Sbjct: 2 TKSTYSRADRVADQIRMEVADILMR-KIKDPRV--RSVTVTDVELTKDLRIARVFVTTME 58
Query: 65 DVSPDR-VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+R V L F+R +GR L LRY+PEL F D S ++ L+
Sbjct: 59 QNKDERLVFDGLAKASGFVRAELGRRL-ALRYLPELIFMKDISGPRADRVLELL 111
>gi|150024347|ref|YP_001295173.1| ribosome-binding factor A [Flavobacterium psychrophilum JIP02/86]
gi|172048600|sp|A6GW80|RBFA_FLAPJ RecName: Full=Ribosome-binding factor A
gi|149770888|emb|CAL42353.1| Ribosome-binding factor A [Flavobacterium psychrophilum JIP02/86]
Length = 130
Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 61/120 (50%), Gaps = 2/120 (1%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
+ R ++G ++ L+ ++ E + IS VIS+S+V ++ DL VA VY+S+
Sbjct: 1 METNRQKKIGGVIQKDLVDIL-QGEIRKNGISNLVISVSKVSVTTDLGVARVYLSVFPQE 59
Query: 67 SPDRVISALNCNIKFIRGRIGRSLR-NLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
++ ++ N+ I+ + + +R LR VP L F D SL K++ + + P+
Sbjct: 60 KAPEILESIKSNMYLIKHDLSQRVRLQLRKVPNLAFYIDDSLDYIEKIDNALAGKENPIE 119
>gi|228476615|ref|ZP_04061297.1| ribosome-binding factor A [Streptococcus salivarius SK126]
gi|228251810|gb|EEK10875.1| ribosome-binding factor A [Streptococcus salivarius SK126]
Length = 117
Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats.
Identities = 25/117 (21%), Positives = 56/117 (47%), Gaps = 6/117 (5%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP--L 64
NS R RVG E++ + ++ + +D + ++I++V M DL A ++ ++ L
Sbjct: 2 GNSFRVDRVGMEIKREVNEIL-QKKVRDPRVQD--VTITDVQMLGDLSAAKIFYTIHSTL 58
Query: 65 DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+ + L I+ +G+ L + +P+L F D S++ K++ ++ +
Sbjct: 59 ASDNQKAQTGLEKATGTIKRELGKKL-TMYKIPDLTFIKDESIEYGNKIDEMLRNLE 114
>gi|167562937|ref|ZP_02355853.1| ribosome-binding factor A [Burkholderia oklahomensis EO147]
gi|167570127|ref|ZP_02363001.1| ribosome-binding factor A [Burkholderia oklahomensis C6786]
Length = 122
Score = 101 bits (253), Expect = 4e-20, Method: Composition-based stats.
Identities = 27/127 (21%), Positives = 57/127 (44%), Gaps = 6/127 (4%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
M K + R +++ ++++ L +I+ E +D I +++I V ++ D A VY
Sbjct: 1 MSKKRSSPN-RNVQIADQIQRDLSELIMR-EVKDPRIG--IVTIQSVELTPDYAHAKVYF 56
Query: 61 SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
+ +P ALN + + + L ++ VP L F YD +++ ++ L+
Sbjct: 57 TALTG-NPADTQDALNHAAGHLHNLLFKRL-HIHTVPTLHFHYDQTIEKAVAMSRLIDEA 114
Query: 121 KIPVALE 127
A +
Sbjct: 115 NATRAKD 121
>gi|294085146|ref|YP_003551906.1| ribosome-binding factor A [Candidatus Puniceispirillum marinum
IMCC1322]
gi|292664721|gb|ADE39822.1| ribosome-binding factor A [Candidatus Puniceispirillum marinum
IMCC1322]
Length = 129
Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats.
Identities = 37/112 (33%), Positives = 59/112 (52%), Gaps = 1/112 (0%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
S+R LRVGE +R AL ++ +F D + I+ISE+ +S DL A VY V
Sbjct: 13 GPSQRQLRVGETLRHALSDILFREDFFDPDLENVSITISEISISPDLSNARVYTMPLGGV 72
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ + V+ ALN I+ + + + +LR P L+F D S ++ ++N L
Sbjct: 73 NVEVVLPALNRLAPKIQSMVAQRV-HLRRAPRLKFLLDESFENAARMNVLFN 123
>gi|15902526|ref|NP_358076.1| ribosome-binding factor A [Streptococcus pneumoniae R6]
gi|15458052|gb|AAK99286.1| Ribosome binding factor A [Streptococcus pneumoniae R6]
Length = 125
Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats.
Identities = 27/111 (24%), Positives = 55/111 (49%), Gaps = 6/111 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD--VSP 68
R RVG E++ + ++ + +D + ++I++V M DL VA VY ++ +
Sbjct: 15 RIDRVGMEIKREVNEIL-QKKVRDPRVQG--VTITDVQMLGDLSVAKVYYTILSNLASDN 71
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ L I+ +GR+L+ L +P+L F D S++ K++ ++
Sbjct: 72 QKAQIGLEKATGTIKRELGRNLK-LYKIPDLTFVKDESIEYGNKIDEMLRN 121
>gi|120437657|ref|YP_863343.1| ribosome-binding factor A [Gramella forsetii KT0803]
gi|171460864|sp|A0M6N1|RBFA_GRAFK RecName: Full=Ribosome-binding factor A
gi|117579807|emb|CAL68276.1| ribosome-binding factor A [Gramella forsetii KT0803]
Length = 131
Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 61/120 (50%), Gaps = 2/120 (1%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
+ + R ++G ++ L ++ N ++ + +IS+S+V ++ DL +A Y+S+
Sbjct: 2 EETNRQKKIGGLLQKDLADIL-QNSLRESGRTGILISVSKVRVTTDLSIAKAYVSIFPSK 60
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRN-LRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
+ VI +N N I+ + + R+ LR +P+L F D SL+ + + + PVA
Sbjct: 61 HQEEVIKEINENKSQIKHEMAQRTRHQLRKMPDLSFYVDDSLEYIDGIEKSIKGKEDPVA 120
>gi|317153851|ref|YP_004121899.1| ribosome-binding factor A [Desulfovibrio aespoeensis Aspo-2]
gi|316944102|gb|ADU63153.1| ribosome-binding factor A [Desulfovibrio aespoeensis Aspo-2]
Length = 113
Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats.
Identities = 30/105 (28%), Positives = 60/105 (57%), Gaps = 5/105 (4%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
+SRRA+R+G+++ + +++ E QD + ++++S V M+ +LR+A ++ ++ D
Sbjct: 3 ASSSRRAVRMGDQIMREVATLLV-EEVQDPRL--QLVTLSGVRMNANLRIAEMFYTVSGD 59
Query: 66 -VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQS 109
V L F+R +G+ L+ L++ PELRF +D L+
Sbjct: 60 IEHRREVQQGLEKATGFLRSNLGKRLK-LQFTPELRFTFDDFLED 103
>gi|19705315|ref|NP_602810.1| ribosome-binding factor A [Fusobacterium nucleatum subsp. nucleatum
ATCC 25586]
gi|296328563|ref|ZP_06871082.1| ribosome-binding factor A [Fusobacterium nucleatum subsp. nucleatum
ATCC 23726]
gi|22096032|sp|Q8RHJ7|RBFA_FUSNN RecName: Full=Ribosome-binding factor A
gi|19713286|gb|AAL94109.1| Ribosome-binding factor A [Fusobacterium nucleatum subsp. nucleatum
ATCC 25586]
gi|296154372|gb|EFG95171.1| ribosome-binding factor A [Fusobacterium nucleatum subsp. nucleatum
ATCC 23726]
Length = 120
Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 64/120 (53%), Gaps = 10/120 (8%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL----D 65
+R +G+E+ + V+L E ++ I ++S++EV ++ DL+ A Y S+ D
Sbjct: 4 QRLEGIGKEIMRVISKVLL-EEVKNPKIKG-LVSVTEVDVTEDLKFADTYFSILPPLKSD 61
Query: 66 VSP---DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
+ ++ ALN F+R R+ + ++RY PE+R + D S+++ K+ L+ K+
Sbjct: 62 EKKYDHEEILEALNEIKGFLRKRVAEEV-DIRYTPEIRVKLDNSMENAIKITKLLNDLKV 120
>gi|194246710|ref|YP_002004349.1| Ribosome-binding factor A [Candidatus Phytoplasma mali]
gi|259552045|sp|B3QZW6|RBFA_PHYMT RecName: Full=Ribosome-binding factor A
gi|193807067|emb|CAP18503.1| Ribosome-binding factor A [Candidatus Phytoplasma mali]
Length = 114
Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats.
Identities = 28/107 (26%), Positives = 56/107 (52%), Gaps = 5/107 (4%)
Query: 13 LRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVI 72
++ ++ L +I+N ++ I I+++EV ++ DL A VY + + +
Sbjct: 6 EKLASLIKKELA-LIINVSIRNNKIG--FINVTEVKLTNDLSFANVYYVILNNQPEFLSL 62
Query: 73 SA--LNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+A + N IR + + +RN+R +PEL F YDTSL+ ++ ++
Sbjct: 63 AAEIIEKNKSTIRMLLAKKIRNIRKIPELVFIYDTSLEYGNHIDNIL 109
>gi|297180390|gb|ADI16607.1| ribosome-binding factor a [uncultured gamma proteobacterium
HF0010_01E20]
Length = 135
Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 55/122 (45%), Gaps = 7/122 (5%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS-- 67
R LRV + VR + ++ + +D + +S+++V +S DL A +Y+S
Sbjct: 2 SRDLRVADFVRDEVSRILQR-DIRDPRVGA-FVSVNDVRVSKDLFYAEIYVSSLQANDAK 59
Query: 68 -PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVAL 126
++ LN F R + + N+R P+ RF YD ++ +L L+ +
Sbjct: 60 AKAELVDVLNRAAGFFRTELSKR-HNMRVTPKPRFHYDELVERGPRLEQLIEQ-AVTQDQ 117
Query: 127 EK 128
++
Sbjct: 118 QR 119
>gi|78066112|ref|YP_368881.1| ribosome-binding factor A [Burkholderia sp. 383]
gi|123568679|sp|Q39H29|RBFA_BURS3 RecName: Full=Ribosome-binding factor A
gi|77966857|gb|ABB08237.1| ribosome-binding factor A [Burkholderia sp. 383]
Length = 132
Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 56/117 (47%), Gaps = 6/117 (5%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
M K + R +++ ++++ L +I+ E +D I +++I V ++ D A VY
Sbjct: 1 MSRKRTSPN-RNVQIADQIQRDLSELIMR-EVKDPRIG--IVTIQSVELTPDYAHAKVYF 56
Query: 61 SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ P + ALN + + + L ++ VP L F YD +++ +++ L+
Sbjct: 57 TALTG-DPAKTQEALNHASGHLHNLLFKRL-HIHTVPTLHFHYDQTIEKAVEMSRLI 111
>gi|46446394|ref|YP_007759.1| putative ribosome binding factor A [Candidatus Protochlamydia
amoebophila UWE25]
gi|61215033|sp|Q6MD65|RBFA_PARUW RecName: Full=Ribosome-binding factor A
gi|46400035|emb|CAF23484.1| putative ribosome binding factor A [Candidatus Protochlamydia
amoebophila UWE25]
Length = 131
Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats.
Identities = 28/109 (25%), Positives = 55/109 (50%), Gaps = 4/109 (3%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPD 69
+R R+ ++ + VI + ++ + ++++++ V +S DLR A V+IS+
Sbjct: 4 QRTDRLNSLLKEVISEVI-RRDVRNPYV-TELVTVTRVQISRDLRYAKVFISIIGSEQAK 61
Query: 70 -RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
I ALN FI + + +RY PEL F+ D S+ + ++ L+
Sbjct: 62 VETIEALNSAAGFIAVNASQKV-VMRYFPELNFKLDDSVDKHMRIEELL 109
>gi|29427588|sp|P59411|RBFA_BUCBP RecName: Full=Ribosome-binding factor A
Length = 119
Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats.
Identities = 27/111 (24%), Positives = 56/111 (50%), Gaps = 4/111 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP-- 68
R+ ++ E++ + W+I D + +IS+S V +S D A +Y+S+ + +
Sbjct: 6 RSFKISNEIKKKISWIICYQ-LCDPRLFNILISVSSVNLSRDFSYAKIYVSILNNKNISF 64
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+++ L + K IR + + + LR +P L F +D+S + K+ L+
Sbjct: 65 KEILTILQNSSKHIRYLLAKGI-FLRIIPTLHFCHDSSYVNGTKITNLINN 114
>gi|297621092|ref|YP_003709229.1| Ribosome-binding factor A [Waddlia chondrophila WSU 86-1044]
gi|297376393|gb|ADI38223.1| Ribosome-binding factor A [Waddlia chondrophila WSU 86-1044]
Length = 130
Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 51/117 (43%), Gaps = 4/117 (3%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS-P 68
+R R+ ++ + VI + + + +S++ V +S DLR A VYIS+ D
Sbjct: 4 QRIDRLNSLLKEVISEVI-RKDVDNPEVGE-FVSVTRVDISKDLRHAKVYISIIGDEDTK 61
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
+ + AL FI + + +R+ P LRF D ++ ++ L+
Sbjct: 62 QKTLKALTTASGFIGINASKKV-VMRFFPALRFIIDDTVDKVMRIEELLQEIHEEQD 117
>gi|320528337|ref|ZP_08029499.1| ribosome-binding factor A [Solobacterium moorei F0204]
gi|320131251|gb|EFW23819.1| ribosome-binding factor A [Solobacterium moorei F0204]
Length = 120
Score = 100 bits (251), Expect = 5e-20, Method: Composition-based stats.
Identities = 24/114 (21%), Positives = 51/114 (44%), Gaps = 5/114 (4%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-DVS 67
S + R+ +R + +I +D + ++I++V +S D A V+++ +
Sbjct: 3 SVKQKRLEGIIRKNISEIIQFG-VKDPDVG--FVTITDVQVSNDHSYAKVFVTFLGQNPR 59
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+ ALN FIR + + + +R VPEL F D + + ++ ++
Sbjct: 60 MQAGLRALNRAAGFIRSELSKRM-TIRRVPELSFVIDETEMNGRHIDEIIARIH 112
>gi|323697465|ref|ZP_08109377.1| ribosome-binding factor A [Desulfovibrio sp. ND132]
gi|323457397|gb|EGB13262.1| ribosome-binding factor A [Desulfovibrio desulfuricans ND132]
Length = 113
Score = 100 bits (251), Expect = 5e-20, Method: Composition-based stats.
Identities = 32/105 (30%), Positives = 61/105 (58%), Gaps = 5/105 (4%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
SRRA+R+G+++ + +++ E D ++ ++++S V M+ +LR+A ++ ++ D
Sbjct: 3 ASTSRRAVRMGDQIMREIGTLLV-EEAADPRLN--LVTLSGVRMNSNLRIAEIFYTVSGD 59
Query: 66 -VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQS 109
V L F+R R+GR L+ L+Y PELRF++D L+
Sbjct: 60 AEHRREVQEGLEKATGFLRSRLGRILK-LQYTPELRFQFDEFLED 103
>gi|209520197|ref|ZP_03268968.1| ribosome-binding factor A [Burkholderia sp. H160]
gi|295676262|ref|YP_003604786.1| ribosome-binding factor A [Burkholderia sp. CCGE1002]
gi|209499356|gb|EDZ99440.1| ribosome-binding factor A [Burkholderia sp. H160]
gi|295436105|gb|ADG15275.1| ribosome-binding factor A [Burkholderia sp. CCGE1002]
Length = 121
Score = 100 bits (251), Expect = 5e-20, Method: Composition-based stats.
Identities = 24/117 (20%), Positives = 55/117 (47%), Gaps = 7/117 (5%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
M K + R +++ ++++ L ++ E +D I +++ V ++ D A VY
Sbjct: 1 MPKKRTTPN-RNVQIADQIQRDLAELL--REVKDPRIG--IVTFQSVELTPDYAHAKVYF 55
Query: 61 SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ P + + AL +R + + L ++ VP L F YD +++ +++ L+
Sbjct: 56 TTLTG-DPQQTLEALTHAAGHLRNLLFKRL-HIHTVPTLHFHYDKTIERAVEMSRLI 110
>gi|58337533|ref|YP_194118.1| ribosome-binding factor A [Lactobacillus acidophilus NCFM]
gi|227904174|ref|ZP_04021979.1| ribosome binding factor A [Lactobacillus acidophilus ATCC 4796]
gi|62510965|sp|Q5FJN7|RBFA_LACAC RecName: Full=Ribosome-binding factor A
gi|58254850|gb|AAV43087.1| ribosome binding factor A [Lactobacillus acidophilus NCFM]
gi|227868193|gb|EEJ75614.1| ribosome binding factor A [Lactobacillus acidophilus ATCC 4796]
Length = 121
Score = 100 bits (251), Expect = 5e-20, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 57/121 (47%), Gaps = 7/121 (5%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD--VS 67
R RV E+ L ++ + +D +S ++I+ V + DL AT+Y SL +
Sbjct: 3 HRVGRVEGEILRELTKIL-RKDIRDPRLSE--VTITAVECTNDLSYATIYYSLLTEDAEK 59
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALE 127
V L+ +R +G++L + VPEL F+ D S++ K++ L+ K E
Sbjct: 60 EKEVQEGLDKAKGMMRHLLGQTLTVYK-VPELIFKRDNSVKYGSKIDRLIAEVK-KQDAE 117
Query: 128 K 128
+
Sbjct: 118 R 118
>gi|217423463|ref|ZP_03454964.1| ribosome-binding factor A [Burkholderia pseudomallei 576]
gi|217393321|gb|EEC33342.1| ribosome-binding factor A [Burkholderia pseudomallei 576]
Length = 138
Score = 100 bits (251), Expect = 5e-20, Method: Composition-based stats.
Identities = 27/127 (21%), Positives = 57/127 (44%), Gaps = 6/127 (4%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
M K + R +++ ++++ L +I+ E +D I +++I V ++ D A VY
Sbjct: 17 MSKKRSSPN-RNVQIADQIQRDLSELIMR-EAKDPRIG--IVTIQSVELTPDYAHAKVYF 72
Query: 61 SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
+ +P ALN + + + L ++ VP L F YD +++ ++ L+
Sbjct: 73 TALTG-TPADTQEALNHAAGHLHNLLFKRL-HIHTVPTLHFHYDQAIEKAVAMSRLIDEA 130
Query: 121 KIPVALE 127
A +
Sbjct: 131 NATRAKD 137
>gi|238027583|ref|YP_002911814.1| ribosome-binding factor A [Burkholderia glumae BGR1]
gi|237876777|gb|ACR29110.1| Ribosome-binding factor A [Burkholderia glumae BGR1]
Length = 122
Score = 100 bits (251), Expect = 5e-20, Method: Composition-based stats.
Identities = 27/127 (21%), Positives = 58/127 (45%), Gaps = 6/127 (4%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
M K + R +++ ++++ L +I+ E +D I +++I V ++ D A VY
Sbjct: 1 MTKKRSSPN-RNVQIADQIQRDLSELIMR-EVKDPRIG--IVTIQSVELTPDYAHAKVYF 56
Query: 61 SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
+ P + ALN + + + L ++ VP L F YD +++ +++ L+
Sbjct: 57 TALTG-DPVQTQEALNHASGHLHNLLFKRL-HIHTVPTLHFHYDKTIEKAVEMSRLIEQA 114
Query: 121 KIPVALE 127
A +
Sbjct: 115 NSTRAKD 121
>gi|126175438|ref|YP_001051587.1| ribosome-binding factor A [Shewanella baltica OS155]
gi|153001788|ref|YP_001367469.1| ribosome-binding factor A [Shewanella baltica OS185]
gi|217972316|ref|YP_002357067.1| ribosome-binding factor A [Shewanella baltica OS223]
gi|125998643|gb|ABN62718.1| ribosome-binding factor A [Shewanella baltica OS155]
gi|151366406|gb|ABS09406.1| ribosome-binding factor A [Shewanella baltica OS185]
gi|217497451|gb|ACK45644.1| ribosome-binding factor A [Shewanella baltica OS223]
Length = 157
Score = 100 bits (251), Expect = 5e-20, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 62/121 (51%), Gaps = 6/121 (4%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
++N K R R+ ++++ L V+ + +D I +++++V +S DL A V++
Sbjct: 2 VRNIMAKEFSRTRRIAQQLQQELAQVLQR-DMKDPRIG--FVTVNDVDVSRDLSYAKVFV 58
Query: 61 SLPLDVSP--DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ + ++AL +IR + ++ LR +PELRF YD+SL +++ L+
Sbjct: 59 TFFEEDKAVVQEKLNALISAAPYIRTLVAGRMK-LRVMPELRFIYDSSLVEGMRMSNLVS 117
Query: 119 L 119
Sbjct: 118 Q 118
>gi|160876522|ref|YP_001555838.1| ribosome-binding factor A [Shewanella baltica OS195]
gi|160862044|gb|ABX50578.1| ribosome-binding factor A [Shewanella baltica OS195]
Length = 157
Score = 100 bits (251), Expect = 6e-20, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 62/121 (51%), Gaps = 6/121 (4%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
++N K R R+ ++++ L V+ + +D I +++++V +S DL A V++
Sbjct: 2 VRNIMAKEFSRTRRIAQQLQQELAQVLQR-DMKDPRIG--FVTVNDVDVSRDLSYAKVFV 58
Query: 61 SLPLDVSP--DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ + ++AL +IR + ++ LR +PELRF YD+SL +++ L+
Sbjct: 59 TFFEEDKAVVQEKLNALISAAPYIRTLVAGRMK-LRVMPELRFIYDSSLVEGMRMSNLVS 117
Query: 119 L 119
Sbjct: 118 Q 118
>gi|115351436|ref|YP_773275.1| ribosome-binding factor A [Burkholderia ambifaria AMMD]
gi|170700021|ref|ZP_02891046.1| ribosome-binding factor A [Burkholderia ambifaria IOP40-10]
gi|171317093|ref|ZP_02906296.1| ribosome-binding factor A [Burkholderia ambifaria MEX-5]
gi|172060475|ref|YP_001808127.1| ribosome-binding factor A [Burkholderia ambifaria MC40-6]
gi|122323371|sp|Q0BFY2|RBFA_BURCM RecName: Full=Ribosome-binding factor A
gi|238689140|sp|B1YP37|RBFA_BURA4 RecName: Full=Ribosome-binding factor A
gi|115281424|gb|ABI86941.1| ribosome-binding factor A [Burkholderia ambifaria AMMD]
gi|170135080|gb|EDT03383.1| ribosome-binding factor A [Burkholderia ambifaria IOP40-10]
gi|171097727|gb|EDT42554.1| ribosome-binding factor A [Burkholderia ambifaria MEX-5]
gi|171992992|gb|ACB63911.1| ribosome-binding factor A [Burkholderia ambifaria MC40-6]
Length = 132
Score = 100 bits (251), Expect = 6e-20, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 57/117 (48%), Gaps = 6/117 (5%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
M K + R +++ ++++ L +I+ E +D I +++I V ++ D A +Y
Sbjct: 1 MSRKRTSPN-RNVQIADQIQRDLSELIMR-EVKDPRIG--IVTIQSVELTPDYAHAKIYF 56
Query: 61 SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ PD+ ALN + + + L ++ VP L F YD +++ +++ L+
Sbjct: 57 TALTG-DPDKTQEALNHASGHLHNLLFKRL-HIHTVPTLHFHYDQTIEKAVEMSRLI 111
>gi|330816695|ref|YP_004360400.1| Ribosome-binding factor A [Burkholderia gladioli BSR3]
gi|327369088|gb|AEA60444.1| Ribosome-binding factor A [Burkholderia gladioli BSR3]
Length = 122
Score = 100 bits (251), Expect = 6e-20, Method: Composition-based stats.
Identities = 27/127 (21%), Positives = 58/127 (45%), Gaps = 6/127 (4%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
M K + R +++ ++++ L +I+ E +D I +++I V ++ D A VY
Sbjct: 1 MTKKRTSPN-RNVQIADQIQRDLSELIMR-EVKDPRIG--IVTIQSVELTPDYAHAKVYF 56
Query: 61 SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
+ P + ALN + + + L ++ VP L F YD +++ +++ L+
Sbjct: 57 TALTG-DPLQTQDALNHAAGHLHNLLFKRL-HIHTVPTLHFHYDQTIEKAVEMSRLIEQA 114
Query: 121 KIPVALE 127
A +
Sbjct: 115 NSTRAKD 121
>gi|218258188|ref|ZP_03474590.1| hypothetical protein PRABACTJOHN_00244 [Parabacteroides johnsonii
DSM 18315]
gi|218225683|gb|EEC98333.1| hypothetical protein PRABACTJOHN_00244 [Parabacteroides johnsonii
DSM 18315]
Length = 111
Score = 100 bits (251), Expect = 6e-20, Method: Composition-based stats.
Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 4/112 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
S R ++ ++ L + Q + + +IS+S V +S DL VA Y+S+
Sbjct: 1 MESTRLSKIERLLQKELSDIFQK---QTQAMHGILISVSVVRVSPDLSVARAYLSIFPSE 57
Query: 67 SPDRVISALNCNIKFIRGRIGRSLR-NLRYVPELRFRYDTSLQSYWKLNALM 117
++ + N K IR +G+ +R +R +PEL F D SL ++ L+
Sbjct: 58 KSKEMLENIRANTKAIRFDLGQRIRQQVRKIPELTFFIDDSLDYIENIDNLL 109
>gi|221197758|ref|ZP_03570804.1| ribosome-binding factor A [Burkholderia multivorans CGD2M]
gi|221204684|ref|ZP_03577701.1| ribosome-binding factor A [Burkholderia multivorans CGD2]
gi|221175541|gb|EEE07971.1| ribosome-binding factor A [Burkholderia multivorans CGD2]
gi|221181690|gb|EEE14091.1| ribosome-binding factor A [Burkholderia multivorans CGD2M]
Length = 161
Score = 100 bits (250), Expect = 7e-20, Method: Composition-based stats.
Identities = 26/127 (20%), Positives = 56/127 (44%), Gaps = 6/127 (4%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
M K + R +++ ++++ L +I+ E +D I +++I V ++ D A +Y
Sbjct: 30 MSRKRTSPN-RNVQIADQIQRDLSELIMR-EVKDPRIG--IVTIQSVELTPDYAHAKIYF 85
Query: 61 SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
+ P ALN + + + L ++ VP L F YD +++ ++ L+
Sbjct: 86 TTLTG-DPAATQQALNHASGHLHNLLFKRL-HIHTVPTLHFHYDQTIEKAVAMSRLIDEA 143
Query: 121 KIPVALE 127
A +
Sbjct: 144 NATRAKD 150
>gi|294783783|ref|ZP_06749107.1| ribosome-binding factor A [Fusobacterium sp. 1_1_41FAA]
gi|294480661|gb|EFG28438.1| ribosome-binding factor A [Fusobacterium sp. 1_1_41FAA]
Length = 120
Score = 100 bits (250), Expect = 7e-20, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 63/119 (52%), Gaps = 10/119 (8%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL---DV 66
+R +G+E+ + V+L E ++ I ++S++EV ++ DL+ A Y S+ D
Sbjct: 4 QRLEGIGKEMMRVISKVLL-EEVKNPKIKG-LVSVTEVNVTEDLKFADTYFSILPPLNDE 61
Query: 67 SP----DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+ ++ ALN F+R R+ + ++R+ PE+R + D S+++ K+ L+ K
Sbjct: 62 EKQYDHEEILEALNEIKGFLRKRVAEEV-DIRFTPEIRVKLDNSMENAMKITKLLNDLK 119
>gi|188577679|ref|YP_001914608.1| ribosome-binding factor A [Xanthomonas oryzae pv. oryzae PXO99A]
gi|188522131|gb|ACD60076.1| ribosome-binding factor A [Xanthomonas oryzae pv. oryzae PXO99A]
Length = 115
Score = 100 bits (250), Expect = 7e-20, Method: Composition-based stats.
Identities = 25/101 (24%), Positives = 50/101 (49%), Gaps = 4/101 (3%)
Query: 19 VRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCN 78
+R L ++ +D + +S+S+V +S DL A V+++ + L
Sbjct: 1 MRRDLGTIVH-AAVRDHGLPS--VSVSDVEISRDLAHAKVFVTALQQERSAEAVKGLKDI 57
Query: 79 IKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+R ++ R+++ LR+VPEL F YD S+ +++ L+
Sbjct: 58 AGQLRTQLARAMK-LRHVPELHFHYDDSVDRGERIDNLLRD 97
>gi|120597901|ref|YP_962475.1| ribosome-binding factor A [Shewanella sp. W3-18-1]
gi|146293927|ref|YP_001184351.1| ribosome-binding factor A [Shewanella putrefaciens CN-32]
gi|166219405|sp|A4Y9B9|RBFA_SHEPC RecName: Full=Ribosome-binding factor A
gi|166219407|sp|A1RGX6|RBFA_SHESW RecName: Full=Ribosome-binding factor A
gi|120557994|gb|ABM23921.1| ribosome-binding factor A [Shewanella sp. W3-18-1]
gi|145565617|gb|ABP76552.1| ribosome-binding factor A [Shewanella putrefaciens CN-32]
Length = 149
Score = 100 bits (250), Expect = 7e-20, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 59/116 (50%), Gaps = 6/116 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K R R+ ++++ L V+ + +D I +++++V +S DL A V+++ +
Sbjct: 2 AKEFSRTRRIAQQLQQELAQVLQR-DMKDPRIG--FVTVNDVDVSRDLSYAKVFVTFFEE 58
Query: 66 VSP--DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
++AL +IR + ++ LR +PELRF YD+SL +++ L+
Sbjct: 59 DKAVVQEKLNALISAAPYIRTLVAGRMK-LRVMPELRFVYDSSLVEGMRMSNLVSQ 113
>gi|326771729|ref|ZP_08231014.1| ribosome-binding factor A [Actinomyces viscosus C505]
gi|326637862|gb|EGE38763.1| ribosome-binding factor A [Actinomyces viscosus C505]
Length = 165
Score = 100 bits (250), Expect = 7e-20, Method: Composition-based stats.
Identities = 23/95 (24%), Positives = 47/95 (49%), Gaps = 5/95 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDVSPD 69
RA +V + + + +L +D + +++++V ++ DL+ ATV+ ++ D +
Sbjct: 6 RARKVADRIHETVAR-LLQGRIKDPRLG--FVTVTDVRVTGDLQQATVFYTVYGSDEERE 62
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYD 104
AL IR +G++L +R P L F+ D
Sbjct: 63 ETAKALRSAKGLIRSEVGKAL-GIRLTPSLSFQLD 96
>gi|29840225|ref|NP_829331.1| ribosome-binding factor A [Chlamydophila caviae GPIC]
gi|33301499|sp|Q823F3|RBFA_CHLCV RecName: Full=Ribosome-binding factor A
gi|29834573|gb|AAP05209.1| ribosome-binding factor A [Chlamydophila caviae GPIC]
Length = 120
Score = 100 bits (250), Expect = 7e-20, Method: Composition-based stats.
Identities = 31/111 (27%), Positives = 55/111 (49%), Gaps = 3/111 (2%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDV 66
+RR +V +R A+ VIL + + IS I+++ VC+S DL A VY+S +P +
Sbjct: 3 ENRRIKKVNSLLREAIANVILK-DVKHPKISNQWITVTRVCLSKDLHSARVYVSIMPHEN 61
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ + AL + FI + + + L+Y PE+ F + + L+
Sbjct: 62 TSAETLDALKASAGFIAYKASKGV-VLKYFPEIHFYIEDIFSPQDHIENLL 111
>gi|94501383|ref|ZP_01307903.1| ribosome-binding factor A [Oceanobacter sp. RED65]
gi|94426496|gb|EAT11484.1| ribosome-binding factor A [Oceanobacter sp. RED65]
Length = 129
Score = 100 bits (250), Expect = 7e-20, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 57/121 (47%), Gaps = 11/121 (9%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP-- 63
K+ R R+GE+++ L ++ + +D + +++++ V ++ DL A +Y ++
Sbjct: 2 AKDYSRTQRLGEQIKRELAHML-QFDVKDPRLG--IVTLNAVKVASDLGYADIYFTVMKS 58
Query: 64 -----LDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
D + LN F+R + + LR R P+ RF YD +L+ KL L+
Sbjct: 59 GMVEADDETVAETEQILNDMSGFLRTELSQILRT-RITPQPRFHYDVALERGHKLTNLIN 117
Query: 119 L 119
Sbjct: 118 Q 118
>gi|33519580|ref|NP_878412.1| ribosome-binding factor A (P15B protein) [Candidatus Blochmannia
floridanus]
gi|39931815|sp|Q7VQM2|RBFA_BLOFL RecName: Full=Ribosome-binding factor A
gi|33517243|emb|CAD83626.1| ribosome-binding factor A (P15B protein) [Candidatus Blochmannia
floridanus]
Length = 117
Score = 100 bits (250), Expect = 7e-20, Method: Composition-based stats.
Identities = 33/114 (28%), Positives = 59/114 (51%), Gaps = 7/114 (6%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
R R+ +E++ + +I++++ D + +IS V +S DL+ A ++I+ + +
Sbjct: 8 RLQRISQEIQRKVA-IIIHHKVHDPRVGLP--TISGVQVSRDLKNAKIFITFLDKNNIEE 64
Query: 71 V---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+ I L FIR + S+ NLR VP L F+YD SL+ K+ L+ K
Sbjct: 65 INFSILILQKASGFIRFLLANSM-NLRTVPVLLFKYDYSLKEGIKICKLISQLK 117
>gi|15900469|ref|NP_345073.1| ribosome-binding factor A [Streptococcus pneumoniae TIGR4]
gi|111657279|ref|ZP_01408045.1| hypothetical protein SpneT_02001517 [Streptococcus pneumoniae
TIGR4]
gi|20978639|sp|Q97S56|RBFA_STRPN RecName: Full=Ribosome-binding factor A
gi|14972032|gb|AAK74713.1| ribosome-binding factor A [Streptococcus pneumoniae TIGR4]
Length = 116
Score = 100 bits (250), Expect = 7e-20, Method: Composition-based stats.
Identities = 27/111 (24%), Positives = 54/111 (48%), Gaps = 6/111 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD--VSP 68
R RVG E++ + ++ + +D + ++I +V M DL VA VY ++ +
Sbjct: 6 RTDRVGMEIKREVNEIL-QKKVRDPRVQG--VTIIDVQMLGDLSVAKVYYTILSNLASDN 62
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ L I+ +GR+L+ L +P+L F D S++ K++ ++
Sbjct: 63 QKAQIGLEKATGTIKRELGRNLK-LYKIPDLTFVKDESIEYGNKIDEMLRN 112
>gi|254424610|ref|ZP_05038328.1| ribosome-binding factor A [Synechococcus sp. PCC 7335]
gi|196192099|gb|EDX87063.1| ribosome-binding factor A [Synechococcus sp. PCC 7335]
Length = 114
Score = 100 bits (250), Expect = 8e-20, Method: Composition-based stats.
Identities = 20/91 (21%), Positives = 49/91 (53%), Gaps = 2/91 (2%)
Query: 30 NEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-DVSPDRVISALNCNIKFIRGRIGR 88
N+ +D + ++SI++V ++ DL+ A +++S+ D + ++ L ++R ++G+
Sbjct: 4 NDIKDDRVGAGMVSITDVDVAGDLQHAKIFVSIYGTDEAKAETMAGLKAAEGYVRRQLGQ 63
Query: 89 SLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
++ LR PE+ F+ D S + ++
Sbjct: 64 RMK-LRRTPEVTFKEDRSFDLATNVLNVLNQ 93
>gi|237739233|ref|ZP_04569714.1| ribosome-binding factor A [Fusobacterium sp. 2_1_31]
gi|229422841|gb|EEO37888.1| ribosome-binding factor A [Fusobacterium sp. 2_1_31]
Length = 120
Score = 100 bits (250), Expect = 8e-20, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 62/119 (52%), Gaps = 10/119 (8%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL----- 64
+R +G+E+ + V+L E ++ I ++S++EV ++ DL+ A Y S+
Sbjct: 4 QRLEGIGKEMMRVISKVLL-EEVKNPKIKG-LVSVTEVNVTEDLKFADTYFSILPPLNNE 61
Query: 65 --DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+ ++ ALN F+R R+ + ++R+ PE+R + D S+++ K+ L+ K
Sbjct: 62 EKQYDNEEILEALNEIKGFLRKRVAEEV-DIRFTPEIRVKLDNSMENAMKITKLLNDLK 119
>gi|298528718|ref|ZP_07016122.1| ribosome-binding factor A [Desulfonatronospira thiodismutans
ASO3-1]
gi|298512370|gb|EFI36272.1| ribosome-binding factor A [Desulfonatronospira thiodismutans
ASO3-1]
Length = 109
Score = 100 bits (250), Expect = 8e-20, Method: Composition-based stats.
Identities = 37/105 (35%), Positives = 61/105 (58%), Gaps = 5/105 (4%)
Query: 5 NPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL 64
P SRRA R+ + + L +I+ E +D ++ +++I+ V M+ DL +A V +
Sbjct: 2 QPATSRRATRMADSIMRELGRIIV-EEARDPRLN--LVTITGVLMNKDLSIARVMYTHIQ 58
Query: 65 DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQS 109
SP+ + AL F+R +G++L+ +RYVPELRF +DT LQ
Sbjct: 59 GPSPE-LEKALGSARGFLRSSLGQNLK-MRYVPELRFEWDTYLQE 101
>gi|118587520|ref|ZP_01544944.1| ribosome binding factor A [Oenococcus oeni ATCC BAA-1163]
gi|118431971|gb|EAV38713.1| ribosome binding factor A [Oenococcus oeni ATCC BAA-1163]
Length = 139
Score = 100 bits (250), Expect = 8e-20, Method: Composition-based stats.
Identities = 24/112 (21%), Positives = 55/112 (49%), Gaps = 6/112 (5%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD--V 66
S R LRV ++ + +++ E D + ++I+ + M+ D +A VY ++ D
Sbjct: 25 SARLLRVEGTIQREISEILVK-EVSDPRLKD--VTITGIDMTPDFSIAYVYWTIYSDLAS 81
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
S ++ + L I+ ++ R + + +P+L F+ DT+++ + L+
Sbjct: 82 SGEKADAGLQAAKGLIKRQLARKMTTFK-IPDLIFKRDTAIEYGDHIEQLIA 132
>gi|161524927|ref|YP_001579939.1| ribosome-binding factor A [Burkholderia multivorans ATCC 17616]
gi|189350323|ref|YP_001945951.1| ribosome-binding factor A [Burkholderia multivorans ATCC 17616]
gi|238687003|sp|A9ABD4|RBFA_BURM1 RecName: Full=Ribosome-binding factor A
gi|160342356|gb|ABX15442.1| ribosome-binding factor A [Burkholderia multivorans ATCC 17616]
gi|189334345|dbj|BAG43415.1| ribosome-binding factor A [Burkholderia multivorans ATCC 17616]
Length = 132
Score = 100 bits (250), Expect = 8e-20, Method: Composition-based stats.
Identities = 27/127 (21%), Positives = 56/127 (44%), Gaps = 6/127 (4%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
M K + R +++ ++++ L +I+ E +D I +++I V ++ D A VY
Sbjct: 1 MSRKRTSPN-RNVQIADQIQRDLSELIMR-EVKDPRIG--IVTIQSVELTPDYAHAKVYF 56
Query: 61 SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
+ P ALN + + + L ++ VP L F YD +++ ++ L+
Sbjct: 57 TTLTG-DPAATQQALNHASGHLHNLLFKRL-HIHTVPTLHFHYDQTIEKAVAMSRLIDEA 114
Query: 121 KIPVALE 127
A +
Sbjct: 115 NATRAKD 121
>gi|319427304|gb|ADV55378.1| ribosome-binding factor A [Shewanella putrefaciens 200]
Length = 149
Score = 100 bits (250), Expect = 8e-20, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 59/116 (50%), Gaps = 6/116 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K R R+ ++++ L V+ + +D I +++++V +S DL A V+++ +
Sbjct: 2 AKEFSRTRRIAQQLQQELAQVLQR-DMKDPRIG--FVTVNDVDVSRDLSYAKVFVTFFEE 58
Query: 66 VSP--DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
++AL +IR + ++ LR +PELRF YD+SL +++ L+
Sbjct: 59 DKAVVQEKLNALISAAPYIRTLVAGRMK-LRVMPELRFVYDSSLVEGMRMSNLVSQ 113
>gi|153869167|ref|ZP_01998841.1| Ribosome-binding factor A [Beggiatoa sp. PS]
gi|152074289|gb|EDN71159.1| Ribosome-binding factor A [Beggiatoa sp. PS]
Length = 122
Score = 100 bits (250), Expect = 8e-20, Method: Composition-based stats.
Identities = 27/114 (23%), Positives = 53/114 (46%), Gaps = 5/114 (4%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
K R R+G +++ L +I ++++S + +S DL+ A VY+++ +
Sbjct: 2 KEFSRTQRLGVQIQRELADIIRREIVNP---HLGMLTVSSIDLSPDLKYARVYMTVLGEQ 58
Query: 67 SP-DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
I LN +R + + L R P L+F +D S++ +L+AL+
Sbjct: 59 QGVKYTIQHLNQVAGRLRYHLSQRLTT-RTTPRLKFVHDNSIEESSRLSALINS 111
>gi|320547933|ref|ZP_08042216.1| ribosome-binding factor A [Streptococcus equinus ATCC 9812]
gi|320447473|gb|EFW88233.1| ribosome-binding factor A [Streptococcus equinus ATCC 9812]
Length = 116
Score = 100 bits (249), Expect = 8e-20, Method: Composition-based stats.
Identities = 25/118 (21%), Positives = 56/118 (47%), Gaps = 6/118 (5%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD--V 66
+ R RVG E++ + ++ + +D + ++I++V M DL +A VY ++ +
Sbjct: 3 NHRVDRVGMEIKREVNEILHK-KVRDPRVQD--VTITDVQMLGDLSMAKVYYTIHSELAS 59
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPV 124
+ L I+ +GR+L + +P+L F D S++ K++ ++ +
Sbjct: 60 DNQKAQIGLEKAKGTIKRELGRNL-TMYKIPDLTFIKDESIEYGNKIDQMLRDLEAKK 116
>gi|90022352|ref|YP_528179.1| ribosome-binding factor A [Saccharophagus degradans 2-40]
gi|123090262|sp|Q21H62|RBFA_SACD2 RecName: Full=Ribosome-binding factor A
gi|89951952|gb|ABD81967.1| ribosome-binding factor A [Saccharophagus degradans 2-40]
Length = 128
Score = 100 bits (249), Expect = 9e-20, Method: Composition-based stats.
Identities = 29/126 (23%), Positives = 60/126 (47%), Gaps = 8/126 (6%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL- 64
P+ R+ R+ + ++ +L VI E +D + +++I+ V ++ DL +A VY+++
Sbjct: 2 PREFFRSDRIADAIQRSLARVI-QTEVRDPRLG--LVNINSVDVTRDLSIAKVYVTVVGA 58
Query: 65 --DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
+ + + LN F+R I + L +R P L F YD + L+ L+ +
Sbjct: 59 KEESESEVAVKVLNKAAGFLRNVIAKEL-TMRSAPRLSFFYDRTAVQGQNLSNLIDR-AV 116
Query: 123 PVALEK 128
++
Sbjct: 117 AADKQR 122
>gi|168062353|ref|XP_001783145.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162665343|gb|EDQ52031.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 140
Score = 100 bits (249), Expect = 9e-20, Method: Composition-based stats.
Identities = 33/131 (25%), Positives = 64/131 (48%), Gaps = 15/131 (11%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLIS-----------RDVISISEVCMSVDLRVATV 58
RR V +++ L ++L++ + I + +I++V +S DL+VA V
Sbjct: 8 RRVKMVQQQIHRELADMLLHDTVLRQAIVPESGLGADMYLSSMATITDVEISNDLQVAKV 67
Query: 59 YISLPLDVSPDRV-ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
++SL D V + L K++R +G+ + +LR P++RF D SL+ ++ L+
Sbjct: 68 FVSLYGDEREQEVALEGLKSKAKYVRMGLGKRM-SLRMTPDVRFVKDESLERGSRVLELL 126
Query: 118 CLPKIPVALEK 128
K+ E+
Sbjct: 127 --DKVKKDRER 135
>gi|295693133|ref|YP_003601743.1| ribosome-binding factor a [Lactobacillus crispatus ST1]
gi|295031239|emb|CBL50718.1| Ribosome-binding factor A [Lactobacillus crispatus ST1]
Length = 121
Score = 100 bits (249), Expect = 9e-20, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 6/118 (5%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS-- 67
R RV E+ L ++ N +D +S ++I+ V + DL ATVY SL +
Sbjct: 3 HRIGRVEGEILRELTKILQKN-IRDPRLSG--VTITAVECTNDLSYATVYYSLLTEDEHK 59
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
+ V + +R +G++L + VPEL F+ D S+ K++ L+ K A
Sbjct: 60 EEEVQAGFEKAKGMMRHLLGQTLTVYK-VPELIFKRDNSVLYGSKIDRLIAEVKKQDA 116
>gi|9558382|emb|CAC00494.1| ribosome binding factor A [Streptococcus agalactiae]
gi|9558385|emb|CAC00496.1| ribosome binding factor A [Streptococcus agalactiae]
Length = 122
Score = 100 bits (249), Expect = 9e-20, Method: Composition-based stats.
Identities = 26/121 (21%), Positives = 56/121 (46%), Gaps = 6/121 (4%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
MK + R RVG E++ + ++ D + ++I++V M DL +A V+
Sbjct: 1 MKKGLIMANHRIDRVGMEIKREVNEIL-RFRVNDPRVQD--VTITDVQMLGDLSMAKVFY 57
Query: 61 SLP--LDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
++ L + L I+ +G++L + +P+L+F D S++ K++ ++
Sbjct: 58 TIHSTLASDNQKAQIGLEKATGTIKRELGKNL-TMYKIPDLQFVKDESIEYGNKIDEMLR 116
Query: 119 L 119
Sbjct: 117 N 117
>gi|282889769|ref|ZP_06298308.1| hypothetical protein pah_c004o142 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|281500343|gb|EFB42623.1| hypothetical protein pah_c004o142 [Parachlamydia acanthamoebae str.
Hall's coccus]
Length = 132
Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats.
Identities = 26/113 (23%), Positives = 54/113 (47%), Gaps = 4/113 (3%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-DVSP 68
+R R+ +R + VI + ++ +S + +++ V ++ DLR A VY+S+
Sbjct: 4 QRTDRLNSLLREVITEVI-KKDVRNPYVSE-MTTVTRVDITKDLRHAKVYVSIMGTGAEK 61
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+ + AL FI + + +R+ PEL F D S+ ++ +L+ +
Sbjct: 62 EDTLQALRSAAGFIAVNSSQKV-VMRFFPELTFVLDDSVDRQMRIESLLREIE 113
>gi|171778099|ref|ZP_02919356.1| hypothetical protein STRINF_00191 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|171283081|gb|EDT48505.1| hypothetical protein STRINF_00191 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
Length = 118
Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats.
Identities = 25/118 (21%), Positives = 56/118 (47%), Gaps = 6/118 (5%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD--V 66
+ R RVG E++ + ++ + +D + ++I++V M DL +A VY ++ +
Sbjct: 5 NHRVDRVGMEIKREVNEILHK-KVRDPRVQD--VTITDVQMLGDLSMAKVYYTIHSELAS 61
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPV 124
+ L I+ +GR+L + +P+L F D S++ K++ ++ +
Sbjct: 62 DNQKAQIGLEKAKGTIKRELGRNL-TMYKIPDLTFIKDESIEYGNKIDQMLRDLEAKK 118
>gi|91200790|emb|CAJ73843.1| similar to ribosome-binding factor A [Candidatus Kuenenia
stuttgartiensis]
Length = 125
Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 58/112 (51%), Gaps = 5/112 (4%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
+ RRA R+ E ++ + +IL + +D +S I+++EV +S DL+ VY+S+ +
Sbjct: 1 MSKRRAERLSEFIKQEVSKIILY-KVKDPRLS--FITVTEVDISADLKNVKVYVSVLGNE 57
Query: 67 -SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ L+ FI+ +G LR ++Y P L+F D + ++ ++
Sbjct: 58 LERKNTMCGLDHAKGFIQTELGSCLR-IKYTPHLKFCLDELTEKRNRILKII 108
>gi|325067085|ref|ZP_08125758.1| ribosome-binding factor A [Actinomyces oris K20]
Length = 165
Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats.
Identities = 23/95 (24%), Positives = 47/95 (49%), Gaps = 5/95 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDVSPD 69
RA +V + + + +L +D + +++++V ++ DL+ ATV+ ++ D +
Sbjct: 6 RARKVADRIHETVAR-LLQGRIKDPRLG--FVTVTDVRVTGDLQQATVFYTVYGSDEERE 62
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYD 104
AL IR +G++L +R P L F+ D
Sbjct: 63 ETAKALRSAKGLIRSEVGKAL-GIRLTPSLSFQLD 96
>gi|225016946|ref|ZP_03706138.1| hypothetical protein CLOSTMETH_00861 [Clostridium methylpentosum
DSM 5476]
gi|224950340|gb|EEG31549.1| hypothetical protein CLOSTMETH_00861 [Clostridium methylpentosum
DSM 5476]
Length = 115
Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats.
Identities = 24/109 (22%), Positives = 51/109 (46%), Gaps = 4/109 (3%)
Query: 14 RVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD-VSPDRVI 72
R+ E+++ L +L + +D I ++S V ++ D A VY+S + +
Sbjct: 8 RLAEDIKRELS--VLVRDLKDPRIKGKMLSFVRVEVTNDQSFAKVYVSSMEGMEAAKEAV 65
Query: 73 SALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
L F++ + +L ++R P+++F D S++ LN L+ +
Sbjct: 66 EGLKSASGFVKRELSNTL-HMRKCPDIKFIPDDSIEYSAHLNKLLLDIE 113
>gi|332704830|ref|ZP_08424918.1| Ribosome-binding factor A [Desulfovibrio africanus str. Walvis Bay]
gi|332554979|gb|EGJ52023.1| Ribosome-binding factor A [Desulfovibrio africanus str. Walvis Bay]
Length = 110
Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats.
Identities = 36/102 (35%), Positives = 62/102 (60%), Gaps = 5/102 (4%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS 67
SRR++R+ EE+ L ++ E QD + ++++S V ++ D+ VA V+++ ++
Sbjct: 5 TSRRSVRLSEEIMRELGNLLA-EEVQDPRLE--LVTVSGVRLNADISVAEVFVTYSAELH 61
Query: 68 P-DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
P + V AL F+R R+G+ L+ LR VPELRFR+D L+
Sbjct: 62 PREDVDKALEKAKGFLRTRLGKRLK-LRKVPELRFRFDEFLE 102
>gi|154494028|ref|ZP_02033348.1| hypothetical protein PARMER_03373 [Parabacteroides merdae ATCC
43184]
gi|154086288|gb|EDN85333.1| hypothetical protein PARMER_03373 [Parabacteroides merdae ATCC
43184]
Length = 111
Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats.
Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 4/112 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
S R ++ ++ L + Q + + +IS+S V +S DL VA Y+S+
Sbjct: 1 MESTRLSKIERLLQKELSDIFQK---QTQAMHGILISVSVVRVSPDLSVARAYLSIFPSD 57
Query: 67 SPDRVISALNCNIKFIRGRIGRSLR-NLRYVPELRFRYDTSLQSYWKLNALM 117
++ + N K IR +G+ +R +R +PEL F D SL ++ L+
Sbjct: 58 KSKEMLENIRANTKAIRFDLGQRIRKQVRKIPELTFFIDDSLDYIENIDNLL 109
>gi|27904829|ref|NP_777955.1| ribosome-binding factor A [Buchnera aphidicola str. Bp (Baizongia
pistaciae)]
gi|27904227|gb|AAO27060.1| ribosome-binding factor A [Buchnera aphidicola str. Bp (Baizongia
pistaciae)]
Length = 124
Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats.
Identities = 27/111 (24%), Positives = 56/111 (50%), Gaps = 4/111 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP-- 68
R+ ++ E++ + W+I D + +IS+S V +S D A +Y+S+ + +
Sbjct: 11 RSFKISNEIKKKISWIICYQ-LCDPRLFNILISVSSVNLSRDFSYAKIYVSILNNKNISF 69
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+++ L + K IR + + + LR +P L F +D+S + K+ L+
Sbjct: 70 KEILTILQNSSKHIRYLLAKGI-FLRIIPTLHFCHDSSYVNGTKITNLINN 119
>gi|326516090|dbj|BAJ88068.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 212
Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 30/128 (23%), Positives = 61/128 (47%), Gaps = 13/128 (10%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDR-----------LISRDVISISEVCMSVDLRVATV 58
RR V ++++ L ++ + R + +I++V +S DL+V V
Sbjct: 48 RRVRMVAKQIQRELADMLTRDPVMQRAVLPEAALGADRYLSSLTTIADVELSNDLQVCKV 107
Query: 59 YISLPLDVSPDRV-ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
Y+S+ D +V ++ L K++R +IG+ ++ LR PE+RF D S++ ++ ++
Sbjct: 108 YVSVFGDERGKKVAMAGLKDKTKYVRSQIGKRMK-LRLTPEIRFIEDESMERGSRILTIL 166
Query: 118 CLPKIPVA 125
K
Sbjct: 167 DKLKEERE 174
>gi|227878815|ref|ZP_03996722.1| ribosome-binding factor A [Lactobacillus crispatus JV-V01]
gi|256843337|ref|ZP_05548825.1| ribosome-binding factor A [Lactobacillus crispatus 125-2-CHN]
gi|256849844|ref|ZP_05555275.1| ribosome-binding factor A [Lactobacillus crispatus MV-1A-US]
gi|262046910|ref|ZP_06019870.1| ribosome-binding factor A [Lactobacillus crispatus MV-3A-US]
gi|293381218|ref|ZP_06627226.1| ribosome-binding factor A [Lactobacillus crispatus 214-1]
gi|312978239|ref|ZP_07789983.1| ribosome-binding factor A [Lactobacillus crispatus CTV-05]
gi|227861563|gb|EEJ69175.1| ribosome-binding factor A [Lactobacillus crispatus JV-V01]
gi|256614757|gb|EEU19958.1| ribosome-binding factor A [Lactobacillus crispatus 125-2-CHN]
gi|256713333|gb|EEU28323.1| ribosome-binding factor A [Lactobacillus crispatus MV-1A-US]
gi|260572892|gb|EEX29452.1| ribosome-binding factor A [Lactobacillus crispatus MV-3A-US]
gi|290922258|gb|EFD99252.1| ribosome-binding factor A [Lactobacillus crispatus 214-1]
gi|310894957|gb|EFQ44027.1| ribosome-binding factor A [Lactobacillus crispatus CTV-05]
Length = 121
Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 31/111 (27%), Positives = 53/111 (47%), Gaps = 6/111 (5%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS-- 67
R RV E+ L ++ N +D +S ++I+ V + DL ATVY SL +
Sbjct: 3 HRIGRVEGEILRELTKILQKN-IRDPRLSG--VTITAVECTNDLSYATVYYSLLTEDEHK 59
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ V + +R +G++L + VPEL F+ D S+ K++ L+
Sbjct: 60 EEEVQAGFEKAKGMMRHLLGQTLTVYK-VPELIFKRDNSVLYGSKIDRLIA 109
>gi|329944621|ref|ZP_08292761.1| ribosome-binding factor A [Actinomyces sp. oral taxon 170 str.
F0386]
gi|328530174|gb|EGF57057.1| ribosome-binding factor A [Actinomyces sp. oral taxon 170 str.
F0386]
Length = 180
Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 23/95 (24%), Positives = 47/95 (49%), Gaps = 5/95 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDVSPD 69
RA +V + + + +L +D + +++++V ++ DL+ ATV+ ++ D +
Sbjct: 6 RARKVADRIHETVAR-LLQGRIKDPRLG--FVTVTDVRVTGDLQQATVFYTVYGSDEDRE 62
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYD 104
AL IR +G++L +R P L F+ D
Sbjct: 63 ETAKALRSAKGLIRSEVGKAL-GIRLTPSLTFQLD 96
>gi|260101361|ref|ZP_05751598.1| ribosome-binding factor A [Lactobacillus helveticus DSM 20075]
gi|260084813|gb|EEW68933.1| ribosome-binding factor A [Lactobacillus helveticus DSM 20075]
gi|328465723|gb|EGF36927.1| ribosome-binding factor A [Lactobacillus helveticus MTCC 5463]
Length = 121
Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 55/121 (45%), Gaps = 7/121 (5%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV--S 67
R RV E+ L ++ N +D +S ++I+ V DL ATVY SL +
Sbjct: 3 HRIGRVEGEILRELTKILQKN-IRDPRLSE--VTITAVECVNDLSYATVYYSLLTEDANK 59
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALE 127
V L +R +G++L + VPEL F+ D S++ K++ L+ K E
Sbjct: 60 EKEVQEGLEKAKGMMRHLLGQTLTVYK-VPELIFKRDNSVKYGSKIDRLIAEVK-KQDAE 117
Query: 128 K 128
+
Sbjct: 118 R 118
>gi|22536565|ref|NP_687416.1| ribosome-binding factor A [Streptococcus agalactiae 2603V/R]
gi|25010491|ref|NP_734886.1| ribosome-binding factor A [Streptococcus agalactiae NEM316]
gi|22533400|gb|AAM99288.1|AE014209_1 ribosome-binding factor A [Streptococcus agalactiae 2603V/R]
gi|3947715|emb|CAA05920.1| ribosome binding factor A [Streptococcus agalactiae]
gi|9558370|emb|CAC00486.1| ribosome binding factor A [Streptococcus agalactiae]
gi|9558373|emb|CAC00488.1| ribosome binding factor A [Streptococcus agalactiae]
gi|9558376|emb|CAC00490.1| ribosome binding factor A [Streptococcus agalactiae]
gi|9558379|emb|CAC00492.1| ribosome binding factor A [Streptococcus agalactiae]
gi|9558388|emb|CAC00498.1| ribosome binding factor A [Streptococcus agalactiae]
gi|23094844|emb|CAD46062.1| ribosome binding factor A [Streptococcus agalactiae NEM316]
gi|319744366|gb|EFV96726.1| ribosome-binding factor A [Streptococcus agalactiae ATCC 13813]
Length = 122
Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 26/121 (21%), Positives = 56/121 (46%), Gaps = 6/121 (4%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
MK + R RVG E++ + ++ D + ++I++V M DL +A V+
Sbjct: 1 MKKGLIMANHRIDRVGMEIKREVNEIL-RLRVNDPRVQD--VTITDVQMLGDLSMAKVFY 57
Query: 61 SLP--LDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
++ L + L I+ +G++L + +P+L+F D S++ K++ ++
Sbjct: 58 TIHSTLASDNQKAQIGLEKATGTIKRELGKNL-TMYKIPDLQFVKDESIEYGNKIDEMLR 116
Query: 119 L 119
Sbjct: 117 N 117
>gi|312796188|ref|YP_004029110.1| ribosome-binding factor A [Burkholderia rhizoxinica HKI 454]
gi|312167963|emb|CBW74966.1| Ribosome-binding factor A [Burkholderia rhizoxinica HKI 454]
Length = 122
Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 27/127 (21%), Positives = 57/127 (44%), Gaps = 6/127 (4%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
M+ K R +R+ ++++ L +I E +D I +++I V ++ D A V+
Sbjct: 1 MRKKRSSG-DRNVRIADQIQRDLSELIAR-EVKDPRIG--LVTIQAVELTPDYAHAKVFF 56
Query: 61 SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
+ P + ALN + + + L ++ VP L F +D S++ +++ L+
Sbjct: 57 TTLT-ADPRQTQEALNHAAGHLHNLLFKRL-HIHTVPTLHFMFDESIEKAVQMSRLIDEA 114
Query: 121 KIPVALE 127
A +
Sbjct: 115 NATRAKD 121
>gi|163754470|ref|ZP_02161592.1| ribosome-binding factor A [Kordia algicida OT-1]
gi|161325411|gb|EDP96738.1| ribosome-binding factor A [Kordia algicida OT-1]
Length = 133
Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 26/119 (21%), Positives = 58/119 (48%), Gaps = 2/119 (1%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS 67
S R ++ ++ L+ ++ + ++ +IS+++V ++VDL VA VY+S+
Sbjct: 5 ESNRQKKIAGVLQKDLVDIL-QGAARGGGLTNVIISVTKVNVTVDLSVAKVYLSIFPHNK 63
Query: 68 PDRVISALNCNIKFIRGRIGRSLRN-LRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
++ + N I+ + + +++ LR VP L F D SL+ + + + P+
Sbjct: 64 GKELLEGIQSNAPLIKHELAQRVKHQLRKVPSLTFYVDDSLEYIENIEKSLKGEENPIE 122
>gi|116515163|ref|YP_802792.1| hypothetical protein BCc_230 [Buchnera aphidicola str. Cc (Cinara
cedri)]
gi|122285441|sp|Q057K0|RBFA_BUCCC RecName: Full=Ribosome-binding factor A
gi|116257017|gb|ABJ90699.1| ribosome-binding factor A [Buchnera aphidicola str. Cc (Cinara
cedri)]
Length = 116
Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 31/116 (26%), Positives = 57/116 (49%), Gaps = 6/116 (5%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
K+ R++R+ + + VI+ +D ++ I+I+EV +S DL A V+I+
Sbjct: 3 KDFSRSMRLERSLYKEIA-VIIQKNLRDPRLNS-FITITEVKLSYDLSYAKVFITFLNYD 60
Query: 67 SPDR---VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
++ L +IR + + + LR VP+L F YDTSL + ++ L+
Sbjct: 61 DKKNIKIILGILQNATGYIRSLLNKKI-YLRIVPKLFFVYDTSLINGIFISELIKN 115
>gi|304410264|ref|ZP_07391883.1| ribosome-binding factor A [Shewanella baltica OS183]
gi|307302025|ref|ZP_07581783.1| ribosome-binding factor A [Shewanella baltica BA175]
gi|304351673|gb|EFM16072.1| ribosome-binding factor A [Shewanella baltica OS183]
gi|306914063|gb|EFN44484.1| ribosome-binding factor A [Shewanella baltica BA175]
Length = 152
Score = 99.3 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 60/116 (51%), Gaps = 6/116 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K R R+ ++++ L V+ + +D I +++++V +S DL A V+++ +
Sbjct: 2 AKEFSRTRRIAQQLQQELAQVLQR-DMKDPRIG--FVTVNDVDVSRDLSYAKVFVTFFEE 58
Query: 66 VSP--DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ ++AL +IR + ++ LR +PELRF YD+SL +++ L+
Sbjct: 59 DNAVVQEKLNALISAAPYIRTLVAGRMK-LRVMPELRFIYDSSLVEGMRMSNLVSQ 113
>gi|297180951|gb|ADI17154.1| ribosome-binding factor a [uncultured gamma proteobacterium
HF0070_08D07]
Length = 130
Score = 99.3 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 31/112 (27%), Positives = 58/112 (51%), Gaps = 6/112 (5%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP---LDV 66
R+ ++G+ R + +I N +D + + +IS++EV ++ DL A VY+S +
Sbjct: 17 SRSEKIGDLFRDEIATIIQRN-LRDPRLVK-IISVNEVSVAKDLAYADVYVSSFETQDED 74
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+I +LN FIR + + +R P+LRF YD + + +L +L+
Sbjct: 75 QKQELILSLNGASGFIRTILSK-THKMRSTPKLRFHYDDTYERVARLESLIA 125
>gi|172044106|sp|A3D7K5|RBFA_SHEB5 RecName: Full=Ribosome-binding factor A
gi|172044119|sp|A6WRG7|RBFA_SHEB8 RecName: Full=Ribosome-binding factor A
Length = 152
Score = 99.3 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 59/116 (50%), Gaps = 6/116 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K R R+ ++++ L V+ + +D I +++++V +S DL A V+++ +
Sbjct: 2 AKEFSRTRRIAQQLQQELAQVLQR-DMKDPRIG--FVTVNDVDVSRDLSYAKVFVTFFEE 58
Query: 66 VSP--DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
++AL +IR + ++ LR +PELRF YD+SL +++ L+
Sbjct: 59 DKAVVQEKLNALISAAPYIRTLVAGRMK-LRVMPELRFIYDSSLVEGMRMSNLVSQ 113
>gi|189039674|sp|A9KZX0|RBFA_SHEB9 RecName: Full=Ribosome-binding factor A
gi|315268716|gb|ADT95569.1| ribosome-binding factor A [Shewanella baltica OS678]
Length = 152
Score = 99.3 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 59/116 (50%), Gaps = 6/116 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K R R+ ++++ L V+ + +D I +++++V +S DL A V+++ +
Sbjct: 2 AKEFSRTRRIAQQLQQELAQVLQR-DMKDPRIG--FVTVNDVDVSRDLSYAKVFVTFFEE 58
Query: 66 VSP--DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
++AL +IR + ++ LR +PELRF YD+SL +++ L+
Sbjct: 59 DKAVVQEKLNALISAAPYIRTLVAGRMK-LRVMPELRFIYDSSLVEGMRMSNLVSQ 113
>gi|161507680|ref|YP_001577634.1| ribosome-binding factor A [Lactobacillus helveticus DPC 4571]
gi|172048307|sp|A8YVQ6|RBFA_LACH4 RecName: Full=Ribosome-binding factor A
gi|160348669|gb|ABX27343.1| ribosome binding factor A [Lactobacillus helveticus DPC 4571]
gi|323466341|gb|ADX70028.1| Ribosome-binding factor A [Lactobacillus helveticus H10]
Length = 121
Score = 99.3 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 55/121 (45%), Gaps = 7/121 (5%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV--S 67
R RV E+ L ++ N +D +S ++I+ V DL ATVY SL +
Sbjct: 3 HRIGRVEGEILRELTKILQKN-IRDPRLSE--VTITAVECMNDLSYATVYYSLLTEDANK 59
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALE 127
V L +R +G++L + VPEL F+ D S++ K++ L+ K E
Sbjct: 60 EKEVQEGLEKAKGMMRHLLGQTLTVYK-VPELIFKRDNSVKYGSKIDRLIAEVK-KQDAE 117
Query: 128 K 128
+
Sbjct: 118 R 118
>gi|319760249|ref|YP_004124187.1| ribosome-binding factor A [Candidatus Blochmannia vafer str. BVAF]
gi|318038963|gb|ADV33513.1| ribosome-binding factor A [Candidatus Blochmannia vafer str. BVAF]
Length = 122
Score = 99.3 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 36/116 (31%), Positives = 59/116 (50%), Gaps = 7/116 (6%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
+ S R R+ +E++ + VI+ + D I +IS V +S DLR A V+I+
Sbjct: 4 RRSNRIQRISQEIQRKIS-VIIQQKVHDPRIGVP--TISGVQVSKDLRYAKVFITFLDKN 60
Query: 67 SPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
S + + I+ L FIR + RS+ N R +P L F+YD+SL ++ L+
Sbjct: 61 SSEEINSAIAILQKASCFIRFLLARSV-NFRIIPILSFKYDSSLMVGLRVGDLVSQ 115
>gi|254252536|ref|ZP_04945854.1| ribosome-binding factor A [Burkholderia dolosa AUO158]
gi|124895145|gb|EAY69025.1| ribosome-binding factor A [Burkholderia dolosa AUO158]
Length = 132
Score = 99.3 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 55/117 (47%), Gaps = 6/117 (5%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
M K + R +++ ++++ L +I+ E +D I +++I V ++ D A VY
Sbjct: 1 MSRKRTSPN-RNVQIADQIQRDLSELIMR-EVKDPRIG--IVTIQSVELTPDYAHAKVYF 56
Query: 61 SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ P ALN + + + L ++ VP L F YD +++ +++ L+
Sbjct: 57 TALTG-DPASTQDALNHASGHLHNLLFKRL-HIHTVPTLHFHYDRTIEKAVEMSRLI 111
>gi|302670331|ref|YP_003830291.1| ribosome-binding factor A RbfA [Butyrivibrio proteoclasticus B316]
gi|302394804|gb|ADL33709.1| ribosome-binding factor A RbfA [Butyrivibrio proteoclasticus B316]
Length = 142
Score = 99.3 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 28/110 (25%), Positives = 54/110 (49%), Gaps = 5/110 (4%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLD 65
KNS + R+ EV + + + +D IS + S+ +V ++ DL+ V+++ + D
Sbjct: 3 KNSNKNKRINGEVMKVISEALRYS--KDPRISP-MTSVMDVEVAPDLKTCKVWVTVMGDD 59
Query: 66 VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNA 115
R L ++R + + L N+RY PE+RF D S++ ++
Sbjct: 60 EDRARTAEGLKSAAGYVRSTLAKEL-NMRYTPEIRFIMDDSIEYAINMSK 108
>gi|104774210|ref|YP_619190.1| ribosome-binding factor A [Lactobacillus delbrueckii subsp.
bulgaricus ATCC 11842]
gi|116514298|ref|YP_813204.1| ribosome-binding factor A [Lactobacillus delbrueckii subsp.
bulgaricus ATCC BAA-365]
gi|300812562|ref|ZP_07092979.1| ribosome-binding factor A [Lactobacillus delbrueckii subsp.
bulgaricus PB2003/044-T3-4]
gi|313124027|ref|YP_004034286.1| ribosome-binding factor a [Lactobacillus delbrueckii subsp.
bulgaricus ND02]
gi|122274970|sp|Q049V6|RBFA_LACDB RecName: Full=Ribosome-binding factor A
gi|122397112|sp|Q1G9Q0|RBFA_LACDA RecName: Full=Ribosome-binding factor A
gi|103423291|emb|CAI98132.1| Ribosome-binding factor A [Lactobacillus delbrueckii subsp.
bulgaricus ATCC 11842]
gi|116093613|gb|ABJ58766.1| ribosome-binding factor A [Lactobacillus delbrueckii subsp.
bulgaricus ATCC BAA-365]
gi|300496435|gb|EFK31540.1| ribosome-binding factor A [Lactobacillus delbrueckii subsp.
bulgaricus PB2003/044-T3-4]
gi|312280590|gb|ADQ61309.1| Ribosome-binding factor A [Lactobacillus delbrueckii subsp.
bulgaricus ND02]
gi|325125996|gb|ADY85326.1| Ribosome-binding factor A [Lactobacillus delbrueckii subsp.
bulgaricus 2038]
gi|325685942|gb|EGD28005.1| ribosome-binding factor A [Lactobacillus delbrueckii subsp. lactis
DSM 20072]
Length = 120
Score = 98.9 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 33/114 (28%), Positives = 51/114 (44%), Gaps = 6/114 (5%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP- 68
R RV E+ L +I N +D +S ++ + V S D ATVY SL +
Sbjct: 3 HRKGRVEGEILRELTKIIRKN-IRDPRVSN--VTFTAVECSNDFSYATVYYSLLTEDEQA 59
Query: 69 -DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+ L +R +G+SL + VPEL F+ D S+ K++ L+ K
Sbjct: 60 QKEAEAGLEKAKGTMRHLLGQSL-TMYKVPELIFKRDQSVIYGSKIDRLLADLK 112
>gi|145589408|ref|YP_001156005.1| ribosome-binding factor A [Polynucleobacter necessarius subsp.
asymbioticus QLW-P1DMWA-1]
gi|182676542|sp|A4SY77|RBFA_POLSQ RecName: Full=Ribosome-binding factor A
gi|145047814|gb|ABP34441.1| ribosome-binding factor A [Polynucleobacter necessarius subsp.
asymbioticus QLW-P1DMWA-1]
Length = 122
Score = 98.9 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 57/119 (47%), Gaps = 8/119 (6%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
M +P R R+ ++++ L +I R S +I++ + +S DL A V+
Sbjct: 1 MHKTSP---HRNQRLADQIQRDLAELIPREL---RSTSLGLITLQSIELSPDLAHAKVFF 54
Query: 61 SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
++ L P+ + AL ++ + + L ++ VP L F YD+S++ +++ L+
Sbjct: 55 TV-LGAEPEHALKALQEKAGYLHSLLFKRL-HIHTVPTLHFHYDSSVEHGIEMSRLIDQ 111
>gi|86131462|ref|ZP_01050060.1| Ribosome-binding factor A [Dokdonia donghaensis MED134]
gi|85817907|gb|EAQ39075.1| Ribosome-binding factor A [Dokdonia donghaensis MED134]
Length = 130
Score = 98.9 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 55/118 (46%), Gaps = 2/118 (1%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
S R +V ++ L V+ N +D ++S+++V + DL +A VY+S+ +
Sbjct: 1 MESNRQKKVAGVLQKDLAEVL-QNALRDSGQGGIIVSVTKVKVPTDLSIAKVYLSIFPND 59
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRN-LRYVPELRFRYDTSLQSYWKLNALMCLPKIP 123
++ +N IR I + R+ LR +PEL+F D +L+ + + P
Sbjct: 60 KATEILKEVNQVKPIIRHNISQRTRHQLRRMPELQFYIDDTLEYLDGIERSLKGGDNP 117
>gi|295098912|emb|CBK88001.1| ribosome-binding factor A [Eubacterium cylindroides T2-87]
Length = 111
Score = 98.9 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 19/108 (17%), Positives = 51/108 (47%), Gaps = 5/108 (4%)
Query: 13 LRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRV- 71
R+ ++ + ++ + ++ + +++++V + DL A VY++ +
Sbjct: 6 ERLDMILQREISNIL-QFDLKNPKLG--FVTVTDVQCTRDLSQAKVYVTFLGKQERNDAG 62
Query: 72 ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ L + FIR + + + +R +P+L F DTSL+ ++ ++
Sbjct: 63 MKILKQSKGFIRSTLAKRM-TIRKMPDLIFIQDTSLEQGNRIERILKD 109
>gi|332291313|ref|YP_004429922.1| ribosome-binding factor A [Krokinobacter diaphorus 4H-3-7-5]
gi|332169399|gb|AEE18654.1| ribosome-binding factor A [Krokinobacter diaphorus 4H-3-7-5]
Length = 130
Score = 98.9 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 56/118 (47%), Gaps = 2/118 (1%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
S R +V ++ L V+ N +D ++S+++V + DL +A VY+S+ +
Sbjct: 1 MESNRQKKVAGVLQKDLAEVL-QNALRDSGKGGIIVSVTKVKVPTDLSIAKVYLSVFPND 59
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRN-LRYVPELRFRYDTSLQSYWKLNALMCLPKIP 123
++ +N IR I + R+ LR +PEL+F D +L+ + + + P
Sbjct: 60 KAADILKEVNQVKPIIRHNISQRTRHQLRRMPELQFFIDDTLEYLDGIERSLKREENP 117
>gi|119713527|gb|ABL97580.1| ribosome-binding factor A [uncultured marine bacterium EB0_35D03]
Length = 112
Score = 98.9 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 33/112 (29%), Positives = 59/112 (52%), Gaps = 5/112 (4%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
+ S RA RV E +R L+ ++L+ E +D + + I++V +S DL A V+ S+
Sbjct: 4 QTSYRAERVNELIRRELV-LLLSKETKDPRLQE--VVITDVKVSRDLTSAKVFFSVDASA 60
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
V + LN F R + + + +LR+ P L F YDT+ + +++ L+
Sbjct: 61 QK-TVTTLLNKASGFFRSSLSK-VLDLRHTPALIFIYDTAPNTGARMDDLLS 110
>gi|294101961|ref|YP_003553819.1| ribosome-binding factor A [Aminobacterium colombiense DSM 12261]
gi|293616941|gb|ADE57095.1| ribosome-binding factor A [Aminobacterium colombiense DSM 12261]
Length = 130
Score = 98.9 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 32/111 (28%), Positives = 58/111 (52%), Gaps = 4/111 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
R R+ ++++ + ++L + ++ + +I+ EV S DL VATV+
Sbjct: 5 RMQRINKQLQREIC-LLLEYKIKNDVAKDAIIT--EVSCSKDLEVATVFFVTLDQKQRKA 61
Query: 71 VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
V+ AL IR +G+ LR LR +PE+RF D+S+ +++AL+ K
Sbjct: 62 VLKALESVAGPIRSLLGKRLR-LRQIPEIRFEIDSSVDYGRRIDALLDSIK 111
>gi|325519609|gb|EGC98958.1| ribosome-binding factor A [Burkholderia sp. TJI49]
Length = 121
Score = 98.9 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 24/113 (21%), Positives = 51/113 (45%), Gaps = 5/113 (4%)
Query: 15 VGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISA 74
+ ++++ L +I+ E +D I +++I V ++ D A VY + P A
Sbjct: 3 IADQIQRDLSELIMR-EVKDPRIG--IVTIQSVELTPDYAHAKVYFTALTG-DPTATQGA 58
Query: 75 LNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALE 127
LN + + + L ++ VP L F YD +++ +++ L+ A +
Sbjct: 59 LNHASGHLHNLLFKRL-HIHTVPTLHFHYDQTIEKAVEMSRLIKEANATRAKD 110
>gi|228473890|ref|ZP_04058632.1| ribosome-binding factor A [Capnocytophaga gingivalis ATCC 33624]
gi|228274731|gb|EEK13565.1| ribosome-binding factor A [Capnocytophaga gingivalis ATCC 33624]
Length = 130
Score = 98.5 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 61/120 (50%), Gaps = 2/120 (1%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
+ R ++ ++ L ++ Q+ ++ ++S+++V ++VDL +A VYIS+
Sbjct: 1 METNRQKKIAGLLQQDLGDILGR-AVQNGGLTNLILSVTKVAITVDLTLAKVYISVFPSE 59
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRN-LRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
++ A+ N I+ + + +R+ LR +P+L F D SL+ ++ + + P+
Sbjct: 60 QGKEILKAIQSNSFQIKHEVAQRVRHQLRKMPDLSFFLDDSLEYLSQIEHSLKGEENPIE 119
>gi|300770163|ref|ZP_07080042.1| ribosome-binding factor A [Sphingobacterium spiritivorum ATCC
33861]
gi|300762639|gb|EFK59456.1| ribosome-binding factor A [Sphingobacterium spiritivorum ATCC
33861]
Length = 123
Score = 98.5 bits (245), Expect = 3e-19, Method: Composition-based stats.
Identities = 24/113 (21%), Positives = 49/113 (43%), Gaps = 3/113 (2%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
S+R R ++ L + + + I+++ V ++ DL +A VY+S
Sbjct: 2 ATESKRQQRFAGVIQQDLAELFQRDG--NNWAPGAFITVTRVRVTPDLAIARVYLSFLNT 59
Query: 66 VSPDRVISALNCNIKFIRGRIGRSLRN-LRYVPELRFRYDTSLQSYWKLNALM 117
+ I A+ IR ++G ++N R VP+L F D + + ++ +
Sbjct: 60 KTAPEDIKAIRAKTSEIRYKLGSRIKNQARIVPQLEFFLDDTNEYVEHMDKIF 112
>gi|302338539|ref|YP_003803745.1| ribosome-binding factor A [Spirochaeta smaragdinae DSM 11293]
gi|301635724|gb|ADK81151.1| ribosome-binding factor A [Spirochaeta smaragdinae DSM 11293]
Length = 116
Score = 98.5 bits (245), Expect = 3e-19, Method: Composition-based stats.
Identities = 27/109 (24%), Positives = 54/109 (49%), Gaps = 3/109 (2%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS 67
+ R RV +++ + +IL +D ++ + +++ V +S D+ A VYIS
Sbjct: 3 ENIRLRRVESSIQNEIGMMILRQMIKDPRVTETM-TVTRVEVSKDIAYAKVYISSLAGEH 61
Query: 68 P-DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNA 115
+ + ALN FI+ R+ R ++ + P+LRF D S++ ++
Sbjct: 62 SLEEGVQALNHAAGFIQARVARQIKT-KNTPKLRFFEDHSIELGVEMTR 109
>gi|297571196|ref|YP_003696970.1| ribosome-binding factor A [Arcanobacterium haemolyticum DSM 20595]
gi|296931543|gb|ADH92351.1| ribosome-binding factor A [Arcanobacterium haemolyticum DSM 20595]
Length = 162
Score = 98.1 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 25/108 (23%), Positives = 52/108 (48%), Gaps = 5/108 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV-SPD 69
RA +V E ++ + ++ + + +D + +++I++V ++ DL+ A V+ ++
Sbjct: 5 RAAKVAERIQQVVASML-DKQIKDPRLG--MVTITDVRVTGDLQHADVFYTVFGSEHDAK 61
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+AL IR +G+ L LR P L F D +S + L+
Sbjct: 62 NSGAALKSATGMIRSAVGKQL-GLRLTPTLAFHLDALPESAKSIEDLL 108
>gi|187928211|ref|YP_001898698.1| ribosome-binding factor A [Ralstonia pickettii 12J]
gi|241662815|ref|YP_002981175.1| ribosome-binding factor A [Ralstonia pickettii 12D]
gi|309782262|ref|ZP_07676990.1| ribosome-binding factor A [Ralstonia sp. 5_7_47FAA]
gi|238691808|sp|B2UAA4|RBFA_RALPJ RecName: Full=Ribosome-binding factor A
gi|187725101|gb|ACD26266.1| ribosome-binding factor A [Ralstonia pickettii 12J]
gi|240864842|gb|ACS62503.1| ribosome-binding factor A [Ralstonia pickettii 12D]
gi|308918955|gb|EFP64624.1| ribosome-binding factor A [Ralstonia sp. 5_7_47FAA]
Length = 123
Score = 98.1 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 24/127 (18%), Positives = 61/127 (48%), Gaps = 5/127 (3%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
M K+ + R +R+ ++++ L +I E ++ + ++++ V ++ D A +Y
Sbjct: 1 MPKKSGSAAGRNVRIADQIQRDLAELIQR-EIKNPAMG--LVTLQSVTLTPDYAHAKIYF 57
Query: 61 SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
++ L P+ + LN ++ + + L ++ VP L F +D S++ +++ L+
Sbjct: 58 TV-LGAEPEVAGAILNEKAGYLHSLLFKRL-HIHTVPTLHFHFDGSVERGIEMSRLIDEA 115
Query: 121 KIPVALE 127
A +
Sbjct: 116 NATRAKD 122
>gi|254467808|ref|ZP_05081214.1| ribosome-binding factor A [beta proteobacterium KB13]
gi|207086618|gb|EDZ63901.1| ribosome-binding factor A [beta proteobacterium KB13]
Length = 113
Score = 98.1 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 25/114 (21%), Positives = 55/114 (48%), Gaps = 6/114 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K+ R+ ++G++++ + ++ E Q + ++I+++ +S DLR A +Y
Sbjct: 2 AKDYPRSNQIGQQIKKEIAEIL-QYEIQHPTLVN--VTITDLELSKDLRHAKIY--FISK 56
Query: 66 VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ AL ++ FIR + + + R +P L F YD S+ ++ L+
Sbjct: 57 QDQIELEKALKRSMSFIRQSLSKRMTT-RGIPNLEFIYDHSIDHNDRITELLSS 109
>gi|255534047|ref|YP_003094419.1| ribosome-binding factor A [Pedobacter heparinus DSM 2366]
gi|255347031|gb|ACU06357.1| ribosome-binding factor A [Pedobacter heparinus DSM 2366]
Length = 127
Score = 98.1 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 28/123 (22%), Positives = 55/123 (44%), Gaps = 5/123 (4%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
S+R + ++ L + + +++I++V +S DL VA VY+S
Sbjct: 1 MESKRQQKFAGVIQEELAAIFQREG--SAYLPNTLVTITKVRVSPDLAVAKVYLSFLNTS 58
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRN-LRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
+ ++ +N + IR ++G +R+ R VP L F D + +++ L KI
Sbjct: 59 NTTLSVAEVNSHSGEIRYKLGARIRHQARVVPTLTFFVDDTNTYVEQMDKLF--DKISRD 116
Query: 126 LEK 128
E+
Sbjct: 117 REE 119
>gi|206895632|ref|YP_002247273.1| ribosome-binding factor A [Coprothermobacter proteolyticus DSM
5265]
gi|226736640|sp|B5Y926|RBFA_COPPD RecName: Full=Ribosome-binding factor A
gi|206738249|gb|ACI17327.1| ribosome-binding factor A [Coprothermobacter proteolyticus DSM
5265]
Length = 137
Score = 98.1 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 25/111 (22%), Positives = 58/111 (52%), Gaps = 4/111 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
R R+ + ++ L ++L + D + ++I++V +S D + VY S + ++
Sbjct: 5 RKERLQQAIKQELSKILL-EDMNDERLK--FVTITDVELSDDQKYLKVYFSTMPGKNSEQ 61
Query: 71 VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
++ +L ++ G + R+LR LR+ PE++F D S++ ++ L+ +
Sbjct: 62 ILQSLERVKGYVSGEVARTLR-LRFAPEIKFELDNSIERGVRMVKLLEDLE 111
>gi|225010311|ref|ZP_03700783.1| ribosome-binding factor A [Flavobacteria bacterium MS024-3C]
gi|225005790|gb|EEG43740.1| ribosome-binding factor A [Flavobacteria bacterium MS024-3C]
Length = 131
Score = 98.1 bits (244), Expect = 4e-19, Method: Composition-based stats.
Identities = 25/118 (21%), Positives = 56/118 (47%), Gaps = 2/118 (1%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
+ ++R ++ ++ + V+ D + +IS+S+V ++ DL +A VY+S+ +
Sbjct: 2 EETQRQKKIAGVIQKDMADVLQRAAT-DGGLKGLLISVSKVTVTTDLSIAKVYLSIFPED 60
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRN-LRYVPELRFRYDTSLQSYWKLNALMCLPKIP 123
++ + N I+ + + RN LR +P+L F D +L ++ + P
Sbjct: 61 RAKEMLEGIQSNQPLIKHELAKRTRNQLRRMPQLLFFIDDTLAYLDGIDRSLKGENNP 118
>gi|312892434|ref|ZP_07751928.1| ribosome-binding factor A [Mucilaginibacter paludis DSM 18603]
gi|311295068|gb|EFQ72243.1| ribosome-binding factor A [Mucilaginibacter paludis DSM 18603]
Length = 125
Score = 98.1 bits (244), Expect = 4e-19, Method: Composition-based stats.
Identities = 19/123 (15%), Positives = 54/123 (43%), Gaps = 6/123 (4%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
S+R + ++ L + + +++I++V ++ DL +A V++S +
Sbjct: 1 MESKRQQKFAGVIQEDLAAIFQREGMN--FLPNTLVTITKVRVTPDLALARVFLSFFNNA 58
Query: 67 SPDRVISALNCNIKFIRGRIGRSLR-NLRYVPELRFRYDTSLQSYWKLNAL---MCLPKI 122
+ + + + IR ++G ++ +R +P+L F D + +++ + + +
Sbjct: 59 NTQLALQTIKLHASEIRYKLGSRIKDQVRIIPQLEFFVDDTSDYVERMDKIFDKIHKEEN 118
Query: 123 PVA 125
P
Sbjct: 119 PAD 121
>gi|227495150|ref|ZP_03925466.1| ribosome-binding factor A [Actinomyces coleocanis DSM 15436]
gi|226831602|gb|EEH63985.1| ribosome-binding factor A [Actinomyces coleocanis DSM 15436]
Length = 156
Score = 98.1 bits (244), Expect = 4e-19, Method: Composition-based stats.
Identities = 24/110 (21%), Positives = 52/110 (47%), Gaps = 5/110 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV-SPD 69
R +V + ++ + ++ +D + ++I++V ++ DL+ AT++ ++ +
Sbjct: 6 RQRKVADRIQQTVARLLERR-IKDPRLG--FVTITDVSVTGDLQHATIFYTVFGKASDAE 62
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
R ALN IR +G++L +R P + F D QS +L +
Sbjct: 63 RTQKALNSAKGMIRSEVGKAL-GIRLTPTIEFVADALPQSAARLEDALAR 111
>gi|296129358|ref|YP_003636608.1| ribosome-binding factor A [Cellulomonas flavigena DSM 20109]
gi|296021173|gb|ADG74409.1| ribosome-binding factor A [Cellulomonas flavigena DSM 20109]
Length = 144
Score = 98.1 bits (244), Expect = 4e-19, Method: Composition-based stats.
Identities = 25/118 (21%), Positives = 51/118 (43%), Gaps = 6/118 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-DVSPD 69
RA ++ E ++ + +I + +D + +++++V ++ DL+ A VY ++ D S +
Sbjct: 6 RARKLAERIQQVVAQMI-DTRVKDPRLG--FVTVTDVRVTGDLQHADVYYTVLGDDESRE 62
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALE 127
AL IR +G+ +R P L F D ++ L + E
Sbjct: 63 GSAKALESAKGMIRSEVGKQ-TGIRLTPTLAFHLDAVPETAAHLEEAL-SEAARRDAE 118
>gi|227538622|ref|ZP_03968671.1| ribosome binding factor A [Sphingobacterium spiritivorum ATCC
33300]
gi|227241541|gb|EEI91556.1| ribosome binding factor A [Sphingobacterium spiritivorum ATCC
33300]
Length = 123
Score = 98.1 bits (244), Expect = 4e-19, Method: Composition-based stats.
Identities = 24/113 (21%), Positives = 49/113 (43%), Gaps = 3/113 (2%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
S+R R ++ L + + + I+++ V ++ DL +A VY+S
Sbjct: 2 ATESKRQQRFAGVIQQDLAELFQRDG--NNWAPGAFITVTRVRVTPDLAIARVYLSFLNT 59
Query: 66 VSPDRVISALNCNIKFIRGRIGRSLRN-LRYVPELRFRYDTSLQSYWKLNALM 117
+ I A+ IR ++G ++N R VP+L F D + + ++ +
Sbjct: 60 KTAPEDIKAIRTKTSEIRYKLGSRIKNQARIVPQLEFFLDDTNEYVEHMDKIF 112
>gi|145348606|ref|XP_001418737.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578967|gb|ABO97030.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 171
Score = 98.1 bits (244), Expect = 4e-19, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 65/120 (54%), Gaps = 13/120 (10%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLIS-----------RDVISISEVCMSVDLRVATV 58
RR +V +++R + ++ +++ +IS + ++++V +S DL+V V
Sbjct: 8 RRVQKVQQQMRREISSMMQSDKNLRAMISPEERMGVDHMLSVMATVADVEVSNDLQVVKV 67
Query: 59 YISLPLDV-SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
Y+S+ D + I + +++R +IGR + +LR PE+RF YD S + K++AL+
Sbjct: 68 YVSILGDERGKNNAIKGMKRMEQYVRRKIGRRM-SLRLTPEIRFIYDDSFERGQKVSALL 126
>gi|56416865|ref|YP_153939.1| ribosome-binding factor A [Anaplasma marginale str. St. Maries]
gi|222475230|ref|YP_002563646.1| ribosome-binding factor A (rbfA) [Anaplasma marginale str. Florida]
gi|254995053|ref|ZP_05277243.1| ribosome-binding factor A (rbfA) [Anaplasma marginale str.
Mississippi]
gi|255003212|ref|ZP_05278176.1| ribosome-binding factor A (rbfA) [Anaplasma marginale str. Puerto
Rico]
gi|255004340|ref|ZP_05279141.1| ribosome-binding factor A (rbfA) [Anaplasma marginale str.
Virginia]
gi|61214728|sp|Q5PAJ6|RBFA_ANAMM RecName: Full=Ribosome-binding factor A
gi|56388097|gb|AAV86684.1| ribosome-binding factor A [Anaplasma marginale str. St. Maries]
gi|222419367|gb|ACM49390.1| ribosome-binding factor A (rbfA) [Anaplasma marginale str. Florida]
Length = 117
Score = 98.1 bits (244), Expect = 4e-19, Method: Composition-based stats.
Identities = 39/118 (33%), Positives = 63/118 (53%), Gaps = 6/118 (5%)
Query: 5 NPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL 64
P R+L+V ++ AL + + EF D ++SIS V +S D R ATV++++
Sbjct: 5 TPSAGLRSLKVASVLKRALAQLFIR-EFYD---LSSMLSISGVKVSEDTRNATVFVAIGD 60
Query: 65 -DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
V D V++ALN IR + R L+ LRYVP L F+ D ++ +++ +M K
Sbjct: 61 KSVDGDEVVAALNDASNSIRRAVFRYLK-LRYVPRLHFKLDVEFDNFLRISEIMATTK 117
>gi|192359933|ref|YP_001980960.1| ribosome-binding factor A [Cellvibrio japonicus Ueda107]
gi|238692444|sp|B3PI97|RBFA_CELJU RecName: Full=Ribosome-binding factor A
gi|190686098|gb|ACE83776.1| ribosome-binding factor A [Cellvibrio japonicus Ueda107]
Length = 136
Score = 98.1 bits (244), Expect = 4e-19, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 59/117 (50%), Gaps = 7/117 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
P+ R+ RV + ++ L VI E +D + +++I+ V +S D+ A VY++
Sbjct: 2 PREFTRSDRVSDAIQRLLAQVIPQ-EVRDPRLG--MVNINAVAVSRDMAFAKVYVTFVGV 58
Query: 66 VSPDRVISA---LNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ + LN F+R + R L ++R VP+L+F YD + +L++L+
Sbjct: 59 TDEPKSLEGIGILNKASGFLRSFVAREL-SMRTVPKLQFIYDKTSIRGQELSSLIDR 114
>gi|171463766|ref|YP_001797879.1| ribosome-binding factor A [Polynucleobacter necessarius subsp.
necessarius STIR1]
gi|238689065|sp|B1XV88|RBFA_POLNS RecName: Full=Ribosome-binding factor A
gi|171193304|gb|ACB44265.1| ribosome-binding factor A [Polynucleobacter necessarius subsp.
necessarius STIR1]
Length = 122
Score = 98.1 bits (244), Expect = 4e-19, Method: Composition-based stats.
Identities = 26/119 (21%), Positives = 57/119 (47%), Gaps = 8/119 (6%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
M +P R R+ ++++ L +I R S +I++ + ++ DL A V+
Sbjct: 1 MHKTSP---HRNQRLADQIQRDLAELIPREL---RSSSLGLITLQSIELTPDLAHAKVFF 54
Query: 61 SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
++ L P+ + AL ++ + + L ++ VP L F YD+S++ +++ L+
Sbjct: 55 TV-LGAEPEHALKALQEKAGYLYSLLFKRL-HIHTVPTLHFHYDSSVEHGIEMSKLIDQ 111
>gi|268316869|ref|YP_003290588.1| ribosome-binding factor A [Rhodothermus marinus DSM 4252]
gi|262334403|gb|ACY48200.1| ribosome-binding factor A [Rhodothermus marinus DSM 4252]
Length = 126
Score = 97.7 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 31/114 (27%), Positives = 56/114 (49%), Gaps = 5/114 (4%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD- 65
+S R RVG ++ L ++ EF D+L + ++++V + DL +A VY+S+
Sbjct: 2 SSSIRVQRVGSLLKRELADIL-QFEFGDQL--PPMTTVTDVQPTRDLSIAKVYVSIYGTP 58
Query: 66 VSPDRVISALNCNIKFIRGRIGRSLR-NLRYVPELRFRYDTSLQSYWKLNALMC 118
L IR + + +R LR++PELRF D +L+ ++ L+
Sbjct: 59 EQKRAAFRRLQELTPQIRAALAQRIRYQLRFMPELRFVLDETLERAQRVEELLA 112
>gi|319941972|ref|ZP_08016293.1| ribosome-binding factor A [Sutterella wadsworthensis 3_1_45B]
gi|319804625|gb|EFW01495.1| ribosome-binding factor A [Sutterella wadsworthensis 3_1_45B]
Length = 140
Score = 97.7 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 58/119 (48%), Gaps = 8/119 (6%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
MKN P RA R+GE++ L +I E +D + +++I+ ++ D A VY
Sbjct: 21 MKNVKPG---RAQRIGEQIARDLAELIPQ-EVRDPRVG--LVTITGCEVTPDYAHAKVYF 74
Query: 61 SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
++ L P + LN +R + + L ++ VP L F +D S ++++AL+
Sbjct: 75 TV-LGSDPAASAAGLNAAAGMLRSILFKRL-HIHTVPTLHFAHDQSTVRGFEMDALIKQ 131
>gi|313204741|ref|YP_004043398.1| ribosome-binding factor a [Paludibacter propionicigenes WB4]
gi|312444057|gb|ADQ80413.1| ribosome-binding factor A [Paludibacter propionicigenes WB4]
Length = 121
Score = 97.7 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 27/115 (23%), Positives = 55/115 (47%), Gaps = 4/115 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
+ R ++ ++ L + L R + +I+++ V +S DL +A ++S+
Sbjct: 1 METTRQQKISRMLQKELGEIFL---LYARELQGTLITVTAVRVSPDLGIARTHLSIFPSD 57
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRN-LRYVPELRFRYDTSLQSYWKLNALMCLP 120
V++ + + + IR +G+ +R+ LR VPEL F D SL ++ L+
Sbjct: 58 RSAAVLAKVQDDSRAIRFDLGKRVRHQLRIVPELFFHVDDSLDYLENIDNLLKSD 112
>gi|307718803|ref|YP_003874335.1| ribosome-binding factor A [Spirochaeta thermophila DSM 6192]
gi|306532528|gb|ADN02062.1| ribosome-binding factor A [Spirochaeta thermophila DSM 6192]
Length = 128
Score = 97.7 bits (243), Expect = 5e-19, Method: Composition-based stats.
Identities = 29/106 (27%), Positives = 53/106 (50%), Gaps = 3/106 (2%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP-LDVSPD 69
R R+ ++ L ++++ E +D I + SI+ V +S D A VY+S ++ +
Sbjct: 5 RLTRLAHLIQEELARLLVSGELKDPRIHCSL-SINHVKLSKDFSFAKVYVSSYDPNLPVE 63
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNA 115
+ ALN FIR + L R VP RF D+S++ ++++
Sbjct: 64 EGVEALNHAAGFIRTVFAKKLTT-RTVPRFRFLPDSSIKEGFEISK 108
>gi|254430062|ref|ZP_05043769.1| ribosome-binding factor A [Alcanivorax sp. DG881]
gi|196196231|gb|EDX91190.1| ribosome-binding factor A [Alcanivorax sp. DG881]
Length = 137
Score = 97.7 bits (243), Expect = 5e-19, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 60/122 (49%), Gaps = 6/122 (4%)
Query: 2 KNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS 61
+++ P+ R R+ ++++ L +L E +D ++ + +I +V +S DL A VY +
Sbjct: 3 RHRRPQGFNRTDRIADQIQRELSR-LLQFEMKDPRVN--LATIQDVTVSRDLSYAEVYFT 59
Query: 62 LPLD--VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
L + AL F+R + +SL N R P+LRF YD + + L+ L+
Sbjct: 60 LLGQGEEAGVEAEEALVKASGFLRSSLAKSL-NTRTTPKLRFHYDMTPERAAHLSQLIDD 118
Query: 120 PK 121
+
Sbjct: 119 AR 120
>gi|271963650|ref|YP_003337846.1| ribosome-binding factor A-like protein [Streptosporangium roseum
DSM 43021]
gi|270506825|gb|ACZ85103.1| Ribosome-binding factor A-like protein [Streptosporangium roseum
DSM 43021]
Length = 160
Score = 97.7 bits (243), Expect = 5e-19, Method: Composition-based stats.
Identities = 25/118 (21%), Positives = 51/118 (43%), Gaps = 6/118 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV-SPD 69
RA ++ + ++ + ++ +D + +++++ ++ DL ATV+ ++
Sbjct: 5 RARKIADRIQQVVAEMLERR-IKDPRLG--FVTVTDTRITNDLSEATVFYTVFGSEAERA 61
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALE 127
+AL IR +GR LR+ P L F +D S L+ L+ K E
Sbjct: 62 DSATALESAKGLIRSEVGRQ-TGLRHTPTLTFTHDPLPDSARHLDGLLAEAK-ARDAE 117
>gi|229495620|ref|ZP_04389353.1| ribosome-binding factor A [Porphyromonas endodontalis ATCC 35406]
gi|229317603|gb|EEN83503.1| ribosome-binding factor A [Porphyromonas endodontalis ATCC 35406]
Length = 111
Score = 97.3 bits (242), Expect = 5e-19, Method: Composition-based stats.
Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 4/113 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
N RR ++ V+ AL + Q + + ++S++ V S DL VY+S+
Sbjct: 1 MNDRRISKIARLVQKALGEIFQR---QTQAMPGVIVSVTRVSPSPDLSFCKVYLSIFPSE 57
Query: 67 SPDRVISALNCNIKFIRGRIGRSLR-NLRYVPELRFRYDTSLQSYWKLNALMC 118
+ +I+A N +R +G L+ LR +PEL F D +L ++ L+
Sbjct: 58 RAEEIITATQRNAAQVRYALGVELKSQLRVIPELVFIVDDTLDYLDNIDRLLA 110
>gi|213962361|ref|ZP_03390624.1| ribosome-binding factor A [Capnocytophaga sputigena Capno]
gi|213955027|gb|EEB66346.1| ribosome-binding factor A [Capnocytophaga sputigena Capno]
Length = 130
Score = 97.3 bits (242), Expect = 5e-19, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 57/120 (47%), Gaps = 2/120 (1%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
+ R ++ ++ L V+ + +D ++S+++V ++VDL VA VY+S+ +
Sbjct: 1 MENNRQKKIAGIIQEELAKVLQQS-IRDAGQQNLLVSVTKVNVTVDLSVAKVYLSVFPEA 59
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRN-LRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
V+ + N I+ + + ++ R +PEL F D SLQ + + + P+
Sbjct: 60 KAAEVLKGVTSNAPLIKHELSQITKHQFRRMPELFFYIDDSLQYIEGIEQSLKEEENPIE 119
>gi|302811611|ref|XP_002987494.1| hypothetical protein SELMODRAFT_48536 [Selaginella moellendorffii]
gi|302822285|ref|XP_002992801.1| hypothetical protein SELMODRAFT_48535 [Selaginella moellendorffii]
gi|300139349|gb|EFJ06091.1| hypothetical protein SELMODRAFT_48535 [Selaginella moellendorffii]
gi|300144648|gb|EFJ11330.1| hypothetical protein SELMODRAFT_48536 [Selaginella moellendorffii]
Length = 162
Score = 97.3 bits (242), Expect = 5e-19, Method: Composition-based stats.
Identities = 33/124 (26%), Positives = 61/124 (49%), Gaps = 13/124 (10%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQ-----------DRLISRDVISISEVCMSVDLRVATV 58
RR V +++R + +++ ++ L V +IS+V +S DL+VA +
Sbjct: 6 RRIKMVAQQIRREVGEMLIKDKVLMQAILPEAALGADLYLSSVTTISDVEISRDLQVAKI 65
Query: 59 YISLPLDVSPDRV-ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
YIS+ D + I L K++R ++G+ ++ LR PE+RF D S + ++ L+
Sbjct: 66 YISVFGDERGKEIAIEGLKSREKYVRMQLGKRMK-LRLTPEVRFIADDSFERGARVIKLL 124
Query: 118 CLPK 121
K
Sbjct: 125 DRLK 128
>gi|148273332|ref|YP_001222893.1| ribosome-binding factor A [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
gi|166218430|sp|A5CSZ3|RBFA_CLAM3 RecName: Full=Ribosome-binding factor A
gi|147831262|emb|CAN02218.1| rbfA [Clavibacter michiganensis subsp. michiganensis NCPPB 382]
Length = 166
Score = 97.3 bits (242), Expect = 6e-19, Method: Composition-based stats.
Identities = 19/118 (16%), Positives = 54/118 (45%), Gaps = 6/118 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-DVSPD 69
RA ++ + ++ + + +D + +++++V ++ DL+ A+++ ++ D
Sbjct: 6 RARKMADRIKEIVARKLDRG-IKDPRLG--FVTVTDVRVTGDLQHASIFYTVYGTDEERA 62
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALE 127
+AL +R +G+++ R P L F D ++ ++AL+ + +
Sbjct: 63 DTAAALKSATGMLRSEVGKNITA-RLTPSLEFILDGVPENAAAIDALLEEAR-RRDAD 118
>gi|296135769|ref|YP_003643011.1| ribosome-binding factor A [Thiomonas intermedia K12]
gi|294339932|emb|CAZ88295.1| ribosome-binding factor A [Thiomonas sp. 3As]
gi|295795891|gb|ADG30681.1| ribosome-binding factor A [Thiomonas intermedia K12]
Length = 120
Score = 97.3 bits (242), Expect = 6e-19, Method: Composition-based stats.
Identities = 25/127 (19%), Positives = 58/127 (45%), Gaps = 8/127 (6%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
MK P R R+ ++++ L +I E ++ + ++++++V ++ D A VY
Sbjct: 1 MKRATP---NRTQRIADQIQRDLAELIQR-ELRNPQLG--LVTLTDVQLTPDYAHAKVYF 54
Query: 61 SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
S+ + PD L+ ++ + + L + VP L F +D + + +++ L+
Sbjct: 55 SV-IGAEPDTARQILSDKAGYLHSLLFKRL-QIHTVPTLHFLFDPTTEKAAEMDGLIRQA 112
Query: 121 KIPVALE 127
A +
Sbjct: 113 LAQQAKD 119
>gi|315185932|gb|EFU19696.1| ribosome-binding factor A [Spirochaeta thermophila DSM 6578]
Length = 128
Score = 97.3 bits (242), Expect = 6e-19, Method: Composition-based stats.
Identities = 29/106 (27%), Positives = 52/106 (49%), Gaps = 3/106 (2%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP-LDVSPD 69
R R+ ++ L ++++ E +D I + SI+ V +S D A VY+S + +
Sbjct: 5 RLTRLAHLIQEELARLLVSGELKDPRIHCSL-SINHVKLSKDFSFAKVYVSSYDPSLPVE 63
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNA 115
+ ALN FIR + L R VP RF D+S++ ++++
Sbjct: 64 EGVEALNHAAGFIRTVFAKKLTT-RTVPRFRFLPDSSIKEGFEISK 108
>gi|256819620|ref|YP_003140899.1| ribosome-binding factor A [Capnocytophaga ochracea DSM 7271]
gi|315224986|ref|ZP_07866805.1| ribosome-binding factor A [Capnocytophaga ochracea F0287]
gi|256581203|gb|ACU92338.1| ribosome-binding factor A [Capnocytophaga ochracea DSM 7271]
gi|314945099|gb|EFS97129.1| ribosome-binding factor A [Capnocytophaga ochracea F0287]
Length = 130
Score = 97.3 bits (242), Expect = 6e-19, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 57/120 (47%), Gaps = 2/120 (1%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
+ R ++ ++ L V+ + +D +IS+++V ++VDL VA VY+S+ +
Sbjct: 1 MENNRQKKIAGIIQEELAKVLQQS-IRDAGQQNLLISVTKVNVTVDLSVAKVYLSVFPEA 59
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRN-LRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
V+ + N I+ + + ++ R +PEL F D SLQ + + + P+
Sbjct: 60 KAAEVLKGVTSNAPLIKHELSQITKHQFRRMPELYFYIDDSLQYIEGIEQSLKEEENPIE 119
>gi|320103079|ref|YP_004178670.1| ribosome-binding factor A [Isosphaera pallida ATCC 43644]
gi|319750361|gb|ADV62121.1| ribosome-binding factor A [Isosphaera pallida ATCC 43644]
Length = 180
Score = 97.3 bits (242), Expect = 7e-19, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 5/116 (4%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
S R L+V E +R + IL E D I +++ V + DLR A V++S+
Sbjct: 1 MPSHRPLKVAEAIREVVAHSILF-ELSDPRIKN--VTVLRVEVPGDLRTAKVFVSVMGPP 57
Query: 67 SPDRV-ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+ + L F++ ++ L ++ VP L F D SL+ ++ AL +
Sbjct: 58 KTQSLSLRGLQSARGFLQSKVAARL-QMKTVPILSFELDDSLRKAQEMAALFARAE 112
>gi|170782215|ref|YP_001710548.1| ribosome-binding factor A [Clavibacter michiganensis subsp.
sepedonicus]
gi|189039532|sp|B0RDY8|RBFA_CLAMS RecName: Full=Ribosome-binding factor A
gi|169156784|emb|CAQ01947.1| ribosome-binding factor A [Clavibacter michiganensis subsp.
sepedonicus]
Length = 170
Score = 97.3 bits (242), Expect = 7e-19, Method: Composition-based stats.
Identities = 19/118 (16%), Positives = 54/118 (45%), Gaps = 6/118 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-DVSPD 69
RA ++ + ++ + + +D + +++++V ++ DL+ A+++ ++ D
Sbjct: 6 RARKMADRIKEIVARKLDRG-IKDPRLG--FVTVTDVRVTGDLQHASIFYTVYGTDEERA 62
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALE 127
+AL +R +G+++ R P L F D ++ ++AL+ + +
Sbjct: 63 DTAAALKSATGMLRSEVGKNITA-RLTPSLEFILDGVPENAAAIDALLEEAR-RRDAD 118
>gi|110833191|ref|YP_692050.1| ribosome-binding factor A [Alcanivorax borkumensis SK2]
gi|122959683|sp|Q0VSS0|RBFA_ALCBS RecName: Full=Ribosome-binding factor A
gi|110646302|emb|CAL15778.1| ribosome-binding factor A [Alcanivorax borkumensis SK2]
Length = 137
Score = 97.3 bits (242), Expect = 7e-19, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 58/118 (49%), Gaps = 6/118 (5%)
Query: 2 KNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS 61
+++ P+ R RV ++++ L +L E +D ++ + +I +V +S DL A VY +
Sbjct: 3 RHRRPQGFNRTDRVADQIQRELSR-LLQFEMKDPRVN--LATIQDVTVSRDLSYAEVYFT 59
Query: 62 LP--LDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
L + + L F+R + + L N R P+LRF YD + + L+ L+
Sbjct: 60 LLGQGEEAGAEAEEVLTKASGFLRSSLAQGL-NTRTTPKLRFHYDMTPERAAHLSQLI 116
>gi|283769344|ref|ZP_06342243.1| ribosome-binding factor A [Bulleidia extructa W1219]
gi|283104001|gb|EFC05385.1| ribosome-binding factor A [Bulleidia extructa W1219]
Length = 117
Score = 96.9 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 26/112 (23%), Positives = 53/112 (47%), Gaps = 5/112 (4%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS 67
N+ + R+ +R + +I N +D + ++I++V +S D A VY+
Sbjct: 3 NTIKQKRLEGIIRKNISDIIQFN-LKDPDVG--FVTITDVAVSNDHSYAHVYVVFLGKKE 59
Query: 68 PDRV-ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ + ALN FIR + + L ++R PEL F+ D + + ++ ++
Sbjct: 60 RAQAGLKALNRAKGFIRRELSQRL-DIRRTPELIFQMDQAEERGRHIDDIIR 110
>gi|320533278|ref|ZP_08033980.1| ribosome-binding factor A [Actinomyces sp. oral taxon 171 str.
F0337]
gi|320134504|gb|EFW26750.1| ribosome-binding factor A [Actinomyces sp. oral taxon 171 str.
F0337]
Length = 162
Score = 96.9 bits (241), Expect = 8e-19, Method: Composition-based stats.
Identities = 24/95 (25%), Positives = 46/95 (48%), Gaps = 5/95 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDVSPD 69
RA +V + V + +L +D + +++++V ++ DL+ ATV+ ++ D
Sbjct: 6 RARKVADRVHETVAR-LLQGRIKDPRLG--FVTVTDVRVTGDLQQATVFYTVYGSDEERG 62
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYD 104
AL IR +G++L +R P L F+ D
Sbjct: 63 ETAKALRSAKGLIRSEVGKAL-GIRLTPSLSFQLD 96
>gi|75763909|ref|ZP_00743546.1| Ribosome-binding factor A [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|74488605|gb|EAO52184.1| Ribosome-binding factor A [Bacillus thuringiensis serovar
israelensis ATCC 35646]
Length = 84
Score = 96.9 bits (241), Expect = 8e-19, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
RA RVGE+++ L +I + +D I +++++V +S DL++ VYIS D
Sbjct: 4 RANRVGEQMKKELGDIISR-KIKDPRIG--FVTVTDVQVSGDLQIGKVYISGLGDEEQKE 60
Query: 71 V-ISALNCNIKFIRGRIG 87
+ L FIR IG
Sbjct: 61 ITFKGLAKAKGFIRSEIG 78
>gi|77413953|ref|ZP_00790127.1| ribosome-binding factor A [Streptococcus agalactiae 515]
gi|77159989|gb|EAO71126.1| ribosome-binding factor A [Streptococcus agalactiae 515]
Length = 116
Score = 96.9 bits (241), Expect = 8e-19, Method: Composition-based stats.
Identities = 24/113 (21%), Positives = 54/113 (47%), Gaps = 6/113 (5%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP--LDV 66
+ R RVG E++ + ++ D + ++I++V M DL +A V+ ++ L
Sbjct: 3 NHRIDRVGMEIKREVNEILRFR-VNDPRVQD--VTITDVQMLGDLSMAKVFYTIHSTLAS 59
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ L I+ +G++L + +P+L+F D S++ K++ ++
Sbjct: 60 DNQKAQIGLEKATGTIKRELGKNL-TMYKIPDLQFVKDESIEYGNKIDEMLRN 111
>gi|225012557|ref|ZP_03702993.1| ribosome-binding factor A [Flavobacteria bacterium MS024-2A]
gi|225003534|gb|EEG41508.1| ribosome-binding factor A [Flavobacteria bacterium MS024-2A]
Length = 133
Score = 96.6 bits (240), Expect = 9e-19, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 57/118 (48%), Gaps = 2/118 (1%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
+ + R ++ + ++ + +L + +S +IS+++V ++ DL A +Y+S+
Sbjct: 4 QETPRQKKINKVLQQEVAT-LLQGAIRQENVSNLMISVTKVHVTSDLTSAKIYLSIFPTQ 62
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRN-LRYVPELRFRYDTSLQSYWKLNALMCLPKIP 123
R L N +R + + ++N LR VP+L+F D SL ++ + K P
Sbjct: 63 DAQRHFEVLKENKFQLRHDLSQRMKNQLRRVPDLQFFLDDSLDYIESIDNELKKGKNP 120
>gi|254787148|ref|YP_003074577.1| ribosome-binding factor A [Teredinibacter turnerae T7901]
gi|259552117|sp|C5BPV8|RBFA_TERTT RecName: Full=Ribosome-binding factor A
gi|237685652|gb|ACR12916.1| ribosome-binding factor A [Teredinibacter turnerae T7901]
Length = 132
Score = 96.6 bits (240), Expect = 9e-19, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 56/117 (47%), Gaps = 7/117 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
PK R+ RV + ++ +L I E QD + +++I+ V +S DL +A V+++
Sbjct: 2 PKEFNRSDRVADAMQRSLANAI-RMEIQDPRVG--MVNINAVEVSRDLALAKVFVTFIGV 58
Query: 66 VSP---DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ +S LN F+R + + L +R P + F YD + L++L+
Sbjct: 59 DDERAIETSVSILNKAAGFLRNVVSKDL-TIRSTPRIHFYYDKTAVRGQVLSSLIDR 114
>gi|291279904|ref|YP_003496739.1| ribosome-binding factor A [Deferribacter desulfuricans SSM1]
gi|290754606|dbj|BAI80983.1| ribosome-binding factor A [Deferribacter desulfuricans SSM1]
Length = 115
Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 35/108 (32%), Positives = 59/108 (54%), Gaps = 5/108 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI-SLPLDVSPD 69
RA RV E +R L +I+ E +D L+ +I+ V +S DL +A +Y S L++ +
Sbjct: 6 RARRVSELIREELSKLIIY-EVKDPLVKSVIIT--AVKVSNDLSLAKIYFRSYDLEMDLN 62
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
V+ LN + F+R I +SLR L+ +P L F D + K++ ++
Sbjct: 63 DVLKGLNRSKGFLRENIKKSLR-LKKIPSLEFYIDDVVDEGLKIDNII 109
>gi|328948920|ref|YP_004366257.1| ribosome-binding factor A [Treponema succinifaciens DSM 2489]
gi|328449244|gb|AEB14960.1| Ribosome-binding factor A [Treponema succinifaciens DSM 2489]
Length = 134
Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 29/104 (27%), Positives = 55/104 (52%), Gaps = 3/104 (2%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP-D 69
R R+G +R + +I+ +E +D + + ++I+ V + DL A VY+S LD + +
Sbjct: 5 RMDRLGNLLREEIATLIMRHEVKDPRV-NEFLTINRVEVVKDLSCAKVYVSSFLDDASVE 63
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKL 113
R + L FI+ I + + R+ P+L F D S++ +K+
Sbjct: 64 RGVKGLQSAAGFIQSTIAKKVSIYRF-PKLTFVADFSMKEGYKM 106
>gi|301063527|ref|ZP_07204059.1| ribosome-binding factor A [delta proteobacterium NaphS2]
gi|300442466|gb|EFK06699.1| ribosome-binding factor A [delta proteobacterium NaphS2]
Length = 116
Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 28/111 (25%), Positives = 61/111 (54%), Gaps = 5/111 (4%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS 67
+R+ RVG+ + + ++L + +D + ++++ + +S DL++A +Y S+ D +
Sbjct: 3 PGKRSARVGDVILKEVALLLL-EKVRDPRVQG--VTLTGIRLSDDLKLARIYYSVMGDET 59
Query: 68 P-DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ S L+ F++ IGR +LRY+P++ F YD SL++ + +
Sbjct: 60 RILKAQSGLDSAKGFVKREIGRR-ASLRYIPDITFVYDPSLETGDHMERIF 109
>gi|330999165|ref|ZP_08322884.1| ribosome-binding factor A [Parasutterella excrementihominis YIT
11859]
gi|329575365|gb|EGG56909.1| ribosome-binding factor A [Parasutterella excrementihominis YIT
11859]
Length = 124
Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 26/121 (21%), Positives = 60/121 (49%), Gaps = 8/121 (6%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
+K P RA R+ ++++ + +I E + +++++ ++ D AT+Y
Sbjct: 2 IKPTKPG---RANRIADQIQRDVAELI-QKEVSNPKTG--LVTLTGCEITPDYAHATIYF 55
Query: 61 SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
+ + +P+ ALN + RI + L+ + VP+L F YD S++ ++++ L+
Sbjct: 56 T-SIGSTPEEATEALNSAAPMLHSRIFKLLK-IHTVPQLHFVYDKSVERGFEMDQLIRQA 113
Query: 121 K 121
+
Sbjct: 114 R 114
>gi|149280521|ref|ZP_01886638.1| ribosome-binding factor A [Pedobacter sp. BAL39]
gi|149228703|gb|EDM34105.1| ribosome-binding factor A [Pedobacter sp. BAL39]
Length = 129
Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 27/123 (21%), Positives = 54/123 (43%), Gaps = 4/123 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
S+R + ++ L + + +++I++V +S DL VA VY+S
Sbjct: 4 MESKRQQKFAGVLQEELAAIFQREGA--SYLPNTLVTITKVRVSPDLAVAKVYLSFLNTN 61
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRN-LRYVPELRFRYDTSLQSYWKLNALMCL-PKIPV 124
+ ++ +N + IR ++G +R+ R VP L F D + Q ++ L +
Sbjct: 62 NTTLSVAEVNAHAGEIRYKLGARIRHQARVVPTLTFFVDDTNQYVEHMDKLFDKISRERK 121
Query: 125 ALE 127
+E
Sbjct: 122 DIE 124
>gi|76788091|ref|YP_329102.1| ribosome-binding factor A [Streptococcus agalactiae A909]
gi|76798050|ref|ZP_00780307.1| ribosome-binding factor A [Streptococcus agalactiae 18RS21]
gi|77406442|ref|ZP_00783499.1| ribosome-binding factor A [Streptococcus agalactiae H36B]
gi|77408764|ref|ZP_00785494.1| ribosome-binding factor A [Streptococcus agalactiae COH1]
gi|77411635|ref|ZP_00787975.1| ribosome-binding factor A [Streptococcus agalactiae CJB111]
gi|44888538|sp|Q9K333|RBFA_STRAG RecName: Full=Ribosome-binding factor A
gi|54039028|sp|P65970|RBFA_STRA5 RecName: Full=Ribosome-binding factor A
gi|54041788|sp|P65969|RBFA_STRA3 RecName: Full=Ribosome-binding factor A
gi|123602371|sp|Q3K301|RBFA_STRA1 RecName: Full=Ribosome-binding factor A
gi|76563148|gb|ABA45732.1| ribosome-binding factor A [Streptococcus agalactiae A909]
gi|76586609|gb|EAO63110.1| ribosome-binding factor A [Streptococcus agalactiae 18RS21]
gi|77162279|gb|EAO73250.1| ribosome-binding factor A [Streptococcus agalactiae CJB111]
gi|77172609|gb|EAO75748.1| ribosome-binding factor A [Streptococcus agalactiae COH1]
gi|77174944|gb|EAO77756.1| ribosome-binding factor A [Streptococcus agalactiae H36B]
Length = 116
Score = 96.6 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 24/113 (21%), Positives = 54/113 (47%), Gaps = 6/113 (5%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP--LDV 66
+ R RVG E++ + ++ D + ++I++V M DL +A V+ ++ L
Sbjct: 3 NHRIDRVGMEIKREVNEIL-RLRVNDPRVQD--VTITDVQMLGDLSMAKVFYTIHSTLAS 59
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ L I+ +G++L + +P+L+F D S++ K++ ++
Sbjct: 60 DNQKAQIGLEKATGTIKRELGKNL-TMYKIPDLQFVKDESIEYGNKIDEMLRN 111
>gi|88812959|ref|ZP_01128202.1| ribosome-binding factor A [Nitrococcus mobilis Nb-231]
gi|88789737|gb|EAR20861.1| ribosome-binding factor A [Nitrococcus mobilis Nb-231]
Length = 114
Score = 96.2 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 32/105 (30%), Positives = 58/105 (55%), Gaps = 6/105 (5%)
Query: 15 VGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL--DVSPDRVI 72
+ E+++ L +I E D ++ + ++SEV +S D+ A V ++ + +
Sbjct: 1 MSEQIQRELAQLI-RRELSDPRVA--LATVSEVRLSRDMAYADVLVTRLGAQREESQQAV 57
Query: 73 SALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ALN + +RG +G+SLR LR VP LRF YD S + +++ L+
Sbjct: 58 AALNHAARHLRGLLGQSLR-LRAVPALRFHYDDSFERSARVSHLI 101
>gi|32490974|ref|NP_871228.1| hypothetical protein WGLp225 [Wigglesworthia glossinidia
endosymbiont of Glossina brevipalpis]
gi|30173256|sp|Q8D2X7|RBFA_WIGBR RecName: Full=Ribosome-binding factor A
gi|25166180|dbj|BAC24371.1| rbfA [Wigglesworthia glossinidia endosymbiont of Glossina
brevipalpis]
Length = 125
Score = 96.2 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 58/122 (47%), Gaps = 7/122 (5%)
Query: 5 NPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL 64
+ + + R ++ +E++ + +IL + D I ++S V +S D A ++++
Sbjct: 2 HSRENNRKFKISKEIQRKIA-LILQQKINDPRIGIS--TVSGVDLSSDFSHAKIFVTFLN 58
Query: 65 DVSPDRVISA---LNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+ ++ S LN FIR + +++R LR +P+L F YD SL ++ L
Sbjct: 59 KNTKQQIKSGLFILNKASFFIRKILNKTMR-LRIIPKLTFIYDYSLIKGRNIDDLFNNNI 117
Query: 122 IP 123
+
Sbjct: 118 VK 119
>gi|303256977|ref|ZP_07342991.1| ribosome-binding factor A [Burkholderiales bacterium 1_1_47]
gi|302860468|gb|EFL83545.1| ribosome-binding factor A [Burkholderiales bacterium 1_1_47]
Length = 124
Score = 96.2 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 27/121 (22%), Positives = 60/121 (49%), Gaps = 8/121 (6%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
+K P RA R+ ++++ + +I E + +I+++ ++ D AT+Y
Sbjct: 2 IKPTKPG---RANRIADQIQRDVAELI-QKEVSNPKTG--LITLTGCEITPDYAHATIYF 55
Query: 61 SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
+ + +P+ ALN + RI + L+ + VP+L F YD S++ ++++ L+
Sbjct: 56 T-SIGSTPEEATEALNSAAPMLHSRIFKLLK-IHTVPQLHFVYDKSVERGFEMDQLIRQA 113
Query: 121 K 121
+
Sbjct: 114 R 114
>gi|283850799|ref|ZP_06368085.1| ribosome-binding factor A [Desulfovibrio sp. FW1012B]
gi|283573722|gb|EFC21696.1| ribosome-binding factor A [Desulfovibrio sp. FW1012B]
Length = 111
Score = 96.2 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 30/103 (29%), Positives = 56/103 (54%), Gaps = 5/103 (4%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS 67
SRR+ ++ +++ + +L + QD + +++IS V ++ D+ +A VY +L D +
Sbjct: 5 ESRRSTKLADQIAREMATALL-EDVQDPRLE--LVTISGVALNADMSIARVYYTLSGDEA 61
Query: 68 P-DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQS 109
L F+R +G+ LR +++VPELRF DT L+
Sbjct: 62 RMAAAAKGLEQAKGFLRTLLGQRLR-MKFVPELRFARDTYLED 103
>gi|256830183|ref|YP_003158911.1| ribosome-binding factor A [Desulfomicrobium baculatum DSM 4028]
gi|256579359|gb|ACU90495.1| ribosome-binding factor A [Desulfomicrobium baculatum DSM 4028]
Length = 114
Score = 96.2 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 30/104 (28%), Positives = 61/104 (58%), Gaps = 5/104 (4%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
NSRRA+++G+++ L +++ E +D ++ +++I+ V ++ D +A V +
Sbjct: 4 SNSRRAIQMGDQIMQVLASLLIQ-EVEDPTLA--LVTITGVRLNRDFSIAEVLYTHLRGR 60
Query: 67 SPD-RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQS 109
+ + + AL F+R R+ + L NLR +P+LRF++DT L+
Sbjct: 61 AAEPEITKALYHAKGFLRSRLSKEL-NLRGIPDLRFQWDTFLED 103
>gi|295136509|ref|YP_003587185.1| ribosome-binding factor A [Zunongwangia profunda SM-A87]
gi|294984524|gb|ADF54989.1| ribosome-binding factor A [Zunongwangia profunda SM-A87]
Length = 130
Score = 96.2 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 59/118 (50%), Gaps = 2/118 (1%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
+ R ++G ++ L ++ NN +D I+ +IS+S+V ++ DL +A Y+S+
Sbjct: 1 METNRQKKIGGVLQKDLAEILNNN-LRDAGINGILISVSKVKVTTDLSIAKAYLSVFPQK 59
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRN-LRYVPELRFRYDTSLQSYWKLNALMCLPKIP 123
+++ LN I+ ++ +N LR +P+L F D SL+ + M + P
Sbjct: 60 HAGDILTELNEVKSKIKHQMALRTKNQLRKMPDLSFFIDDSLEYIENIEKSMKGDENP 117
>gi|76788809|ref|YP_327895.1| ribosome-binding factor A [Chlamydia trachomatis A/HAR-13]
gi|237802527|ref|YP_002887721.1| ribosome-binding factor A [Chlamydia trachomatis B/Jali20/OT]
gi|237804444|ref|YP_002888598.1| ribosome-binding factor A [Chlamydia trachomatis B/TZ1A828/OT]
gi|123607168|sp|Q3KMS5|RBFA_CHLTA RecName: Full=Ribosome-binding factor A
gi|76167339|gb|AAX50347.1| ribosome-binding factor A [Chlamydia trachomatis A/HAR-13]
gi|231272744|emb|CAX09648.1| ribosome-binding factor A [Chlamydia trachomatis B/TZ1A828/OT]
gi|231273761|emb|CAX10542.1| ribosome-binding factor A [Chlamydia trachomatis B/Jali20/OT]
Length = 123
Score = 96.2 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 33/111 (29%), Positives = 58/111 (52%), Gaps = 3/111 (2%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDV 66
+RR +V +R A+ VIL + + IS I+I+ V +S DL+ A VY+S +P +
Sbjct: 3 ENRRMKKVNAMLREAIAKVILK-DVKHPKISNRWITITRVSLSRDLQSACVYVSIMPHEN 61
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
S + ++AL + FI + + L L+Y P+L F + + +L+
Sbjct: 62 SQEETLAALKASAGFIAFQASKDL-VLKYFPDLNFYLEDIFSPQDHIESLL 111
>gi|309809696|ref|ZP_07703551.1| ribosome-binding factor A [Lactobacillus iners SPIN 2503V10-D]
gi|308169976|gb|EFO72014.1| ribosome-binding factor A [Lactobacillus iners SPIN 2503V10-D]
Length = 119
Score = 95.8 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 50/118 (42%), Gaps = 6/118 (5%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS-- 67
R RV E+ L ++ E D + ISI+ V + D AT+Y SL D S
Sbjct: 3 HRIGRVEGEILRELTKIL-RKEISDPRLRE--ISITAVECTNDFSYATIYYSLLTDNSVR 59
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
+ V L +R + +L L VPEL F+ D S+ K++ L+ +
Sbjct: 60 EEEVSQGLEKAKGLMRHLLSNNL-TLFKVPELIFKRDNSVAYGSKIDQLIKQVQEEQD 116
>gi|332879858|ref|ZP_08447547.1| ribosome-binding factor A [Capnocytophaga sp. oral taxon 329 str.
F0087]
gi|332682235|gb|EGJ55143.1| ribosome-binding factor A [Capnocytophaga sp. oral taxon 329 str.
F0087]
Length = 130
Score = 95.8 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 57/120 (47%), Gaps = 2/120 (1%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
+ R ++ ++ L V+ + +D ++S+++V +++DL VA VY+S+ +
Sbjct: 1 MENNRQKKIAGIIQEELAKVLQQS-IRDAGQQNLLVSVTKVTVTIDLSVAKVYLSVFPEA 59
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRN-LRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
V+ + N I+ + + ++ R +PEL F D SLQ + + + P+
Sbjct: 60 KAAEVLKGVTSNSPLIKHELSQITKHQFRRMPELLFYIDDSLQYIEGIEQSLKEEENPIE 119
>gi|113868280|ref|YP_726769.1| ribosome-binding factor A [Ralstonia eutropha H16]
gi|123032888|sp|Q0K9C0|RBFA_RALEH RecName: Full=Ribosome-binding factor A
gi|113527056|emb|CAJ93401.1| Ribosome-binding factor A [Ralstonia eutropha H16]
Length = 122
Score = 95.8 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 59/118 (50%), Gaps = 6/118 (5%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
M K +S R LR+ ++++ L +I E +D + ++++ V ++ D A VY
Sbjct: 1 MAKKGSISS-RNLRISDQIQKDLAEMIQR-ELRDPRLG--LVTLQSVALTPDYAHAKVYF 56
Query: 61 SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
++ L + LN ++ + + L ++ VP LRF +DTS++ +++ L+
Sbjct: 57 TV-LGAEAAEAEAILNEKAGYLHSLLYKRL-HIHTVPTLRFFHDTSVEHAIEMSKLIN 112
>gi|332670046|ref|YP_004453054.1| ribosome-binding factor A [Cellulomonas fimi ATCC 484]
gi|332339084|gb|AEE45667.1| ribosome-binding factor A [Cellulomonas fimi ATCC 484]
Length = 150
Score = 95.8 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 22/108 (20%), Positives = 50/108 (46%), Gaps = 5/108 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
RA ++ E ++ + ++ + +D + +++++V ++ DL+ A V+ ++ D
Sbjct: 6 RARKLAERIQQVVAQML-DTRIKDPRLG--FVTVTDVRVTGDLQHADVFYTVYGDDEARE 62
Query: 71 -VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
AL IR +G+ +R P L F D ++ L+A +
Sbjct: 63 GSAKALESAKGIIRSEVGKQ-TGIRLTPTLAFHLDAVPETAAHLDAAL 109
>gi|72161184|ref|YP_288841.1| ribosome-binding factor A [Thermobifida fusca YX]
gi|123629956|sp|Q47RU9|RBFA_THEFY RecName: Full=Ribosome-binding factor A
gi|71914916|gb|AAZ54818.1| ribosome-binding factor A [Thermobifida fusca YX]
Length = 151
Score = 95.8 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 24/112 (21%), Positives = 50/112 (44%), Gaps = 5/112 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-DVSPD 69
RA ++ + ++ + ++ +D + +++++ ++ DLR ATVY ++ D
Sbjct: 6 RASKLADRIQRIVAEMLERR-IKDPRLG--FVTVTDARLTNDLRDATVYYTVFGSDAEKA 62
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+AL IR +GR LR+ P + F D + + L+ K
Sbjct: 63 ATAAALESAKGLIRSEVGRR-TGLRHTPTITFVIDEVPDNARHIEELLAKAK 113
>gi|309804402|ref|ZP_07698476.1| ribosome-binding factor A [Lactobacillus iners LactinV 11V1-d]
gi|309804438|ref|ZP_07698506.1| ribosome-binding factor A [Lactobacillus iners LactinV 09V1-c]
gi|309807185|ref|ZP_07701159.1| ribosome-binding factor A [Lactobacillus iners LactinV 03V1-b]
gi|309808380|ref|ZP_07702281.1| ribosome-binding factor A [Lactobacillus iners LactinV 01V1-a]
gi|312873345|ref|ZP_07733398.1| ribosome-binding factor A [Lactobacillus iners LEAF 2052A-d]
gi|315653437|ref|ZP_07906359.1| ribosome-binding factor A [Lactobacillus iners ATCC 55195]
gi|325912546|ref|ZP_08174933.1| ribosome-binding factor A [Lactobacillus iners UPII 60-B]
gi|329919871|ref|ZP_08276809.1| ribosome-binding factor A [Lactobacillus iners SPIN 1401G]
gi|308163517|gb|EFO65790.1| ribosome-binding factor A [Lactobacillus iners LactinV 11V1-d]
gi|308166251|gb|EFO68466.1| ribosome-binding factor A [Lactobacillus iners LactinV 09V1-c]
gi|308166406|gb|EFO68611.1| ribosome-binding factor A [Lactobacillus iners LactinV 03V1-b]
gi|308168365|gb|EFO70482.1| ribosome-binding factor A [Lactobacillus iners LactinV 01V1-a]
gi|311091135|gb|EFQ49526.1| ribosome-binding factor A [Lactobacillus iners LEAF 2052A-d]
gi|315489362|gb|EFU79002.1| ribosome-binding factor A [Lactobacillus iners ATCC 55195]
gi|325478155|gb|EGC81280.1| ribosome-binding factor A [Lactobacillus iners UPII 60-B]
gi|328936961|gb|EGG33391.1| ribosome-binding factor A [Lactobacillus iners SPIN 1401G]
Length = 118
Score = 95.4 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 33/112 (29%), Positives = 49/112 (43%), Gaps = 6/112 (5%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS-- 67
R RV E+ L ++ E D + ISI+ V + D AT+Y SL D S
Sbjct: 3 HRIGRVEGEILRELTKIL-RKEISDPRLRE--ISITAVECTNDFSYATIYYSLLTDNSVR 59
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ V L +R + +L L VPEL F+ D S+ K++ L+
Sbjct: 60 EEEVSQGLEKAKGLMRHLLSNNL-TLFKVPELIFKRDNSVAYGSKIDQLIKQ 110
>gi|313886175|ref|ZP_07819905.1| ribosome-binding factor A [Porphyromonas asaccharolytica
PR426713P-I]
gi|332299686|ref|YP_004441607.1| ribosome-binding factor A [Porphyromonas asaccharolytica DSM 20707]
gi|312924354|gb|EFR35133.1| ribosome-binding factor A [Porphyromonas asaccharolytica
PR426713P-I]
gi|332176749|gb|AEE12439.1| ribosome-binding factor A [Porphyromonas asaccharolytica DSM 20707]
Length = 111
Score = 95.4 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 24/112 (21%), Positives = 54/112 (48%), Gaps = 4/112 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
++RR ++ ++ + + Q + ++S++ V ++ DL A +Y+S+
Sbjct: 1 MDTRRQQKIARLIQKEMGEIFRPLTQQ---LRGVLVSVTLVRVTSDLSKAYIYLSIFPSE 57
Query: 67 SPDRVISALNCNIKFIRGRIGRSL-RNLRYVPELRFRYDTSLQSYWKLNALM 117
D ++ + N R +G+ + LR +PEL +R D SL +++ L+
Sbjct: 58 RADELLKYIQDNAGSYRYELGQRTGKQLRIIPELEYRIDDSLDYLERIDKLL 109
>gi|259501589|ref|ZP_05744491.1| ribosome-binding factor A [Lactobacillus iners DSM 13335]
gi|302191437|ref|ZP_07267691.1| ribosome-binding factor A [Lactobacillus iners AB-1]
gi|312875704|ref|ZP_07735701.1| ribosome-binding factor A [Lactobacillus iners LEAF 2053A-b]
gi|325912464|ref|ZP_08174857.1| ribosome-binding factor A [Lactobacillus iners UPII 143-D]
gi|259167107|gb|EEW51602.1| ribosome-binding factor A [Lactobacillus iners DSM 13335]
gi|311088769|gb|EFQ47216.1| ribosome-binding factor A [Lactobacillus iners LEAF 2053A-b]
gi|325475711|gb|EGC78884.1| ribosome-binding factor A [Lactobacillus iners UPII 143-D]
Length = 118
Score = 95.4 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 34/112 (30%), Positives = 49/112 (43%), Gaps = 6/112 (5%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS-- 67
R RV E+ L ++ E D + ISI+ V + D AT+Y SL D S
Sbjct: 3 HRIGRVEGEILRELTKIL-RKEISDPRLRE--ISITAVECTNDFSYATIYYSLLTDNSVR 59
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
D V L +R + +L L VPEL F+ D S+ K++ L+
Sbjct: 60 EDEVSQGLEKAKGLMRHLLSNNL-TLFKVPELIFKRDNSVAYGSKIDQLIKQ 110
>gi|15834989|ref|NP_296748.1| ribosome-binding factor A [Chlamydia muridarum Nigg]
gi|13431817|sp|Q9PKU1|RBFA_CHLMU RecName: Full=Ribosome-binding factor A
gi|8163212|gb|AAF73551.1| ribosome-binding factor A [Chlamydia muridarum Nigg]
Length = 133
Score = 95.4 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 31/111 (27%), Positives = 58/111 (52%), Gaps = 3/111 (2%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDV 66
+RR +V +R ++ VIL + + IS I+I+ V +S DL+ A VY+S +P +
Sbjct: 3 ENRRMKKVNAMLRESIAKVILK-DVKHPKISNRWITITRVSLSRDLQSARVYVSIMPHEN 61
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
S + ++AL + FI + + + L+Y P+L F + + +L+
Sbjct: 62 SQEETLAALKASAGFIACQASKDV-VLKYFPDLNFYMEDIFSPQDHIESLL 111
>gi|257468344|ref|ZP_05632438.1| ribosome-binding factor A [Fusobacterium ulcerans ATCC 49185]
gi|317062617|ref|ZP_07927102.1| ribosome-binding factor A [Fusobacterium ulcerans ATCC 49185]
gi|313688293|gb|EFS25128.1| ribosome-binding factor A [Fusobacterium ulcerans ATCC 49185]
Length = 115
Score = 95.4 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 31/114 (27%), Positives = 62/114 (54%), Gaps = 5/114 (4%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL--DVS 67
+R + +E+ + +L E ++ I ++S++ V ++ DL+ A V+ S+ DV+
Sbjct: 4 QRLAGIEKEMARVISQALL-EEVKNPKIKG-IVSVTSVHVTEDLKFADVFFSVMGQEDVN 61
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
D V+ LN F+R R+ + +RY+PE+R + D S++ K++ L+ K
Sbjct: 62 TDEVLEGLNQIKGFLRKRVAEEI-EIRYIPEIRVKIDDSIEHAVKISKLLNDLK 114
>gi|269958720|ref|YP_003328507.1| ribosome-binding factor A [Anaplasma centrale str. Israel]
gi|269848549|gb|ACZ49193.1| ribosome-binding factor A [Anaplasma centrale str. Israel]
Length = 117
Score = 95.0 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 38/118 (32%), Positives = 62/118 (52%), Gaps = 6/118 (5%)
Query: 5 NPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL 64
P R+L+V ++ AL + + EF D ++SIS V +S D R ATV++++
Sbjct: 5 TPSAGLRSLKVASVLKRALAQLFIR-EFYD---LSSMLSISGVKVSEDTRNATVFVAIGD 60
Query: 65 -DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
V V++ALN IR + R L+ LRYVP L F+ D ++ +++ +M K
Sbjct: 61 RSVDGGEVVAALNDASNSIRRAVFRYLK-LRYVPRLHFKLDVEFDNFLRISEIMAATK 117
>gi|15604814|ref|NP_219598.1| ribosome-binding factor A [Chlamydia trachomatis D/UW-3/CX]
gi|166154316|ref|YP_001654434.1| ribosome-binding factor A [Chlamydia trachomatis 434/Bu]
gi|166155191|ref|YP_001653446.1| ribosome-binding factor A [Chlamydia trachomatis
L2b/UCH-1/proctitis]
gi|255310897|ref|ZP_05353467.1| ribosome-binding factor A [Chlamydia trachomatis 6276]
gi|255317197|ref|ZP_05358443.1| ribosome-binding factor A [Chlamydia trachomatis 6276s]
gi|255348457|ref|ZP_05380464.1| ribosome-binding factor A [Chlamydia trachomatis 70]
gi|255502999|ref|ZP_05381389.1| ribosome-binding factor A [Chlamydia trachomatis 70s]
gi|255506670|ref|ZP_05382309.1| ribosome-binding factor A [Chlamydia trachomatis D(s)2923]
gi|301335567|ref|ZP_07223811.1| ribosome-binding factor A [Chlamydia trachomatis L2tet1]
gi|6685836|sp|O84097|RBFA_CHLTR RecName: Full=Ribosome-binding factor A
gi|226723593|sp|B0B9K3|RBFA_CHLT2 RecName: Full=Ribosome-binding factor A
gi|226723594|sp|B0BB82|RBFA_CHLTB RecName: Full=Ribosome-binding factor A
gi|3328491|gb|AAC67686.1| Ribosome Binding Factor A [Chlamydia trachomatis D/UW-3/CX]
gi|165930304|emb|CAP03790.1| ribosome-binding factor A [Chlamydia trachomatis 434/Bu]
gi|165931179|emb|CAP06744.1| ribosome-binding factor A [Chlamydia trachomatis
L2b/UCH-1/proctitis]
gi|289525139|emb|CBJ14611.1| ribosome-binding factor A [Chlamydia trachomatis Sweden2]
gi|296434683|gb|ADH16861.1| ribosome-binding factor A [Chlamydia trachomatis E/150]
gi|296435612|gb|ADH17786.1| ribosome-binding factor A [Chlamydia trachomatis G/9768]
gi|296436535|gb|ADH18705.1| ribosome-binding factor A [Chlamydia trachomatis G/11222]
gi|296437472|gb|ADH19633.1| ribosome-binding factor A [Chlamydia trachomatis G/11074]
gi|296438400|gb|ADH20553.1| ribosome-binding factor A [Chlamydia trachomatis E/11023]
gi|297139971|gb|ADH96729.1| ribosome-binding factor A [Chlamydia trachomatis G/9301]
gi|297748224|gb|ADI50770.1| Ribosome-binding factor A [Chlamydia trachomatis D-EC]
gi|297749104|gb|ADI51782.1| Ribosome-binding factor A [Chlamydia trachomatis D-LC]
Length = 123
Score = 95.0 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 33/111 (29%), Positives = 58/111 (52%), Gaps = 3/111 (2%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDV 66
+RR +V +R A+ VIL + + IS I+I+ V +S DL+ A VY+S +P +
Sbjct: 3 ENRRMKKVNAMLREAIAKVILK-DVKHPKISNRWITITRVSLSRDLQSACVYVSIMPHEN 61
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
S + ++AL + FI + + L L+Y P+L F + + +L+
Sbjct: 62 SQEETLAALKASAGFIAFQASKDL-VLKYFPDLNFYVEDIFSPQDHIESLL 111
>gi|329942816|ref|ZP_08291595.1| ribosome-binding factor A [Chlamydophila psittaci Cal10]
gi|332287408|ref|YP_004422309.1| ribosome-binding factor A [Chlamydophila psittaci 6BC]
gi|313847988|emb|CBY16985.1| ribosome-binding factor A [Chlamydophila psittaci RD1]
gi|325507251|gb|ADZ18889.1| ribosome-binding factor A [Chlamydophila psittaci 6BC]
gi|328815076|gb|EGF85065.1| ribosome-binding factor A [Chlamydophila psittaci Cal10]
gi|328914657|gb|AEB55490.1| ribosome-binding factor A [Chlamydophila psittaci 6BC]
Length = 120
Score = 95.0 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 30/111 (27%), Positives = 56/111 (50%), Gaps = 3/111 (2%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDV 66
+RR +V +R A+ VIL + + IS I+++ VC+S DL A VY+S +P +
Sbjct: 3 ENRRIQKVNSLLREAIANVILK-DVKHPKISNRWITVTRVCLSKDLHSARVYVSIMPHEN 61
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ + AL + ++I + + + L+Y PE+ F + + L+
Sbjct: 62 TSTETLEALKASARYIAYKASKGV-VLKYFPEINFYLEDIFSPQDHIENLL 111
>gi|239928607|ref|ZP_04685560.1| ribosome-binding factor A [Streptomyces ghanaensis ATCC 14672]
gi|291436933|ref|ZP_06576323.1| ribosome-binding factor [Streptomyces ghanaensis ATCC 14672]
gi|291339828|gb|EFE66784.1| ribosome-binding factor [Streptomyces ghanaensis ATCC 14672]
Length = 149
Score = 95.0 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 22/108 (20%), Positives = 48/108 (44%), Gaps = 4/108 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-DVSPD 69
RA R+ + +R + + +D + ++I++ ++ DLR ATV+ ++ D
Sbjct: 6 RAKRLADLIREVVAQKLQRG-IKDPRLGTH-VTITDTRVTGDLREATVFYTVYGDDEERK 63
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ L +R +GR+ +++ P L F D + + L+
Sbjct: 64 AAAAGLESAKGILRSEVGRA-AGVKFTPTLTFVMDALPDTARNIEDLL 110
>gi|312871848|ref|ZP_07731933.1| ribosome-binding factor A [Lactobacillus iners LEAF 3008A-a]
gi|312872034|ref|ZP_07732112.1| ribosome-binding factor A [Lactobacillus iners LEAF 2062A-h1]
gi|311092447|gb|EFQ50813.1| ribosome-binding factor A [Lactobacillus iners LEAF 2062A-h1]
gi|311092629|gb|EFQ50988.1| ribosome-binding factor A [Lactobacillus iners LEAF 3008A-a]
Length = 118
Score = 95.0 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 34/112 (30%), Positives = 49/112 (43%), Gaps = 6/112 (5%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS-- 67
R RV E+ L ++ E D + ISI+ V + D AT+Y SL D S
Sbjct: 3 HRIGRVEGEILRELTKIL-RKEISDPRLRE--ISITAVECTNDFSYATIYYSLLTDNSVR 59
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
D V L +R + +L L VPEL F+ D S+ K++ L+
Sbjct: 60 EDEVSQGLEKAKGLMRHLLSNNL-TLFKVPELIFKRDNSVAYGSKMDQLIKQ 110
>gi|317482181|ref|ZP_07941204.1| ribosome-binding factor A [Bifidobacterium sp. 12_1_47BFAA]
gi|316916415|gb|EFV37814.1| ribosome-binding factor A [Bifidobacterium sp. 12_1_47BFAA]
Length = 158
Score = 95.0 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 26/127 (20%), Positives = 54/127 (42%), Gaps = 10/127 (7%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
+ RA R+ ++ + I E D+ ++ I+++EV ++ DL++A VY +
Sbjct: 2 AGTNPRAARIAALIQRVVASSIER-ELHDKRLAS--ITVTEVRVTNDLQIAKVYWTQLGH 58
Query: 66 VSPDR-----VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
+ AL+ +R +G LR P+L+F +D ++ ++ +
Sbjct: 59 EGHEEGERKRAQQALDQAKGHLRSLVGHK-AGLRLTPQLQFVFDEVPGEAHEIEDILAVA 117
Query: 121 KIPVALE 127
K E
Sbjct: 118 K-KRDEE 123
>gi|23336295|ref|ZP_00121518.1| COG0858: Ribosome-binding factor A [Bifidobacterium longum DJO10A]
gi|23466166|ref|NP_696769.1| ribosome-binding factor A [Bifidobacterium longum NCC2705]
gi|189440606|ref|YP_001955687.1| ribosome-binding factor A [Bifidobacterium longum DJO10A]
gi|227546513|ref|ZP_03976562.1| Ribosome-binding factor A [Bifidobacterium longum subsp. infantis
ATCC 55813]
gi|239621509|ref|ZP_04664540.1| ribosome-binding factor A [Bifidobacterium longum subsp. infantis
CCUG 52486]
gi|312133910|ref|YP_004001249.1| rbfa [Bifidobacterium longum subsp. longum BBMN68]
gi|322689893|ref|YP_004209627.1| ribosome-binding factor [Bifidobacterium longum subsp. infantis
157F]
gi|322691834|ref|YP_004221404.1| ribosome-binding factor [Bifidobacterium longum subsp. longum JCM
1217]
gi|29427808|sp|Q8G3Y4|RBFA_BIFLO RecName: Full=Ribosome-binding factor A
gi|238692043|sp|B3DQF1|RBFA_BIFLD RecName: Full=Ribosome-binding factor A
gi|23326905|gb|AAN25405.1| ribosome-binding factor A [Bifidobacterium longum NCC2705]
gi|189429041|gb|ACD99189.1| Ribosome-binding factor A [Bifidobacterium longum DJO10A]
gi|227213062|gb|EEI80941.1| Ribosome-binding factor A [Bifidobacterium longum subsp. infantis
ATCC 55813]
gi|239515384|gb|EEQ55251.1| ribosome-binding factor A [Bifidobacterium longum subsp. infantis
CCUG 52486]
gi|291516438|emb|CBK70054.1| ribosome-binding factor A [Bifidobacterium longum subsp. longum F8]
gi|311773204|gb|ADQ02692.1| RbfA [Bifidobacterium longum subsp. longum BBMN68]
gi|320456690|dbj|BAJ67312.1| ribosome-binding factor [Bifidobacterium longum subsp. longum JCM
1217]
gi|320461229|dbj|BAJ71849.1| ribosome-binding factor [Bifidobacterium longum subsp. infantis
157F]
Length = 157
Score = 95.0 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 26/127 (20%), Positives = 54/127 (42%), Gaps = 10/127 (7%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
+ RA R+ ++ + I E D+ ++ I+++EV ++ DL++A VY +
Sbjct: 2 AGTNPRAARIAALIQRVVASSIER-ELHDKRLAS--ITVTEVRVTNDLQIAKVYWTQLGH 58
Query: 66 VSPDR-----VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
+ AL+ +R +G LR P+L+F +D ++ ++ +
Sbjct: 59 EGHEEGERKRAQQALDQAKGHLRSLVGHK-AGLRLTPQLQFVFDEVPGEAHEIEDILAVA 117
Query: 121 KIPVALE 127
K E
Sbjct: 118 K-KRDEE 123
>gi|298373455|ref|ZP_06983444.1| ribosome-binding factor A [Bacteroidetes oral taxon 274 str. F0058]
gi|298274507|gb|EFI16059.1| ribosome-binding factor A [Bacteroidetes oral taxon 274 str. F0058]
Length = 111
Score = 95.0 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 30/108 (27%), Positives = 56/108 (51%), Gaps = 4/108 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
R ++ ++ L + L + + +IS+S+V +S D +A VYIS+
Sbjct: 5 REDKICRMLQKELGDIFL---LYAKKLQGVIISVSDVSISPDFALARVYISIFPSEKAGD 61
Query: 71 VISALNCNIKFIRGRIGRSLRN-LRYVPELRFRYDTSLQSYWKLNALM 117
+ S ++ + K IR +G+ ++N +R VPEL F D SL +++ L+
Sbjct: 62 IFSTIDTDSKSIRFELGKRIKNMMRTVPELTFVLDDSLNYLERIDDLL 109
>gi|88802041|ref|ZP_01117569.1| putative ribosome-binding factor A [Polaribacter irgensii 23-P]
gi|88782699|gb|EAR13876.1| putative ribosome-binding factor A [Polaribacter irgensii 23-P]
Length = 131
Score = 95.0 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 57/117 (48%), Gaps = 3/117 (2%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
+ + R ++ ++ L+ V+ + +IS+S+V ++ DL VA VY+S+
Sbjct: 2 EETNRQRKIAGVLQKDLVDVLQKAAQD--GMKGVIISVSKVHVTADLGVAKVYLSIFPSE 59
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRN-LRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
+ D ++ + N IR + + RN LR +PEL F D +L +++ + +
Sbjct: 60 NRDEIVKGVQSNTPLIRHEMAKRTRNQLRRMPELLFFGDDTLDYIEEIDKSLKGNDV 116
>gi|242278475|ref|YP_002990604.1| ribosome-binding factor A [Desulfovibrio salexigens DSM 2638]
gi|242121369|gb|ACS79065.1| ribosome-binding factor A [Desulfovibrio salexigens DSM 2638]
Length = 117
Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 27/104 (25%), Positives = 58/104 (55%), Gaps = 5/104 (4%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
SRR++++G+++ + +++ E D + ++SIS V M+ D ++A V ++ D
Sbjct: 4 STSRRSVKMGDQIMREIATMLI-EEIGDPRLE--MVSISGVRMNKDNKIAEVMFTMAGDK 60
Query: 67 SP-DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQS 109
+ AL+ ++R ++ + +R +R +PELRF +D L+
Sbjct: 61 EKIAAAVKALDKAKGYMRSKLSKRIR-VRQIPELRFVHDNFLEE 103
>gi|237736661|ref|ZP_04567142.1| ribosome-binding factor A [Fusobacterium mortiferum ATCC 9817]
gi|229420523|gb|EEO35570.1| ribosome-binding factor A [Fusobacterium mortiferum ATCC 9817]
Length = 120
Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 60/119 (50%), Gaps = 10/119 (8%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV--- 66
+R + +E+ + V+ E ++ I R ++S++ + ++ DL+ A VY S+
Sbjct: 4 QRLAGIEKEMSRVISQVLF-EEIKNPKI-RGLVSVTNIRVTEDLKFADVYFSIMSGQMNG 61
Query: 67 ----SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+ V+ LN ++R R+ + +RY+PE+R + D S++ K++ L+ K
Sbjct: 62 EKAVDKETVLEGLNQIKGYLRKRVAEEI-EIRYIPEIRVKLDDSIEHAIKISKLLNDLK 119
>gi|329936652|ref|ZP_08286359.1| ribosome-binding factor A [Streptomyces griseoaurantiacus M045]
gi|329303882|gb|EGG47765.1| ribosome-binding factor A [Streptomyces griseoaurantiacus M045]
Length = 152
Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 22/108 (20%), Positives = 50/108 (46%), Gaps = 4/108 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
RA R+ + +R + + +D + ++I++ ++ DLR ATV+ ++ D +
Sbjct: 6 RAKRLADLIREVVAQKLQRG-IKDPRLGSH-VTITDTRVTGDLREATVFYTVYGDEEERQ 63
Query: 71 VISA-LNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+A L +R +G++ +++ P L F D + + L+
Sbjct: 64 AAAAGLESAKGILRSEVGKA-AGVKFTPTLAFVADALPDTARNIEDLL 110
>gi|269792601|ref|YP_003317505.1| ribosome-binding factor A [Thermanaerovibrio acidaminovorans DSM
6589]
gi|269100236|gb|ACZ19223.1| ribosome-binding factor A [Thermanaerovibrio acidaminovorans DSM
6589]
Length = 137
Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 30/109 (27%), Positives = 51/109 (46%), Gaps = 4/109 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
R R+ +E + ++L +D + ++ V S DL VA VY ++ +
Sbjct: 5 RIERLNKEFLREIS-LLLQGRVKDDR--AKMAILTGVSCSKDLSVAKVYFTVLDRSKVEE 61
Query: 71 VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
V L IRG +GR +R LR +PE RF YD + +++A++
Sbjct: 62 VRLGLEGASGLIRGMLGREMR-LRKIPEFRFIYDDTEDRAGRVDAILDS 109
>gi|296454833|ref|YP_003661977.1| ribosome-binding factor A [Bifidobacterium longum subsp. longum
JDM301]
gi|296184265|gb|ADH01147.1| ribosome-binding factor A [Bifidobacterium longum subsp. longum
JDM301]
Length = 158
Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 26/127 (20%), Positives = 54/127 (42%), Gaps = 10/127 (7%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
+ RA R+ ++ + I E D+ ++ I+++EV ++ DL++A VY +
Sbjct: 2 AGTNPRAARIAALIQRVVASSIER-ELHDKRLAS--ITVTEVRVTNDLQIAKVYWTQLGH 58
Query: 66 VSPDR-----VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
+ AL+ +R +G LR P+L+F +D ++ ++ +
Sbjct: 59 EGHEEGERKRAQQALDQAKGHLRSLVGHK-AGLRLTPQLQFVFDEVPGEAHEIEDILAVA 117
Query: 121 KIPVALE 127
K E
Sbjct: 118 K-KRDEE 123
>gi|268608282|ref|ZP_06142009.1| ribosome-binding factor A [Ruminococcus flavefaciens FD-1]
Length = 112
Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 20/107 (18%), Positives = 49/107 (45%), Gaps = 5/107 (4%)
Query: 14 RVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPD-RVI 72
R+ E+++ + ++ E +D I + +++I +S D+ +Y+S + +
Sbjct: 8 RMAEDIKREMTAIL--RELKDPRIDK-MLTIVRTELSGDMSNCKIYVSSFQGMEKAIESV 64
Query: 73 SALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
L FI+ + L+ +R P+L F D S++ +++ +
Sbjct: 65 KGLKSAEGFIKRELFHRLK-MRKAPDLTFVADNSIERSAEISKKLND 110
>gi|223936319|ref|ZP_03628231.1| ribosome-binding factor A [bacterium Ellin514]
gi|223894837|gb|EEF61286.1| ribosome-binding factor A [bacterium Ellin514]
Length = 125
Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 33/116 (28%), Positives = 58/116 (50%), Gaps = 5/116 (4%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-D 65
S R RV E ++ + VI + +I+++EV +S DL ATV+I + D
Sbjct: 1 MPSLRLQRVRELLKREIGEVIRREI---PVGESGLITVNEVGVSSDLHSATVFIGILGTD 57
Query: 66 VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+ + LN + K I+G +G+++ L+Y P LRF D S+ K+ ++ +
Sbjct: 58 QQKKKGFAQLNHHRKRIQGLVGQAV-ILKYTPTLRFVLDESIAEGNKVLQIIDELE 112
>gi|253581493|ref|ZP_04858718.1| ribosome-binding factor A [Fusobacterium varium ATCC 27725]
gi|251836563|gb|EES65098.1| ribosome-binding factor A [Fusobacterium varium ATCC 27725]
Length = 115
Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 29/114 (25%), Positives = 60/114 (52%), Gaps = 5/114 (4%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS-- 67
+R + +E+ + +L E ++ I ++S++ V ++ DL+ A V+ S+ +
Sbjct: 4 QRLAGIEKEMARVISQALL-EEVKNPKIKG-IVSVTSVHVTEDLKFADVFFSIMGQENIN 61
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
D V+ LN F+R R+ + +RY+PE+R + D S++ K++ L+ K
Sbjct: 62 TDEVLEGLNQIKGFLRKRVAEEI-EIRYIPEIRVKIDDSIEHAVKISKLLNDLK 114
>gi|123965361|ref|YP_001010442.1| ribosome-binding factor A [Prochlorococcus marinus str. MIT 9515]
gi|166219389|sp|A2BU74|RBFA_PROM5 RecName: Full=Ribosome-binding factor A
gi|123199727|gb|ABM71335.1| Ribosome-binding factor A [Prochlorococcus marinus str. MIT 9515]
Length = 132
Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 31/111 (27%), Positives = 61/111 (54%), Gaps = 3/111 (2%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS 67
N+ R +V ++ + +IL N+ ++ L+ + ISIS++ ++ DL+ +YIS + +
Sbjct: 3 NNYRIAKVSSLLKKEIT-LILQNDLENDLLRSNFISISKIEVTGDLQFCKIYISSAAEGN 61
Query: 68 -PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+I LN +I+ +G+ + +R VPEL F+ DT+L + L+
Sbjct: 62 IRKEIIENLNLAKNYIKHILGQRI-EMRRVPELTFKDDTALAKGLSVLKLL 111
>gi|21224056|ref|NP_629835.1| ribosome-binding factor A [Streptomyces coelicolor A3(2)]
gi|256784865|ref|ZP_05523296.1| ribosome-binding factor A [Streptomyces lividans TK24]
gi|289768759|ref|ZP_06528137.1| ribosome-binding factor A [Streptomyces lividans TK24]
gi|6225918|sp|Q9Z527|RBFA_STRCO RecName: Full=Ribosome-binding factor A
gi|4464272|emb|CAB37475.1| putative ribosome-binding factor [Streptomyces coelicolor A3(2)]
gi|289698958|gb|EFD66387.1| ribosome-binding factor A [Streptomyces lividans TK24]
Length = 160
Score = 94.3 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 21/108 (19%), Positives = 48/108 (44%), Gaps = 4/108 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-DVSPD 69
RA R+ + +R + + +D + ++I++ ++ DLR ATV+ ++ D
Sbjct: 6 RAKRLADLIREVVAQKLQRG-IKDPRLGSH-VTITDTRVTGDLREATVFYTVYGDDEERK 63
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ L +R +G++ +++ P L F D + + L+
Sbjct: 64 AATAGLESAKGILRSEVGKA-AGVKFTPTLTFVMDALPDTARNIEDLL 110
>gi|326335659|ref|ZP_08201846.1| ribosome-binding factor A [Capnocytophaga sp. oral taxon 338 str.
F0234]
gi|325692425|gb|EGD34377.1| ribosome-binding factor A [Capnocytophaga sp. oral taxon 338 str.
F0234]
Length = 130
Score = 94.3 bits (234), Expect = 5e-18, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 60/120 (50%), Gaps = 2/120 (1%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
+ R ++ ++ L ++ Q ++ +IS+++V ++VDL +A VYIS+ +
Sbjct: 1 METNRQKKIAGLLQEDLGDILGR-AVQAGGLTNLIISVTKVAVTVDLTLAKVYISVFPNE 59
Query: 67 SPDRVISALNCNIKFIRGRIGRSLR-NLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
++SA+ N I+ + + R LR +P+L F D SL+ ++ + + P+
Sbjct: 60 RGVEILSAIQSNNSQIKHEVAQRTRYQLRKMPDLSFFLDDSLEYLSQIEHSLKGEENPIE 119
>gi|213693050|ref|YP_002323636.1| ribosome-binding factor A [Bifidobacterium longum subsp. infantis
ATCC 15697]
gi|254789734|sp|B7GNA2|RBFA_BIFLI RecName: Full=Ribosome-binding factor A
gi|213524511|gb|ACJ53258.1| ribosome-binding factor A [Bifidobacterium longum subsp. infantis
ATCC 15697]
gi|320459227|dbj|BAJ69848.1| ribosome-binding factor [Bifidobacterium longum subsp. infantis
ATCC 15697]
Length = 158
Score = 94.3 bits (234), Expect = 5e-18, Method: Composition-based stats.
Identities = 26/127 (20%), Positives = 54/127 (42%), Gaps = 10/127 (7%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
+ RA R+ ++ + I E D+ ++ I+++EV ++ DL++A VY +
Sbjct: 2 AGTNPRAARIAALIQRVVASSIER-ELHDKRLAS--ITVTEVRVTNDLQIAKVYWTQLGH 58
Query: 66 VSPDR-----VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
+ AL+ +R +G LR P+L+F +D ++ ++ +
Sbjct: 59 EGHEEGERKRAQQALDQAKGHLRSLVGHK-AGLRLTPQLQFVFDEVPGEAHEIEDILAVA 117
Query: 121 KIPVALE 127
K E
Sbjct: 118 K-KRDEE 123
>gi|257068216|ref|YP_003154471.1| ribosome-binding factor A [Brachybacterium faecium DSM 4810]
gi|256559034|gb|ACU84881.1| ribosome-binding factor A [Brachybacterium faecium DSM 4810]
Length = 169
Score = 94.3 bits (234), Expect = 5e-18, Method: Composition-based stats.
Identities = 25/121 (20%), Positives = 57/121 (47%), Gaps = 6/121 (4%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-DV 66
++ RALR+ + ++ + ++ + +D + ++I++V ++ DL+ ATV+ ++ D
Sbjct: 3 DNPRALRLADRIKVIVATML-DTRVKDPRLG--FVTITDVRVTGDLQHATVFYTVFGTDE 59
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVAL 126
+ +AL +R +GR +R P L F D ++ + L+ +
Sbjct: 60 EREGTAAALESATGMLRREVGRQ-TGVRLTPTLEFIADAVPENARVIEDLLSEAR-GRDA 117
Query: 127 E 127
E
Sbjct: 118 E 118
>gi|62185079|ref|YP_219864.1| ribosome-binding factor A [Chlamydophila abortus S26/3]
gi|81312755|sp|Q5L628|RBFA_CHLAB RecName: Full=Ribosome-binding factor A
gi|62148146|emb|CAH63903.1| ribosome-binding factor A [Chlamydophila abortus S26/3]
Length = 120
Score = 94.3 bits (234), Expect = 6e-18, Method: Composition-based stats.
Identities = 30/111 (27%), Positives = 56/111 (50%), Gaps = 3/111 (2%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDV 66
+RR +V +R A+ VIL + + IS I+++ VC+S DL A VY+S +P +
Sbjct: 3 ENRRIKKVNSLLREAIANVILK-DVKHPKISNRWITVTRVCLSKDLHSARVYVSIMPHEN 61
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ + AL + ++I + + + L+Y PE+ F + + L+
Sbjct: 62 TSTETLEALKASARYIAYKASKGV-VLKYFPEINFYLEDIFSPQDHIENLL 111
>gi|196229762|ref|ZP_03128626.1| ribosome-binding factor A [Chthoniobacter flavus Ellin428]
gi|196226088|gb|EDY20594.1| ribosome-binding factor A [Chthoniobacter flavus Ellin428]
Length = 128
Score = 94.3 bits (234), Expect = 6e-18, Method: Composition-based stats.
Identities = 23/114 (20%), Positives = 55/114 (48%), Gaps = 6/114 (5%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSP 68
R RV E ++ L ++ ++++ +V ++ DL+ A V+IS + D
Sbjct: 3 HRLERVNELLKRELGELLSREV----SFEAALVTVQQVDITPDLKHAHVFISVIGSDEQA 58
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
++ L+ + K ++ + + + L+Y P L F+ D S++ ++ ++ +I
Sbjct: 59 RAAMAKLHDSRKNLQHLLSKRV-VLKYTPHLHFKLDESIERGTRVINILSQIEI 111
>gi|330836564|ref|YP_004411205.1| Ribosome-binding factor A [Spirochaeta coccoides DSM 17374]
gi|329748467|gb|AEC01823.1| Ribosome-binding factor A [Spirochaeta coccoides DSM 17374]
Length = 124
Score = 93.9 bits (233), Expect = 6e-18, Method: Composition-based stats.
Identities = 34/115 (29%), Positives = 62/115 (53%), Gaps = 3/115 (2%)
Query: 12 ALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP-DR 70
R+ VR A+ +I++ E ++ L++ ++S++ V +S D ATVY+S P+D +
Sbjct: 6 QKRIESRVREAVGMLIVSGEIKNPLLNT-LVSVTRVVVSKDNAYATVYLSAPIDDHDLEC 64
Query: 71 VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
I+AL FI+ R+G L R P L F+ D +++ ++NAL+ +
Sbjct: 65 SITALTKAAGFIQKRVGDFLGT-RNTPRLTFKADVAVRDGDEINALLDSLRQERE 118
>gi|71891892|ref|YP_277622.1| 30S ribosome-binding factor [Candidatus Blochmannia pennsylvanicus
str. BPEN]
gi|123641156|sp|Q493T6|RBFA_BLOPB RecName: Full=Ribosome-binding factor A
gi|71795998|gb|AAZ40749.1| 30S ribosome-binding factor [Candidatus Blochmannia pennsylvanicus
str. BPEN]
Length = 119
Score = 93.9 bits (233), Expect = 6e-18, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 60/118 (50%), Gaps = 7/118 (5%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
++S R R+ E+ + +IL ++ D I +IS V +S DL+ A ++++
Sbjct: 4 QHSYRTQRIANEIHKKVS-IILQHKIDDIRIGIP--TISGVQVSKDLKNANIFVTFINKE 60
Query: 67 SPDRVISA---LNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
P+ + +A L +FIR + ++ +R P L F+YD+SL K+ +L+ +
Sbjct: 61 GPEEIDTAVMILQRASRFIRFLLANTM-CIRVAPILFFKYDSSLIEGAKVCSLISTTE 117
>gi|328953961|ref|YP_004371295.1| Ribosome-binding factor A [Desulfobacca acetoxidans DSM 11109]
gi|328454285|gb|AEB10114.1| Ribosome-binding factor A [Desulfobacca acetoxidans DSM 11109]
Length = 127
Score = 93.9 bits (233), Expect = 6e-18, Method: Composition-based stats.
Identities = 30/113 (26%), Positives = 56/113 (49%), Gaps = 5/113 (4%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI-SLPLDV 66
+ +R R+GE +R + ++L +D + + I+I+ V +S DLR A VY + +
Sbjct: 4 DYKRRDRIGELLREKIALILLRKS-RDPRLQQ--ITITSVAISDDLRRAKVYYLTRGQEA 60
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
AL FI+ + + LR +PEL F+ D S + ++++L+
Sbjct: 61 EVPANQKALQKASGFIKQELAQE-HILRVMPELIFQLDDSWRRGERVDSLLRR 112
>gi|291457239|ref|ZP_06596629.1| ribosome-binding factor A [Bifidobacterium breve DSM 20213]
gi|291381074|gb|EFE88592.1| ribosome-binding factor A [Bifidobacterium breve DSM 20213]
Length = 161
Score = 93.9 bits (233), Expect = 8e-18, Method: Composition-based stats.
Identities = 27/127 (21%), Positives = 56/127 (44%), Gaps = 10/127 (7%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL- 64
+ RA R+ ++ + I +E D+ +S I+++EV ++ DL++A +Y +
Sbjct: 2 AGTNPRAARIAALIQRVVASSI-EHELHDKRLSS--ITVTEVRVTNDLQIAKIYWTQLGH 58
Query: 65 ----DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
D R AL+ +R +G LR P+L+F +D ++ ++ +
Sbjct: 59 EGHEDGERKRAQQALDQAKGHLRTLVGHK-AGLRLTPQLQFVFDEVPGEAHEIEDILAMA 117
Query: 121 KIPVALE 127
K +
Sbjct: 118 K-KRDED 123
>gi|326333607|ref|ZP_08199846.1| ribosome-binding factor A [Nocardioidaceae bacterium Broad-1]
gi|325948623|gb|EGD40724.1| ribosome-binding factor A [Nocardioidaceae bacterium Broad-1]
Length = 153
Score = 93.5 bits (232), Expect = 8e-18, Method: Composition-based stats.
Identities = 22/123 (17%), Positives = 52/123 (42%), Gaps = 7/123 (5%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
+S R R+ + ++ + ++ +D I +++++V ++ D + AT++ ++
Sbjct: 3 MSSPRVRRIADRIKVIVAQMLERR-IKDPRIG--FVTVTDVRVTGDSQQATIFYTVLGAD 59
Query: 67 SPDR---VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIP 123
S +AL IR + + L R P L F +D ++ L+ ++ K
Sbjct: 60 SEAELAGTAAALESAKGLIRSEVAKQLGT-RTAPTLEFIHDALPETARHLDDVLARAKAQ 118
Query: 124 VAL 126
Sbjct: 119 DDA 121
>gi|89889706|ref|ZP_01201217.1| ribosome-binding factor A [Flavobacteria bacterium BBFL7]
gi|89517979|gb|EAS20635.1| ribosome-binding factor A [Flavobacteria bacterium BBFL7]
Length = 131
Score = 93.5 bits (232), Expect = 8e-18, Method: Composition-based stats.
Identities = 24/120 (20%), Positives = 57/120 (47%), Gaps = 2/120 (1%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
+ S R ++ ++ + VI + + + ++S+++V ++ DL A Y+S+
Sbjct: 2 EESNRQKKISGILQEDISSVI-QDYLRKNTVKNLLVSVTKVTVTPDLGYAKAYLSVFPAD 60
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRN-LRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
V+ + +R ++ +R+ LR +PEL+F D SL+ +++ + P+
Sbjct: 61 KAAAVVQEIVEIGPELRHQVAAKVRHQLRRMPELQFFNDDSLEYMDQIDKELKGLNNPID 120
>gi|290957017|ref|YP_003488199.1| ribosome-binding factor A [Streptomyces scabiei 87.22]
gi|260646543|emb|CBG69640.1| putative ribosome-binding factor A [Streptomyces scabiei 87.22]
Length = 151
Score = 93.5 bits (232), Expect = 8e-18, Method: Composition-based stats.
Identities = 23/108 (21%), Positives = 50/108 (46%), Gaps = 4/108 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-DVSPD 69
RA R+ + +R + +L +D + ++I++ ++ DLR ATV+ ++ D
Sbjct: 6 RAKRLADLIREVVAQKLLRG-IKDPRLGSH-VTITDTRVTGDLREATVFYTVYGDDEERA 63
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ L +R +GR+ +++ P L F D + ++ L+
Sbjct: 64 AAAAGLESAKGILRSEVGRA-AQVKFTPTLTFVADALPDTAKTIDDLL 110
>gi|284108778|ref|ZP_06386443.1| Ribosome-binding factor A [Candidatus Poribacteria sp. WGA-A3]
gi|283829852|gb|EFC34143.1| Ribosome-binding factor A [Candidatus Poribacteria sp. WGA-A3]
Length = 117
Score = 93.5 bits (232), Expect = 9e-18, Method: Composition-based stats.
Identities = 27/107 (25%), Positives = 52/107 (48%), Gaps = 7/107 (6%)
Query: 22 ALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVI-SALNCNIK 80
+ ++ + +D + +++++V M+ DLR A VY+SL + + L+
Sbjct: 2 EVADILAR-KCKDPRL--RFVTVTDVEMNNDLRKAYVYVSLLGNQVETETVGKILDNASG 58
Query: 81 FIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALE 127
F+R +GR L LRY PE+ FR+D+ K+ ++ + E
Sbjct: 59 FVRLELGRRL-ELRYTPEVSFRFDSGGSRAEKIGLIL--DAVRPESE 102
>gi|149369322|ref|ZP_01889174.1| ribosome-binding factor A [unidentified eubacterium SCB49]
gi|149356749|gb|EDM45304.1| ribosome-binding factor A [unidentified eubacterium SCB49]
Length = 131
Score = 93.5 bits (232), Expect = 9e-18, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 60/118 (50%), Gaps = 2/118 (1%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
+ S R ++ ++ L V+ N ++ +IS+S+V ++VDL +A VY+S+
Sbjct: 2 EESNRQKKIAGVLQEDLAGVL-QNILRESGQLGTLISVSKVNVTVDLSIAKVYVSVFPTT 60
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRN-LRYVPELRFRYDTSLQSYWKLNALMCLPKIP 123
+ ++ +N I+ ++ + R+ LR +PEL F D SL +++ + + P
Sbjct: 61 NAAAIVKEINDGKSKIKHQVAQLTRHQLRRMPELHFFNDDSLDYIEQIDEAVKGKENP 118
>gi|302558067|ref|ZP_07310409.1| ribosome-binding factor A [Streptomyces griseoflavus Tu4000]
gi|302475685|gb|EFL38778.1| ribosome-binding factor A [Streptomyces griseoflavus Tu4000]
Length = 149
Score = 93.5 bits (232), Expect = 9e-18, Method: Composition-based stats.
Identities = 22/110 (20%), Positives = 48/110 (43%), Gaps = 4/110 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-DVSPD 69
RA R+ + +R + + +D + ++I++ ++ DLR ATV+ ++ D
Sbjct: 6 RAKRLADLIREVVAQKLQRG-IKDPRLGTH-VTITDTRVTGDLREATVFYTVYGDDEERK 63
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ L +R +GR+ +++ P L F D + + L+
Sbjct: 64 AAAAGLESAKGILRSEVGRA-AGVKFTPTLTFVMDALPDTARNIEDLLDR 112
>gi|297744711|emb|CBI37973.3| unnamed protein product [Vitis vinifera]
Length = 146
Score = 93.5 bits (232), Expect = 9e-18, Method: Composition-based stats.
Identities = 32/92 (34%), Positives = 52/92 (56%), Gaps = 3/92 (3%)
Query: 34 DRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRV-ISALNCNIKFIRGRIGRSLRN 92
DR +S + +IS+V +S DL+V VY+S+ D V I+ L K++R +GR ++
Sbjct: 21 DRYLSS-LTTISDVEVSADLQVVKVYVSVFGDEKGKEVAIAGLKSKAKYVRSELGRRMK- 78
Query: 93 LRYVPELRFRYDTSLQSYWKLNALMCLPKIPV 124
LR PE+RF D SL+ ++ A++ K
Sbjct: 79 LRLTPEIRFVEDESLERGSRVIAILDRIKNEK 110
>gi|294631736|ref|ZP_06710296.1| ribosome-binding factor A [Streptomyces sp. e14]
gi|292835069|gb|EFF93418.1| ribosome-binding factor A [Streptomyces sp. e14]
Length = 153
Score = 93.5 bits (232), Expect = 1e-17, Method: Composition-based stats.
Identities = 22/108 (20%), Positives = 48/108 (44%), Gaps = 4/108 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-DVSPD 69
RA R+ + +R + + +D + ++I++ ++ DLR ATV+ ++ D
Sbjct: 6 RAKRLADLIREVVAQKLQRG-IKDPRLGSH-VTITDTRVTGDLREATVFYTVYGDDEERQ 63
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ L +R +GR+ +++ P L F D + + L+
Sbjct: 64 AAAAGLESAKGILRSEVGRA-AGVKFTPTLTFVADALPDTARTIENLL 110
>gi|86144147|ref|ZP_01062484.1| ribosome-binding factor A [Leeuwenhoekiella blandensis MED217]
gi|85829409|gb|EAQ47874.1| ribosome-binding factor A [Leeuwenhoekiella blandensis MED217]
Length = 130
Score = 93.1 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 56/118 (47%), Gaps = 2/118 (1%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
+ R +V ++ L+ VI + + ++S+S+V ++ DL A VYIS+
Sbjct: 1 METNRQKKVAGVLQRDLVDVI-QKALMEAGVKNIIVSVSKVNVTTDLSQAKVYISVFPHD 59
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRN-LRYVPELRFRYDTSLQSYWKLNALMCLPKIP 123
++ ++ FI+ I R+ LR +PEL+F D SL+ ++ + + P
Sbjct: 60 KASEILKEVSAVKPFIKHEIANRTRHQLRRMPELQFYIDDSLEYIDGIDKSLKGSEDP 117
>gi|320159634|ref|YP_004172858.1| ribosome-binding factor A [Anaerolinea thermophila UNI-1]
gi|319993487|dbj|BAJ62258.1| ribosome-binding factor A [Anaerolinea thermophila UNI-1]
Length = 135
Score = 93.1 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 24/110 (21%), Positives = 52/110 (47%), Gaps = 5/110 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
R R+ + +R L +++ E D ++ IS+++V + +L A +++S + +
Sbjct: 6 RLKRIEDRIREDLAELLVR-EVADPRLAG--ISVTDVKVDRELAYADIFVSAVEGQARKE 62
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
V+ L F+R + ++ LR P LRF +D + + + L+
Sbjct: 63 EVLEGLRHAAGFLRSALAANI-ELRTFPRLRFHWDVTPERADHIERLLAS 111
>gi|254382100|ref|ZP_04997462.1| ribosome-binding factor A [Streptomyces sp. Mg1]
gi|194341007|gb|EDX21973.1| ribosome-binding factor A [Streptomyces sp. Mg1]
Length = 149
Score = 93.1 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 22/108 (20%), Positives = 49/108 (45%), Gaps = 4/108 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-DVSPD 69
RA ++ + +R + +L +D + ++I++ ++ DLR ATV+ ++ D
Sbjct: 6 RAKKLADLIREVVAEKLLRG-VKDPRLGTH-VTITDTRVTGDLREATVFYTVYGDDEDRA 63
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ L +R +GR+ ++ P L F D ++ + L+
Sbjct: 64 SAAAGLESAKGVLRSAVGRA-AGTKFTPTLTFVADALPENAKTIEDLL 110
>gi|228469897|ref|ZP_04054836.1| ribosome-binding factor A [Porphyromonas uenonis 60-3]
gi|228308532|gb|EEK17320.1| ribosome-binding factor A [Porphyromonas uenonis 60-3]
Length = 111
Score = 93.1 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 22/114 (19%), Positives = 53/114 (46%), Gaps = 4/114 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
++RR ++ ++ + + Q + ++S++ V ++ DL A +Y+S+
Sbjct: 1 MDTRRQQKIARLIQKEMGEIFRPLTQQ---LRGVLVSVTLVRVTSDLSRAHIYLSIFPSE 57
Query: 67 SPDRVISALNCNIKFIRGRIGRSL-RNLRYVPELRFRYDTSLQSYWKLNALMCL 119
D ++ + N R +G+ + LR +PE+ + D SL +++ L+
Sbjct: 58 RADELLKYIQDNAGSYRYELGQRTGQQLRVIPEMEYHIDDSLDYLERIDKLLEQ 111
>gi|197294653|ref|YP_001799194.1| Ribosome-binding factor A [Candidatus Phytoplasma australiense]
gi|171853980|emb|CAM11943.1| Ribosome-binding factor A [Candidatus Phytoplasma australiense]
Length = 114
Score = 93.1 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 30/112 (26%), Positives = 55/112 (49%), Gaps = 6/112 (5%)
Query: 12 ALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP--D 69
A R+ ++ L V++N QD I I++++V ++ DL A VY ++ D
Sbjct: 6 AERMASAIKKEL--VLINTIIQDEQIGY--INLTDVQVTKDLSFANVYYTILSDSPDILK 61
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+A+ N IR + + ++N R +P+L F+YD SL + ++ K
Sbjct: 62 LASNAIEENKVVIRMELAKKIKNFRKIPDLIFKYDKSLSYGRHIENILKDIK 113
>gi|160947560|ref|ZP_02094727.1| hypothetical protein PEPMIC_01495 [Parvimonas micra ATCC 33270]
gi|158446694|gb|EDP23689.1| hypothetical protein PEPMIC_01495 [Parvimonas micra ATCC 33270]
Length = 132
Score = 93.1 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 57/112 (50%), Gaps = 3/112 (2%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD- 65
N++R R+ E+ L I N +D I + +I++V ++ DL + V I + D
Sbjct: 1 MNAKRLGRIESEINRVLSDAIYNG-IKDNRIDPSITNITKVSVTNDLGICYVSIGVFGDT 59
Query: 66 VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ ++ + L +++ RI +L +LR+ P+L F+ D S + +N L+
Sbjct: 60 KTKEKTMKGLESATGYMKKRISETL-DLRHTPKLIFKLDESFEKAALMNELI 110
>gi|302537265|ref|ZP_07289607.1| ribosome-binding factor A [Streptomyces sp. C]
gi|302446160|gb|EFL17976.1| ribosome-binding factor A [Streptomyces sp. C]
Length = 150
Score = 92.7 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 21/108 (19%), Positives = 48/108 (44%), Gaps = 4/108 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-DVSPD 69
RA ++ + +R + + +D + ++I++ ++ DLR ATV+ ++ D
Sbjct: 6 RAKKLADLIREVVAEKLQRG-VKDPRLGTH-VTITDTRVTGDLREATVFYTVYGDDEDRA 63
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ L +R +GR+ ++ P L F D ++ + L+
Sbjct: 64 SAAAGLESAKGVLRSAVGRA-AGTKFTPTLTFVADALPENARTIEDLL 110
>gi|311744148|ref|ZP_07717953.1| ribosome-binding factor A [Aeromicrobium marinum DSM 15272]
gi|311312503|gb|EFQ82415.1| ribosome-binding factor A [Aeromicrobium marinum DSM 15272]
Length = 157
Score = 92.7 bits (230), Expect = 2e-17, Method: Composition-based stats.
Identities = 20/112 (17%), Positives = 54/112 (48%), Gaps = 5/112 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV-SPD 69
R ++ + ++ + ++ +D + ++I++V ++ D + A+++ ++ D D
Sbjct: 5 RHHQIADRIKVVVAEMLERR-IKDPRLG--FVTITDVRLTGDNQHASIFYTVLGDQADID 61
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
R +AL +R +G+ L +R+ P L F D ++ ++ L+ +
Sbjct: 62 RTAAALASANGVLRKEVGKQL-GIRHTPSLEFFLDAVPETARQIEDLLNRAR 112
>gi|88855369|ref|ZP_01130033.1| ribosome-binding factor A [marine actinobacterium PHSC20C1]
gi|88815276|gb|EAR25134.1| ribosome-binding factor A [marine actinobacterium PHSC20C1]
Length = 167
Score = 92.3 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 20/112 (17%), Positives = 52/112 (46%), Gaps = 5/112 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-DVSPD 69
RA ++ + ++ + + +D + ++I++V ++ DL+ A+V+ ++ D
Sbjct: 6 RAAKMADRIKVIVAKTLERG-IRDPRLG--FVTITDVRVTGDLQHASVFFTVYGTDEERL 62
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+AL +R +G++L R P + F D ++ +++L+
Sbjct: 63 DSAAALKSATGLVRREVGKNLTA-RLTPSIEFIPDGIPENAALIDSLLTEAH 113
>gi|256419440|ref|YP_003120093.1| ribosome-binding factor A [Chitinophaga pinensis DSM 2588]
gi|256034348|gb|ACU57892.1| ribosome-binding factor A [Chitinophaga pinensis DSM 2588]
Length = 124
Score = 92.3 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 28/116 (24%), Positives = 57/116 (49%), Gaps = 3/116 (2%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
+ S+R ++G+ ++ L + F ++ +ISIS V ++ DL A VY+S+
Sbjct: 2 QESKRQKQIGQLLQKELSEIFQRMGFN--VVDGGMISISSVKLTPDLLEARVYLSMFKIA 59
Query: 67 SPDRVISALNCNIKFIRGRIGRSL-RNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+++ + + I+ +G + + LR VPE+ D +L+ +K+ L K
Sbjct: 60 DSHEMVNRIKERMGEIKKDLGNRVGKQLRRVPEISLFLDDTLEYIFKMEELFKKIK 115
>gi|170287879|ref|YP_001738117.1| ribosome-binding factor A [Thermotoga sp. RQ2]
gi|238688759|sp|B1LCH6|RBFA_THESQ RecName: Full=Ribosome-binding factor A
gi|170175382|gb|ACB08434.1| ribosome-binding factor A [Thermotoga sp. RQ2]
Length = 131
Score = 92.3 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 30/108 (27%), Positives = 51/108 (47%), Gaps = 4/108 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD-VSPD 69
R + E++ LM + +D + +D ++ S V +S D R A VY+S
Sbjct: 6 RKAMLESEIQKLLMEALQQ--LRDPRLKKDFVTFSRVELSKDKRYADVYVSFLGTPEERK 63
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ LN F R I ++LR L PE+RF D +++ K++ L+
Sbjct: 64 ETVEILNRAKGFFRTFIAKNLR-LYVAPEIRFYEDKGIEASVKVHQLL 110
>gi|15643618|ref|NP_228664.1| ribosome binding factor A [Thermotoga maritima MSB8]
gi|20978666|sp|Q9WZV9|RBFA_THEMA RecName: Full=Ribosome-binding factor A
gi|4981389|gb|AAD35937.1|AE001752_4 ribosome binding factor A [Thermotoga maritima MSB8]
Length = 131
Score = 92.3 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 30/108 (27%), Positives = 51/108 (47%), Gaps = 4/108 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD-VSPD 69
R + E++ LM + +D + +D ++ S V +S D R A VY+S
Sbjct: 6 RKAMLESEIQKLLMEALQQ--LRDPRLKKDFVTFSRVELSKDKRYADVYVSFLGTPEERK 63
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ LN F R I ++LR L PE+RF D +++ K++ L+
Sbjct: 64 ETVEILNRAKGFFRTFIAKNLR-LYVAPEIRFYEDKGIEASVKVHQLL 110
>gi|163786898|ref|ZP_02181346.1| ribosome-binding factor A [Flavobacteriales bacterium ALC-1]
gi|159878758|gb|EDP72814.1| ribosome-binding factor A [Flavobacteriales bacterium ALC-1]
Length = 130
Score = 92.3 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 56/118 (47%), Gaps = 2/118 (1%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
S R ++ ++ L+ V+ + + +IS+S+V ++VDL +A VY+S+ +
Sbjct: 1 MESNRQKKIAGILQQDLVDVLQR-AASEGGLKGVIISVSKVSVTVDLSMAKVYLSIFPNK 59
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRN-LRYVPELRFRYDTSLQSYWKLNALMCLPKIP 123
++ + N IR + + R+ LR +P+L F D SL+ + + P
Sbjct: 60 EAQPLLEGIRSNKPLIRHELSQRTRHQLRRMPQLEFFIDDSLEYIDGIERSLKGEDDP 117
>gi|328885409|emb|CCA58648.1| Ribosome-binding factor A [Streptomyces venezuelae ATCC 10712]
Length = 146
Score = 92.3 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 21/108 (19%), Positives = 48/108 (44%), Gaps = 4/108 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-DVSPD 69
RA ++ + +R + + +D + ++I++ ++ DLR ATV+ ++ D
Sbjct: 6 RAKKLADLIREVVAEKLQRG-IKDPRLGTH-VTITDTRVTGDLREATVFYTVYGDDEERA 63
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ L +R +GR+ ++ P L F D ++ + L+
Sbjct: 64 SAAAGLESAKGILRSAVGRA-AGTKFTPTLSFVADALPENAKTIEDLL 110
>gi|21673081|ref|NP_661146.1| ribosome-binding factor A [Chlorobium tepidum TLS]
gi|25453243|sp|Q8KFT0|RBFA_CHLTE RecName: Full=Ribosome-binding factor A
gi|21646152|gb|AAM71488.1| ribosome-binding factor A [Chlorobium tepidum TLS]
Length = 120
Score = 92.3 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 56/122 (45%), Gaps = 6/122 (4%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVS 67
S R +V ++ L + E + S +++++EV M+ DL +A VY+S + +
Sbjct: 2 SIRTDKVSSLLQRELSAIF---EKELPR-SGPLVTVTEVRMTADLGIARVYVSVIGSEAQ 57
Query: 68 PDRVISALNCNIKFIRGRIGRSLRN-LRYVPELRFRYDTSLQSYWKLNALMCLPKIPVAL 126
V+ L+ K IR + +R+ R +PEL F D + ++ L+ K
Sbjct: 58 RAEVMEYLDAENKMIRKTLSAKIRHQFRRIPELEFYEDRLFEQANRIEQLLKSVKPARDE 117
Query: 127 EK 128
E+
Sbjct: 118 EQ 119
>gi|86135202|ref|ZP_01053784.1| Ribosome-binding factor A [Polaribacter sp. MED152]
gi|85822065|gb|EAQ43212.1| Ribosome-binding factor A [Polaribacter sp. MED152]
Length = 131
Score = 92.3 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 27/113 (23%), Positives = 55/113 (48%), Gaps = 3/113 (2%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
+ + R ++ ++ L+ V+ + +IS+S+V ++ DL VA VY+S+
Sbjct: 2 EETNRQRKIAGVLQKDLVDVLQKAAQD--GMKGVIISVSKVHVTSDLGVAKVYLSVFPSE 59
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRN-LRYVPELRFRYDTSLQSYWKLNALMC 118
D ++ + N IR + + +N LR +PEL F D +L +++ +
Sbjct: 60 KRDELVKGVQSNTVLIRHEMAKRTKNQLRRMPELLFFGDDTLDYLEEIDKSLS 112
>gi|152965413|ref|YP_001361197.1| ribosome-binding factor A [Kineococcus radiotolerans SRS30216]
gi|189039545|sp|A6W7Z4|RBFA_KINRD RecName: Full=Ribosome-binding factor A
gi|151359930|gb|ABS02933.1| ribosome-binding factor A [Kineococcus radiotolerans SRS30216]
Length = 171
Score = 91.9 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 19/110 (17%), Positives = 48/110 (43%), Gaps = 5/110 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-DVSPD 69
RA ++ + ++ + + +D + ++I++ ++ DL+ AT++ ++ D
Sbjct: 6 RARKLADRIKVIVADALEKR-VKDPRLG--FVTITDARVTNDLQHATLFYTVFGSDEEKQ 62
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
AL +R +G+ +R P L F D ++ ++ L+
Sbjct: 63 GTALALESAKGVLRSEVGKR-TGIRLTPTLTFTLDEVPETATQIQDLLKQ 111
>gi|88607832|ref|YP_505050.1| ribosome-binding factor A [Anaplasma phagocytophilum HZ]
gi|88598895|gb|ABD44365.1| ribosome-binding factor A [Anaplasma phagocytophilum HZ]
Length = 118
Score = 91.9 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 34/110 (30%), Positives = 61/110 (55%), Gaps = 6/110 (5%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDVSP 68
R+L+V ++ AL + L EF D +IS+SEV + DLR AT+++ + V
Sbjct: 10 HRSLKVSSVLKKALSELFLR-EFYD---LSTLISVSEVKVGEDLRNATIFVVVRGKGVDG 65
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
D ++ ALN + +R + + L+ LRYVP L F+ D +++ +++ +
Sbjct: 66 DEIVRALNASSNVVRKSVFKYLK-LRYVPRLHFKLDVEFENFLRISDALA 114
>gi|227497558|ref|ZP_03927786.1| ribosome-binding factor [Actinomyces urogenitalis DSM 15434]
gi|226832981|gb|EEH65364.1| ribosome-binding factor [Actinomyces urogenitalis DSM 15434]
Length = 157
Score = 91.9 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 23/95 (24%), Positives = 46/95 (48%), Gaps = 5/95 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV-SPD 69
RA +V + + + +L +D + I+I++V ++ DL+ ATV+ ++
Sbjct: 6 RARKVADRIHQTVAR-LLQGRIKDPRLG--FITITDVRVTGDLQQATVFYTVYGSQRERR 62
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYD 104
+AL IR +G++L +R P + F+ D
Sbjct: 63 DTAAALRSATGLIRSEVGKAL-GIRLTPSIAFQLD 96
>gi|168704067|ref|ZP_02736344.1| probable ribosome-binding factor A [Gemmata obscuriglobus UQM 2246]
Length = 163
Score = 91.9 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 26/121 (21%), Positives = 53/121 (43%), Gaps = 5/121 (4%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
S R RV E VR IL E +D + ++++ +S DL+ A V++S+
Sbjct: 3 SHRLARVSEVVRETAANAILF-EIKDPRVKN--VTVTRAEVSADLQHAKVFVSVMGSEKE 59
Query: 69 DR-VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALE 127
+ L +++ +I L + RYVP + F D ++ ++ ++ + +
Sbjct: 60 QSLTMHGLKSAAAYVQTKIADRLTS-RYVPHVTFILDEGVKKSIEIARIIREENERLEAD 118
Query: 128 K 128
+
Sbjct: 119 R 119
>gi|282857791|ref|ZP_06267000.1| ribosome-binding factor A [Pyramidobacter piscolens W5455]
gi|282584461|gb|EFB89820.1| ribosome-binding factor A [Pyramidobacter piscolens W5455]
Length = 131
Score = 91.9 bits (228), Expect = 3e-17, Method: Composition-based stats.
Identities = 25/109 (22%), Positives = 54/109 (49%), Gaps = 4/109 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
R R+ +++ + +IL+ E +D ++ + ++ V S DL+ A VY + +
Sbjct: 5 RMGRINSQLQREIS-LILSREVRDEKLAEVI--VTSVECSKDLKYAKVYYTTLREEGRAE 61
Query: 71 VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ L ++R +G + + R VPEL FR+D S + +++ ++
Sbjct: 62 IAKLLEKVSGYVRSSLG-RVLSYRTVPELTFRFDDSEELAREMDRVLDR 109
>gi|307111428|gb|EFN59662.1| hypothetical protein CHLNCDRAFT_12877 [Chlorella variabilis]
Length = 128
Score = 91.9 bits (228), Expect = 3e-17, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 59/122 (48%), Gaps = 13/122 (10%)
Query: 10 RRALRVGEEVRSALMWVILNNE-----FQDRLISR------DVISISEVCMSVDLRVATV 58
RR +V +++ + ++++++ + S++EV +S DL+VA V
Sbjct: 5 RRVAKVAKQIEREVGQLLISDKTMQAAVCPERRRGFDGALSALASVTEVHISNDLQVAKV 64
Query: 59 YISLPLDV-SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
Y+S+ D + I L ++R IG+ +R LR PE+RF D S++ ++ L+
Sbjct: 65 YLSIYSDDVGKEVAIEGLQRLEGYVRKHIGKQIR-LRLTPEIRFVRDDSIERSERILKLL 123
Query: 118 CL 119
Sbjct: 124 DQ 125
>gi|148269217|ref|YP_001243677.1| ribosome-binding factor A [Thermotoga petrophila RKU-1]
gi|281411515|ref|YP_003345594.1| ribosome-binding factor A [Thermotoga naphthophila RKU-10]
gi|166199572|sp|A5IIS8|RBFA_THEP1 RecName: Full=Ribosome-binding factor A
gi|147734761|gb|ABQ46101.1| ribosome-binding factor A [Thermotoga petrophila RKU-1]
gi|281372618|gb|ADA66180.1| ribosome-binding factor A [Thermotoga naphthophila RKU-10]
Length = 131
Score = 91.9 bits (228), Expect = 3e-17, Method: Composition-based stats.
Identities = 30/108 (27%), Positives = 51/108 (47%), Gaps = 4/108 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD-VSPD 69
R + E++ LM + +D + +D ++ S V +S D R A VY+S
Sbjct: 6 RKAMLESEIQKLLMEALQQ--LRDPRLKKDFVTFSRVELSKDKRYADVYVSFLGTPEERK 63
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ LN F R I ++LR L PE+RF D +++ K++ L+
Sbjct: 64 ETVEILNRAKGFFRTFISKNLR-LYVAPEIRFYEDKGIEASVKVHQLL 110
>gi|32473743|ref|NP_866737.1| ribosome-binding factor A [Rhodopirellula baltica SH 1]
gi|39931771|sp|Q7URR1|RBFA_RHOBA RecName: Full=Ribosome-binding factor A
gi|32444279|emb|CAD74277.1| probable ribosome-binding factor A [Rhodopirellula baltica SH 1]
gi|327542472|gb|EGF28951.1| ribosome-binding factor A [Rhodopirellula baltica WH47]
Length = 137
Score = 91.9 bits (228), Expect = 3e-17, Method: Composition-based stats.
Identities = 27/114 (23%), Positives = 56/114 (49%), Gaps = 5/114 (4%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
+SRR L+ E +R + I+ E +D + +++ V +S D+R A V +S+ D
Sbjct: 1 MSSRRLLKAAEAIREVVANAIV-TEVRDPRVRD--VTVIGVEVSPDMREAKVKVSVMGDE 57
Query: 67 SPDRV-ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ + + L + F++ +I + RY P+LRF D ++ ++ ++
Sbjct: 58 TQKNLSLRGLQNSAGFLQSKIANRMDT-RYTPKLRFEVDRGQENAMTVSEILAR 110
>gi|254525665|ref|ZP_05137717.1| ribosome-binding factor A [Prochlorococcus marinus str. MIT 9202]
gi|221537089|gb|EEE39542.1| ribosome-binding factor A [Prochlorococcus marinus str. MIT 9202]
Length = 130
Score = 91.6 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 58/117 (49%), Gaps = 3/117 (2%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS 67
N+ R +V ++ + +IL N+ ++ LI ++IS++ +S DL+ +YI+
Sbjct: 3 NNYRLAKVSSLLKKEIT-LILQNDLENDLIRDHFVNISKIDLSGDLQHCKIYITSTAQEK 61
Query: 68 -PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIP 123
++S LN FIR +G+ + +R VPE+ F+ D L + L+ K
Sbjct: 62 VRKEIVSNLNTAKSFIRHSLGKRI-EMRRVPEIIFKEDVVLDKGLSVLKLLDELKNK 117
>gi|295395373|ref|ZP_06805572.1| ribosome-binding factor A [Brevibacterium mcbrellneri ATCC 49030]
gi|294971695|gb|EFG47571.1| ribosome-binding factor A [Brevibacterium mcbrellneri ATCC 49030]
Length = 145
Score = 91.6 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 24/112 (21%), Positives = 54/112 (48%), Gaps = 5/112 (4%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS 67
+S RA ++ + ++ + + +D + I++++V ++ DL+ ATV+ ++ D
Sbjct: 3 DSTRARKIADRIKVIVAQTLEKR-VKDPRLG--FITVTDVRVTGDLQNATVFYTVFGDDD 59
Query: 68 P-DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+AL+ IR +G+ L +R P L F D+ + +L+ +
Sbjct: 60 QLAATKAALDSAKGLIRSEVGKGL-QIRLTPSLEFVADSVPAAAAELDTFIA 110
>gi|167751256|ref|ZP_02423383.1| hypothetical protein EUBSIR_02242 [Eubacterium siraeum DSM 15702]
gi|167655763|gb|EDR99892.1| hypothetical protein EUBSIR_02242 [Eubacterium siraeum DSM 15702]
gi|291556764|emb|CBL33881.1| ribosome-binding factor A [Eubacterium siraeum V10Sc8a]
Length = 126
Score = 91.6 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 21/108 (19%), Positives = 49/108 (45%), Gaps = 4/108 (3%)
Query: 12 ALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP-LDVSPDR 70
R+ E+++ + + + +D + + ++ +S ++ DL VYI+ +
Sbjct: 6 TARLAEDIKREISTAM--RDIKDGAVVKAMVGVSRCELTSDLSYCKVYITTLEGGDTTKN 63
Query: 71 VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
V L F + RI ++ +R +P+L F D S+ Y ++ ++
Sbjct: 64 VAEHLKKAEGFFKRRINERVK-MRKLPQLIFVPDNSMDYYEHISEVIS 110
>gi|291531682|emb|CBK97267.1| ribosome-binding factor A [Eubacterium siraeum 70/3]
Length = 126
Score = 91.6 bits (227), Expect = 4e-17, Method: Composition-based stats.
Identities = 21/108 (19%), Positives = 49/108 (45%), Gaps = 4/108 (3%)
Query: 12 ALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP-LDVSPDR 70
R+ E+++ + + + +D + + ++ +S ++ DL VYI+ +
Sbjct: 6 TARLAEDIKREISTAM--RDIKDGAVVKAMVGVSRCELTSDLSYCKVYITTLEGGDTTKN 63
Query: 71 VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
V L F + RI ++ +R +P+L F D S+ Y ++ ++
Sbjct: 64 VAEHLKKAEGFFKRRINERVK-MRKLPQLIFVPDNSMDYYEHISEVIS 110
>gi|3096942|emb|CAA18852.1| putative protein [Arabidopsis thaliana]
gi|7270424|emb|CAB80190.1| putative protein [Arabidopsis thaliana]
Length = 200
Score = 91.2 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 32/128 (25%), Positives = 58/128 (45%), Gaps = 27/128 (21%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQ------------DRLISRDVISISEVCMSVDLRVA- 56
RR V +++ L ++L + DR +S + +IS+V +S DL+V
Sbjct: 23 RRVKMVAKQIMRELSDMLLTDTVLQHAVLPEAALGADRYLSS-LTTISDVEVSNDLQVMR 81
Query: 57 -----------TVYISLPLDVSPDRV-ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYD 104
VY+S+ D V I+ L K++R +G+ ++ LR PE+RF D
Sbjct: 82 NPNWKLLCNVVKVYVSVFGDDRGKDVAIAGLKSKAKYVRSELGKRMK-LRLTPEVRFIED 140
Query: 105 TSLQSYWK 112
+++ +
Sbjct: 141 EAMERGSR 148
>gi|332295454|ref|YP_004437377.1| Ribosome-binding factor A [Thermodesulfobium narugense DSM 14796]
gi|332178557|gb|AEE14246.1| Ribosome-binding factor A [Thermodesulfobium narugense DSM 14796]
Length = 112
Score = 91.2 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 31/114 (27%), Positives = 59/114 (51%), Gaps = 5/114 (4%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS- 67
S +A R+ E +R L ++ E +D I + ++SI E+ MS D + V++S+ D
Sbjct: 2 SVKAERLKETIRKELAVLLY--ELKDVRI-KSMVSIMELDMSSDHKNIKVWVSIYGDEKS 58
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+ + L +F+RG + R + L+Y P++ F D SL+ K+ ++ +
Sbjct: 59 KEETMKGLVSASRFLRGELARRI-GLKYAPQILFAIDNSLERGDKIFEILKKIE 111
>gi|269956012|ref|YP_003325801.1| ribosome-binding factor A [Xylanimonas cellulosilytica DSM 15894]
gi|269304693|gb|ACZ30243.1| ribosome-binding factor A [Xylanimonas cellulosilytica DSM 15894]
Length = 147
Score = 91.2 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 23/121 (19%), Positives = 56/121 (46%), Gaps = 6/121 (4%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDV 66
+ RA R+ + ++ + ++ + +D + +++++V ++ DL++A+V+ ++ D
Sbjct: 4 ENPRAKRLADRIKVIVAQML-DTRIKDPRLG--FVTVTDVRVTGDLQMASVFYTVYGSDE 60
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVAL 126
+AL IR +G+ +R P + F DT ++ L A + +
Sbjct: 61 ERAGTAAALESAKGLIRSEVGKQ-TGIRLTPTIEFHLDTVPETSAHLTAALDEAR-RRDE 118
Query: 127 E 127
E
Sbjct: 119 E 119
>gi|15639875|ref|NP_219325.1| ribosome-binding factor A (rbfA) [Treponema pallidum subsp.
pallidum str. Nichols]
gi|189026113|ref|YP_001933885.1| ribosome-binding factor A [Treponema pallidum subsp. pallidum SS14]
gi|6093904|sp|O83860|RBFA_TREPA RecName: Full=Ribosome-binding factor A
gi|238689350|sp|B2S4C7|RBFA_TREPS RecName: Full=Ribosome-binding factor A
gi|3323207|gb|AAC26580.1| ribosome-binding factor A (rbfA) [Treponema pallidum subsp.
pallidum str. Nichols]
gi|189018688|gb|ACD71306.1| ribosome-binding factor A [Treponema pallidum subsp. pallidum SS14]
gi|291060249|gb|ADD72984.1| ribosome-binding factor A [Treponema pallidum subsp. pallidum str.
Chicago]
Length = 126
Score = 91.2 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 30/111 (27%), Positives = 55/111 (49%), Gaps = 7/111 (6%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV-SPD 69
R ++GE +R+ + +I+ + +D +S +S++ V +S + A VY+S +
Sbjct: 8 RVRKLGEHIRAEIAQLIMLGKIKDPRVSP-FLSVNWVDVSGGMVCARVYVSSFMGKYKTK 66
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSY----WKLNAL 116
+ + L FIR + + LR LR P L F YD S++ K++ L
Sbjct: 67 QGVQGLESAAGFIRSVLAKKLR-LRQCPRLSFVYDESVRDGFSLSRKIDRL 116
>gi|85057849|ref|YP_456765.1| ribosome-binding factor A [Aster yellows witches'-broom phytoplasma
AYWB]
gi|84789954|gb|ABC65686.1| ribosome-binding factor A [Aster yellows witches'-broom phytoplasma
AYWB]
Length = 113
Score = 91.2 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 27/110 (24%), Positives = 54/110 (49%), Gaps = 6/110 (5%)
Query: 12 ALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP--D 69
+ R+ ++ L V++N+ QD I I++++V ++ DL A VY ++ D
Sbjct: 5 SERLSSLIQKEL--VLINDVIQDEQIGY--INLTDVKVTKDLSFANVYYTILSDDPAVLK 60
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ N IR + + ++N R +P+L F+YD SL ++ ++
Sbjct: 61 LTEETIEQNKVVIRFELAKKIKNFRKIPDLVFKYDKSLSYGRRIENILKD 110
>gi|119025373|ref|YP_909218.1| ribosome-binding factor A [Bifidobacterium adolescentis ATCC 15703]
gi|154486784|ref|ZP_02028191.1| hypothetical protein BIFADO_00610 [Bifidobacterium adolescentis
L2-32]
gi|182676537|sp|A1A0A3|RBFA_BIFAA RecName: Full=Ribosome-binding factor A
gi|118764957|dbj|BAF39136.1| ribosome-binding factor A [Bifidobacterium adolescentis ATCC 15703]
gi|154084647|gb|EDN83692.1| hypothetical protein BIFADO_00610 [Bifidobacterium adolescentis
L2-32]
Length = 167
Score = 91.2 bits (226), Expect = 5e-17, Method: Composition-based stats.
Identities = 25/127 (19%), Positives = 53/127 (41%), Gaps = 10/127 (7%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
+ RA R+ ++ + + + D+ ++ ++I+EV ++ DL++A VY +
Sbjct: 2 AGTNPRAARIAALIQRVIASS-MEAQLHDKRLAN--VTITEVRVTNDLQIAKVYWTQLGH 58
Query: 66 VSPDR-----VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
++ ALN +R +G LR P+L F +D ++ ++ L
Sbjct: 59 EGHEQGERRRAQQALNQAKGRLRSLVGTK-AGLRLTPQLEFIFDEVPGEAHEIEDILALA 117
Query: 121 KIPVALE 127
E
Sbjct: 118 H-KRDEE 123
>gi|325105758|ref|YP_004275412.1| ribosome-binding factor A [Pedobacter saltans DSM 12145]
gi|324974606|gb|ADY53590.1| ribosome-binding factor A [Pedobacter saltans DSM 12145]
Length = 119
Score = 90.8 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 22/112 (19%), Positives = 49/112 (43%), Gaps = 3/112 (2%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
S+R + ++ L LI +I++++V + DL + V++S
Sbjct: 1 MESKRQQKFARVIQKDLGEYFQREANH--LIPNSMITVTKVRATPDLGMVRVFLSFFNVP 58
Query: 67 SPDRVISALNCNIKFIRGRIGRSLR-NLRYVPELRFRYDTSLQSYWKLNALM 117
+ I ++ IR +G+ ++ ++ VP+L F D + + K++ L
Sbjct: 59 NTAEAIKSIKARASEIRYLLGKKIKDQVKSVPQLEFFVDDTNEYVDKMDKLF 110
>gi|256832252|ref|YP_003160979.1| ribosome-binding factor A [Jonesia denitrificans DSM 20603]
gi|256685783|gb|ACV08676.1| ribosome-binding factor A [Jonesia denitrificans DSM 20603]
Length = 153
Score = 90.8 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 24/118 (20%), Positives = 54/118 (45%), Gaps = 6/118 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV-SPD 69
RA R+ E ++ + ++ +D + ++I++V ++ DL+ A+++ ++ D
Sbjct: 6 RARRLAERIQVIVAEML-EGRIKDPRLG--FVTITDVRVTGDLQHASIFYTVYGDEQERR 62
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALE 127
+ ALN IR +G+ + R P + F D +S L+ + ++ E
Sbjct: 63 KSTRALNSARGTIRTEVGKQIGT-RLTPTIEFHLDAVPESAASLDRALHEARL-RDAE 118
>gi|302554526|ref|ZP_07306868.1| ribosome-binding factor A [Streptomyces viridochromogenes DSM
40736]
gi|302472144|gb|EFL35237.1| ribosome-binding factor A [Streptomyces viridochromogenes DSM
40736]
Length = 166
Score = 90.8 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 22/108 (20%), Positives = 48/108 (44%), Gaps = 4/108 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-DVSPD 69
RA R+ + +R + + +D + ++I++ ++ DLR ATV+ ++ D
Sbjct: 22 RAKRLADLIREVVAQKLQRG-IKDPRLGSH-VTITDTRVTGDLREATVFYTVYGDDEERA 79
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ L +R +GR+ +++ P L F D + + L+
Sbjct: 80 AAAAGLESAKGILRSEVGRA-AGVKFTPTLTFVMDALPDTARNIEDLL 126
>gi|297191719|ref|ZP_06909117.1| ribosome-binding factor A [Streptomyces pristinaespiralis ATCC
25486]
gi|197721425|gb|EDY65333.1| ribosome-binding factor A [Streptomyces pristinaespiralis ATCC
25486]
Length = 156
Score = 90.8 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 20/108 (18%), Positives = 47/108 (43%), Gaps = 4/108 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-DVSPD 69
RA ++ + +R + + +D + ++I++ ++ DLR ATV+ ++ D
Sbjct: 15 RAKKLADLIREVVAEKLQRG-IKDPRLGSH-VTITDTRVTGDLREATVFYTVYGDDEDRA 72
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ L +R +G + ++ P L F D ++ + L+
Sbjct: 73 SAAAGLQSAKGILRSAVGAA-AGTKFTPTLTFVADALPENAKTIEDLL 119
>gi|171913141|ref|ZP_02928611.1| ribosome-binding factor A [Verrucomicrobium spinosum DSM 4136]
Length = 163
Score = 90.8 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 58/121 (47%), Gaps = 7/121 (5%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
+ R RV E ++ L ++ N + V++I EV ++ DL+ +Y+ +
Sbjct: 14 NHRLARVRELIKRELGPIVDRNF----TFAGSVVTIHEVDVTPDLKQCFIYVGILGKEHA 69
Query: 69 D-RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM-CLPKIPVAL 126
++ LN N I+ + + + L+ P L F+YDTS++ ++ AL+ LP+
Sbjct: 70 APNIVRKLNENRGLIQRELFKRV-ILKNSPSLTFKYDTSIERGVRVLALIETLPEPLPDE 128
Query: 127 E 127
E
Sbjct: 129 E 129
>gi|257463894|ref|ZP_05628280.1| ribosome-binding factor A [Fusobacterium sp. D12]
gi|317061423|ref|ZP_07925908.1| ribosome-binding factor A [Fusobacterium sp. D12]
gi|313687099|gb|EFS23934.1| ribosome-binding factor A [Fusobacterium sp. D12]
Length = 122
Score = 90.8 bits (225), Expect = 6e-17, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 63/120 (52%), Gaps = 11/120 (9%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL----- 64
+R + +E+ + V+L +E ++ I R ++S+++V ++ DL+ A Y S+
Sbjct: 4 QRLAGIEKEISRVISSVLL-SEIKNPNI-RGLVSVTKVRVTEDLKFADTYFSIMPPIASE 61
Query: 65 ---DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+ ++++ AL F+R RI + NLR++PE+R + D S++ + L+ K
Sbjct: 62 GQKTIEREKILEALEEVRGFLRKRIAEEI-NLRFIPEIRVKLDDSIEHAIHITKLLNDLK 120
>gi|311898677|dbj|BAJ31085.1| putative ribosome-binding factor A [Kitasatospora setae KM-6054]
Length = 145
Score = 90.8 bits (225), Expect = 6e-17, Method: Composition-based stats.
Identities = 21/108 (19%), Positives = 50/108 (46%), Gaps = 5/108 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV-SPD 69
RA ++ + ++ + + +D + ++I++ ++ DLR ATV+ ++ D +
Sbjct: 6 RARKLADRIQVVVAETLQRR-IKDPRLGY--VTITDARVTGDLREATVFYTVYGDETERE 62
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+AL +R +G+ +R+ P L F D + ++ L+
Sbjct: 63 SSAAALESAKGILRSEVGKQ-TGVRFTPTLTFVADALPDNAKNIDDLL 109
>gi|148244227|ref|YP_001218921.1| ribosome-binding factor A [Candidatus Vesicomyosocius okutanii HA]
gi|172047244|sp|A5CXX7|RBFA_VESOH RecName: Full=Ribosome-binding factor A
gi|146326054|dbj|BAF61197.1| ribosome-binding factor A [Candidatus Vesicomyosocius okutanii HA]
Length = 114
Score = 90.8 bits (225), Expect = 6e-17, Method: Composition-based stats.
Identities = 26/110 (23%), Positives = 54/110 (49%), Gaps = 5/110 (4%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
S R R+ E +R L ++L +D + +I+ +V +S DL A V+ ++
Sbjct: 8 SYRVERINELIRRELT-LLLRTSIKDPRLRDMIIT--DVLISRDLSSAKVFYTVIK-EDK 63
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ L+ F R + +++ +LR+ P LRF +D++ + ++ L+
Sbjct: 64 KMIEPLLDKASGFFRIHLSKTI-DLRHTPVLRFIFDSAPNTGARIEQLLS 112
>gi|32307616|gb|AAP79213.1| ribosome-binding factor A [Bigelowiella natans]
Length = 198
Score = 90.8 bits (225), Expect = 6e-17, Method: Composition-based stats.
Identities = 35/121 (28%), Positives = 57/121 (47%), Gaps = 13/121 (10%)
Query: 10 RRALRVGEEVRSALMWVILNN---------EFQDRLISRDVI-SISEVCMSVDLRVATVY 59
RR RVG E++ + +++N+ ++ D I I S++EV MS DL VA +Y
Sbjct: 65 RRIGRVGREIQREMGDLLVNDRNVLAAIDPKYDDDDIRNMTIASVTEVQMSRDLSVAKLY 124
Query: 60 ISLPLDVSP--DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ ++ LN +IR + + L NLR PEL F D +L ++ +M
Sbjct: 125 LMFSGGTKKSYQPILDRLNAKKGYIRRVVSQRL-NLRRSPELVFYEDNTLNEADEMKRIM 183
Query: 118 C 118
Sbjct: 184 A 184
>gi|119717413|ref|YP_924378.1| ribosome-binding factor A [Nocardioides sp. JS614]
gi|171704652|sp|A1SLK6|RBFA_NOCSJ RecName: Full=Ribosome-binding factor A
gi|119538074|gb|ABL82691.1| ribosome-binding factor A [Nocardioides sp. JS614]
Length = 162
Score = 90.8 bits (225), Expect = 6e-17, Method: Composition-based stats.
Identities = 19/116 (16%), Positives = 53/116 (45%), Gaps = 7/116 (6%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
R ++ + ++ + ++ +D + +++++V +S D + AT++ ++ +
Sbjct: 5 RIRKIADRIQVVVAEMLERR-IKDPRLG--FVTVTDVRVSGDSQQATIFYTVLGEDDEAA 61
Query: 71 VIS---ALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIP 123
+ AL +R + + L +R+ P L F +D +S +L+ ++ K
Sbjct: 62 RTASAVALESAKGLLRSEVAKQL-GMRHAPTLEFVHDALPESARQLDEVLARAKAQ 116
>gi|73667085|ref|YP_303101.1| ribosome-binding factor A [Ehrlichia canis str. Jake]
gi|72394226|gb|AAZ68503.1| ribosome-binding factor A [Ehrlichia canis str. Jake]
Length = 115
Score = 90.8 bits (225), Expect = 6e-17, Method: Composition-based stats.
Identities = 34/110 (30%), Positives = 58/110 (52%), Gaps = 5/110 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD-VSPD 69
R L+V + A+ V++ + L + +I+IS+V +S D+R A V+I + D +
Sbjct: 9 RNLKVASVLNRAISKVLMQDIC---LSNNHLITISKVEVSNDIRNANVFIIISQDCTDKE 65
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
VI LN + FIR I + +LRY+P L F+ D + K+N ++
Sbjct: 66 AVIKELNDSSYFIRKAIFPYV-DLRYIPRLYFKQDYCFDNLVKINQILES 114
>gi|210633992|ref|ZP_03297941.1| hypothetical protein COLSTE_01859 [Collinsella stercoris DSM 13279]
gi|210158990|gb|EEA89961.1| hypothetical protein COLSTE_01859 [Collinsella stercoris DSM 13279]
Length = 139
Score = 90.4 bits (224), Expect = 7e-17, Method: Composition-based stats.
Identities = 31/108 (28%), Positives = 53/108 (49%), Gaps = 5/108 (4%)
Query: 12 ALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRV 71
R+GE++R L +++L E D + +++++ V +S D A V++S D + V
Sbjct: 7 TRRLGEQLREKLGYILLF-EISDPRLE--LVTLTGVEVSQDRSFARVFVSCEGD-RYEEV 62
Query: 72 ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ ALN IR + RSL R PEL F+ D S ++ +
Sbjct: 63 LEALNTAKGRIRSLLARSLDW-RVTPELAFKIDRSTDEAEAISRALEN 109
>gi|325971222|ref|YP_004247413.1| ribosome-binding factor A [Spirochaeta sp. Buddy]
gi|324026460|gb|ADY13219.1| Ribosome-binding factor A [Spirochaeta sp. Buddy]
Length = 120
Score = 90.4 bits (224), Expect = 7e-17, Method: Composition-based stats.
Identities = 37/107 (34%), Positives = 58/107 (54%), Gaps = 3/107 (2%)
Query: 12 ALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPDR 70
R+ + A+ +I+ E ++ L+S + S+S V +SVD ATV+IS + D S
Sbjct: 6 QKRIEARLSEAISTLIVKGEIKNPLLST-LCSVSRVELSVDNAFATVFISSVLDDDSLHA 64
Query: 71 VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ AL FI+ R+G L+ R P L F+ D SL+ K+NAL+
Sbjct: 65 SVDALQKASGFIQKRVGAFLKT-RNTPVLTFKADVSLKEGQKINALI 110
>gi|284030874|ref|YP_003380805.1| ribosome-binding factor A [Kribbella flavida DSM 17836]
gi|283810167|gb|ADB32006.1| ribosome-binding factor A [Kribbella flavida DSM 17836]
Length = 143
Score = 90.4 bits (224), Expect = 7e-17, Method: Composition-based stats.
Identities = 21/109 (19%), Positives = 52/109 (47%), Gaps = 5/109 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV-SPD 69
RA ++ + ++ + ++ +D + +++++ ++ DLR A+V+ ++
Sbjct: 5 RAKQLADRIQVLVAELLERR-VKDPRLG--FVTVTDARLTGDLREASVFYTVYGGEQERA 61
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+AL IR +G++L LR+ P L F D ++ ++ L+
Sbjct: 62 STAAALESARGLIRSEVGKAL-GLRHTPSLAFFLDAVPENAGQIEELLA 109
>gi|229818206|ref|ZP_04448488.1| hypothetical protein BIFANG_03503 [Bifidobacterium angulatum DSM
20098]
gi|229784457|gb|EEP20571.1| hypothetical protein BIFANG_03503 [Bifidobacterium angulatum DSM
20098]
Length = 167
Score = 90.4 bits (224), Expect = 7e-17, Method: Composition-based stats.
Identities = 27/127 (21%), Positives = 55/127 (43%), Gaps = 10/127 (7%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL- 64
+ RA R+ ++ + + + D+ ++ I+I+EV ++ DL++A VY +
Sbjct: 2 AGTNPRAARIAALIQRVIASS-MEAQLHDKRLAN--ITITEVRVTNDLQLAKVYWTQLGH 58
Query: 65 ----DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
D R ALN +R +G LR P+L+F +D ++ ++ +
Sbjct: 59 EGHEDGERKRAQQALNQAKGRLRSLVGTK-AGLRLTPQLQFVFDEVPGEAHEIEDILAVA 117
Query: 121 KIPVALE 127
+ E
Sbjct: 118 R-KRDEE 123
>gi|229815171|ref|ZP_04445507.1| hypothetical protein COLINT_02216 [Collinsella intestinalis DSM
13280]
gi|229809181|gb|EEP44947.1| hypothetical protein COLINT_02216 [Collinsella intestinalis DSM
13280]
Length = 143
Score = 90.4 bits (224), Expect = 8e-17, Method: Composition-based stats.
Identities = 31/108 (28%), Positives = 54/108 (50%), Gaps = 5/108 (4%)
Query: 12 ALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRV 71
R+GE++R L +++L E D + D+++++ V ++ D A VY+S D + V
Sbjct: 7 TRRLGEQLREKLGYILLF-EIADPRL--DLVTLTGVEVAQDRSFARVYVSCDGD-RYEEV 62
Query: 72 ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ ALN IR + R+L R PEL F+ D S ++ +
Sbjct: 63 LEALNAAKGRIRSLLARALDW-RVTPELAFQIDRSTDEAEAISRALEN 109
>gi|33860672|ref|NP_892233.1| ribosome-binding factor A [Prochlorococcus marinus subsp. pastoris
str. CCMP1986]
gi|39931780|sp|Q7V3G3|RBFA_PROMP RecName: Full=Ribosome-binding factor A
gi|33633614|emb|CAE18571.1| Ribosome-binding factor A [Prochlorococcus marinus subsp. pastoris
str. CCMP1986]
Length = 132
Score = 90.4 bits (224), Expect = 8e-17, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 62/118 (52%), Gaps = 3/118 (2%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS 67
N+ R ++ ++ + +IL N+ ++ L+ + I+IS++ +S DL+ +YI+ + +
Sbjct: 3 NNYRIAKISSLLKKEIT-LILQNDLENDLLRSNFINISKIELSGDLQFCKIYITSTAEEA 61
Query: 68 -PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPV 124
++ LN +IR +G+ + +R VPE+ F+ DT L+ + L+ K
Sbjct: 62 IRKEIVEELNLAKTYIRHTLGQRI-EMRRVPEMTFKDDTVLEKGLSVLKLLAELKNKK 118
>gi|159036968|ref|YP_001536221.1| ribosome-binding factor A [Salinispora arenicola CNS-205]
gi|189039555|sp|A8M748|RBFA_SALAI RecName: Full=Ribosome-binding factor A
gi|157915803|gb|ABV97230.1| ribosome-binding factor A [Salinispora arenicola CNS-205]
Length = 156
Score = 90.4 bits (224), Expect = 8e-17, Method: Composition-based stats.
Identities = 27/109 (24%), Positives = 53/109 (48%), Gaps = 5/109 (4%)
Query: 12 ALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR- 70
R E VR L+ ++ ++ +D + +I+I++ ++ DLR ATV+ ++ D +
Sbjct: 7 VRRHAERVR-ELVASVVRSQIKDPRLG--MITITDARITADLRDATVFYTVLGDTAAQSG 63
Query: 71 VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+AL +R +G++L LR+ P L F D ++ L+
Sbjct: 64 TAAALESAKGMLRSTVGKAL-GLRHSPTLTFVLDDVQDQVKHIDDLLAQ 111
>gi|297626625|ref|YP_003688388.1| ribosome-binding factor A [Propionibacterium freudenreichii subsp.
shermanii CIRM-BIA1]
gi|296922390|emb|CBL56962.1| Ribosome-binding factor A [Propionibacterium freudenreichii subsp.
shermanii CIRM-BIA1]
Length = 146
Score = 90.0 bits (223), Expect = 9e-17, Method: Composition-based stats.
Identities = 25/110 (22%), Positives = 52/110 (47%), Gaps = 5/110 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP-D 69
R R+ +++R + ++ + +D + ++I++V ++ D R ATV+ ++
Sbjct: 5 RIARLQDQIRVIVAQMLQSR-IKDPRLG--FVTITDVRLTGDAREATVFYTVMGKEDDLV 61
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+AL +R +G+ L LRY P L F D + Q+ + L+
Sbjct: 62 ATAAALESAKGLLRSTVGKRL-GLRYAPTLDFVPDATSQTAQDMEELIAR 110
>gi|251772262|gb|EES52832.1| ribosome-binding factor A [Leptospirillum ferrodiazotrophum]
Length = 120
Score = 90.0 bits (223), Expect = 9e-17, Method: Composition-based stats.
Identities = 31/112 (27%), Positives = 55/112 (49%), Gaps = 4/112 (3%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS 67
RRA RV E+R + V+ F++ I+ ++I+ V +S DLR ATV+ ++
Sbjct: 6 GFRRADRVASEIREIMATVVARY-FREPRIAS--VTITRVRLSDDLRNATVFFAVFPGED 62
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
P + L + +R + R LR ++Y+P L F +D ++ +L
Sbjct: 63 PQSMGEILERHSPILRKEMARQLR-IKYIPRLSFVHDNGNDEEGRIESLFDQ 113
>gi|269468999|gb|EEZ80567.1| ribosome-binding factor A [uncultured SUP05 cluster bacterium]
Length = 112
Score = 90.0 bits (223), Expect = 1e-16, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 55/112 (49%), Gaps = 5/112 (4%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
+ S R R+ E +R L+ +L NE +D + +++++V S DL A V+ ++
Sbjct: 4 QPSYRVERINELIRRELVT-LLKNETKDPRL--QSVNVTDVLASRDLSSAKVFYTVAESE 60
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
V L F R R+ + + +LR+ P LRF +D + + ++ L+
Sbjct: 61 QI-IVEPLLIKASGFFRSRLSK-VLDLRHTPALRFIFDPAPNTGARIEDLLS 110
>gi|78189422|ref|YP_379760.1| ribosome-binding factor A [Chlorobium chlorochromatii CaD3]
gi|123579528|sp|Q3AQK8|RBFA_CHLCH RecName: Full=Ribosome-binding factor A
gi|78171621|gb|ABB28717.1| ribosome-binding factor A [Chlorobium chlorochromatii CaD3]
Length = 123
Score = 89.6 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 7/113 (6%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVS 67
SRR RV ++ L + + +++I EV ++VDL +A VYIS +
Sbjct: 2 SRRTERVASLLQHELGAIFQLELPRTP-----IVTIVEVKVTVDLGIARVYISTIGTPEE 56
Query: 68 PDRVISALNCNIKFIRGRIGRSLRN-LRYVPELRFRYDTSLQSYWKLNALMCL 119
+++ L K+IR + + +R+ R +PEL F D + + L+
Sbjct: 57 QAAIMAHLQEQNKYIRKLLSQRIRHQFRRIPELEFYEDHLYEHARHIEQLLSQ 109
>gi|39938637|ref|NP_950403.1| ribosome-binding factor A [Onion yellows phytoplasma OY-M]
gi|39721746|dbj|BAD04236.1| ribosome-binding factor A [Onion yellows phytoplasma OY-M]
Length = 113
Score = 89.6 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 28/110 (25%), Positives = 54/110 (49%), Gaps = 6/110 (5%)
Query: 12 ALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP--D 69
A R+ ++ L V++N+ QD I I++++V ++ DL A VY ++ D
Sbjct: 5 AERLSSLIQKEL--VLINDVIQDEQIGY--INLTDVKVTKDLSFANVYYTILSDDPTVLK 60
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ N IR + + ++N R +P+L F+YD SL ++ ++
Sbjct: 61 LTEETIEQNKVVIRLELAKKIKNFRKIPDLVFKYDKSLSYGRRIENILKD 110
>gi|193214187|ref|YP_001995386.1| ribosome-binding factor A [Chloroherpeton thalassium ATCC 35110]
gi|238692695|sp|B3QUN3|RBFA_CHLT3 RecName: Full=Ribosome-binding factor A
gi|193087664|gb|ACF12939.1| ribosome-binding factor A [Chloroherpeton thalassium ATCC 35110]
Length = 125
Score = 89.6 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 26/112 (23%), Positives = 47/112 (41%), Gaps = 6/112 (5%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS- 67
S R RV E ++ L + E + S + +I V ++ DL +A VY+S+
Sbjct: 2 SIRTERVAELIQRELSGIF---EKELPR-SGVLTTIVGVKITPDLSIARVYVSILGSKEM 57
Query: 68 PDRVISALNCNIKFIRGRIGRSLRN-LRYVPELRFRYDTSLQSYWKLNALMC 118
V++ + K R + +R+ + +P L F D +N L+
Sbjct: 58 GASVMAHIQKENKHFRKLLSSKIRHQFKRMPSLEFYQDDLFDQAAHINELIR 109
>gi|225351008|ref|ZP_03742031.1| hypothetical protein BIFPSEUDO_02589 [Bifidobacterium
pseudocatenulatum DSM 20438]
gi|225158464|gb|EEG71706.1| hypothetical protein BIFPSEUDO_02589 [Bifidobacterium
pseudocatenulatum DSM 20438]
Length = 167
Score = 89.6 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 24/127 (18%), Positives = 54/127 (42%), Gaps = 10/127 (7%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
+ RA R+ ++ + + + D+ ++ ++I+EV ++ DL++A VY +
Sbjct: 2 AGTNPRAARIAALIQRVIASS-MEAQLHDKRLAN--VTITEVRVTNDLQIAKVYWTQLGR 58
Query: 66 VSPDR-----VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
++ ALN +R +G LR P+L F +D ++ ++ +
Sbjct: 59 EGHEQGERRRAQQALNQAKGRLRSLVGTK-AGLRLTPQLEFVFDEVPGEAHEIEDILAIA 117
Query: 121 KIPVALE 127
+ E
Sbjct: 118 R-KRDEE 123
>gi|222100694|ref|YP_002535262.1| Ribosome-binding factor A [Thermotoga neapolitana DSM 4359]
gi|221573084|gb|ACM23896.1| Ribosome-binding factor A [Thermotoga neapolitana DSM 4359]
Length = 132
Score = 89.6 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 25/110 (22%), Positives = 50/110 (45%), Gaps = 4/110 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD-VSPD 69
R + E++ L + +D + ++ ++ S V +S D R A VY+S
Sbjct: 9 RKAMLESEIQKLLTEALQQ--LRDPRLKKEFVTFSRVELSKDKRYADVYVSFLGSPEERR 66
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ LN F R + ++L+ L PE+RF D +++ +++ L+
Sbjct: 67 EAVEILNRAKGFFRTYVAKNLK-LYVAPEIRFYEDKGIEASVRVHQLLNQ 115
>gi|212716577|ref|ZP_03324705.1| hypothetical protein BIFCAT_01505 [Bifidobacterium catenulatum DSM
16992]
gi|212660281|gb|EEB20856.1| hypothetical protein BIFCAT_01505 [Bifidobacterium catenulatum DSM
16992]
Length = 167
Score = 89.6 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 24/127 (18%), Positives = 54/127 (42%), Gaps = 10/127 (7%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
+ RA R+ ++ + + + D+ ++ ++I+EV ++ DL++A VY +
Sbjct: 2 AGTNPRAARIAALIQRVIASS-MEAQLHDKRLAN--VTITEVRVTNDLQIAKVYWTQLGR 58
Query: 66 VSPDR-----VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
++ ALN +R +G LR P+L F +D ++ ++ +
Sbjct: 59 EGHEQGERRRAQQALNQAKGRLRSLVGTK-AGLRLTPQLEFVFDEVPGEAHEIEDILAIA 117
Query: 121 KIPVALE 127
+ E
Sbjct: 118 R-KRDEE 123
>gi|227549054|ref|ZP_03979103.1| ribosome-binding factor A [Corynebacterium lipophiloflavum DSM
44291]
gi|227078836|gb|EEI16799.1| ribosome-binding factor A [Corynebacterium lipophiloflavum DSM
44291]
Length = 162
Score = 89.6 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 28/131 (21%), Positives = 63/131 (48%), Gaps = 10/131 (7%)
Query: 2 KNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS 61
K + ++ RA R+ +++++ + I E +D + ++++++ ++ DL ATVY +
Sbjct: 15 KGDDMADNSRAQRLAKQIQTIVASAIER-EVKDPRLE--LVTVTDARVTGDLHDATVYYT 71
Query: 62 LPL-----DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNAL 116
+ + D+ AL+ IR +G L N+R+ P + F DT ++ ++ L
Sbjct: 72 VRGRKISDEPDYDQAAEALHRARGQIRKIVGDQL-NVRFTPTVSFELDTVPEASARMEEL 130
Query: 117 MCLPKIPVALE 127
+ + E
Sbjct: 131 LNRAR-ARDAE 140
>gi|313206040|ref|YP_004045217.1| ribosome-binding factor a [Riemerella anatipestifer DSM 15868]
gi|312445356|gb|ADQ81711.1| ribosome-binding factor A [Riemerella anatipestifer DSM 15868]
gi|315022353|gb|EFT35381.1| Ribosome-binding factor A [Riemerella anatipestifer RA-YM]
gi|325336519|gb|ADZ12793.1| ribosome-binding factor A [Riemerella anatipestifer RA-GD]
Length = 119
Score = 89.6 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 23/110 (20%), Positives = 52/110 (47%), Gaps = 3/110 (2%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
S R ++ + ++ + + ++ +IS+S+V ++ DL +A +Y+S+
Sbjct: 1 MESNRQRKIAQIIQEDFSELFRKQAADSK--AQFLISVSDVKVTADLGIAKIYLSIFPQN 58
Query: 67 SPDRVISALNCNIKFIRGRIGRSL-RNLRYVPELRFRYDTSLQSYWKLNA 115
+ ++ + N R IG + + +R +P+L F DTSL ++
Sbjct: 59 YREAIMKEIEANKSQYRHFIGNKMAKQVRVIPQLSFYLDTSLDEVERIEK 108
>gi|262197034|ref|YP_003268243.1| ribosome-binding factor A [Haliangium ochraceum DSM 14365]
gi|262080381|gb|ACY16350.1| ribosome-binding factor A [Haliangium ochraceum DSM 14365]
Length = 150
Score = 89.2 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 59/122 (48%), Gaps = 6/122 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISR-DVISISEVCMSVDLRVATVYISL---PLDV 66
R RVG +R L ++ E +D + ++SI++V ++ DL VA +Y+S P
Sbjct: 6 RRQRVGNALREVLTELVAR-ELKDPRVHAAGLVSINQVELNRDLSVAFIYVSFVGAPDAR 64
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVAL 126
+ R + L F+RG R L+ L+ PELRF D ++ +L+ ++ A
Sbjct: 65 AEKRALDGLQAAAGFLRGPAARRLK-LQRAPELRFMDDPRGAFAEQMRSLVRDDEVRAAA 123
Query: 127 EK 128
+
Sbjct: 124 AQ 125
>gi|255535783|ref|YP_003096154.1| Ribosome-binding factor A [Flavobacteriaceae bacterium 3519-10]
gi|255341979|gb|ACU08092.1| Ribosome-binding factor A [Flavobacteriaceae bacterium 3519-10]
Length = 120
Score = 89.2 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 24/109 (22%), Positives = 52/109 (47%), Gaps = 3/109 (2%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS 67
S R +V + ++ L + + ++++S+V ++ DL +A VY+S+
Sbjct: 3 ESNRQRKVAQIIQQDLAELFRKQASDSK--QNFLVTVSDVKITADLSIAKVYLSIFPPAV 60
Query: 68 PDRVISALNCNIKFIRGRIGRSL-RNLRYVPELRFRYDTSLQSYWKLNA 115
V+ + N R IG+ + + +R +P+++F DT+L K+
Sbjct: 61 RAAVMKEIEQNTSAYRNFIGQKMGKQVRIIPDVKFYLDTTLDDVEKIEK 109
>gi|42523055|ref|NP_968435.1| hypothetical protein Bd1548 [Bdellovibrio bacteriovorus HD100]
gi|61215037|sp|Q6MMS5|RBFA_BDEBA RecName: Full=Ribosome-binding factor A
gi|39575260|emb|CAE79428.1| unnamed protein product [Bdellovibrio bacteriovorus HD100]
Length = 134
Score = 89.2 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 60/122 (49%), Gaps = 5/122 (4%)
Query: 4 KNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP 63
KN + RR RV E+++ + ++ F+ L +++++ V M DLR A VY+S+
Sbjct: 2 KNMGDGRRIARVEREIQATIAQFLIRG-FKTPLPG--LVTVASVKMPADLRAAKVYVSIL 58
Query: 64 LDVS-PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
D D + L I+ IG+ L+ +RY P+L F D + + K+ ++ ++
Sbjct: 59 GDEKQQDEALDLLQERAFEIQNYIGKELK-MRYCPKLTFYLDHATEQVLKVEKILHELEL 117
Query: 123 PV 124
Sbjct: 118 ER 119
>gi|78778501|ref|YP_396613.1| ribosome-binding factor A [Prochlorococcus marinus str. MIT 9312]
gi|123554790|sp|Q31D68|RBFA_PROM9 RecName: Full=Ribosome-binding factor A
gi|78712000|gb|ABB49177.1| ribosome-binding factor A [Prochlorococcus marinus str. MIT 9312]
Length = 130
Score = 89.2 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 59/117 (50%), Gaps = 3/117 (2%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS 67
N+ R +V ++ + +IL N+ ++ LI ++IS++ +S DL+ +YI+ +
Sbjct: 3 NNFRLAKVSSLLKKEIT-LILQNDLENDLIRDYFVNISKIDLSGDLQHCKIYITSTAKET 61
Query: 68 -PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIP 123
+++ LN FIR +G+ + +R VPE+ F+ D L + L+ K
Sbjct: 62 VRKEIVANLNTAKSFIRNNLGKRI-EMRRVPEIIFKEDIVLDKGLSVLKLLDELKNK 117
>gi|317471567|ref|ZP_07930914.1| ribosome-binding protein A [Anaerostipes sp. 3_2_56FAA]
gi|316900970|gb|EFV22937.1| ribosome-binding protein A [Anaerostipes sp. 3_2_56FAA]
Length = 79
Score = 89.2 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 19/80 (23%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 41 VISISEVCMSVDLRVATVYISLPLDVS-PDRVISALNCNIKFIRGRIGRSLRNLRYVPEL 99
+ S+ + ++ DL+ YIS+ D + ++ L + +IR + S+ NLR PE+
Sbjct: 1 MTSVVDAVVTSDLKQCKAYISVLGDQKAKEDTLNGLRSAVGYIRRELAHSI-NLRNTPEI 59
Query: 100 RFRYDTSLQSYWKLNALMCL 119
F D S++ +++ +
Sbjct: 60 TFILDDSIEYGVEMSKKLTS 79
>gi|94676893|ref|YP_589055.1| ribosome-binding factor A [Baumannia cicadellinicola str. Hc
(Homalodisca coagulata)]
gi|166218422|sp|Q1LSK9|RBFA_BAUCH RecName: Full=Ribosome-binding factor A
gi|94220043|gb|ABF14202.1| ribosome-binding factor A [Baumannia cicadellinicola str. Hc
(Homalodisca coagulata)]
Length = 134
Score = 89.2 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 57/117 (48%), Gaps = 11/117 (9%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL---- 64
R R+ E++ + + L + +D + + +IS V +S DL ATV++
Sbjct: 5 YSRKKRIAHEIQKKI-NISLQHNIRDPRLRKT--TISWVSVSHDLGSATVFVIFNGIQND 61
Query: 65 DVSPDRV---ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ + + + I L FIR +G+++ +LR VP+L F YD SL ++ L+
Sbjct: 62 NQTSEEIKKRIKTLQAASGFIRYLLGKTM-HLRIVPKLTFVYDQSLSHGIYIHELVN 117
>gi|257452232|ref|ZP_05617531.1| ribosome-binding factor A [Fusobacterium sp. 3_1_5R]
gi|257465973|ref|ZP_05630284.1| ribosome-binding factor A [Fusobacterium gonidiaformans ATCC 25563]
gi|315917129|ref|ZP_07913369.1| ribosome-binding factor A [Fusobacterium gonidiaformans ATCC 25563]
gi|317058775|ref|ZP_07923260.1| ribosome-binding factor A [Fusobacterium sp. 3_1_5R]
gi|313684451|gb|EFS21286.1| ribosome-binding factor A [Fusobacterium sp. 3_1_5R]
gi|313691004|gb|EFS27839.1| ribosome-binding factor A [Fusobacterium gonidiaformans ATCC 25563]
Length = 122
Score = 89.2 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 61/120 (50%), Gaps = 11/120 (9%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD---- 65
+R + +E+ + V+ +E ++ I R ++S+++V ++ DL+ A Y S+
Sbjct: 4 QRLAGIEKEISRVISSVLF-SEIKNPNI-RGLVSVTKVRVTEDLKFADTYFSIMPPIASE 61
Query: 66 ----VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
V ++++ AL F R RI + NLR+VPE+R + D S++ + L+ K
Sbjct: 62 GQKPVEREKILEALEEVRGFFRKRIAEEI-NLRFVPEVRVKLDDSIEHAIHITKLLNDLK 120
>gi|294815434|ref|ZP_06774077.1| Ribosome-binding factor A [Streptomyces clavuligerus ATCC 27064]
gi|326443786|ref|ZP_08218520.1| ribosome-binding factor A [Streptomyces clavuligerus ATCC 27064]
gi|294328033|gb|EFG09676.1| Ribosome-binding factor A [Streptomyces clavuligerus ATCC 27064]
Length = 147
Score = 89.2 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 21/112 (18%), Positives = 49/112 (43%), Gaps = 4/112 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
RA ++ + +R + + +D + ++I++ ++ DLR ATV+ ++ D
Sbjct: 6 RAKKLADLIREVVAEKLQRG-IKDPRLGTH-VTITDTRVTGDLREATVFYTVYGDDEARA 63
Query: 71 VISA-LNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+A L +R +G + ++ P L F D ++ + L+ +
Sbjct: 64 SAAAGLQSAKGVLRSAVGAA-AGTKFTPTLTFVADALPENARNIEDLLDQAR 114
>gi|157412469|ref|YP_001483335.1| ribosome-binding factor A [Prochlorococcus marinus str. MIT 9215]
gi|166918677|sp|A8G2B8|RBFA_PROM2 RecName: Full=Ribosome-binding factor A
gi|157387044|gb|ABV49749.1| Ribosome-binding factor A [Prochlorococcus marinus str. MIT 9215]
Length = 130
Score = 89.2 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 57/117 (48%), Gaps = 3/117 (2%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS 67
N+ R +V ++ + +IL NE + LIS ++IS++ +S DL+ +YI+
Sbjct: 3 NNYRLAKVSSLLKKEIT-LILQNELEIDLISDHFVNISKIDLSGDLQHCKIYITSTAQEK 61
Query: 68 -PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIP 123
++S LN IR +G+ + +R VPE+ F+ D L + L+ K
Sbjct: 62 VKKEIVSNLNTAKSSIRHSLGKRI-EMRRVPEIIFKDDVVLDKGLSVLKLLDELKNK 117
>gi|312880105|ref|ZP_07739905.1| ribosome-binding factor A [Aminomonas paucivorans DSM 12260]
gi|310783396|gb|EFQ23794.1| ribosome-binding factor A [Aminomonas paucivorans DSM 12260]
Length = 125
Score = 89.2 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 26/109 (23%), Positives = 50/109 (45%), Gaps = 4/109 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
R R+ E + ++L + ++ + V++ +V S DL A V+ + +
Sbjct: 5 RLERLNREFLREIS-LLLQSRIKNAQVHAAVLT--QVDCSKDLSHAKVFFTTLDPAEKEP 61
Query: 71 VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ AL +R +G+ +R LR +PEL F YD + + + AL+
Sbjct: 62 TLKALQDVAGLLRSCLGKQMR-LRKIPELHFYYDMTEERARSVEALLDS 109
>gi|126695467|ref|YP_001090353.1| ribosome-binding factor A [Prochlorococcus marinus str. MIT 9301]
gi|166219386|sp|A3PAH7|RBFA_PROM0 RecName: Full=Ribosome-binding factor A
gi|126542510|gb|ABO16752.1| Ribosome-binding factor A [Prochlorococcus marinus str. MIT 9301]
Length = 130
Score = 89.2 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 57/117 (48%), Gaps = 3/117 (2%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS 67
N+ R +V ++ + +IL N+ ++ LI ++IS++ +S DL+ +YI+ +
Sbjct: 3 NNYRLAKVSSLLKKEIT-LILQNDLENDLIRDHFVNISKIDLSGDLQHCKIYITSTAEEK 61
Query: 68 -PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIP 123
++ LN IR +G+ + +R VPE+ F+ D L + L+ K
Sbjct: 62 VRKEIVENLNTAKSSIRHSLGKRI-EMRRVPEIIFKDDVVLDKGLSVLKLLDELKNK 117
>gi|297202737|ref|ZP_06920134.1| ribosome-binding factor A [Streptomyces sviceus ATCC 29083]
gi|297148184|gb|EFH28871.1| ribosome-binding factor A [Streptomyces sviceus ATCC 29083]
Length = 150
Score = 89.2 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 22/108 (20%), Positives = 49/108 (45%), Gaps = 4/108 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDVSPD 69
RA R+ + +R + +L +D + ++I++ ++ DLR ATV+ ++ D
Sbjct: 6 RAKRLADLIREVVAQKLLRG-IKDPRLGSH-VTITDTRVTGDLREATVFYTVYGGDEERA 63
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ L +R +G + +++ P L F D + ++ L+
Sbjct: 64 AAAAGLESAKGVLRSAVGAA-AGVKFTPTLTFVADALPDTAKTIDDLL 110
>gi|311113218|ref|YP_003984440.1| ribosome-binding factor A [Rothia dentocariosa ATCC 17931]
gi|310944712|gb|ADP41006.1| ribosome-binding factor A [Rothia dentocariosa ATCC 17931]
Length = 165
Score = 89.2 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 18/110 (16%), Positives = 46/110 (41%), Gaps = 6/110 (5%)
Query: 19 VRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDVSPDRVISALNC 77
++ + + +D + +++++ ++ DL+ AT+Y ++ + + AL
Sbjct: 33 IKVIVAQALERR-VKDPRLG--FVTVTDARVTNDLQHATLYYTVYGSEEEQENTKKALES 89
Query: 78 NIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALE 127
+R +G+++ R P L F D + + L L+ + E
Sbjct: 90 AKGILRSEVGKNITA-RLTPTLTFVPDEVPVNAYHLEDLLKKTR-ERDAE 137
>gi|269219596|ref|ZP_06163450.1| ribosome-binding factor A [Actinomyces sp. oral taxon 848 str.
F0332]
gi|269210838|gb|EEZ77178.1| ribosome-binding factor A [Actinomyces sp. oral taxon 848 str.
F0332]
Length = 179
Score = 89.2 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 5/99 (5%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
+ RA RV E + ++ ++ N +D + ++++++V ++ DL+ ATV+ + D
Sbjct: 1 MPNPRANRVAERI-HEIVASLVTNRLKDPRLE--LVTVTDVRVTGDLQHATVFYTAYGDQ 57
Query: 67 SP-DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYD 104
ALN IR +GR L LR P + F D
Sbjct: 58 RKLRDAGRALNRAKGNIRSHVGRQL-GLRLTPTIEFTAD 95
>gi|294155746|ref|YP_003560130.1| ribosome-binding factor A [Mycoplasma crocodyli MP145]
gi|291600038|gb|ADE19534.1| ribosome-binding factor A [Mycoplasma crocodyli MP145]
Length = 112
Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 28/108 (25%), Positives = 54/108 (50%), Gaps = 6/108 (5%)
Query: 14 RVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVIS 73
R +++ L +I N+ +I ++ +V +S DL VY++ ++ +
Sbjct: 8 RKESQIQQLLASIISNDIKNVNVIDPVLM---DVKLSADLSHCKVYVNFTS--HKEKGLE 62
Query: 74 ALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
ALN + +IR + +SL N R VP++ F DT + K++A++ K
Sbjct: 63 ALNNSAGYIRTLLAKSL-NWRKVPQIHFHQDTVSEYGSKIDAILAQIK 109
>gi|300780966|ref|ZP_07090820.1| ribosome-binding factor A [Corynebacterium genitalium ATCC 33030]
gi|300532673|gb|EFK53734.1| ribosome-binding factor A [Corynebacterium genitalium ATCC 33030]
Length = 149
Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 27/125 (21%), Positives = 59/125 (47%), Gaps = 10/125 (8%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS 67
++ RA R+ + +++ + I +DR + ++++++V ++ DL ATVY ++ +
Sbjct: 6 DNTRAQRLAKRIQTIVASAIERQ-IKDRRLE--LVTVTDVRVTGDLHDATVYYTVRGEGI 62
Query: 68 PDR-----VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
D AL + +R +G L +R+ P L F DT ++ ++ L+ +
Sbjct: 63 DDEPDYDAAAEALTRHKGQLRKIVGEEL-GVRFTPTLTFELDTVPEASARMEELLARAR- 120
Query: 123 PVALE 127
E
Sbjct: 121 ARDEE 125
>gi|111225117|ref|YP_715911.1| ribosome-binding factor A [Frankia alni ACN14a]
gi|122953805|sp|Q0RDS6|RBFA_FRAAA RecName: Full=Ribosome-binding factor A
gi|111152649|emb|CAJ64390.1| Ribosome-binding factor A (partial match) [Frankia alni ACN14a]
Length = 203
Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 25/125 (20%), Positives = 52/125 (41%), Gaps = 13/125 (10%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
RA ++ +R + + +D + +++++EV ++ DL ATV+ ++ D R
Sbjct: 6 RARKLAVRIREVVASALERG-VKDPRLG--MVTVTEVRVTPDLVDATVFYTVYGDEDARR 62
Query: 71 V-ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM--------CLPK 121
AL +R ++GR+ ++ P L F +D L L+ L +
Sbjct: 63 ASAEALESARGLLRSQVGRA-TGVKVTPTLTFVHDRLPDDAKHLEDLISVARERDARLAE 121
Query: 122 IPVAL 126
+
Sbjct: 122 VRRDA 126
>gi|225551697|ref|ZP_03772641.1| ribosome-binding factor A [Borrelia sp. SV1]
gi|225371724|gb|EEH01150.1| ribosome-binding factor A [Borrelia sp. SV1]
Length = 120
Score = 88.9 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 27/100 (27%), Positives = 51/100 (51%), Gaps = 3/100 (3%)
Query: 19 VRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI-SLPLDVSPDRVISALNC 77
+ + +I++ +D I +++ +V S DL A V++ S+ S D + ALN
Sbjct: 14 IAQEIGNLIVSGGIKDPRIHS-FLTVVKVEFSKDLINAKVFVGSIKEGASLDNAVKALNN 72
Query: 78 NIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
FI+ +I + ++ +R P+L F D SL + +N L+
Sbjct: 73 AKGFIQSQIIKRIK-VRSTPKLLFVKDDSLSKSFYVNKLI 111
>gi|310287988|ref|YP_003939247.1| Ribosome-binding factor A [Bifidobacterium bifidum S17]
gi|309251925|gb|ADO53673.1| Ribosome-binding factor A [Bifidobacterium bifidum S17]
Length = 194
Score = 88.5 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 25/127 (19%), Positives = 53/127 (41%), Gaps = 10/127 (7%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL- 64
+ RA RV ++ + + + D+ ++ ++I++V ++ DL++A VY +
Sbjct: 2 AGTNPRAARVAALIQRVIASS-MEAQLHDKRLAS--VTITDVRVTNDLQIAKVYWTQLGH 58
Query: 65 ----DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
R AL+ +R +G LR P+L+F YD ++ ++ +
Sbjct: 59 DGREQGERKRAKQALDQAKGRLRSLVGSK-AGLRLTPQLQFIYDEVPSEAHEIEDILAVA 117
Query: 121 KIPVALE 127
E
Sbjct: 118 H-KRDEE 123
>gi|283458504|ref|YP_003363132.1| ribosome-binding factor A [Rothia mucilaginosa DY-18]
gi|283134547|dbj|BAI65312.1| ribosome-binding factor A [Rothia mucilaginosa DY-18]
Length = 159
Score = 88.5 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 18/104 (17%), Positives = 46/104 (44%), Gaps = 5/104 (4%)
Query: 19 VRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-DVSPDRVISALNC 77
++ + + +D + ++I++ ++ DL+ AT+Y ++ + AL
Sbjct: 27 IKVIVAKALERR-VKDPRLG--FVTITDARVTNDLQHATLYYTVFGSEEDAANTKKALES 83
Query: 78 NIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+R +G+++ R P L F D ++ + + AL+ +
Sbjct: 84 AKGILRAEVGKNITA-RLTPTLTFVADEVPENAFHIEALLRETR 126
>gi|224283745|ref|ZP_03647067.1| ribosome-binding factor A [Bifidobacterium bifidum NCIMB 41171]
gi|311064861|ref|YP_003971587.1| ribosome-binding factor A RbfA [Bifidobacterium bifidum PRL2010]
gi|313140901|ref|ZP_07803094.1| ribosome-binding factor A [Bifidobacterium bifidum NCIMB 41171]
gi|310867181|gb|ADP36550.1| RbfA Ribosome-binding factor A [Bifidobacterium bifidum PRL2010]
gi|313133411|gb|EFR51028.1| ribosome-binding factor A [Bifidobacterium bifidum NCIMB 41171]
Length = 194
Score = 88.5 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 25/127 (19%), Positives = 53/127 (41%), Gaps = 10/127 (7%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL- 64
+ RA RV ++ + + + D+ ++ ++I++V ++ DL++A VY +
Sbjct: 2 AGTNPRAARVAALIQRVIASS-MEAQLHDKRLAS--VTITDVRVTNDLQIAKVYWTQLGH 58
Query: 65 ----DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
R AL+ +R +G LR P+L+F YD ++ ++ +
Sbjct: 59 DGREQGERKRAKQALDQAKGRLRSLVGSK-AGLRLTPQLQFIYDEVPSEAHEIEDILAVA 117
Query: 121 KIPVALE 127
E
Sbjct: 118 H-KRDEE 123
>gi|116669978|ref|YP_830911.1| ribosome-binding factor A [Arthrobacter sp. FB24]
gi|166218419|sp|A0JUU1|RBFA_ARTS2 RecName: Full=Ribosome-binding factor A
gi|116610087|gb|ABK02811.1| ribosome-binding factor A [Arthrobacter sp. FB24]
Length = 169
Score = 88.5 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 22/112 (19%), Positives = 49/112 (43%), Gaps = 5/112 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV-SPD 69
RA ++ + ++ + + + +D + I++++ ++ DL+ AT+Y ++ D
Sbjct: 6 RAAKLAQRIKVVVAEALGR-KVKDPRLEG--ITVTDARVTNDLQHATIYYTVFGDQVVQA 62
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
L +R +GR++ +R P L F D + L L+ K
Sbjct: 63 DAAKGLEKAKGVLRQEVGRNI-TVRLTPTLEFVADQIPVNASNLEELLRAAK 113
>gi|225619655|ref|YP_002720912.1| ribosome-binding factor A [Brachyspira hyodysenteriae WA1]
gi|225214474|gb|ACN83208.1| ribosome-binding factor A [Brachyspira hyodysenteriae WA1]
Length = 101
Score = 88.5 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Query: 30 NEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRS 89
E +D I ++++I++V + DL+ A VY + + V++ LN I + +
Sbjct: 2 REIEDPRIKNNLVTITKVDTAKDLKNAKVYFVCLREDKQNEVLNGLNSAKGVIFSYLKKQ 61
Query: 90 LRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALEK 128
L +RYVP L F YD +L K+ + IP + +
Sbjct: 62 L-TIRYVPNLTFHYDKNLIETNKVLTDIKNLDIPEEIPE 99
>gi|282854635|ref|ZP_06263970.1| ribosome-binding factor A [Propionibacterium acnes J139]
gi|282582217|gb|EFB87599.1| ribosome-binding factor A [Propionibacterium acnes J139]
gi|314923897|gb|EFS87728.1| ribosome-binding factor A [Propionibacterium acnes HL001PA1]
gi|314981928|gb|EFT26021.1| ribosome-binding factor A [Propionibacterium acnes HL110PA3]
gi|315090743|gb|EFT62719.1| ribosome-binding factor A [Propionibacterium acnes HL110PA4]
gi|315104217|gb|EFT76193.1| ribosome-binding factor A [Propionibacterium acnes HL050PA2]
Length = 143
Score = 88.5 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 26/115 (22%), Positives = 53/115 (46%), Gaps = 9/115 (7%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
MK NP R ++ +++R + + +D + ++I++V ++ D R AT++
Sbjct: 1 MKPPNP----RVAKLADQIRVVVAETLERR-VKDPRLG--FVTITDVRLTGDSRDATLFW 53
Query: 61 S-LPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLN 114
+ + D +AL +R +G+ L LRY P L F D + ++ +
Sbjct: 54 TAMGTDQQIASTAAALKSAKGLLRSTVGKRL-GLRYAPTLTFVRDATPETAKSIE 107
>gi|255326383|ref|ZP_05367467.1| ribosome-binding factor A [Rothia mucilaginosa ATCC 25296]
gi|255296600|gb|EET75933.1| ribosome-binding factor A [Rothia mucilaginosa ATCC 25296]
Length = 146
Score = 88.5 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 18/104 (17%), Positives = 46/104 (44%), Gaps = 5/104 (4%)
Query: 19 VRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-DVSPDRVISALNC 77
++ + + +D + ++I++ ++ DL+ AT+Y ++ + AL
Sbjct: 14 IKVIVAKALERR-VKDPRLG--FVTITDARVTNDLQHATLYYTVFGSEEDAANTKKALES 70
Query: 78 NIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+R +G+++ R P L F D ++ + + AL+ +
Sbjct: 71 AKGILRAEVGKNITA-RLTPTLTFVADEVPENAFHIEALLRETR 113
>gi|123967667|ref|YP_001008525.1| ribosome-binding factor A [Prochlorococcus marinus str. AS9601]
gi|166219390|sp|A2BNQ7|RBFA_PROMS RecName: Full=Ribosome-binding factor A
gi|123197777|gb|ABM69418.1| Ribosome-binding factor A [Prochlorococcus marinus str. AS9601]
Length = 130
Score = 88.5 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 56/117 (47%), Gaps = 3/117 (2%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS 67
N+ R +V ++ + +IL N+ ++ LI ++IS++ +S DL+ +YI+
Sbjct: 3 NNYRLEKVSSLLKKEIT-LILQNDLENDLIRDHFVNISKIDLSGDLQHCKIYITSTAQEK 61
Query: 68 -PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIP 123
++ LN IR +G+ + +R VPE+ F+ D L + L+ K
Sbjct: 62 VRTEIVENLNTAKSSIRHSLGKRI-EMRRVPEIIFKDDVVLDKGLSVLKLLDELKNK 117
>gi|313836835|gb|EFS74549.1| ribosome-binding factor A [Propionibacterium acnes HL037PA2]
gi|314929753|gb|EFS93584.1| ribosome-binding factor A [Propionibacterium acnes HL044PA1]
gi|314972186|gb|EFT16283.1| ribosome-binding factor A [Propionibacterium acnes HL037PA3]
gi|328907611|gb|EGG27375.1| ribosome-binding factor A [Propionibacterium sp. P08]
Length = 143
Score = 88.1 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 26/115 (22%), Positives = 53/115 (46%), Gaps = 9/115 (7%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
MK NP R ++ +++R + + +D + ++I++V ++ D R AT++
Sbjct: 1 MKPPNP----RVAKLADQIRVVVAETLERR-VKDPRLG--FVTITDVRLTGDSRDATLFW 53
Query: 61 S-LPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLN 114
+ + D +AL +R +G+ L LRY P L F D + ++ +
Sbjct: 54 TAMGTDQQIASTAAALESAKGLLRSTVGKRL-GLRYAPTLTFVRDATPETAKSIE 107
>gi|320008226|gb|ADW03076.1| ribosome-binding factor A [Streptomyces flavogriseus ATCC 33331]
Length = 153
Score = 88.1 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 19/112 (16%), Positives = 47/112 (41%), Gaps = 4/112 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-DVSPD 69
RA ++ + ++ + + +D + ++I++ ++ DLR ATV+ ++ D
Sbjct: 6 RAKKLADLIQVVVAEKLQRG-IKDPRLGTH-VTITDTRVTGDLREATVFYTVYGDDEERA 63
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+ L +R +G + ++ P L F D + + L+ +
Sbjct: 64 SAAAGLESAKGILRSAVGAA-AGTKFTPTLAFVADALPDNAKAIEDLLDRAR 114
>gi|269795638|ref|YP_003315093.1| ribosome-binding factor A [Sanguibacter keddieii DSM 10542]
gi|269097823|gb|ACZ22259.1| ribosome-binding factor A [Sanguibacter keddieii DSM 10542]
Length = 154
Score = 88.1 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 21/118 (17%), Positives = 52/118 (44%), Gaps = 6/118 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
RA ++ + ++ + ++ + +D + +++++V ++ DL+ A+V+ ++ D
Sbjct: 6 RARKLADRIQVIVAQML-DTRIKDPRLG--FVTVTDVRVTGDLQNASVFYTVMGDEESRA 62
Query: 71 -VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALE 127
+AL IR +G+ +R P L F D+ + K + + E
Sbjct: 63 GTAAALESAKGMIRSEVGKQ-TGIRLTPTLEFHLDSVPEIAEKFGEALLEAR-RRDAE 118
>gi|260654726|ref|ZP_05860214.1| ribosome-binding factor A [Jonquetella anthropi E3_33 E1]
gi|260630441|gb|EEX48635.1| ribosome-binding factor A [Jonquetella anthropi E3_33 E1]
Length = 130
Score = 88.1 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 26/109 (23%), Positives = 53/109 (48%), Gaps = 5/109 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
R R+ ++ + +++ ++ +D + S+ + ++ V S DL+ A VY + L
Sbjct: 5 RMDRINSQLMREISRILM-SDVKDEVASQAI--VTSVDCSKDLKYAKVYYT-ALTARRKS 60
Query: 71 VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ AL F+R +G LR R VP L F +D + + +++ L+
Sbjct: 61 LAEALEKVAGFVRKTLGSRLRY-RTVPLLTFVFDETEEKARQMDTLLDQ 108
>gi|297569834|ref|YP_003691178.1| ribosome-binding factor A [Desulfurivibrio alkaliphilus AHT2]
gi|296925749|gb|ADH86559.1| ribosome-binding factor A [Desulfurivibrio alkaliphilus AHT2]
Length = 135
Score = 88.1 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 30/114 (26%), Positives = 54/114 (47%), Gaps = 4/114 (3%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS 67
RR R+ +E+R + +++ + QD +++ ++I ++ DL A +Y S+ + +
Sbjct: 21 GKRRPDRIADEIRQEVAALLV-AKVQDPRVAK--VTILRATVTPDLSQARLYYSVFDEAA 77
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
L FIR + ++L LR VP L F +D SL KL + K
Sbjct: 78 AAEAAKGLASAKGFIRSSLAKNL-ALRVVPALIFEHDRSLAEQEKLERIFQEIK 130
>gi|314966044|gb|EFT10143.1| ribosome-binding factor A [Propionibacterium acnes HL082PA2]
gi|315094991|gb|EFT66967.1| ribosome-binding factor A [Propionibacterium acnes HL060PA1]
gi|327328075|gb|EGE69844.1| ribosome-binding factor A [Propionibacterium acnes HL103PA1]
Length = 143
Score = 88.1 bits (218), Expect = 4e-16, Method: Composition-based stats.
Identities = 25/115 (21%), Positives = 53/115 (46%), Gaps = 9/115 (7%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
MK NP R ++ ++++ + + +D + ++I++V ++ D R AT++
Sbjct: 1 MKPPNP----RVAKLADQIKVVVAETLERR-VKDPRLG--FVTITDVRLTGDSRDATLFW 53
Query: 61 S-LPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLN 114
+ + D +AL +R +G+ L LRY P L F D + ++ +
Sbjct: 54 TAMGTDQQIASTAAALKSAKGLLRSTVGKRL-GLRYAPTLTFVRDATPETAKSIE 107
>gi|86742241|ref|YP_482641.1| ribosome-binding factor A [Frankia sp. CcI3]
gi|123737124|sp|Q2J730|RBFA_FRASC RecName: Full=Ribosome-binding factor A
gi|86569103|gb|ABD12912.1| ribosome-binding factor A [Frankia sp. CcI3]
Length = 168
Score = 88.1 bits (218), Expect = 4e-16, Method: Composition-based stats.
Identities = 23/109 (21%), Positives = 49/109 (44%), Gaps = 5/109 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS-PD 69
RA R+ +R + + +D + ++++++V ++ DL ATV+ ++ D +
Sbjct: 6 RARRLAVRIREVVASTLERG-VKDPRLG--MVTVTDVRLTPDLVDATVFYTVYGDETARQ 62
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
AL +R ++GR+ ++ P L F +D L L+
Sbjct: 63 ASAQALESARGLLRSQVGRA-TGVKVTPTLTFVHDRLPDDAQHLEKLIS 110
>gi|29829091|ref|NP_823725.1| ribosome-binding factor A [Streptomyces avermitilis MA-4680]
gi|34098449|sp|Q82K55|RBFA_STRAW RecName: Full=Ribosome-binding factor A
gi|29606197|dbj|BAC70260.1| putative ribosome-binding factor [Streptomyces avermitilis MA-4680]
Length = 157
Score = 88.1 bits (218), Expect = 4e-16, Method: Composition-based stats.
Identities = 21/108 (19%), Positives = 47/108 (43%), Gaps = 4/108 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-DVSPD 69
RA R+ + +R + + +D + ++I++ ++ DLR ATV+ ++ D
Sbjct: 6 RAKRLADLIREVVAQKLQRG-IKDPRLGSQ-VTITDTRVTGDLREATVFYTVYGDDEERA 63
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ L +R +G + +++ P L F D + + L+
Sbjct: 64 AAAAGLESAKGVLRSAVGAA-AGVKFTPTLTFVADALPDTAKTIEDLL 110
>gi|87309242|ref|ZP_01091378.1| probable ribosome-binding factor A [Blastopirellula marina DSM
3645]
gi|87287881|gb|EAQ79779.1| probable ribosome-binding factor A [Blastopirellula marina DSM
3645]
Length = 138
Score = 88.1 bits (218), Expect = 4e-16, Method: Composition-based stats.
Identities = 25/114 (21%), Positives = 55/114 (48%), Gaps = 5/114 (4%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-D 65
+SRR L+ +R + I+ E +D ++ ++++ V MS D+R A V++S+ +
Sbjct: 1 MSSRRLLKAASAIREVVSMAII-TELRDPRVTG--VTVTAVEMSPDMRQAKVHVSIMGHE 57
Query: 66 VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ L + F++ +I + RY P+L F D ++ ++ ++
Sbjct: 58 KKQADCLEGLKRSAGFLQAKINDRIDT-RYTPKLEFVIDKGVKHSLEVARILKD 110
>gi|187478883|ref|YP_786907.1| ribosome-binding factor A [Bordetella avium 197N]
gi|123514389|sp|Q2KXY9|RBFA_BORA1 RecName: Full=Ribosome-binding factor A
gi|115423469|emb|CAJ50003.1| ribosome-binding factor A [Bordetella avium 197N]
Length = 132
Score = 88.1 bits (218), Expect = 4e-16, Method: Composition-based stats.
Identities = 28/109 (25%), Positives = 54/109 (49%), Gaps = 5/109 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
R LR+ E+++ L +I + +I++S V +S D A VY ++ L PD
Sbjct: 12 RNLRLAEQIQKDLAGIIQREI---DMTRAGLITLSGVELSADYAHAKVYFTV-LGAEPDT 67
Query: 71 VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ LN ++ ++ + L ++ VP LRF +D L+ +++ L+
Sbjct: 68 AAALLNEKAGWLHSQLYK-LLHIHTVPTLRFVHDPQLERGIEMSMLIDR 115
>gi|297156808|gb|ADI06520.1| ribosome-binding factor A [Streptomyces bingchenggensis BCW-1]
Length = 176
Score = 87.7 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 22/104 (21%), Positives = 47/104 (45%), Gaps = 5/104 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPD- 69
RA ++ + +R + ++ +D + ++I++ ++ DLR ATV+ ++ D
Sbjct: 6 RARKLADRIRVVVAEMLQRR-IKDPRLGY--VTITDTRVTGDLREATVFYTVLGDDEERV 62
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKL 113
+AL +R +GR +R+ P L F D + +
Sbjct: 63 ASAAALESAKGVLRSEVGRQ-TGVRFTPSLTFVPDALPDNARTI 105
>gi|239787341|emb|CAX83818.1| Ribosome-binding factor A [uncultured bacterium]
Length = 143
Score = 87.7 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 27/123 (21%), Positives = 55/123 (44%), Gaps = 7/123 (5%)
Query: 2 KNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVIS------ISEVCMSVDLRV 55
K + PK++ R LR+ +EV+ + +I I +++ I+ +S D++
Sbjct: 8 KTQQPKSANRQLRLCQEVQRFVSELITRKVLPPVDIDGVMVTADPLMTIARADVSPDMKT 67
Query: 56 ATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNA 115
A +Y+ D + L +R + + L N+R+ PEL F D ++ +++
Sbjct: 68 AKIYVRHFDDNQLPASLKYLEAVKSVMRHAMAKQL-NMRFTPELSFHVDALVEKERRMDE 126
Query: 116 LMC 118
L
Sbjct: 127 LFS 129
>gi|91216162|ref|ZP_01253130.1| putative ribosome-binding factor A [Psychroflexus torquis ATCC
700755]
gi|91185679|gb|EAS72054.1| putative ribosome-binding factor A [Psychroflexus torquis ATCC
700755]
Length = 130
Score = 87.7 bits (217), Expect = 5e-16, Method: Composition-based stats.
Identities = 25/110 (22%), Positives = 50/110 (45%), Gaps = 2/110 (1%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
S R ++ ++ L VI E + +IS+++V ++ DL A ++S+
Sbjct: 1 MESNRQKKIAGILQKDLAEVI-QLELKTAGTQNLIISVTKVRVTPDLLQAKAHLSIFPSE 59
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRN-LRYVPELRFRYDTSLQSYWKLNA 115
++++ + I+ ++ RN LR +PEL F D S++ L
Sbjct: 60 KSEQIVEEIRTMKSKIKHQVATRTRNQLRRMPELEFFNDDSIEYINDLEQ 109
>gi|83815185|ref|YP_445893.1| ribosome-binding factor A [Salinibacter ruber DSM 13855]
gi|294507803|ref|YP_003571861.1| Ribosome-binding factor A [Salinibacter ruber M8]
gi|123528568|sp|Q2S1N8|RBFA_SALRD RecName: Full=Ribosome-binding factor A
gi|83756579|gb|ABC44692.1| ribosome-binding factor A [Salinibacter ruber DSM 13855]
gi|294344131|emb|CBH24909.1| Ribosome-binding factor A [Salinibacter ruber M8]
Length = 132
Score = 87.7 bits (217), Expect = 5e-16, Method: Composition-based stats.
Identities = 28/109 (25%), Positives = 55/109 (50%), Gaps = 6/109 (5%)
Query: 12 ALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD--VSPD 69
RV E V+ + ++ E+ DRL + +++I+ ++ DL +A +Y S+ D +
Sbjct: 5 TERVAELVQREVARILQR-EYADRL--QPMVTITRARVTGDLSIAYLYASVMGDTAEERE 61
Query: 70 RVISALNCNIKFIRGRIGRSLRN-LRYVPELRFRYDTSLQSYWKLNALM 117
L IR ++ +R+ +R +PEL+F +D SL+ ++ L
Sbjct: 62 ATFRQLESLADEIRNQLASRIRHKVREIPELKFFHDESLEEAKRMENLF 110
>gi|220912197|ref|YP_002487506.1| ribosome-binding factor A [Arthrobacter chlorophenolicus A6]
gi|254789729|sp|B8HG55|RBFA_ARTCA RecName: Full=Ribosome-binding factor A
gi|219859075|gb|ACL39417.1| ribosome-binding factor A [Arthrobacter chlorophenolicus A6]
Length = 175
Score = 87.7 bits (217), Expect = 5e-16, Method: Composition-based stats.
Identities = 21/109 (19%), Positives = 48/109 (44%), Gaps = 5/109 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS-PD 69
RA ++ + ++ + + + +D + +++++ ++ DL+ ATVY ++ D +
Sbjct: 6 RAAKLAQRIKVVVAEALGR-KVKDPRLEG--VTVTDARVTNDLQHATVYYTVFGDETAHA 62
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
L +R +GR++ +R P L F D L L+
Sbjct: 63 DAAKGLEKAKGVLRQEVGRNI-TVRLTPTLEFVADQIPVVASNLEELLR 110
>gi|289643643|ref|ZP_06475756.1| ribosome-binding factor A [Frankia symbiont of Datisca glomerata]
gi|289506534|gb|EFD27520.1| ribosome-binding factor A [Frankia symbiont of Datisca glomerata]
Length = 158
Score = 87.7 bits (217), Expect = 5e-16, Method: Composition-based stats.
Identities = 22/112 (19%), Positives = 48/112 (42%), Gaps = 5/112 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV-SPD 69
RA R+ +R + + +D + ++++++ ++ DL ATV+ ++ D
Sbjct: 6 RARRLAVRIREVVAAALERQ-VKDPRLG--MVTVTDARVTPDLTEATVFYTVYGDDADRA 62
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
AL +R ++GR ++ P L F +D + L L+ +
Sbjct: 63 DSARALESAKGLLRSQVGRQ-TGVKVTPTLTFVHDRLPEDARHLEELISTAR 113
>gi|171741237|ref|ZP_02917044.1| hypothetical protein BIFDEN_00311 [Bifidobacterium dentium ATCC
27678]
gi|283455400|ref|YP_003359964.1| ribosome-binding factor A [Bifidobacterium dentium Bd1]
gi|171276851|gb|EDT44512.1| hypothetical protein BIFDEN_00311 [Bifidobacterium dentium ATCC
27678]
gi|283102034|gb|ADB09140.1| rbfA Ribosome-binding factor A [Bifidobacterium dentium Bd1]
Length = 169
Score = 87.7 bits (217), Expect = 5e-16, Method: Composition-based stats.
Identities = 24/127 (18%), Positives = 54/127 (42%), Gaps = 10/127 (7%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
+ RA R+ ++ + + + D+ +S ++I+EV ++ DL++A +Y +
Sbjct: 2 AGTNPRAARIAALIQRVIASS-MEAQLHDKRLSN--VTITEVRVTNDLQIAKIYWTQLGH 58
Query: 66 VSPDR-----VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
++ ALN +R +G LR P+L F +D ++ ++ +
Sbjct: 59 EGREQGERRRAQQALNQAKGRLRSLVGSK-AGLRLTPQLEFIFDEVPGEAHEIEDILAIA 117
Query: 121 KIPVALE 127
+ E
Sbjct: 118 R-KRDEE 123
>gi|224532197|ref|ZP_03672829.1| ribosome-binding factor A [Borrelia valaisiana VS116]
gi|224511662|gb|EEF82068.1| ribosome-binding factor A [Borrelia valaisiana VS116]
Length = 120
Score = 87.7 bits (217), Expect = 5e-16, Method: Composition-based stats.
Identities = 28/113 (24%), Positives = 55/113 (48%), Gaps = 3/113 (2%)
Query: 14 RVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI-SLPLDVSPDRVI 72
++ + + +I++ +D I +++ +V S DL A V++ S+ S D +
Sbjct: 9 KLESLIAQEIGNLIVSRGIKDPRIHS-FLTVVKVEFSKDLINAKVFMGSIKEGASLDNAV 67
Query: 73 SALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
ALN FI+ +I + ++ +R P+L F D SL + +N ++ IP
Sbjct: 68 KALNNAKGFIQSQIVKRVK-VRSTPKLLFIKDDSLSKSFYVNKIIEGLNIPRE 119
>gi|306823534|ref|ZP_07456909.1| ribosome-binding factor A [Bifidobacterium dentium ATCC 27679]
gi|309802961|ref|ZP_07697062.1| ribosome-binding factor A [Bifidobacterium dentium JCVIHMP022]
gi|304553241|gb|EFM41153.1| ribosome-binding factor A [Bifidobacterium dentium ATCC 27679]
gi|308220428|gb|EFO76739.1| ribosome-binding factor A [Bifidobacterium dentium JCVIHMP022]
Length = 169
Score = 87.3 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 24/127 (18%), Positives = 55/127 (43%), Gaps = 10/127 (7%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
+ RA R+ ++ + + + D+ +S ++I+EV ++ DL++A +Y +
Sbjct: 2 AGTNPRAARIAALIQRVIASS-MEAQLHDKRLSN--VTITEVRVTNDLQIAKIYWTQLGH 58
Query: 66 VSPDR-----VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
++ ALN +R +G LR P+L F +D + ++ ++ +
Sbjct: 59 EGHEQGERRRAQQALNQAKGRLRSLVGSK-AGLRLTPQLEFIFDEVPREAHEIEDILAIA 117
Query: 121 KIPVALE 127
+ E
Sbjct: 118 R-KRDEE 123
>gi|116624265|ref|YP_826421.1| ribosome-binding factor A [Candidatus Solibacter usitatus
Ellin6076]
gi|122253043|sp|Q01W29|RBFA_SOLUE RecName: Full=Ribosome-binding factor A
gi|116227427|gb|ABJ86136.1| ribosome-binding factor A [Candidatus Solibacter usitatus
Ellin6076]
Length = 123
Score = 87.3 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 55/120 (45%), Gaps = 5/120 (4%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPD 69
RR LRV E VR L +I E D + ++EV +S D R A++ I+ D
Sbjct: 4 RRTLRVSEAVREELSEIISF-EMDDPRVLEA--EVTEVMVSPDSRHASIKIACRGDEKKQ 60
Query: 70 R-VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALEK 128
I+AL ++R + L LR+VPEL F D + +++ L+ + E+
Sbjct: 61 NHAIAALEHAAGYLRRELASRL-QLRHVPELHFERDKNPDVESRVDFLLRRARRTKGREE 119
>gi|282861443|ref|ZP_06270508.1| ribosome-binding factor A [Streptomyces sp. ACTE]
gi|282564101|gb|EFB69638.1| ribosome-binding factor A [Streptomyces sp. ACTE]
Length = 150
Score = 87.3 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 19/110 (17%), Positives = 46/110 (41%), Gaps = 4/110 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-DVSPD 69
RA ++ + ++ + + +D + ++I++ ++ DLR ATV+ ++ D
Sbjct: 6 RAKKLADLIQVVVAEKLQRG-IKDPRLGTH-VTITDTRVTGDLREATVFYTVYGDDEERA 63
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ L +R +G + ++ P L F D + + L+
Sbjct: 64 SAAAGLESAKGILRSAVGAA-AGTKFTPTLAFVADALPDNAKAIEDLLDR 112
>gi|302565878|pdb|2KZF|A Chain A, Solution Nmr Structure Of The Thermotoga Maritima Protein
Tm0855 A Putative Ribosome Binding Factor A
Length = 106
Score = 87.3 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 29/103 (28%), Positives = 47/103 (45%), Gaps = 4/103 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD-VSPD 69
R + E++ LM + +D + +D ++ S V +S D R A VY+S
Sbjct: 7 RKAMLESEIQKLLMEALQQ--LRDPRLKKDFVTFSRVELSKDKRYADVYVSFLGTPEERK 64
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWK 112
+ LN F R I ++LR L PE+RF D +++ K
Sbjct: 65 ETVEILNRAKGFFRTFIAKNLR-LYVAPEIRFYEDKGIEASVK 106
>gi|325962808|ref|YP_004240714.1| ribosome-binding factor A [Arthrobacter phenanthrenivorans Sphe3]
gi|323468895|gb|ADX72580.1| ribosome-binding factor A [Arthrobacter phenanthrenivorans Sphe3]
Length = 169
Score = 87.3 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 24/112 (21%), Positives = 50/112 (44%), Gaps = 5/112 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS-PD 69
RA ++ + ++ + + + +D + I++++ ++ DL+ ATVY ++ D +
Sbjct: 6 RAAKLAQRIKVVVAEALGR-KVKDPRLEG--ITVTDARVTNDLQHATVYYTVFGDQAVQA 62
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
L +R +GR++ +R P L F D Q L L+ K
Sbjct: 63 DAAKGLEKAKGVLRQEVGRNI-TVRLTPSLEFVADQIPQVASNLEELLREAK 113
>gi|306820440|ref|ZP_07454076.1| ribosome-binding factor A [Eubacterium yurii subsp. margaretiae
ATCC 43715]
gi|304551515|gb|EFM39470.1| ribosome-binding factor A [Eubacterium yurii subsp. margaretiae
ATCC 43715]
Length = 131
Score = 87.3 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 37/125 (29%), Positives = 66/125 (52%), Gaps = 8/125 (6%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLI--SRDVISISEVCMSVDLRVATVYISLPLDV 66
R R+GEE++ + +++ ++ ++ + +IS+ V + DL+ A VYIS+ L
Sbjct: 3 FERTQRIGEEIKKTITKMLIEGHIKNTVLLNTHSLISVVSVDVVRDLKYAYVYISV-LGQ 61
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSY----WKLNALMCLPKI 122
+ +I++L + FIR +GR + LRY PEL F D S+++ K+N +
Sbjct: 62 GQEEIIASLQKSAGFIRKEVGRFTK-LRYTPELIFLEDNSIKNGVEMISKINKIAEAEHR 120
Query: 123 PVALE 127
ALE
Sbjct: 121 EEALE 125
>gi|15595147|ref|NP_212936.1| ribosome-binding factor A (rbfA) [Borrelia burgdorferi B31]
gi|2688746|gb|AAC67152.1| ribosome-binding factor A (rbfA) [Borrelia burgdorferi B31]
Length = 127
Score = 87.3 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 27/100 (27%), Positives = 51/100 (51%), Gaps = 3/100 (3%)
Query: 19 VRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI-SLPLDVSPDRVISALNC 77
+ + +I++ +D I +++ +V S DL A V++ S+ S D + ALN
Sbjct: 21 IAQEIGNLIVSGGIKDPRIHS-FLTVVKVEFSKDLINAKVFMGSIKEGASLDNAVKALNN 79
Query: 78 NIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
FI+ +I + ++ +R P+L F D SL + +N L+
Sbjct: 80 AKGFIQSQIIKRIK-VRSTPKLLFVKDDSLSKSFYVNKLI 118
>gi|239917230|ref|YP_002956788.1| ribosome-binding factor A [Micrococcus luteus NCTC 2665]
gi|281414295|ref|ZP_06246037.1| ribosome-binding factor A [Micrococcus luteus NCTC 2665]
gi|259552035|sp|C5C9T2|RBFA_MICLC RecName: Full=Ribosome-binding factor A
gi|239838437|gb|ACS30234.1| ribosome-binding factor A [Micrococcus luteus NCTC 2665]
Length = 148
Score = 87.3 bits (216), Expect = 7e-16, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 55/118 (46%), Gaps = 6/118 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV-SPD 69
RA R+ + ++ + + DR+ + ++++EV ++ DL+ ATVY ++ D +
Sbjct: 6 RAGRLAQRIKVLVAEALRRGVKDDRV---EPVTVTEVRVTNDLQHATVYYTVLGDEATVA 62
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALE 127
+ N +R +GR L +R VP L F DT ++ L ++ K E
Sbjct: 63 AAHEGIQDNRGILRREVGRGL-TIRLVPTLEFVADTVPEAAAHLEDVLRAAK-ERDAE 118
>gi|108804250|ref|YP_644187.1| ribosome-binding factor A [Rubrobacter xylanophilus DSM 9941]
gi|122381797|sp|Q1AW53|RBFA_RUBXD RecName: Full=Ribosome-binding factor A
gi|108765493|gb|ABG04375.1| ribosome-binding factor A [Rubrobacter xylanophilus DSM 9941]
Length = 122
Score = 87.3 bits (216), Expect = 7e-16, Method: Composition-based stats.
Identities = 21/108 (19%), Positives = 47/108 (43%), Gaps = 4/108 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
R ++ ++ + + + D + +++++ V +S +L ATV+ SL P+
Sbjct: 5 RTRKIEARLKEIVGDEVAS--LSDPRLKG-LVTVTGVRVSPNLSHATVFYSLLAGGDPEE 61
Query: 71 VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
L I+ +G R L+ P LRF D +++ ++ +
Sbjct: 62 AREGLQSAAGRIQAAVGAQTR-LKRTPRLRFEPDPTVERVTRIQRTLR 108
>gi|193213431|ref|YP_001999384.1| ribosome-binding factor A [Chlorobaculum parvum NCIB 8327]
gi|238692664|sp|B3QQI1|RBFA_CHLP8 RecName: Full=Ribosome-binding factor A
gi|193086908|gb|ACF12184.1| ribosome-binding factor A [Chlorobaculum parvum NCIB 8327]
Length = 120
Score = 87.3 bits (216), Expect = 7e-16, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 56/122 (45%), Gaps = 6/122 (4%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVS 67
S R +V ++ L + E + S + +++EV ++ DL +A VY+S + +
Sbjct: 2 SIRTEKVASLLQRELSAIF---EKELPR-SGPLATVTEVKVTADLGIARVYVSIIGSEAQ 57
Query: 68 PDRVISALNCNIKFIRGRIGRSLRN-LRYVPELRFRYDTSLQSYWKLNALMCLPKIPVAL 126
++ L+ K +R + +RN R +PEL F D + ++ L+ + A
Sbjct: 58 RAELMEFLHTETKALRKILSSKIRNQFRRIPELEFYEDRLFEQANRIEELLKSVRRGPAE 117
Query: 127 EK 128
E+
Sbjct: 118 EQ 119
>gi|270285158|ref|ZP_06194552.1| ribosome-binding factor A [Chlamydia muridarum Nigg]
gi|270289178|ref|ZP_06195480.1| ribosome-binding factor A [Chlamydia muridarum Weiss]
gi|301336553|ref|ZP_07224755.1| ribosome-binding factor A [Chlamydia muridarum MopnTet14]
Length = 121
Score = 87.3 bits (216), Expect = 7e-16, Method: Composition-based stats.
Identities = 28/101 (27%), Positives = 53/101 (52%), Gaps = 3/101 (2%)
Query: 18 EVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPDRVISALN 76
+R ++ VIL + + IS I+I+ V +S DL+ A VY+S +P + S + ++AL
Sbjct: 1 MLRESIAKVILK-DVKHPKISNRWITITRVSLSRDLQSARVYVSIMPHENSQEETLAALK 59
Query: 77 CNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ FI + + + L+Y P+L F + + +L+
Sbjct: 60 ASAGFIACQASKDV-VLKYFPDLNFYMEDIFSPQDHIESLL 99
>gi|54307816|ref|YP_128836.1| putative ribosome-binding factor A [Photobacterium profundum SS9]
gi|46912239|emb|CAG19034.1| putative ribosome-binding factor A [Photobacterium profundum SS9]
Length = 101
Score = 86.9 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 22/90 (24%), Positives = 45/90 (50%), Gaps = 4/90 (4%)
Query: 41 VISISEVCMSVDLRVATVYISLP--LDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPE 98
+ +IS V +S D+ A V+++ + + ++ L +IR +G+ +R LR PE
Sbjct: 1 MTTISSVEVSRDMCYAKVFVTFFTIGEQTAKGSLAVLREMAPYIRSLLGKQIR-LRVTPE 59
Query: 99 LRFRYDTSLQSYWKLNALMCLPKIPVALEK 128
L F +D SL +++ L+ + ++
Sbjct: 60 LTFIFDESLTEGMRISNLVSN-AVRDDEKR 88
>gi|298345261|ref|YP_003717948.1| ribosome-binding factor A [Mobiluncus curtisii ATCC 43063]
gi|304390818|ref|ZP_07372770.1| ribosome-binding factor A [Mobiluncus curtisii subsp. curtisii ATCC
35241]
gi|315655682|ref|ZP_07908580.1| ribosome-binding factor A [Mobiluncus curtisii ATCC 51333]
gi|315656404|ref|ZP_07909293.1| ribosome-binding factor A [Mobiluncus curtisii subsp. holmesii ATCC
35242]
gi|298235322|gb|ADI66454.1| ribosome-binding factor A [Mobiluncus curtisii ATCC 43063]
gi|304325701|gb|EFL92947.1| ribosome-binding factor A [Mobiluncus curtisii subsp. curtisii ATCC
35241]
gi|315489746|gb|EFU79373.1| ribosome-binding factor A [Mobiluncus curtisii ATCC 51333]
gi|315492963|gb|EFU82565.1| ribosome-binding factor A [Mobiluncus curtisii subsp. holmesii ATCC
35242]
Length = 145
Score = 86.9 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 5/95 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
R +V + + + ++ + +D + ++I+ V ++ DL+ A VY + D
Sbjct: 5 RREKVAANILTTVASMLA-GKIKDPRLG--FVTITSVEVTGDLQHAKVYYTAYGSDTERT 61
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYD 104
+AL IR R+G++L R P L F D
Sbjct: 62 ASGAALESAKGLIRSRVGKNLGT-RLTPTLEFVSD 95
>gi|158313036|ref|YP_001505544.1| ribosome-binding factor A [Frankia sp. EAN1pec]
gi|158108441|gb|ABW10638.1| ribosome-binding factor A [Frankia sp. EAN1pec]
Length = 189
Score = 86.9 bits (215), Expect = 8e-16, Method: Composition-based stats.
Identities = 24/118 (20%), Positives = 52/118 (44%), Gaps = 6/118 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV-SPD 69
RA R+ +R + + +D + +++I++ ++ DL ATV+ ++ D +
Sbjct: 6 RARRLAVRIREVVASTLERG-VKDPRLG--MVTITDARVTPDLMDATVFYTVYGDDVARQ 62
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALE 127
+AL +R ++GR+ ++ P L F +D L L+ + + E
Sbjct: 63 ASAAALESAKGMLRSQVGRA-TGIKVTPTLTFVHDRLPDDARHLEDLLDVAR-RRDEE 118
>gi|119953579|ref|YP_945789.1| ribosome-binding factor A [Borrelia turicatae 91E135]
gi|119862350|gb|AAX18118.1| ribosome-binding factor A [Borrelia turicatae 91E135]
Length = 124
Score = 86.9 bits (215), Expect = 8e-16, Method: Composition-based stats.
Identities = 27/110 (24%), Positives = 53/110 (48%), Gaps = 3/110 (2%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI-SLPLDVSPD 69
R ++ + + +I++ +D + +++ V +S DL A V+I S+ S D
Sbjct: 10 RKSKLESLLVQEISNLIVSKGIKDPRVHA-FLTVVRVEISNDLINAKVFIGSIKEGASLD 68
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
I ALN FI+ I + +R +R P+L F D ++ + +N ++
Sbjct: 69 NAIKALNNAKGFIQREIVKRIR-VRNTPKLNFLRDDTISKAFYVNKIIEN 117
>gi|311104989|ref|YP_003977842.1| ribosome-binding factor A [Achromobacter xylosoxidans A8]
gi|310759678|gb|ADP15127.1| ribosome-binding factor A [Achromobacter xylosoxidans A8]
gi|317402830|gb|EFV83372.1| ribosome-binding factor A [Achromobacter xylosoxidans C54]
Length = 133
Score = 86.9 bits (215), Expect = 8e-16, Method: Composition-based stats.
Identities = 26/109 (23%), Positives = 53/109 (48%), Gaps = 5/109 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
R LR+ ++++ L +I E +I++S V +S D A VY ++ L P+
Sbjct: 12 RNLRLADQIQKDLAGIIQR-EIDTTR--AGLITLSGVELSTDYAHAKVYFTV-LGAEPEA 67
Query: 71 VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ LN ++ ++ + L ++ VP LRF +D + +++ L+
Sbjct: 68 ATALLNEKAGWLHSQLYK-LLHIHTVPTLRFFHDEQIARGIEMSILIDR 115
>gi|50842967|ref|YP_056194.1| ribosome-binding factor A [Propionibacterium acnes KPA171202]
gi|289426476|ref|ZP_06428219.1| ribosome-binding factor A [Propionibacterium acnes SK187]
gi|289428711|ref|ZP_06430394.1| ribosome-binding factor A [Propionibacterium acnes J165]
gi|295131037|ref|YP_003581700.1| ribosome-binding factor A [Propionibacterium acnes SK137]
gi|61214913|sp|Q6A7M9|RBFA_PROAC RecName: Full=Ribosome-binding factor A
gi|50840569|gb|AAT83236.1| ribosome-binding factor A [Propionibacterium acnes KPA171202]
gi|289153204|gb|EFD01922.1| ribosome-binding factor A [Propionibacterium acnes SK187]
gi|289158109|gb|EFD06329.1| ribosome-binding factor A [Propionibacterium acnes J165]
gi|291376372|gb|ADE00227.1| ribosome-binding factor A [Propionibacterium acnes SK137]
gi|313763599|gb|EFS34963.1| ribosome-binding factor A [Propionibacterium acnes HL013PA1]
gi|313773535|gb|EFS39501.1| ribosome-binding factor A [Propionibacterium acnes HL074PA1]
gi|313793993|gb|EFS42017.1| ribosome-binding factor A [Propionibacterium acnes HL110PA1]
gi|313801380|gb|EFS42631.1| ribosome-binding factor A [Propionibacterium acnes HL110PA2]
gi|313807941|gb|EFS46422.1| ribosome-binding factor A [Propionibacterium acnes HL087PA2]
gi|313811588|gb|EFS49302.1| ribosome-binding factor A [Propionibacterium acnes HL083PA1]
gi|313813351|gb|EFS51065.1| ribosome-binding factor A [Propionibacterium acnes HL025PA1]
gi|313816779|gb|EFS54493.1| ribosome-binding factor A [Propionibacterium acnes HL059PA1]
gi|313819511|gb|EFS57225.1| ribosome-binding factor A [Propionibacterium acnes HL046PA2]
gi|313822166|gb|EFS59880.1| ribosome-binding factor A [Propionibacterium acnes HL036PA1]
gi|313823600|gb|EFS61314.1| ribosome-binding factor A [Propionibacterium acnes HL036PA2]
gi|313825923|gb|EFS63637.1| ribosome-binding factor A [Propionibacterium acnes HL063PA1]
gi|313829604|gb|EFS67318.1| ribosome-binding factor A [Propionibacterium acnes HL063PA2]
gi|313831330|gb|EFS69044.1| ribosome-binding factor A [Propionibacterium acnes HL007PA1]
gi|313834940|gb|EFS72654.1| ribosome-binding factor A [Propionibacterium acnes HL056PA1]
gi|313839899|gb|EFS77613.1| ribosome-binding factor A [Propionibacterium acnes HL086PA1]
gi|314914753|gb|EFS78584.1| ribosome-binding factor A [Propionibacterium acnes HL005PA4]
gi|314919285|gb|EFS83116.1| ribosome-binding factor A [Propionibacterium acnes HL050PA1]
gi|314920805|gb|EFS84636.1| ribosome-binding factor A [Propionibacterium acnes HL050PA3]
gi|314924656|gb|EFS88487.1| ribosome-binding factor A [Propionibacterium acnes HL036PA3]
gi|314930483|gb|EFS94314.1| ribosome-binding factor A [Propionibacterium acnes HL067PA1]
gi|314954359|gb|EFS98765.1| ribosome-binding factor A [Propionibacterium acnes HL027PA1]
gi|314957456|gb|EFT01559.1| ribosome-binding factor A [Propionibacterium acnes HL002PA1]
gi|314962076|gb|EFT06177.1| ribosome-binding factor A [Propionibacterium acnes HL002PA2]
gi|314963655|gb|EFT07755.1| ribosome-binding factor A [Propionibacterium acnes HL082PA1]
gi|314968516|gb|EFT12614.1| ribosome-binding factor A [Propionibacterium acnes HL037PA1]
gi|314974205|gb|EFT18301.1| ribosome-binding factor A [Propionibacterium acnes HL053PA1]
gi|314976686|gb|EFT20781.1| ribosome-binding factor A [Propionibacterium acnes HL045PA1]
gi|314978829|gb|EFT22923.1| ribosome-binding factor A [Propionibacterium acnes HL072PA2]
gi|314984324|gb|EFT28416.1| ribosome-binding factor A [Propionibacterium acnes HL005PA1]
gi|314986514|gb|EFT30606.1| ribosome-binding factor A [Propionibacterium acnes HL005PA2]
gi|314990872|gb|EFT34963.1| ribosome-binding factor A [Propionibacterium acnes HL005PA3]
gi|315079506|gb|EFT51499.1| ribosome-binding factor A [Propionibacterium acnes HL053PA2]
gi|315081264|gb|EFT53240.1| ribosome-binding factor A [Propionibacterium acnes HL078PA1]
gi|315083463|gb|EFT55439.1| ribosome-binding factor A [Propionibacterium acnes HL027PA2]
gi|315087149|gb|EFT59125.1| ribosome-binding factor A [Propionibacterium acnes HL002PA3]
gi|315089320|gb|EFT61296.1| ribosome-binding factor A [Propionibacterium acnes HL072PA1]
gi|315095344|gb|EFT67320.1| ribosome-binding factor A [Propionibacterium acnes HL038PA1]
gi|315099227|gb|EFT71203.1| ribosome-binding factor A [Propionibacterium acnes HL059PA2]
gi|315100467|gb|EFT72443.1| ribosome-binding factor A [Propionibacterium acnes HL046PA1]
gi|315106785|gb|EFT78761.1| ribosome-binding factor A [Propionibacterium acnes HL030PA1]
gi|315109024|gb|EFT81000.1| ribosome-binding factor A [Propionibacterium acnes HL030PA2]
gi|327328393|gb|EGE70155.1| ribosome-binding factor A [Propionibacterium acnes HL096PA2]
gi|327329740|gb|EGE71496.1| ribosome-binding factor A [Propionibacterium acnes HL096PA3]
gi|327334258|gb|EGE75972.1| ribosome-binding factor A [Propionibacterium acnes HL097PA1]
gi|327444180|gb|EGE90834.1| ribosome-binding factor A [Propionibacterium acnes HL043PA2]
gi|327444941|gb|EGE91595.1| ribosome-binding factor A [Propionibacterium acnes HL043PA1]
gi|327446425|gb|EGE93079.1| ribosome-binding factor A [Propionibacterium acnes HL013PA2]
gi|327451986|gb|EGE98640.1| ribosome-binding factor A [Propionibacterium acnes HL092PA1]
gi|327454978|gb|EGF01633.1| ribosome-binding factor A [Propionibacterium acnes HL087PA3]
gi|327457736|gb|EGF04391.1| ribosome-binding factor A [Propionibacterium acnes HL083PA2]
gi|328752181|gb|EGF65797.1| ribosome-binding factor A [Propionibacterium acnes HL020PA1]
gi|328755189|gb|EGF68805.1| ribosome-binding factor A [Propionibacterium acnes HL087PA1]
gi|328758332|gb|EGF71948.1| ribosome-binding factor A [Propionibacterium acnes HL025PA2]
gi|328760051|gb|EGF73631.1| ribosome-binding factor A [Propionibacterium acnes HL099PA1]
gi|332675917|gb|AEE72733.1| ribosome-binding factor A [Propionibacterium acnes 266]
Length = 143
Score = 86.9 bits (215), Expect = 8e-16, Method: Composition-based stats.
Identities = 22/108 (20%), Positives = 51/108 (47%), Gaps = 5/108 (4%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDV 66
+ R ++ +++R + + +D + ++I++V ++ D R AT++ + + D
Sbjct: 4 PNPRVAKLADQIRVVVAETLERR-VKDPRLG--FVTITDVRLTGDSRDATLFWTAMGTDK 60
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLN 114
+AL +R +G+ L+ LRY P L F D + ++ +
Sbjct: 61 EIAGTEAALESAKGMLRSTVGKRLK-LRYAPTLTFVRDATPETAKSIE 107
>gi|261338244|ref|ZP_05966128.1| ribosome-binding factor A [Bifidobacterium gallicum DSM 20093]
gi|270276897|gb|EFA22751.1| ribosome-binding factor A [Bifidobacterium gallicum DSM 20093]
Length = 219
Score = 86.9 bits (215), Expect = 8e-16, Method: Composition-based stats.
Identities = 27/126 (21%), Positives = 58/126 (46%), Gaps = 10/126 (7%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-- 64
+ RA R+ ++ + + + D+ ++ ++I++V ++ DL++A VY +
Sbjct: 3 GTNPRAARIAALIQRVIASN-MESTLHDKRLAN--VTITDVKVTNDLQLAKVYWTTLGQT 59
Query: 65 ---DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
D + R ALN +R +GR LR P+L+F +D +++ ++ L +
Sbjct: 60 GHEDGARKRAQEALNQAKGRLRTLVGRK-AGLRLTPQLQFIFDKVPGEAHEIDDIIMLAR 118
Query: 122 IPVALE 127
E
Sbjct: 119 -KRDEE 123
>gi|68171593|ref|ZP_00544965.1| Ribosome-binding factor A [Ehrlichia chaffeensis str. Sapulpa]
gi|88658124|ref|YP_507376.1| ribosome-binding factor A [Ehrlichia chaffeensis str. Arkansas]
gi|67998988|gb|EAM85667.1| Ribosome-binding factor A [Ehrlichia chaffeensis str. Sapulpa]
gi|88599581|gb|ABD45050.1| ribosome-binding factor A [Ehrlichia chaffeensis str. Arkansas]
Length = 114
Score = 86.9 bits (215), Expect = 9e-16, Method: Composition-based stats.
Identities = 32/114 (28%), Positives = 58/114 (50%), Gaps = 6/114 (5%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD- 65
S R L+V + A+ V++ D + I+IS+V +S D+R ATV++ + +
Sbjct: 5 SESFRNLKVASVLNRAISRVLMQ----DICLFNSHITISKVEVSSDIRDATVFVIISQEC 60
Query: 66 VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ +I LN + FIR I + +LRY+P L F+ D + ++N ++
Sbjct: 61 SDKEALIKELNDSSYFIRKAIFSYV-DLRYIPRLYFKLDYCFDNLVRVNQILES 113
>gi|284006669|emb|CBA71931.1| ribosome-binding factor A [Arsenophonus nasoniae]
Length = 104
Score = 86.5 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 11/96 (11%)
Query: 41 VISISEVCMSVDLRVATVYISLPLDVSPD-------RVISALN-CNIKFIRGRIGRSLRN 92
+ ++S V +S DL A V+++ + I LN K IR +G+++R
Sbjct: 1 MATVSGVEVSRDLAYAKVFVTFLNITDQENETEMVKNGIKVLNGDMAKHIRSLLGKAMR- 59
Query: 93 LRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALEK 128
LR VPEL F YD SL +++ L+ + EK
Sbjct: 60 LRIVPELTFFYDNSLVEGMRMSNLVSN--VIRDDEK 93
>gi|160872477|ref|ZP_02062609.1| ribosome-binding factor A [Rickettsiella grylli]
gi|159121276|gb|EDP46614.1| ribosome-binding factor A [Rickettsiella grylli]
Length = 130
Score = 86.5 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 52/120 (43%), Gaps = 10/120 (8%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-- 64
KNS R R+ + ++ L ILN E D + I+I+ V +S DL A + +
Sbjct: 3 KNSNRVARIADLIKKELSNHILNKEIADSRLK--FITITSVKVSRDLSYADILFTQLSVE 60
Query: 65 -----DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ + + +R + + L +L +P LRF YD L+ +L+ L+
Sbjct: 61 NSDEKQKDKELAVQLVRKASARLRYALAQRL-HLYKIPRLRFFYDDFLEESHRLHCLIEQ 119
>gi|300743968|ref|ZP_07072988.1| ribosome-binding factor A [Rothia dentocariosa M567]
gi|300380329|gb|EFJ76892.1| ribosome-binding factor A [Rothia dentocariosa M567]
Length = 165
Score = 86.5 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 17/100 (17%), Positives = 44/100 (44%), Gaps = 5/100 (5%)
Query: 19 VRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDVSPDRVISALNC 77
++ + + +D + +++++ ++ DL+ AT+Y ++ + + AL
Sbjct: 33 IKVIVAQALERR-VKDPRLG--FVTVTDARVTNDLQHATLYYTVYGSEEEQENTKKALES 89
Query: 78 NIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+R +G+++ R P L F D + + L L+
Sbjct: 90 AKGILRSEVGKNITA-RLTPTLTFVPDEVPVNAYHLEDLL 128
>gi|310778375|ref|YP_003966708.1| ribosome-binding factor A [Ilyobacter polytropus DSM 2926]
gi|309747698|gb|ADO82360.1| ribosome-binding factor A [Ilyobacter polytropus DSM 2926]
Length = 117
Score = 86.5 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 28/113 (24%), Positives = 58/113 (51%), Gaps = 7/113 (6%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL----D 65
+R + +E+ + V+ E ++ I ++S++ V ++ DL+ V S+
Sbjct: 4 QRIAAIEKEMTKVISNVLF-GELKNPKIKG-IVSVTHVRVTQDLKFVDVSFSVLPMAGQT 61
Query: 66 VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
V+ + V+ LN + R RIG ++ +R+VPE+R D S++ K++ L+
Sbjct: 62 VNRETVLKGLNETRGYFRKRIGEEIK-IRFVPEVRVHLDDSIEHAVKISKLLN 113
>gi|163839413|ref|YP_001623818.1| ribosome-binding factor A [Renibacterium salmoninarum ATCC 33209]
gi|162952889|gb|ABY22404.1| ribosome-binding factor A [Renibacterium salmoninarum ATCC 33209]
Length = 167
Score = 86.5 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 23/112 (20%), Positives = 52/112 (46%), Gaps = 5/112 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD-VSPD 69
RA R+ + ++ + + + + + I+I+E ++ DL+ AT+Y ++ +
Sbjct: 27 RAARLAQRIKVIVAEAL-RKQVKQPGVEN--ITITETRVTNDLQHATIYYTIFGGTEARQ 83
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+L + +R +G++L +R P L F D ++ + L+ L K
Sbjct: 84 EAEDSLAKSKGILRREVGKNL-TIRLTPTLEFISDEVPETASHVEELIRLAK 134
>gi|289705312|ref|ZP_06501710.1| ribosome-binding factor A [Micrococcus luteus SK58]
gi|289557975|gb|EFD51268.1| ribosome-binding factor A [Micrococcus luteus SK58]
Length = 150
Score = 86.2 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 56/118 (47%), Gaps = 6/118 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV-SPD 69
RA R+ + ++ + + DR+ + ++++EV ++ DL+ ATVY ++ D +
Sbjct: 6 RAGRLAQRIKVLVAEALRRGVKDDRV---EPVTVTEVRVTNDLQHATVYYTVLGDEATVA 62
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALE 127
+ N +R +GR L +R VP L F DT ++ L ++ + K E
Sbjct: 63 AAHEGIQDNRGILRREVGRGL-TIRLVPTLEFVADTVPEAAAHLEDVLRVAK-ERDAE 118
>gi|225021168|ref|ZP_03710360.1| hypothetical protein CORMATOL_01180 [Corynebacterium matruchotii
ATCC 33806]
gi|224946075|gb|EEG27284.1| hypothetical protein CORMATOL_01180 [Corynebacterium matruchotii
ATCC 33806]
Length = 172
Score = 86.2 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 28/125 (22%), Positives = 56/125 (44%), Gaps = 10/125 (8%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL--- 64
+S RA R+ + + + I E +D ++ I+I++ ++ DL ATV+ ++
Sbjct: 30 DSARAHRLAKRILHIVASAIER-EIKDPGLAY--ITITDTRVTGDLHDATVFYTVRGKNI 86
Query: 65 --DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
+ + AL +R +G L ++R+ P L F DT +S ++ L+ +
Sbjct: 87 ADEPDTEAAAQALTRAKGQLRKIVGDQL-SVRFTPTLTFELDTMPESSARMEELLARAR- 144
Query: 123 PVALE 127
E
Sbjct: 145 KRDAE 149
>gi|256824994|ref|YP_003148954.1| ribosome-binding factor A [Kytococcus sedentarius DSM 20547]
gi|256688387|gb|ACV06189.1| ribosome-binding factor A [Kytococcus sedentarius DSM 20547]
Length = 143
Score = 86.2 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 24/112 (21%), Positives = 52/112 (46%), Gaps = 5/112 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP-D 69
RA ++ + +R L + +D + +++I++ ++ DL+ ATV+ ++ D +
Sbjct: 6 RARKIADRIRDLLAENLA-AVVKDPDLG--MVTITDTRVTPDLQQATVFWTVLGDEDQRE 62
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+ L + +R IG+ L +R P L F +D + L ++ K
Sbjct: 63 KSAELLQRHRGKLRTLIGKGL-GIRLTPSLEFVHDALPEDAAHLEDVLRRAK 113
>gi|195941988|ref|ZP_03087370.1| ribosome-binding factor A (rbfA) [Borrelia burgdorferi 80a]
gi|218249355|ref|YP_002375301.1| ribosome-binding factor A [Borrelia burgdorferi ZS7]
gi|221217603|ref|ZP_03589072.1| ribosome-binding factor A [Borrelia burgdorferi 72a]
gi|223889335|ref|ZP_03623922.1| ribosome-binding factor A [Borrelia burgdorferi 64b]
gi|224533067|ref|ZP_03673672.1| ribosome-binding factor A [Borrelia burgdorferi WI91-23]
gi|224533421|ref|ZP_03674014.1| ribosome-binding factor A [Borrelia burgdorferi CA-11.2a]
gi|225549404|ref|ZP_03770376.1| ribosome-binding factor A [Borrelia burgdorferi 94a]
gi|225550242|ref|ZP_03771201.1| ribosome-binding factor A [Borrelia burgdorferi 118a]
gi|226320849|ref|ZP_03796401.1| ribosome-binding factor A [Borrelia burgdorferi 29805]
gi|226321267|ref|ZP_03796795.1| ribosome-binding factor A [Borrelia burgdorferi Bol26]
gi|20981703|sp|O51742|RBFA_BORBU RecName: Full=Ribosome-binding factor A
gi|226736639|sp|B7J0P8|RBFA_BORBZ RecName: Full=Ribosome-binding factor A
gi|218164543|gb|ACK74604.1| ribosome-binding factor A [Borrelia burgdorferi ZS7]
gi|221192549|gb|EEE18767.1| ribosome-binding factor A [Borrelia burgdorferi 72a]
gi|223885256|gb|EEF56359.1| ribosome-binding factor A [Borrelia burgdorferi 64b]
gi|224512003|gb|EEF82399.1| ribosome-binding factor A [Borrelia burgdorferi WI91-23]
gi|224513383|gb|EEF83741.1| ribosome-binding factor A [Borrelia burgdorferi CA-11.2a]
gi|225369110|gb|EEG98564.1| ribosome-binding factor A [Borrelia burgdorferi 118a]
gi|225370032|gb|EEG99473.1| ribosome-binding factor A [Borrelia burgdorferi 94a]
gi|226233299|gb|EEH32050.1| ribosome-binding factor A [Borrelia burgdorferi Bol26]
gi|226233715|gb|EEH32444.1| ribosome-binding factor A [Borrelia burgdorferi 29805]
gi|312148458|gb|ADQ31117.1| ribosome-binding factor A [Borrelia burgdorferi JD1]
gi|312149168|gb|ADQ29239.1| ribosome-binding factor A [Borrelia burgdorferi N40]
Length = 120
Score = 86.2 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 27/100 (27%), Positives = 51/100 (51%), Gaps = 3/100 (3%)
Query: 19 VRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI-SLPLDVSPDRVISALNC 77
+ + +I++ +D I +++ +V S DL A V++ S+ S D + ALN
Sbjct: 14 IAQEIGNLIVSGGIKDPRIHS-FLTVVKVEFSKDLINAKVFMGSIKEGASLDNAVKALNN 72
Query: 78 NIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
FI+ +I + ++ +R P+L F D SL + +N L+
Sbjct: 73 AKGFIQSQIIKRIK-VRSTPKLLFVKDDSLSKSFYVNKLI 111
>gi|194335551|ref|YP_002017345.1| ribosome-binding factor A [Pelodictyon phaeoclathratiforme BU-1]
gi|238693376|sp|B4SCE8|RBFA_PELPB RecName: Full=Ribosome-binding factor A
gi|194308028|gb|ACF42728.1| ribosome-binding factor A [Pelodictyon phaeoclathratiforme BU-1]
Length = 119
Score = 86.2 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 26/112 (23%), Positives = 48/112 (42%), Gaps = 6/112 (5%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVS 67
S R RV ++ L ++ S +I++ EV ++ DL +A Y+S +
Sbjct: 2 SIRTERVASLLQQELGAILQKEL---PR-SGPIITVVEVKITADLSIARAYVSIIGTPEE 57
Query: 68 PDRVISALNCNIKFIRGRIGRSLR-NLRYVPELRFRYDTSLQSYWKLNALMC 118
++ L K IR + +R + R +PEL F D + ++ L+
Sbjct: 58 QQEAMALLQDKTKSIRKILSSKIRHHFRRIPELEFHEDHLYERANRIEQLLS 109
>gi|119963960|ref|YP_947329.1| ribosome-binding factor A [Arthrobacter aurescens TC1]
gi|166218418|sp|A1R517|RBFA_ARTAT RecName: Full=Ribosome-binding factor A
gi|119950819|gb|ABM09730.1| putative ribosome-binding factor A [Arthrobacter aurescens TC1]
Length = 167
Score = 86.2 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 23/112 (20%), Positives = 50/112 (44%), Gaps = 5/112 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV-SPD 69
RA ++ + ++ + + +D + I++++ ++ DL+ AT+Y ++ D +
Sbjct: 6 RAAKLAQRIKVVVAEALGRR-VKDPRVES--ITVTDARVTNDLQHATIYYTVFGDDVAQA 62
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
AL +R +GR++ +R P L F D + L L+ K
Sbjct: 63 DAARALEKAKGVLRQEVGRNI-TVRLTPTLEFVADQIPVNASNLEELLREAK 113
>gi|288574928|ref|ZP_06393285.1| ribosome-binding factor A [Dethiosulfovibrio peptidovorans DSM
11002]
gi|288570669|gb|EFC92226.1| ribosome-binding factor A [Dethiosulfovibrio peptidovorans DSM
11002]
Length = 146
Score = 86.2 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 33/112 (29%), Positives = 54/112 (48%), Gaps = 4/112 (3%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
P R RV +E++ + +L +D R V ++ V + DL+ A VY +
Sbjct: 18 PMAGFRIERVNKELQREISR-LLEFSVKDENAKRAV--VTGVDCAKDLKSAKVYFTTISP 74
Query: 66 VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
V +L F+R + ++LR +R VPELRF YDTS + ++ L+
Sbjct: 75 EDRRSVSESLKKVRTFLRSSLAQTLR-IRTVPELRFIYDTSGEYGRSIDRLL 125
>gi|257784632|ref|YP_003179849.1| ribosome-binding factor A [Atopobium parvulum DSM 20469]
gi|257473139|gb|ACV51258.1| ribosome-binding factor A [Atopobium parvulum DSM 20469]
Length = 136
Score = 86.2 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 5/111 (4%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
K ++ + R E R L W++L E D + +++I+ +SVD VY+S D
Sbjct: 2 KQNQFSRRTNEVAREKLSWILLF-EISDPDL--QLVTITSCEVSVDKSFMRVYVSCEPD- 57
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
++V++AL IR +G +L N R PEL F+ DT+ ++ +
Sbjct: 58 RYEKVLAALKRAKGRIRSLLGHAL-NWRVTPELDFKIDTTTDEAERIAQAL 107
>gi|139436988|ref|ZP_01771148.1| Hypothetical protein COLAER_00122 [Collinsella aerofaciens ATCC
25986]
gi|133776635|gb|EBA40455.1| Hypothetical protein COLAER_00122 [Collinsella aerofaciens ATCC
25986]
Length = 136
Score = 86.2 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 37/122 (30%), Positives = 61/122 (50%), Gaps = 5/122 (4%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
K ++ R+GE++R L +++L E D + D+++++ V ++VD A VY+S
Sbjct: 2 KQTQATRRLGEQLREKLGYILLF-EVSDPRL--DLVTLTAVEVAVDRSFARVYVSC-DAS 57
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVAL 126
D V+ AL IR + RSL R PEL FR D S ++ + +A+
Sbjct: 58 RYDEVMEALASAKGRIRSLLARSLDW-RVTPELDFRIDRSTDEAERITRALENVPATLAI 116
Query: 127 EK 128
EK
Sbjct: 117 EK 118
>gi|184201249|ref|YP_001855456.1| ribosome-binding factor A [Kocuria rhizophila DC2201]
gi|238689216|sp|B2GKJ1|RBFA_KOCRD RecName: Full=Ribosome-binding factor A
gi|183581479|dbj|BAG29950.1| ribosome-binding factor A [Kocuria rhizophila DC2201]
Length = 153
Score = 85.8 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 18/104 (17%), Positives = 43/104 (41%), Gaps = 5/104 (4%)
Query: 19 VRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP-DRVISALNC 77
++ + + +D + +++++ ++ DL+ AT+Y ++ D AL
Sbjct: 14 IKVIVAQALERR-VKDPRLG--FVTVTDARVTNDLQHATLYYTVYGDEEQRADTARALES 70
Query: 78 NIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+R +G+++ R P L F D +L L+ +
Sbjct: 71 AKGVLRAEVGKNITA-RLTPTLTFVADEIPADAARLEELLRTAR 113
>gi|182414630|ref|YP_001819696.1| ribosome-binding factor A [Opitutus terrae PB90-1]
gi|238692917|sp|B1ZX44|RBFA_OPITP RecName: Full=Ribosome-binding factor A
gi|177841844|gb|ACB76096.1| ribosome-binding factor A [Opitutus terrae PB90-1]
Length = 122
Score = 85.8 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 26/110 (23%), Positives = 52/110 (47%), Gaps = 6/110 (5%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD-VS 67
S R LRV E ++ L ++ I+I+E+ ++ DLR A V++S+
Sbjct: 2 SNRTLRVNELIQRELSEILRKRY----QSEATAITITELRVAPDLRDARVFVSIVGSAEE 57
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
D + L + +R +GR + L+Y+P+ + D S + ++ ++
Sbjct: 58 QDEKLRWLRAHAGELRYEVGRRI-VLKYLPKFEYVLDHSPEKSARILQVL 106
>gi|216264378|ref|ZP_03436370.1| ribosome-binding factor A [Borrelia burgdorferi 156a]
gi|215980851|gb|EEC21658.1| ribosome-binding factor A [Borrelia burgdorferi 156a]
Length = 120
Score = 85.8 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 27/100 (27%), Positives = 51/100 (51%), Gaps = 3/100 (3%)
Query: 19 VRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI-SLPLDVSPDRVISALNC 77
+ + +I++ +D I +++ +V S DL A V++ S+ S D + ALN
Sbjct: 14 IAQEIGNLIVSGGIKDPRIHS-FLTVVKVKFSKDLINAKVFMGSIKEGASLDNAVKALNN 72
Query: 78 NIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
FI+ +I + ++ +R P+L F D SL + +N L+
Sbjct: 73 AKGFIQSQIIKRIK-VRSTPKLLFVKDDSLSKSFYVNKLI 111
>gi|154249099|ref|YP_001409924.1| ribosome-binding factor A [Fervidobacterium nodosum Rt17-B1]
gi|171769324|sp|A7HK34|RBFA_FERNB RecName: Full=Ribosome-binding factor A
gi|154153035|gb|ABS60267.1| ribosome-binding factor A [Fervidobacterium nodosum Rt17-B1]
Length = 125
Score = 85.8 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 29/108 (26%), Positives = 55/108 (50%), Gaps = 6/108 (5%)
Query: 17 EEVRSALMWVILNNEFQDRLIS--RDVISISEVCMSVDLRVATVYISLPLDVSP-DRVIS 73
E+R L ++ E +D I + +I+IS V +S D R A VY+S+ D + V++
Sbjct: 12 SEIRKVLSEALM--EMKDPNIDPMKSLITISRVEVSKDKRYADVYVSVLGDEAKRKDVVN 69
Query: 74 ALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+ R + +++R + PELRF+ D +++ ++ L+ K
Sbjct: 70 YFEQKKGYFRTYVAKNIR-MYTAPELRFKEDKGIEATVRIGQLLDSIK 116
>gi|294790401|ref|ZP_06755559.1| ribosome-binding factor A [Scardovia inopinata F0304]
gi|294458298|gb|EFG26651.1| ribosome-binding factor A [Scardovia inopinata F0304]
Length = 188
Score = 85.8 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 23/118 (19%), Positives = 52/118 (44%), Gaps = 9/118 (7%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
+ + R+ R+ ++ + + + D + ++I+EV ++ D+++A +Y + D
Sbjct: 2 ARTNPRSARIAGVIQRVVATAVA-TDLHDPRLKS--VTITEVRVTNDMQIARIYWTQLGD 58
Query: 66 V-----SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
R +AL +R +GRS LR P+L F +D ++ ++
Sbjct: 59 EGRAQGERKRAAAALKQASGHLRTLVGRS-TGLRLTPQLEFIFDQVPAQATEVEDVLA 115
>gi|289522939|ref|ZP_06439793.1| ribosome-binding factor A [Anaerobaculum hydrogeniformans ATCC
BAA-1850]
gi|289503482|gb|EFD24646.1| ribosome-binding factor A [Anaerobaculum hydrogeniformans ATCC
BAA-1850]
Length = 128
Score = 85.4 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 27/107 (25%), Positives = 52/107 (48%), Gaps = 4/107 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
R RV +E+ + ++NN +D ++ + + I+EV + DL +A VY +
Sbjct: 5 RIERVNKEMLREISEFLVNNA-KDPMLKK--VVITEVRCTNDLSIAKVYFTSIDKSDLKE 61
Query: 71 VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ +LN + G + R +R LR+ P+L F D + ++ L+
Sbjct: 62 IGDSLNSLAGALSGIVCRQMR-LRFAPKLVFVVDDTEDRAQRIEELL 107
>gi|187918656|ref|YP_001884222.1| ribosome-binding factor A [Borrelia hermsii DAH]
gi|238689300|sp|B2S1E6|RBFA_BORHD RecName: Full=Ribosome-binding factor A
gi|119861504|gb|AAX17299.1| ribosome-binding factor A [Borrelia hermsii DAH]
Length = 119
Score = 85.4 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 28/110 (25%), Positives = 53/110 (48%), Gaps = 3/110 (2%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI-SLPLDVSPD 69
R ++ + + +IL +D + +++ V +S DL A V+I S+ S D
Sbjct: 6 RKSKLESLLVQEIGNLILTKGIKDPRVHE-FLTVVRVEISNDLINAKVFIGSIKEGASLD 64
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ ALN FI+G I + +R +R P+L F D ++ + +N ++
Sbjct: 65 NAVKALNNAKGFIQGEIVKRIR-VRNTPKLSFLRDDTISKAFYVNKIIEN 113
>gi|51246464|ref|YP_066348.1| ribosome-binding factor A [Desulfotalea psychrophila LSv54]
gi|61214924|sp|Q6AJY5|RBFA_DESPS RecName: Full=Ribosome-binding factor A
gi|50877501|emb|CAG37341.1| related to ribosome-binding factor A [Desulfotalea psychrophila
LSv54]
Length = 140
Score = 85.4 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 28/109 (25%), Positives = 52/109 (47%), Gaps = 5/109 (4%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP- 68
+R+ RV + +R L ++L + +D + + IS V + DL + +Y ++
Sbjct: 22 KRSTRVADAIRKELAVLLL-EKIRDPKLQD--VGISRVTATDDLTIVKIYYTIYGPHKHV 78
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
V A FIR + R+L N+RY P L+F YD + + ++ +
Sbjct: 79 KAVDKAFLAATGFIRSHLARTL-NMRYTPNLQFCYDKTAEKVAEIENIF 126
>gi|305681303|ref|ZP_07404110.1| ribosome-binding factor A [Corynebacterium matruchotii ATCC 14266]
gi|305659508|gb|EFM49008.1| ribosome-binding factor A [Corynebacterium matruchotii ATCC 14266]
Length = 145
Score = 85.4 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 28/125 (22%), Positives = 56/125 (44%), Gaps = 10/125 (8%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL--- 64
+S RA R+ + + + I E +D ++ I+I++ ++ DL ATV+ ++
Sbjct: 3 DSARAHRLAKRILHIVASAIER-EIKDPGLAY--ITITDTRVTGDLHDATVFYTVRGKNI 59
Query: 65 --DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
+ + AL +R +G L ++R+ P L F DT +S ++ L+ +
Sbjct: 60 ADEPDTEAAAQALTRAKGQLRKIVGDQL-SVRFTPTLTFELDTMPESSARMEELLARAR- 117
Query: 123 PVALE 127
E
Sbjct: 118 KRDAE 122
>gi|187735456|ref|YP_001877568.1| ribosome-binding factor A [Akkermansia muciniphila ATCC BAA-835]
gi|226736634|sp|B2UQQ2|RBFA_AKKM8 RecName: Full=Ribosome-binding factor A
gi|187425508|gb|ACD04787.1| ribosome-binding factor A [Akkermansia muciniphila ATCC BAA-835]
Length = 125
Score = 85.4 bits (211), Expect = 3e-15, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 55/122 (45%), Gaps = 10/122 (8%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
SRR +V E +R + I D ++++ EV ++ DL+ V++ + ++P
Sbjct: 2 SRRTDKVNELLRREIGTTIQR----DFEFPGTIVTVIEVEVTDDLKEGKVWVGVVGKMAP 57
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL-----PKIP 123
+V+ LN I+ + R + LR P L FR D S Q L L+ PK P
Sbjct: 58 SQVLEKLNSRHGLIQSAVARRV-VLRNTPRLTFRLDDSAQRGVDLVNLLEDIDKNLPKAP 116
Query: 124 VA 125
A
Sbjct: 117 PA 118
>gi|126640416|ref|YP_001083400.1| ribosome-binding factor A [Acinetobacter baumannii ATCC 17978]
Length = 99
Score = 85.0 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 9/83 (10%)
Query: 43 SISEVCMSVDLRVATVYISLPL--------DVSPDRVISALNCNIKFIRGRIGRSLRNLR 94
+IS V +S DL A VY+++ +V+ + LN F+R + R ++ R
Sbjct: 2 TISGVKVSPDLGYADVYVTVMGRELSDDQNEVAHRETLDILNKASGFLRQELSRRIKT-R 60
Query: 95 YVPELRFRYDTSLQSYWKLNALM 117
P LRF YD + + L+
Sbjct: 61 ITPRLRFHYDKTNAYGNYMFGLI 83
>gi|84498578|ref|ZP_00997341.1| ribosome-binding factor A [Janibacter sp. HTCC2649]
gi|84381111|gb|EAP96996.1| ribosome-binding factor A [Janibacter sp. HTCC2649]
Length = 169
Score = 85.0 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 25/109 (22%), Positives = 52/109 (47%), Gaps = 5/109 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV-SPD 69
RA +V + + L+ L + +D + ++I++V ++ DL+ A+V+ ++ D
Sbjct: 6 RARKVADRI-KTLIAAGLGSIIKDPDLG--FVTITDVRVTNDLQHASVFYTVFGDDAQRA 62
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ L N +R +G++L +R P L F D ++ L L+
Sbjct: 63 KTTYLLEENRGKLRSHVGKNL-GIRLTPSLEFIADAIPETAAHLEDLLR 110
>gi|194333212|ref|YP_002015072.1| ribosome-binding factor A [Prosthecochloris aestuarii DSM 271]
gi|238693312|sp|B4S4S7|RBFA_PROA2 RecName: Full=Ribosome-binding factor A
gi|194311030|gb|ACF45425.1| ribosome-binding factor A [Prosthecochloris aestuarii DSM 271]
Length = 122
Score = 85.0 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 52/122 (42%), Gaps = 6/122 (4%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
S R +V ++ L + E + S +++I EV ++ DL +A VY+SL
Sbjct: 2 SIRTGKVSSLLQKELSSIF---EKELPR-SGPLLTIVEVKVTADLGIARVYVSLIGSEKE 57
Query: 69 DRVI-SALNCNIKFIRGRIGRSLRN-LRYVPELRFRYDTSLQSYWKLNALMCLPKIPVAL 126
++ L K+IR + +R+ R +PEL F D ++ L+
Sbjct: 58 RGLLMEHLQNETKYIRKLLSSRIRHQFRRIPELEFYEDEQYDKARRIEELLKEALNRPGE 117
Query: 127 EK 128
E+
Sbjct: 118 EQ 119
>gi|293604239|ref|ZP_06686647.1| ribosome-binding factor A [Achromobacter piechaudii ATCC 43553]
gi|292817464|gb|EFF76537.1| ribosome-binding factor A [Achromobacter piechaudii ATCC 43553]
Length = 133
Score = 85.0 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 24/109 (22%), Positives = 53/109 (48%), Gaps = 5/109 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
R LR+ ++++ L +I + +I++S V +S D A V+ ++ L P+
Sbjct: 12 RNLRLADQIQKDLAEIIQREI---DMSRAGLITLSGVELSTDYAHAKVWFTV-LGAEPEA 67
Query: 71 VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ LN ++ ++ + L ++ VP LRF +D + +++ L+
Sbjct: 68 ATALLNEKAGWLHSQLYK-LLHIHTVPTLRFFHDEQIARGIEMSILIDR 115
>gi|25028433|ref|NP_738487.1| ribosome-binding factor A [Corynebacterium efficiens YS-314]
gi|23493718|dbj|BAC18687.1| putative ribosome-binding factor A [Corynebacterium efficiens
YS-314]
Length = 189
Score = 85.0 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 58/122 (47%), Gaps = 10/122 (8%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-----LPLD 65
RA R+ + +++ + I E +DR + I+I++V M+ DL ATV+ + + +
Sbjct: 46 RAARMAKRIQTIVASAIER-EIKDRRLEY--ITITDVTMTGDLHDATVFYTVRGENVGDE 102
Query: 66 VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
+ AL+ +R +G L +R+ P L +R DT ++ + AL+ +
Sbjct: 103 PDLEAAAEALHRARGQLRKIVGEQL-GVRFTPTLTYRVDTVPEASAHMEALLERAR-QRD 160
Query: 126 LE 127
E
Sbjct: 161 AE 162
>gi|289549104|ref|YP_003474092.1| ribosome-binding factor A [Thermocrinis albus DSM 14484]
gi|289182721|gb|ADC89965.1| ribosome-binding factor A [Thermocrinis albus DSM 14484]
Length = 107
Score = 84.6 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 27/104 (25%), Positives = 58/104 (55%), Gaps = 4/104 (3%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPD 69
RR R+ E ++ + +IL + +D + + ++ + +S D++ TVY + + +
Sbjct: 3 RRKERLRELLKQEIANLILYH-LKDPRLKE--VVVTRIELSPDMKDMTVYYTTLTEGEEE 59
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKL 113
++ AL FIR ++ +SL +++YVP +RF++D L+ +L
Sbjct: 60 KIQKALEQAKGFIRHQLMKSL-DIKYVPNMRFKFDKELKQMERL 102
>gi|183601976|ref|ZP_02963345.1| ribosome-binding factor A [Bifidobacterium animalis subsp. lactis
HN019]
gi|219682888|ref|YP_002469271.1| ribosome-binding factor A [Bifidobacterium animalis subsp. lactis
AD011]
gi|241190465|ref|YP_002967859.1| ribosome-binding factor A [Bifidobacterium animalis subsp. lactis
Bl-04]
gi|241195871|ref|YP_002969426.1| ribosome-binding factor A [Bifidobacterium animalis subsp. lactis
DSM 10140]
gi|183218861|gb|EDT89503.1| ribosome-binding factor A [Bifidobacterium animalis subsp. lactis
HN019]
gi|219620538|gb|ACL28695.1| ribosome-binding factor A [Bifidobacterium animalis subsp. lactis
AD011]
gi|240248857|gb|ACS45797.1| ribosome-binding factor A [Bifidobacterium animalis subsp. lactis
Bl-04]
gi|240250425|gb|ACS47364.1| ribosome-binding factor A [Bifidobacterium animalis subsp. lactis
DSM 10140]
gi|289178189|gb|ADC85435.1| Ribosome-binding factor A [Bifidobacterium animalis subsp. lactis
BB-12]
gi|295793452|gb|ADG32987.1| ribosome-binding factor A [Bifidobacterium animalis subsp. lactis
V9]
Length = 217
Score = 84.6 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 23/126 (18%), Positives = 53/126 (42%), Gaps = 10/126 (7%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
+ RA R+ ++ + + + D+ + ++I++V ++ DL++A +Y +
Sbjct: 3 GTNSRAARIAALIQRVIASN-MESTLHDKRLKN--VTITDVKVTNDLQLAKIYWTTLSRD 59
Query: 67 SPDR-----VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+ ALN +R +G LR P+L+F +D ++ ++ L +
Sbjct: 60 GHEEGERKRAKEALNQAKGRLRTMVGAK-AGLRLTPQLQFIFDEVPGEAHEIEDILSLAR 118
Query: 122 IPVALE 127
E
Sbjct: 119 -KRDEE 123
>gi|50954464|ref|YP_061752.1| ribosome-binding factor A [Leifsonia xyli subsp. xyli str. CTCB07]
gi|61214921|sp|Q6AG48|RBFA_LEIXX RecName: Full=Ribosome-binding factor A
gi|50950946|gb|AAT88647.1| ribosome-binding factor A [Leifsonia xyli subsp. xyli str. CTCB07]
Length = 142
Score = 84.6 bits (209), Expect = 5e-15, Method: Composition-based stats.
Identities = 21/110 (19%), Positives = 52/110 (47%), Gaps = 5/110 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-DVSPD 69
RA ++ + ++ + + +D + ++I++V ++ DL+ ATV+ ++ D
Sbjct: 6 RARKLADRIKVIVAERLDRG-LRDPRLG--FVTITDVQVTGDLQHATVFYTVYGTDQERA 62
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+AL +R +G+++ R P L+F+ D ++ + L+
Sbjct: 63 DTAAALTAATGMLRSEVGKNITA-RLTPTLQFQLDAIPENAAHIEDLLRQ 111
>gi|288921724|ref|ZP_06415991.1| ribosome-binding factor A [Frankia sp. EUN1f]
gi|288346896|gb|EFC81206.1| ribosome-binding factor A [Frankia sp. EUN1f]
Length = 191
Score = 84.2 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 23/118 (19%), Positives = 51/118 (43%), Gaps = 6/118 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS-PD 69
RA R+ +R + + +D + +++I++ ++ DL AT++ ++ D
Sbjct: 6 RARRLAVRIREVVASTLERG-VKDPRLG--MVTITDARVTPDLVDATIFYTVYGDDEARQ 62
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALE 127
+AL +R ++GR+ ++ P L F +D L L+ + + E
Sbjct: 63 ASAAALESAKGMLRSQVGRA-TGVKVTPTLTFVHDRLPDDARHLEDLLSVAR-RRDAE 118
>gi|216263566|ref|ZP_03435561.1| ribosome-binding factor A [Borrelia afzelii ACA-1]
gi|215980410|gb|EEC21231.1| ribosome-binding factor A [Borrelia afzelii ACA-1]
Length = 120
Score = 84.2 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 27/100 (27%), Positives = 51/100 (51%), Gaps = 3/100 (3%)
Query: 19 VRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI-SLPLDVSPDRVISALNC 77
+ + +I++ +D I +++ +V S DL A V+I S+ S D + ALN
Sbjct: 14 IAQEIGNLIVSRGIKDPRIHS-FLTVVKVEFSKDLINAKVFIGSIKEGASLDNAVKALNN 72
Query: 78 NIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
FI+ +I + ++ +R P+L F D SL + +N ++
Sbjct: 73 AKGFIQSQIIKRIK-VRSTPKLLFIKDDSLSKSFYVNKII 111
>gi|219685678|ref|ZP_03540492.1| ribosome-binding factor A [Borrelia garinii Far04]
gi|219672794|gb|EED29819.1| ribosome-binding factor A [Borrelia garinii Far04]
Length = 120
Score = 84.2 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 26/100 (26%), Positives = 51/100 (51%), Gaps = 3/100 (3%)
Query: 19 VRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI-SLPLDVSPDRVISALNC 77
+ + +I++ +D I +++ +V S DL A V++ S+ S D + ALN
Sbjct: 14 IAQEIGNLIVSGGIKDPRIHS-FLTVVKVEFSKDLINAKVFMGSIKEGASLDNAVKALNN 72
Query: 78 NIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
FI+ +I + ++ +R P+L F D SL + +N ++
Sbjct: 73 AKGFIQSQIIKRIK-VRSTPKLLFVKDDSLSKSFYVNKII 111
>gi|33602221|ref|NP_889781.1| ribosome-binding factor A [Bordetella bronchiseptica RB50]
gi|39931852|sp|Q7WHG3|RBFA_BORBR RecName: Full=Ribosome-binding factor A
gi|33576659|emb|CAE33737.1| ribosome-binding factor A [Bordetella bronchiseptica RB50]
Length = 133
Score = 84.2 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 26/109 (23%), Positives = 53/109 (48%), Gaps = 5/109 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
R LR+ ++++ L +I + +I++S V +S D A VY ++ L PD
Sbjct: 12 RNLRLADQIQKDLAGIIQREI---DMTRAGLITLSGVELSADYAHAKVYFTV-LGAEPDT 67
Query: 71 VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ LN ++ ++ + L ++ VP LRF +D + +++ L+
Sbjct: 68 AAALLNEKAGWLHSQLYK-LLHIHTVPTLRFVHDPQITRGIEMSMLIDR 115
>gi|33592376|ref|NP_880020.1| ribosome-binding factor A [Bordetella pertussis Tohama I]
gi|39931827|sp|Q7VYR1|RBFA_BORPE RecName: Full=Ribosome-binding factor A
gi|33572021|emb|CAE41544.1| ribosome-binding factor A [Bordetella pertussis Tohama I]
gi|332381792|gb|AEE66639.1| ribosome-binding factor A [Bordetella pertussis CS]
Length = 133
Score = 84.2 bits (208), Expect = 6e-15, Method: Composition-based stats.
Identities = 26/109 (23%), Positives = 53/109 (48%), Gaps = 5/109 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
R LR+ ++++ L +I + +I++S V +S D A VY ++ L PD
Sbjct: 12 RNLRLADQIQKDLAGIIQREI---DMTRAGLITLSGVELSADYAHAKVYFTV-LGAEPDT 67
Query: 71 VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ LN ++ ++ + L ++ VP LRF +D + +++ L+
Sbjct: 68 AAALLNEKAGWLHSQLYK-LLHIHTVPTLRFVHDPQITRGIEMSVLIDR 115
>gi|111115637|ref|YP_710255.1| ribosome-binding factor A [Borrelia afzelii PKo]
gi|123145625|sp|Q0SM49|RBFA_BORAP RecName: Full=Ribosome-binding factor A
gi|110890911|gb|ABH02079.1| ribosome-binding factor A [Borrelia afzelii PKo]
Length = 120
Score = 84.2 bits (208), Expect = 6e-15, Method: Composition-based stats.
Identities = 27/100 (27%), Positives = 51/100 (51%), Gaps = 3/100 (3%)
Query: 19 VRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI-SLPLDVSPDRVISALNC 77
+ + +I++ +D I +++ +V S DL A V+I S+ S D + ALN
Sbjct: 14 IAQEIGNLIVSRGIKDPRIHS-FLTVVKVEFSKDLINAKVFIGSIKEGASLDNAVKALNN 72
Query: 78 NIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
FI+ +I + ++ +R P+L F D SL + +N ++
Sbjct: 73 AKGFIQSQIIKRIK-VRSTPKLLFVKDDSLSKSFYVNKII 111
>gi|182676605|sp|A9WPV9|RBFA_RENSM RecName: Full=Ribosome-binding factor A
Length = 146
Score = 84.2 bits (208), Expect = 6e-15, Method: Composition-based stats.
Identities = 23/112 (20%), Positives = 52/112 (46%), Gaps = 5/112 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD-VSPD 69
RA R+ + ++ + + + + + I+I+E ++ DL+ AT+Y ++ +
Sbjct: 6 RAARLAQRIKVIVAEAL-RKQVKQPGVEN--ITITETRVTNDLQHATIYYTIFGGTEARQ 62
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+L + +R +G++L +R P L F D ++ + L+ L K
Sbjct: 63 EAEDSLAKSKGILRREVGKNL-TIRLTPTLEFISDEVPETASHVEELIRLAK 113
>gi|319778225|ref|YP_004129138.1| Ribosome-binding factor A [Taylorella equigenitalis MCE9]
gi|317108249|gb|ADU90995.1| Ribosome-binding factor A [Taylorella equigenitalis MCE9]
Length = 139
Score = 83.8 bits (207), Expect = 6e-15, Method: Composition-based stats.
Identities = 24/116 (20%), Positives = 52/116 (44%), Gaps = 6/116 (5%)
Query: 2 KNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS 61
++K R +R+ ++++ L ++I +I+++ V +S D A VY S
Sbjct: 3 RHKTKTGPSRQIRIADQIQKDLAFLIQREL----GTRHGLITLTRVDLSADYAHAKVYFS 58
Query: 62 LPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ L LN ++ + + + ++ VP LRF +D L +++ L+
Sbjct: 59 V-LGAEAMNAQEVLNEKAGYLHSLLYK-MLHIHTVPTLRFFHDDQLSHVIEMSKLI 112
>gi|300775162|ref|ZP_07085024.1| ribosome-binding factor A [Chryseobacterium gleum ATCC 35910]
gi|300505902|gb|EFK37038.1| ribosome-binding factor A [Chryseobacterium gleum ATCC 35910]
Length = 119
Score = 83.8 bits (207), Expect = 7e-15, Method: Composition-based stats.
Identities = 24/113 (21%), Positives = 52/113 (46%), Gaps = 3/113 (2%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
S R +V + ++ + + + ++S+S+V ++ DL +A +Y+S+
Sbjct: 1 MESNRQRKVAQIIQEDFAELFRKQAAESK--QSILVSVSDVKVTADLGIAKIYLSIFPQE 58
Query: 67 SPDRVISALNCNIKFIRGRIGRSL-RNLRYVPELRFRYDTSLQSYWKLNALMC 118
V+ + N R IG+ + + +R +P+L F DT+L +L +
Sbjct: 59 FRTAVMKEIEENKPQYRNFIGQKMAKQVRIIPQLNFYLDTALDDVERLERELR 111
>gi|296117677|ref|ZP_06836261.1| ribosome-binding factor A [Corynebacterium ammoniagenes DSM 20306]
gi|295969408|gb|EFG82649.1| ribosome-binding factor A [Corynebacterium ammoniagenes DSM 20306]
Length = 144
Score = 83.8 bits (207), Expect = 7e-15, Method: Composition-based stats.
Identities = 27/122 (22%), Positives = 57/122 (46%), Gaps = 10/122 (8%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-----D 65
RA R+ + +++ + I E +DR + +++I++ ++ DL ATV+ ++ +
Sbjct: 6 RAARMAKRIQTIVATAIDR-EIKDRRLE--LVTITDTRVTGDLHDATVFYTVRGVDIDSE 62
Query: 66 VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
D+ ALN +R +G L +R+ P L F +D ++ + L+ +
Sbjct: 63 PDYDQAAEALNRAKGQLRKIVGDQL-QVRFTPTLSFEFDAVPEASAHMEELLARAR-ARD 120
Query: 126 LE 127
E
Sbjct: 121 EE 122
>gi|315502528|ref|YP_004081415.1| ribosome-binding factor a [Micromonospora sp. L5]
gi|315409147|gb|ADU07264.1| ribosome-binding factor A [Micromonospora sp. L5]
Length = 163
Score = 83.8 bits (207), Expect = 7e-15, Method: Composition-based stats.
Identities = 26/119 (21%), Positives = 55/119 (46%), Gaps = 10/119 (8%)
Query: 12 ALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD-VSPDR 70
R E +R L+ ++ ++ +D + +I+I++ ++ DLR ATV+ ++ D +
Sbjct: 7 VRRHAERIR-ELVASVVRSQIKDPRLG--MITITDARITADLRDATVFYTVLGDAAAQAS 63
Query: 71 VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM-----CLPKIPV 124
+AL +R +G++L LR+ P L F D ++ L+ ++
Sbjct: 64 TAAALESAKGMLRSTVGKAL-GLRHSPTLTFVLDDVQDQVKHIDDLLAAARTADAEVQR 121
>gi|145593920|ref|YP_001158217.1| ribosome-binding factor A [Salinispora tropica CNB-440]
gi|189039557|sp|A4X4N9|RBFA_SALTO RecName: Full=Ribosome-binding factor A
gi|145303257|gb|ABP53839.1| ribosome-binding factor A [Salinispora tropica CNB-440]
Length = 156
Score = 83.8 bits (207), Expect = 7e-15, Method: Composition-based stats.
Identities = 27/109 (24%), Positives = 53/109 (48%), Gaps = 5/109 (4%)
Query: 12 ALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD-VSPDR 70
R E VR L+ ++ ++ +D + +I+I++ ++ DLR ATV+ ++ D +
Sbjct: 7 VRRHAERVR-ELVASVVRSQIKDPRLG--MITITDARITADLRDATVFYTVLGDASAQAS 63
Query: 71 VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+AL +R +G++L LR+ P L F D ++ L+
Sbjct: 64 TAAALESAKGMVRSTVGKAL-GLRHSPTLTFVLDDVQDQVKHIDDLLAQ 111
>gi|162447187|ref|YP_001620319.1| ribosome-binding factor A [Acholeplasma laidlawii PG-8A]
gi|161985294|gb|ABX80943.1| ribosome-binding factor A [Acholeplasma laidlawii PG-8A]
Length = 115
Score = 83.5 bits (206), Expect = 8e-15, Method: Composition-based stats.
Identities = 24/110 (21%), Positives = 53/110 (48%), Gaps = 5/110 (4%)
Query: 12 ALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD--VSPD 69
R+ + L+ I+N+ ++ I I+++E ++ D VY ++ D +
Sbjct: 5 VDRLASRIFRELVH-IVNDVIKNTQIGY--ITLTETKVTKDKSYCYVYYTIIDDSVEAKK 61
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+V L+ K IR ++ + ++R +P+L F+YD +L ++ L+
Sbjct: 62 KVQDLLDAGKKEIRMKLASKVNDIRKIPDLVFKYDEALAYGNHIDKLLSD 111
>gi|302865970|ref|YP_003834607.1| ribosome-binding factor A [Micromonospora aurantiaca ATCC 27029]
gi|302568829|gb|ADL45031.1| ribosome-binding factor A [Micromonospora aurantiaca ATCC 27029]
Length = 161
Score = 83.5 bits (206), Expect = 8e-15, Method: Composition-based stats.
Identities = 26/119 (21%), Positives = 55/119 (46%), Gaps = 10/119 (8%)
Query: 12 ALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD-VSPDR 70
R E +R L+ ++ ++ +D + +I+I++ ++ DLR ATV+ ++ D +
Sbjct: 7 VRRHAERIR-ELVASVVRSQIKDPRLG--MITITDARITADLRDATVFYTVLGDAAAQAS 63
Query: 71 VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM-----CLPKIPV 124
+AL +R +G++L LR+ P L F D ++ L+ ++
Sbjct: 64 TAAALESAKGMLRSTVGKAL-GLRHSPTLTFVLDDVQDQVKHIDDLLAAARTADAEVQR 121
>gi|255019832|ref|ZP_05291908.1| Ribosome-binding factor A [Acidithiobacillus caldus ATCC 51756]
gi|254970761|gb|EET28247.1| Ribosome-binding factor A [Acidithiobacillus caldus ATCC 51756]
Length = 127
Score = 83.5 bits (206), Expect = 9e-15, Method: Composition-based stats.
Identities = 32/125 (25%), Positives = 59/125 (47%), Gaps = 6/125 (4%)
Query: 5 NPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL 64
+ + RA RV +++ + ++ + + SI+EV ++ D+R A V+ +L
Sbjct: 4 SQRGFPRARRVAHLLQTEIAAILPQ--LHGLQVEGLLPSITEVELAPDMRWARVHFALMD 61
Query: 65 DVSPDRVISA-LNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIP 123
R+++A L+ IR +GR L LR +P L F YD ++ L+ +P
Sbjct: 62 GPGRARMVTAELDRQAGQIRQILGRRL-ALRRIPPLHFTYDARFDRDAEMARLLSS--LP 118
Query: 124 VALEK 128
A E+
Sbjct: 119 PAAEE 123
>gi|163857444|ref|YP_001631742.1| ribosome-binding factor A [Bordetella petrii DSM 12804]
gi|189039528|sp|A9ITX2|RBFA_BORPD RecName: Full=Ribosome-binding factor A
gi|163261172|emb|CAP43474.1| rbfA [Bordetella petrii]
Length = 136
Score = 83.5 bits (206), Expect = 9e-15, Method: Composition-based stats.
Identities = 27/109 (24%), Positives = 54/109 (49%), Gaps = 5/109 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
R LR+ ++++ L +I + +I++S V +S D A VY ++ L PD
Sbjct: 12 RNLRLADQIQKDLAGLIQREL---DMSRAGLITLSGVELSADYAHAKVYFTV-LGAEPDA 67
Query: 71 VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ LN ++ ++ + L ++ VP LRF +D + +++AL+
Sbjct: 68 AAALLNEKAGWLHSQLYK-LLHIHTVPTLRFVHDAQIARGIEMSALIDR 115
>gi|227833353|ref|YP_002835060.1| Ribosome-binding factor A [Corynebacterium aurimucosum ATCC 700975]
gi|262184339|ref|ZP_06043760.1| ribosome-binding factor A [Corynebacterium aurimucosum ATCC 700975]
gi|254789744|sp|C3PH18|RBFA_CORA7 RecName: Full=Ribosome-binding factor A
gi|227454369|gb|ACP33122.1| Ribosome-binding factor A [Corynebacterium aurimucosum ATCC 700975]
Length = 147
Score = 83.5 bits (206), Expect = 9e-15, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 56/122 (45%), Gaps = 10/122 (8%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-----LPLD 65
RA R+ + +++ + I +DR + +++I++ ++ DL ATV+ + + +
Sbjct: 6 RAARMAKRIQTIVASAIERQ-IKDRRLE--LVTITDARVTGDLHDATVFYTVRGTDIGTE 62
Query: 66 VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
D+ AL +R +G L ++R+ P L F DT ++ + L+ +
Sbjct: 63 PDYDQAAEALTRAKGQLRKIVGDEL-SVRFTPTLSFELDTVPEASAHMEELLARAR-ARD 120
Query: 126 LE 127
E
Sbjct: 121 AE 122
>gi|255325204|ref|ZP_05366310.1| ribosome-binding factor A [Corynebacterium tuberculostearicum
SK141]
gi|255297769|gb|EET77080.1| ribosome-binding factor A [Corynebacterium tuberculostearicum
SK141]
Length = 147
Score = 83.5 bits (206), Expect = 9e-15, Method: Composition-based stats.
Identities = 27/122 (22%), Positives = 57/122 (46%), Gaps = 10/122 (8%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDVSPD 69
RA R+ + ++ + I E +DR + +++I++ ++ DL ATV+ ++ D+ +
Sbjct: 6 RAARMAKRIKEIVASAIER-EIKDRRLE--LVTITDTRVTGDLHDATVFYTVRGKDIDSE 62
Query: 70 ----RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
+ AL +R +G L ++R+ P L F DT ++ + L+ +
Sbjct: 63 PDFAQAEEALKRAKGQLRKIVGDQL-SVRFTPTLTFEVDTVPEASAHMEELLARAR-ARD 120
Query: 126 LE 127
E
Sbjct: 121 EE 122
>gi|94971241|ref|YP_593289.1| ribosome-binding factor A [Candidatus Koribacter versatilis
Ellin345]
gi|172046721|sp|Q1IIT5|RBFA_ACIBL RecName: Full=Ribosome-binding factor A
gi|94553291|gb|ABF43215.1| ribosome-binding factor A [Candidatus Koribacter versatilis
Ellin345]
Length = 123
Score = 83.5 bits (206), Expect = 9e-15, Method: Composition-based stats.
Identities = 25/108 (23%), Positives = 50/108 (46%), Gaps = 5/108 (4%)
Query: 13 LRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPD-RV 71
R+GE +R + ++ E D I ++++SEV ++ + + A V +++ +
Sbjct: 11 ERLGEAIREEIGAIL-EGELGDPRIG--LVTVSEVMIASNGKSAIVLVAVAGEEQEAVDT 67
Query: 72 ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ L +IR + L LR PEL FR D + + ++ L+
Sbjct: 68 LEGLAAATGYIRHEVAARL-GLRVAPELLFRLDQTERYGGRVEELLKR 114
>gi|127513754|ref|YP_001094951.1| ribosome-binding factor A [Shewanella loihica PV-4]
gi|166219404|sp|A3QGU4|RBFA_SHELP RecName: Full=Ribosome-binding factor A
gi|126639049|gb|ABO24692.1| ribosome-binding factor A [Shewanella loihica PV-4]
Length = 140
Score = 83.5 bits (206), Expect = 1e-14, Method: Composition-based stats.
Identities = 23/92 (25%), Positives = 49/92 (53%), Gaps = 5/92 (5%)
Query: 30 NEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP--DRVISALNCNIKFIRGRIG 87
+ +D I ++++++V +S DL A VY++ + + ++AL ++R +
Sbjct: 25 RDIKDPRIG--MVTVNDVDVSRDLNYAKVYVTFFEEDKAVVEEKLAALEAAAGYVRSLVA 82
Query: 88 RSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
++ LR +PE+RF YD SL +++ L+
Sbjct: 83 GRMK-LRVMPEIRFIYDASLIEGMRMSNLVSQ 113
>gi|257791557|ref|YP_003182163.1| ribosome-binding factor A [Eggerthella lenta DSM 2243]
gi|317490690|ref|ZP_07949156.1| ribosome-binding factor A [Eggerthella sp. 1_3_56FAA]
gi|325833218|ref|ZP_08165724.1| ribosome-binding factor A [Eggerthella sp. HGA1]
gi|257475454|gb|ACV55774.1| ribosome-binding factor A [Eggerthella lenta DSM 2243]
gi|316910221|gb|EFV31864.1| ribosome-binding factor A [Eggerthella sp. 1_3_56FAA]
gi|325485600|gb|EGC88068.1| ribosome-binding factor A [Eggerthella sp. HGA1]
Length = 145
Score = 83.5 bits (206), Expect = 1e-14, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 49/117 (41%), Gaps = 5/117 (4%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
K S +V E+ R + ++L E D + +++I+ +S D V V+ + D
Sbjct: 2 KQSSSNRKVNEQAREVIAGILLF-EISDPRLE--LVTITGCEVSYDRSVCNVFYTTEPD- 57
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIP 123
+ V +A IR + R L R PELRF D S+ ++ + +
Sbjct: 58 RYEDVAAAFQKASGRIRSLMARKLSW-RIAPELRFLLDKSVDEAERIASALERDAAR 113
>gi|227503411|ref|ZP_03933460.1| ribosome-binding factor A [Corynebacterium accolens ATCC 49725]
gi|306836346|ref|ZP_07469325.1| ribosome-binding factor A [Corynebacterium accolens ATCC 49726]
gi|227075914|gb|EEI13877.1| ribosome-binding factor A [Corynebacterium accolens ATCC 49725]
gi|304567781|gb|EFM43367.1| ribosome-binding factor A [Corynebacterium accolens ATCC 49726]
Length = 147
Score = 83.5 bits (206), Expect = 1e-14, Method: Composition-based stats.
Identities = 25/122 (20%), Positives = 56/122 (45%), Gaps = 10/122 (8%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-----D 65
RA R+ + ++ + I + +DR + ++++++ ++ DL ATV+ ++ +
Sbjct: 6 RAARLAKRIQEIVASAI-ELQIKDRRLE--MVTVTDARVTGDLHDATVFYTVRGHDIEAE 62
Query: 66 VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
D+ AL +R +G L ++R+ P L F DT ++ + L+ +
Sbjct: 63 PDYDQAEEALKRAKGQLRKIVGDQL-SVRFTPTLTFELDTVPEASAHMEELLARAR-ARD 120
Query: 126 LE 127
E
Sbjct: 121 EE 122
>gi|298207243|ref|YP_003715422.1| ribosome-binding factor A [Croceibacter atlanticus HTCC2559]
gi|83849879|gb|EAP87747.1| ribosome-binding factor A [Croceibacter atlanticus HTCC2559]
Length = 132
Score = 83.1 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 53/120 (44%), Gaps = 2/120 (1%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
+ R ++ ++ L V+ + ++ +IS+++ ++ DL A Y+S+
Sbjct: 1 METNRQKKIAGVLQRDLADVL-QSALREAGTQGIIISVTQAKVTTDLSQAKAYLSIFPSD 59
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRN-LRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
+ VI+ +N I+ +I +N LR +P L F D SL + + + P+
Sbjct: 60 KAETVIAEINKLKYQIKHQIALKTKNQLRRMPNLEFFNDDSLDYIAGIEDAVKGKENPIE 119
>gi|149196218|ref|ZP_01873273.1| ribosome-binding factor A [Lentisphaera araneosa HTCC2155]
gi|149140479|gb|EDM28877.1| ribosome-binding factor A [Lentisphaera araneosa HTCC2155]
Length = 119
Score = 83.1 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 25/118 (21%), Positives = 52/118 (44%), Gaps = 5/118 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
R V ++ L V + F +I+++ V S DLR VY+S + + +
Sbjct: 5 RMRSVDSTIQKELSSVFIREVFP---CFECLITVTGVKTSADLRHCNVYVSVMGSNQQKE 61
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALE 127
VI L + + + +R +++ P + + D + ++ +L++L+ IP E
Sbjct: 62 DVIRFLRDRSEEFFNHLSKRIR-MKFTPVIHWHCDDTPETADRLSSLIDSIDIPSEDE 118
>gi|325110094|ref|YP_004271162.1| ribosome-binding factor A [Planctomyces brasiliensis DSM 5305]
gi|324970362|gb|ADY61140.1| Ribosome-binding factor A [Planctomyces brasiliensis DSM 5305]
Length = 150
Score = 83.1 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 27/114 (23%), Positives = 52/114 (45%), Gaps = 5/114 (4%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
+SRR + +R + IL E D + +++ +V ++ D+R A VY+S+ +
Sbjct: 1 MSSRRTAKASRAIREVVSKAILF-EMNDPRVKD--VTVLDVEVAPDMRSAKVYVSIMGNP 57
Query: 67 SPDR-VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ LN F++ RI + RY P L F D S++ + + ++
Sbjct: 58 KAQDLTLHGLNSARGFLQRRIADEIDT-RYTPILTFVNDDSVKKSIQASQILQQ 110
>gi|332664349|ref|YP_004447137.1| ribosome-binding factor A [Haliscomenobacter hydrossis DSM 1100]
gi|332333163|gb|AEE50264.1| Ribosome-binding factor A [Haliscomenobacter hydrossis DSM 1100]
Length = 125
Score = 83.1 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 22/112 (19%), Positives = 54/112 (48%), Gaps = 2/112 (1%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
+ + +V E V+ V+ +E + + +++++ V ++ DL +A +Y+S+
Sbjct: 1 METIKQKQVAELVKRNFSMVL-QDEGTNIYGATPLVTVTNVKVTPDLSLAKIYLSIYNTE 59
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNL-RYVPELRFRYDTSLQSYWKLNALM 117
V+ + ++ +G LR L R +P++ F D +L ++++ L
Sbjct: 60 HKQEVLLEMAEEKNRLKQALGYRLRKLVRRIPDVDFYLDDTLDEMFRIDELF 111
>gi|294055325|ref|YP_003548983.1| ribosome-binding factor A [Coraliomargarita akajimensis DSM 45221]
gi|293614658|gb|ADE54813.1| ribosome-binding factor A [Coraliomargarita akajimensis DSM 45221]
Length = 118
Score = 83.1 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 28/106 (26%), Positives = 44/106 (41%), Gaps = 6/106 (5%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
S+R RV E ++ L + I+ISEV S DLR AT+Y S+
Sbjct: 2 SKRISRVNELLQRELSEQLRQRY----RSQAVKITISEVQTSPDLRNATIYYSVLGGEED 57
Query: 69 -DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKL 113
K +R ++ + + L+Y P F YD S++ +
Sbjct: 58 IRDARKLFRKAGKDLRRQVSQHV-ILKYFPAFEFVYDPSMERGSHI 102
>gi|78187632|ref|YP_375675.1| ribosome-binding factor A [Chlorobium luteolum DSM 273]
gi|123582638|sp|Q3B1Z9|RBFA_PELLD RecName: Full=Ribosome-binding factor A
gi|78167534|gb|ABB24632.1| ribosome-binding factor A [Chlorobium luteolum DSM 273]
Length = 119
Score = 83.1 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 24/119 (20%), Positives = 51/119 (42%), Gaps = 8/119 (6%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVS 67
SRR +V ++ L ++ E + ++++ +V ++ DL +A Y+S + +
Sbjct: 2 SRRTEKVASLLQQELGAIL---EKEYPR-GGPLLTVVDVKVTADLGLARAYVSIIGSEEQ 57
Query: 68 PDRVISALNCNIKFIRGRIGRSLRN-LRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
+ L K IR + +R+ R +PEL F D + ++ L+ +
Sbjct: 58 RTAAMEFLRDETKNIRHILSTRIRHQFRRIPELEFFEDRLFEQANRIEELLRS--VRKD 114
>gi|226306121|ref|YP_002766081.1| ribosome-binding factor A [Rhodococcus erythropolis PR4]
gi|229490912|ref|ZP_04384747.1| ribosome-binding factor A [Rhodococcus erythropolis SK121]
gi|259552062|sp|C0ZYA7|RBFA_RHOE4 RecName: Full=Ribosome-binding factor A
gi|226185238|dbj|BAH33342.1| ribosome-binding factor A [Rhodococcus erythropolis PR4]
gi|229322302|gb|EEN88088.1| ribosome-binding factor A [Rhodococcus erythropolis SK121]
Length = 159
Score = 83.1 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 23/120 (19%), Positives = 54/120 (45%), Gaps = 9/120 (7%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV---- 66
RA ++ + + + + I ++E +D ++ ++I++ ++ DL ATVY ++ +
Sbjct: 6 RARKLAKRIGTIVATAI-DHEIKDPRLA--FVTITDTKVTNDLHDATVYYTVMGEKVDSA 62
Query: 67 -SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
+ + L +R ++G + +R+ P L F DT + + L+ K
Sbjct: 63 PDVEAAAAGLEKAKGVLRSKVG-AGTGVRFTPTLTFVADTVPDTARHMEELLARAKAADD 121
>gi|312194986|ref|YP_004015047.1| ribosome-binding factor A [Frankia sp. EuI1c]
gi|311226322|gb|ADP79177.1| ribosome-binding factor A [Frankia sp. EuI1c]
Length = 182
Score = 83.1 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 21/107 (19%), Positives = 46/107 (42%), Gaps = 5/107 (4%)
Query: 22 ALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS-PDRVISALNCNIK 80
++ L +D + +++I++ ++ DL ATV+ ++ D AL
Sbjct: 16 EVVAAALERGVKDPRLG--MVTITDARVTPDLMEATVFYTVYGDDEARADSARALESAKG 73
Query: 81 FIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALE 127
+R ++G++ ++ P L F +D LN L+ + + E
Sbjct: 74 LLRSQVGKA-TGVKSTPTLTFVHDRLPDDAQHLNDLLAVAR-ARDAE 118
>gi|218960606|ref|YP_001740381.1| putative ribosome-binding factor A (rbfA-like) [Candidatus
Cloacamonas acidaminovorans]
gi|167729263|emb|CAO80174.1| putative ribosome-binding factor A (rbfA-like) [Candidatus
Cloacamonas acidaminovorans]
Length = 161
Score = 82.7 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 28/110 (25%), Positives = 56/110 (50%), Gaps = 5/110 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD-VSPD 69
R R+ E++ L + L+ + D ++ + I++V +S DL A +Y S + S D
Sbjct: 5 RIPRLQAELKK-LFNIALSQKLNDPKLA--WVQITDVVISKDLHYAKLYFSHYNNPASHD 61
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
++ L + F++ +I + + +R +PEL F YD + K++ L+
Sbjct: 62 QIRELLIKSSGFLKKQIAGA-QIMRTIPELSFYYDDTEDRAAKVDTLLAS 110
>gi|51599054|ref|YP_073242.1| ribosome-binding factor A [Borrelia garinii PBi]
gi|61214866|sp|Q65ZX1|RBFA_BORGA RecName: Full=Ribosome-binding factor A
gi|51573625|gb|AAU07650.1| ribosome-binding factor A [Borrelia garinii PBi]
Length = 120
Score = 82.7 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 26/100 (26%), Positives = 51/100 (51%), Gaps = 3/100 (3%)
Query: 19 VRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI-SLPLDVSPDRVISALNC 77
+ + +I++ +D I +++ +V S DL A V++ S+ S D + ALN
Sbjct: 14 IAQEIGNLIVSRGIKDPRIHS-FLTVVKVEFSKDLINAKVFMGSIKEGASLDNAVKALNN 72
Query: 78 NIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
FI+ +I + ++ +R P+L F D SL + +N ++
Sbjct: 73 AKGFIQSQIIKRIK-VRSTPKLLFVKDDSLSKSFYVNKII 111
>gi|110597605|ref|ZP_01385890.1| ribosome-binding factor A [Chlorobium ferrooxidans DSM 13031]
gi|110340725|gb|EAT59202.1| ribosome-binding factor A [Chlorobium ferrooxidans DSM 13031]
Length = 121
Score = 82.7 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 23/113 (20%), Positives = 49/113 (43%), Gaps = 6/113 (5%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
S R +V ++ L ++ + +I++ +V ++ DL +A +Y+S+
Sbjct: 2 SIRTEKVASLLQQELGAIMQKEL---PR-NGPIITVVDVKVTADLGIARIYVSIIGTSKE 57
Query: 69 D-RVISALNCNIKFIRGRIGRSLR-NLRYVPELRFRYDTSLQSYWKLNALMCL 119
++ L K IR + +R + R +PEL F D + ++ L+
Sbjct: 58 QVEAMAYLREETKSIRKILSARIRHHFRRIPELEFHEDHLYERATRIEELLSS 110
>gi|94263055|ref|ZP_01286874.1| Ribosome-binding factor A [delta proteobacterium MLMS-1]
gi|94268658|ref|ZP_01291247.1| Ribosome-binding factor A [delta proteobacterium MLMS-1]
gi|93451513|gb|EAT02336.1| Ribosome-binding factor A [delta proteobacterium MLMS-1]
gi|93456598|gb|EAT06706.1| Ribosome-binding factor A [delta proteobacterium MLMS-1]
Length = 131
Score = 82.7 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 29/104 (27%), Positives = 51/104 (49%), Gaps = 4/104 (3%)
Query: 15 VGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISA 74
V +E+R + ++L + +D + + ++I + ++ DLR A +Y S+ D + +
Sbjct: 29 VADEIRQEVATLLL-AKVKDPRVEQ--VTILKATVTADLRQARIYYSVLHDEAAADAAAG 85
Query: 75 LNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
L FIR + ++L LR VP L F D SL L L+
Sbjct: 86 LESARSFIRRSLAKNL-VLRVVPALIFERDRSLADQQHLEQLLA 128
>gi|311739676|ref|ZP_07713511.1| ribosome-binding factor A [Corynebacterium pseudogenitalium ATCC
33035]
gi|311305492|gb|EFQ81560.1| ribosome-binding factor A [Corynebacterium pseudogenitalium ATCC
33035]
Length = 147
Score = 82.7 bits (204), Expect = 2e-14, Method: Composition-based stats.
Identities = 27/122 (22%), Positives = 57/122 (46%), Gaps = 10/122 (8%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-PLDVSPD 69
RA R+ + ++ + I E +DR + +++I++ ++ DL ATV+ ++ D+ +
Sbjct: 6 RAARMAKRIKEIVASAIER-EIKDRRLE--LVTITDTRVTGDLHDATVFYTVRGKDIDSE 62
Query: 70 ----RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
+ AL +R +G L ++R+ P L F DT ++ + L+ +
Sbjct: 63 PDFAQAEEALKRAKGQLRKIVGDQL-SVRFTPTLTFEVDTVPEASAHMEELLARAR-ARD 120
Query: 126 LE 127
E
Sbjct: 121 EE 122
>gi|33596484|ref|NP_884127.1| ribosome-binding factor A [Bordetella parapertussis 12822]
gi|39931839|sp|Q7W9A4|RBFA_BORPA RecName: Full=Ribosome-binding factor A
gi|33566253|emb|CAE37164.1| ribosome-binding factor A [Bordetella parapertussis]
Length = 133
Score = 82.7 bits (204), Expect = 2e-14, Method: Composition-based stats.
Identities = 26/109 (23%), Positives = 53/109 (48%), Gaps = 5/109 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
R LR+ ++++ L +I + +I++S V +S D A VY ++ L PD
Sbjct: 12 RNLRLADQIQKDLAGIIQREI---DMTRAGLITLSGVELSADYAHAKVYFTV-LGAEPDT 67
Query: 71 VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ LN ++ ++ + L ++ VP LRF +D + +++ L+
Sbjct: 68 AAALLNEKAGWLHSQLYK-LLHIHTVPTLRFVHDLQITRGIEMSVLIDR 115
>gi|317125348|ref|YP_004099460.1| ribosome-binding factor A [Intrasporangium calvum DSM 43043]
gi|315589436|gb|ADU48733.1| ribosome-binding factor A [Intrasporangium calvum DSM 43043]
Length = 152
Score = 82.7 bits (204), Expect = 2e-14, Method: Composition-based stats.
Identities = 22/118 (18%), Positives = 50/118 (42%), Gaps = 6/118 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-DVSPD 69
RA ++ + ++ + + +D + ++I++ ++ DL+ A+V+ ++ D
Sbjct: 6 RARKIADRIKVIVAEYLEFR-IKDDRLG--FVTITDARVTGDLQHASVFYTVFGSDEERQ 62
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALE 127
+ L N IR +G+ + +R P L F D + L L+ + E
Sbjct: 63 ATAAVLEANKGRIRSAVGKQI-GIRLTPSLEFIADALPEGAAHLEDLVAQTR-ARDEE 118
>gi|150009888|ref|YP_001304631.1| ribosome-binding factor A [Parabacteroides distasonis ATCC 8503]
gi|255012869|ref|ZP_05284995.1| ribosome-binding factor A [Bacteroides sp. 2_1_7]
gi|256838403|ref|ZP_05543913.1| ribosome-binding factor A [Parabacteroides sp. D13]
gi|262382836|ref|ZP_06075973.1| ribosome-binding factor A [Bacteroides sp. 2_1_33B]
gi|298374242|ref|ZP_06984200.1| ribosome-binding factor A [Bacteroides sp. 3_1_19]
gi|301312380|ref|ZP_07218296.1| ribosome-binding factor A [Bacteroides sp. 20_3]
gi|149938312|gb|ABR45009.1| ribosome-binding factor A [Parabacteroides distasonis ATCC 8503]
gi|256739322|gb|EEU52646.1| ribosome-binding factor A [Parabacteroides sp. D13]
gi|262295714|gb|EEY83645.1| ribosome-binding factor A [Bacteroides sp. 2_1_33B]
gi|298268610|gb|EFI10265.1| ribosome-binding factor A [Bacteroides sp. 3_1_19]
gi|300829563|gb|EFK60217.1| ribosome-binding factor A [Bacteroides sp. 20_3]
Length = 111
Score = 82.7 bits (204), Expect = 2e-14, Method: Composition-based stats.
Identities = 30/113 (26%), Positives = 54/113 (47%), Gaps = 4/113 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
S R ++ ++ L + Q + + ++S+S V +S DL VA Y+S+
Sbjct: 1 MESTRLQKIERLLQKELSDIFQK---QTQGMHGVLVSVSVVRVSPDLSVARAYLSIFPSD 57
Query: 67 SPDRVISALNCNIKFIRGRIGRSLR-NLRYVPELRFRYDTSLQSYWKLNALMC 118
++ A+ N K IR +G+ +R +R +PEL F D SL ++ L+
Sbjct: 58 KSQELLEAIRSNTKAIRFDLGQRIRLQVRKIPELSFFIDDSLDYIENIDNLLH 110
>gi|224534165|ref|ZP_03674745.1| ribosome-binding factor A [Borrelia spielmanii A14S]
gi|224514590|gb|EEF84904.1| ribosome-binding factor A [Borrelia spielmanii A14S]
Length = 120
Score = 82.7 bits (204), Expect = 2e-14, Method: Composition-based stats.
Identities = 26/100 (26%), Positives = 51/100 (51%), Gaps = 3/100 (3%)
Query: 19 VRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI-SLPLDVSPDRVISALNC 77
+ + +I++ +D I +++ +V S DL A V++ S+ S D + ALN
Sbjct: 14 IAQEIGNLIVSRGIKDPRIHS-FLTVVKVEFSKDLVNAKVFMGSIKEGASLDNAVKALNN 72
Query: 78 NIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
FI+ +I + ++ +R P+L F D SL + +N ++
Sbjct: 73 AKGFIQSQIIKRIK-VRSTPKLLFVKDDSLSKSFYVNKII 111
>gi|219684940|ref|ZP_03539881.1| ribosome-binding factor A [Borrelia garinii PBr]
gi|219671678|gb|EED28734.1| ribosome-binding factor A [Borrelia garinii PBr]
Length = 120
Score = 82.7 bits (204), Expect = 2e-14, Method: Composition-based stats.
Identities = 26/100 (26%), Positives = 51/100 (51%), Gaps = 3/100 (3%)
Query: 19 VRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI-SLPLDVSPDRVISALNC 77
+ + +I++ +D I +++ +V S DL A V++ S+ S D + ALN
Sbjct: 14 IAQEIGNLIVSRGIKDPRIHS-FLTVVKVEFSKDLINAKVFMGSIKEGASLDNAVKALNN 72
Query: 78 NIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
FI+ +I + ++ +R P+L F D SL + +N ++
Sbjct: 73 AKGFIQSQIIKRIK-VRSTPKLLFVKDDSLSKSFYVNKII 111
>gi|283782405|ref|YP_003373160.1| ribosome-binding factor A [Pirellula staleyi DSM 6068]
gi|283440858|gb|ADB19300.1| ribosome-binding factor A [Pirellula staleyi DSM 6068]
Length = 165
Score = 82.7 bits (204), Expect = 2e-14, Method: Composition-based stats.
Identities = 27/112 (24%), Positives = 56/112 (50%), Gaps = 5/112 (4%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
SRR L+ E +R + IL E +D + +++ +V M+ D+R A + +S+ D
Sbjct: 1 MTSRRILKAQEAIREVVSMAIL-TEIRDPRVRD--VTVVKVEMTPDMRAAKIMVSVMGDE 57
Query: 67 SPDR-VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
++ + L + F++ RI + RY P+L F D +++ ++ ++
Sbjct: 58 QREKLTVLGLQNSAGFLQKRIADEIDT-RYTPKLTFEIDRGVKNSLEVLRIL 108
>gi|227875840|ref|ZP_03993966.1| ribosome-binding factor A [Mobiluncus mulieris ATCC 35243]
gi|269977476|ref|ZP_06184448.1| ribosome-binding factor A [Mobiluncus mulieris 28-1]
gi|306819121|ref|ZP_07452835.1| ribosome-binding factor A [Mobiluncus mulieris ATCC 35239]
gi|307700040|ref|ZP_07637089.1| ribosome-binding factor A [Mobiluncus mulieris FB024-16]
gi|227843588|gb|EEJ53771.1| ribosome-binding factor A [Mobiluncus mulieris ATCC 35243]
gi|269934392|gb|EEZ90954.1| ribosome-binding factor A [Mobiluncus mulieris 28-1]
gi|304648097|gb|EFM45408.1| ribosome-binding factor A [Mobiluncus mulieris ATCC 35239]
gi|307614801|gb|EFN94021.1| ribosome-binding factor A [Mobiluncus mulieris FB024-16]
Length = 143
Score = 82.7 bits (204), Expect = 2e-14, Method: Composition-based stats.
Identities = 23/95 (24%), Positives = 45/95 (47%), Gaps = 4/95 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
R +V + + + ++ N +D + ++++ V ++ DL+ A VY + D + +
Sbjct: 5 RREKVAANIMTTVASMLNNGSIKDPRLG--FVTVTSVEVTGDLQHAKVYYTAYGNDSAQN 62
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYD 104
+AL IR R+G++L R P L F D
Sbjct: 63 ASAAALASAKGVIRSRVGKNLGT-RLTPTLEFCPD 96
>gi|154509093|ref|ZP_02044735.1| hypothetical protein ACTODO_01610 [Actinomyces odontolyticus ATCC
17982]
gi|293192217|ref|ZP_06609386.1| ribosome-binding factor A [Actinomyces odontolyticus F0309]
gi|153798727|gb|EDN81147.1| hypothetical protein ACTODO_01610 [Actinomyces odontolyticus ATCC
17982]
gi|292820333|gb|EFF79326.1| ribosome-binding factor A [Actinomyces odontolyticus F0309]
Length = 150
Score = 82.3 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 25/112 (22%), Positives = 52/112 (46%), Gaps = 5/112 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP-D 69
R +V E + + +I + +D + +++I++V ++ DL+ A+++ ++ D +
Sbjct: 6 RVRKVQERILQTVASMIGRH-VKDPRLE--LVTITDVRVTGDLQHASIFYTVLGDDEQRE 62
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+ A R R+G++L LR P L F D +S L + K
Sbjct: 63 KAARAFASAQGLFRSRVGKAL-GLRLTPTLEFILDALPESAAALEDALAKAK 113
>gi|58617207|ref|YP_196406.1| putative ribosome-binding factor A [Ehrlichia ruminantium str.
Gardel]
gi|58416819|emb|CAI27932.1| Putative Ribosome-binding factor A [Ehrlichia ruminantium str.
Gardel]
Length = 115
Score = 82.3 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 30/114 (26%), Positives = 60/114 (52%), Gaps = 5/114 (4%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
S R L+V + A+ V++++ + I ++++S+V +S D++ ATV++ + D
Sbjct: 5 SESFRNLKVASVLSRAISRVLIHDIYS---IGCSIVNVSKVEVSKDVKNATVFVVISDDH 61
Query: 67 -SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ ++ LN IR I + +LRYVP+L F+ D + ++N L+
Sbjct: 62 PDKEDLVKELNDVSFLIRKAIFSYV-DLRYVPKLYFKIDYHFDNLVRVNQLLES 114
>gi|57239196|ref|YP_180332.1| putative ribosome-binding factor A [Ehrlichia ruminantium str.
Welgevonden]
gi|58579154|ref|YP_197366.1| putative ribosome-binding factor A [Ehrlichia ruminantium str.
Welgevonden]
gi|15811168|gb|AAL08841.1|AF308672_2 hypothetical ribosome-binding factor A [Ehrlichia ruminantium]
gi|57161275|emb|CAH58196.1| putative ribosome-binding factor A [Ehrlichia ruminantium str.
Welgevonden]
gi|58417780|emb|CAI26984.1| Putative Ribosome-binding factor A [Ehrlichia ruminantium str.
Welgevonden]
Length = 115
Score = 82.3 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 30/114 (26%), Positives = 60/114 (52%), Gaps = 5/114 (4%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
S R L+V + A+ V++++ + I ++++S+V +S D++ ATV++ + D
Sbjct: 5 SESFRNLKVASVLSRAISRVLIHDIYS---IGCSIVNVSKVEVSKDVKNATVFVVISDDH 61
Query: 67 -SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ ++ LN IR I + +LRYVP+L F+ D + ++N L+
Sbjct: 62 PDKENLVKELNDVSFLIRKAIFSYV-DLRYVPKLYFKIDYHFDNLVRVNQLLES 114
>gi|269215363|ref|ZP_06159217.1| ribosome-binding factor A [Slackia exigua ATCC 700122]
gi|269131219|gb|EEZ62293.1| ribosome-binding factor A [Slackia exigua ATCC 700122]
Length = 158
Score = 82.3 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 24/112 (21%), Positives = 45/112 (40%), Gaps = 5/112 (4%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
K S + E+ R L ++L E D + +++I+ +S D V+ +
Sbjct: 2 KQSNANRKTNEQAREILANILLF-EVSDPRL--RLVTITGCEVSYDRSYCNVFYTSDPG- 57
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ + + + IR +G L R PELRF D S+ ++ +
Sbjct: 58 TYEEAAAGFSAARGRIRSLMGARLTW-RVTPELRFLLDPSVDEAERIARALA 108
>gi|213964678|ref|ZP_03392878.1| ribosome-binding factor A [Corynebacterium amycolatum SK46]
gi|213952871|gb|EEB64253.1| ribosome-binding factor A [Corynebacterium amycolatum SK46]
Length = 143
Score = 81.9 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 53/122 (43%), Gaps = 10/122 (8%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-----D 65
RA R+ + ++ + I E +DR + ++I++ ++ DL ATV+ ++ +
Sbjct: 6 RARRLSKRIQEIVASAIER-EIKDRRLE--FVTITDCRVTGDLHDATVFYTVRGRTLDEE 62
Query: 66 VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
+ +AL +R +GR +RY P L F DT + L L+ +
Sbjct: 63 PDYESAAAALEKAKGQLRSLVGRG-TGVRYTPTLAFEVDTVPEISAHLEELLDKTR-ARD 120
Query: 126 LE 127
E
Sbjct: 121 AE 122
>gi|312139331|ref|YP_004006667.1| ribosome binding factor a rbfa [Rhodococcus equi 103S]
gi|325672790|ref|ZP_08152486.1| ribosome-binding factor A [Rhodococcus equi ATCC 33707]
gi|311888670|emb|CBH47982.1| ribosome binding factor A RbfA [Rhodococcus equi 103S]
gi|325556667|gb|EGD26333.1| ribosome-binding factor A [Rhodococcus equi ATCC 33707]
Length = 154
Score = 81.9 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 23/112 (20%), Positives = 52/112 (46%), Gaps = 9/112 (8%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
RA R+ + + + + I ++E +D ++ ++I++ ++ DL ATVY ++ +
Sbjct: 6 RARRLAKRISTIVATAI-DHEIKDPRLA--FVTITDAKVTADLHDATVYYTVMGENIDTE 62
Query: 71 -----VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ L +R ++G + +R+ P L F DT + + L+
Sbjct: 63 PDLAGAAAGLEKAKGVLRSKVG-AGTGVRFTPTLTFVADTVPDTARHMEELL 113
>gi|212550652|ref|YP_002308969.1| ribosome-binding factor A [Candidatus Azobacteroides
pseudotrichonymphae genomovar. CFP2]
gi|212548890|dbj|BAG83558.1| ribosome-binding factor A [Candidatus Azobacteroides
pseudotrichonymphae genomovar. CFP2]
Length = 116
Score = 81.9 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 24/112 (21%), Positives = 53/112 (47%), Gaps = 3/112 (2%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
R+ ++ V+ + + Q R + +IS++ V +S DL VA +++S+
Sbjct: 1 MGKRKLQKIERLVQKEINELFRLQTQQMRQL--TIISVTTVRISSDLSVAKIFLSIYPSD 58
Query: 67 SPDRVISALNCNIKFIRGRIGRSL-RNLRYVPELRFRYDTSLQSYWKLNALM 117
++ ++ IR +G + + +R++P+L F D S + +N L+
Sbjct: 59 KIGKITQSIEQGKSAIRYNLGLRIGKQIRHIPKLAFFVDNSFEYVENINHLL 110
>gi|308176802|ref|YP_003916208.1| ribosome-binding factor A [Arthrobacter arilaitensis Re117]
gi|307744265|emb|CBT75237.1| ribosome-binding factor A [Arthrobacter arilaitensis Re117]
Length = 144
Score = 81.9 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 52/112 (46%), Gaps = 5/112 (4%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS 67
+S RA R+ + V+ LM L +D I +++++ ++ DL+ ATVY ++ D
Sbjct: 3 DSARAARLAKRVQ-VLMAQSLRTVIKDERIDN--VTVTDARVTNDLQHATVYYTVFGDDE 59
Query: 68 -PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ + L +R +GR+L +R P L F D + L L+
Sbjct: 60 MKKDIATMLEKRGGALRKELGRNL-TIRLTPTLAFVADEIPEGASHLEELLA 110
>gi|302335786|ref|YP_003800993.1| ribosome-binding factor A [Olsenella uli DSM 7084]
gi|301319626|gb|ADK68113.1| ribosome-binding factor A [Olsenella uli DSM 7084]
Length = 133
Score = 81.9 bits (202), Expect = 3e-14, Method: Composition-based stats.
Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 10/123 (8%)
Query: 4 KNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP 63
K +NSRR ++ R L ++L E D ++ +++++ V +SVD V Y+S
Sbjct: 2 KQNRNSRRNNQIA---REKLASILLF-EVADPDLA--LVTLTGVEVSVDKSVLKAYVSCE 55
Query: 64 LDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIP 123
D D V AL IR +G +L R PEL F DT+ +++ + L +P
Sbjct: 56 RD-RYDSVADALERARGRIRALLGHALGW-RVTPELIFEIDTTADEAERIS--IALENVP 111
Query: 124 VAL 126
L
Sbjct: 112 PTL 114
>gi|330466364|ref|YP_004404107.1| ribosome-binding factor A [Verrucosispora maris AB-18-032]
gi|328809335|gb|AEB43507.1| ribosome-binding factor A [Verrucosispora maris AB-18-032]
Length = 167
Score = 81.9 bits (202), Expect = 3e-14, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 56/119 (47%), Gaps = 10/119 (8%)
Query: 12 ALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD-VSPDR 70
R E VR L+ ++ ++ +D + +I+I++ ++ DLR ATV+ ++ D +
Sbjct: 7 VRRHAERVR-ELVASVVRSQIKDPRLG--MITITDARITADLRDATVFYTVLGDAAAQAG 63
Query: 71 VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM-----CLPKIPV 124
+AL+ +R +G++L LR+ P L F D ++ L+ ++
Sbjct: 64 TAAALDSAKGMLRSTVGKAL-GLRHSPTLTFVLDDVQDQVKHIDDLLAAARNADAEVQR 121
>gi|203284698|ref|YP_002222438.1| ribosome-binding factor A [Borrelia duttonii Ly]
gi|203288230|ref|YP_002223245.1| ribosome-binding factor A [Borrelia recurrentis A1]
gi|201084141|gb|ACH93732.1| ribosome-binding factor A [Borrelia duttonii Ly]
gi|201085450|gb|ACH95024.1| ribosome-binding factor A [Borrelia recurrentis A1]
Length = 129
Score = 81.9 bits (202), Expect = 3e-14, Method: Composition-based stats.
Identities = 23/110 (20%), Positives = 53/110 (48%), Gaps = 3/110 (2%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI-SLPLDVSPD 69
R ++ + + +I+ +D + +++ V ++ DL V++ S+ VS D
Sbjct: 16 RKSKLESLLVQEIGNLIVTRSIKDPRVHE-FLTVVRVEIANDLINTKVFVGSIKEGVSLD 74
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
I ALN FI+ ++ + ++ +R P+L F D ++ + +N ++
Sbjct: 75 NAIKALNNAKGFIQRKLVKRIK-VRNTPKLNFIRDDTISKAFYVNKIIEN 123
>gi|254444722|ref|ZP_05058198.1| ribosome-binding factor A [Verrucomicrobiae bacterium DG1235]
gi|198259030|gb|EDY83338.1| ribosome-binding factor A [Verrucomicrobiae bacterium DG1235]
Length = 130
Score = 81.9 bits (202), Expect = 3e-14, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 53/117 (45%), Gaps = 7/117 (5%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL--PLDV 66
S R +RVGE VR + ++ + +I+I+ V +S D + A ++ S+ +
Sbjct: 2 SNRKIRVGELVRREISDILHTRFKS----AAVLITITGVDVSPDNQNALIFYSVIETKEY 57
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIP 123
N R +G+ + L+Y+P L F +D ++ ++N L+ IP
Sbjct: 58 KRRDAQRFFEKNKSMFRRELGKRI-ILKYLPALTFAFDEKNEAATRVNELIDELDIP 113
>gi|28493126|ref|NP_787287.1| ribosome-binding factor A [Tropheryma whipplei str. Twist]
gi|28572759|ref|NP_789539.1| ribosome-binding factor A [Tropheryma whipplei TW08/27]
gi|39931917|sp|Q83N20|RBFA_TROWT RecName: Full=Ribosome-binding factor A
gi|39931918|sp|Q83ND3|RBFA_TROW8 RecName: Full=Ribosome-binding factor A
gi|28410892|emb|CAD67277.1| ribosome-binding factor A [Tropheryma whipplei TW08/27]
gi|28476166|gb|AAO44256.1| ribosome-binding factor A [Tropheryma whipplei str. Twist]
Length = 196
Score = 81.5 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 56/122 (45%), Gaps = 7/122 (5%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
+K K+ RA R+ +R + I + +D+L +++I+EV ++ DL A V++
Sbjct: 4 VKEFAMKDQIRAHRMAGRIRHLISRQI-ETKLRDQL---GLVTITEVQVTGDLHHAKVFV 59
Query: 61 SLPLDVSPDRV-ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
++ + + L N R +G + +R+VP + F D + ++ L+
Sbjct: 60 TVYGTKDEAQTALKILEDNRANFRRSLG--VLKVRFVPTVEFELDRLFEDAGIMDELIQR 117
Query: 120 PK 121
+
Sbjct: 118 AR 119
>gi|145220363|ref|YP_001131072.1| ribosome-binding factor A [Prosthecochloris vibrioformis DSM 265]
gi|189039551|sp|A4SGG1|RBFA_PROVI RecName: Full=Ribosome-binding factor A
gi|145206527|gb|ABP37570.1| ribosome-binding factor A [Chlorobium phaeovibrioides DSM 265]
Length = 119
Score = 81.5 bits (201), Expect = 4e-14, Method: Composition-based stats.
Identities = 26/113 (23%), Positives = 52/113 (46%), Gaps = 6/113 (5%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVS 67
SRR +V ++ L ++ E + ++++ EV ++ DL +A ++S + +
Sbjct: 2 SRRTEKVASLLQQELGAIL---EKEYPR-GGPLLTVVEVKITADLGLARAFVSIIGNEEE 57
Query: 68 PDRVISALNCNIKFIRGRIGRSLRN-LRYVPELRFRYDTSLQSYWKLNALMCL 119
+ LN K IR + +R+ R +PEL FR D + ++ L+
Sbjct: 58 RAETMEFLNDETKNIRRILSSKIRHQFRRIPELEFREDLLYEKASRIEELLRS 110
>gi|189485239|ref|YP_001956180.1| ribosome-binding factor A [uncultured Termite group 1 bacterium
phylotype Rs-D17]
gi|170287198|dbj|BAG13719.1| ribosome-binding factor A [uncultured Termite group 1 bacterium
phylotype Rs-D17]
Length = 121
Score = 81.5 bits (201), Expect = 4e-14, Method: Composition-based stats.
Identities = 24/121 (19%), Positives = 56/121 (46%), Gaps = 6/121 (4%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
P + +R++RV E ++ + ++ E +D + ++++ ++ DL +Y S+
Sbjct: 2 PLSYKRSVRVSELIQQTISSIV--REMKD--LDAGLVTVMGANLTDDLLSCKIYYSVLGS 57
Query: 66 VSPDRVISA-LNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPV 124
+ ++ L + K +R ++ L NLR P + F YD S + K+ ++ +
Sbjct: 58 EEYKKKVAGILKRSTKQVRHKLALRL-NLRCTPTISFVYDDSNERATKVFDMLQRIEEEK 116
Query: 125 A 125
Sbjct: 117 D 117
>gi|149178850|ref|ZP_01857430.1| probable ribosome-binding factor A [Planctomyces maris DSM 8797]
gi|148842325|gb|EDL56708.1| probable ribosome-binding factor A [Planctomyces maris DSM 8797]
Length = 139
Score = 81.5 bits (201), Expect = 4e-14, Method: Composition-based stats.
Identities = 23/123 (18%), Positives = 57/123 (46%), Gaps = 5/123 (4%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
SRR ++ + + + IL + +D I +++ V ++ D++ A +YIS+ D
Sbjct: 1 MTSRRLEKIAQAILETVSTTILLH-LRDPRIRN--VTVLHVDVAPDVQSAKIYISIMGDE 57
Query: 67 SPDRV-ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
+ + L F++ +I ++ +Y P ++F DT+++ ++ ++
Sbjct: 58 KEKALCMHGLQSAKGFLQSKIADRIQT-KYTPVIKFVLDTAVKDSLDTIRILDELQVERE 116
Query: 126 LEK 128
E+
Sbjct: 117 AEE 119
>gi|119356209|ref|YP_910853.1| ribosome-binding factor A [Chlorobium phaeobacteroides DSM 266]
gi|166218428|sp|A1BDF2|RBFA_CHLPD RecName: Full=Ribosome-binding factor A
gi|119353558|gb|ABL64429.1| ribosome-binding factor A [Chlorobium phaeobacteroides DSM 266]
Length = 116
Score = 81.5 bits (201), Expect = 4e-14, Method: Composition-based stats.
Identities = 27/121 (22%), Positives = 52/121 (42%), Gaps = 8/121 (6%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
S R +V ++ L ++ E + ++++ EV ++ DL +A VY+S+
Sbjct: 2 SIRTEKVASLLQQELGMIL---EKEFPR-GGPILTVVEVKVTADLGIAKVYVSVIGSAKE 57
Query: 69 D-RVISALNCNIKFIRGRIGRSLR-NLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVAL 126
I L K IR + +R + R +PEL F D + ++ L+ ++
Sbjct: 58 QADTIEYLQQEKKNIRKILSSKIRHHFRRIPELEFYQDRLYEKADRIEQLLK--EVRKEQ 115
Query: 127 E 127
E
Sbjct: 116 E 116
>gi|328955632|ref|YP_004372965.1| ribosome-binding factor A [Coriobacterium glomerans PW2]
gi|328455956|gb|AEB07150.1| ribosome-binding factor A [Coriobacterium glomerans PW2]
Length = 132
Score = 81.2 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 34/113 (30%), Positives = 53/113 (46%), Gaps = 5/113 (4%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
K + R+GE++R L +++L E D + D ++I+ V +S D +A V+I+ D
Sbjct: 2 KQTSATRRLGEQLREKLGYILL-TEISDPRL--DFVTITGVEVSTDRALARVFITCERD- 57
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
D V AL IR + RSL R PEL FR D + + +
Sbjct: 58 RYDDVAEALESAKGRIRSILARSLDW-RVTPELDFRIDQATDEAESITRALKN 109
>gi|38234057|ref|NP_939824.1| ribosome-binding factor A [Corynebacterium diphtheriae NCTC 13129]
gi|61215051|sp|Q6NGN3|RBFA_CORDI RecName: Full=Ribosome-binding factor A
gi|38200319|emb|CAE50004.1| Putative ribosome-binding factor A [Corynebacterium diphtheriae]
Length = 147
Score = 81.2 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 56/122 (45%), Gaps = 10/122 (8%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
RA R+ + +++ + I E +DR + +++++ ++ DL ATVY ++ D+
Sbjct: 6 RAARLAKRIQTIVATAIER-EVKDRRLEY--VTVTDTRVTGDLHDATVYYTVRGRTIDDQ 62
Query: 71 -----VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
AL +R +G L ++R+ P L F DT ++ + L+ +
Sbjct: 63 PDLKAAAEALQRARGQLRKIVGDQL-SVRFTPTLSFELDTVPETSAHMEDLLARAR-ARD 120
Query: 126 LE 127
LE
Sbjct: 121 LE 122
>gi|259507491|ref|ZP_05750391.1| ribosome-binding factor A [Corynebacterium efficiens YS-314]
gi|29336724|sp|Q8FPA8|RBFA_COREF RecName: Full=Ribosome-binding factor A
gi|259164979|gb|EEW49533.1| ribosome-binding factor A [Corynebacterium efficiens YS-314]
Length = 149
Score = 81.2 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 58/122 (47%), Gaps = 10/122 (8%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-----LPLD 65
RA R+ + +++ + I E +DR + I+I++V M+ DL ATV+ + + +
Sbjct: 6 RAARMAKRIQTIVASAIER-EIKDRRLEY--ITITDVTMTGDLHDATVFYTVRGENVGDE 62
Query: 66 VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
+ AL+ +R +G L +R+ P L +R DT ++ + AL+ +
Sbjct: 63 PDLEAAAEALHRARGQLRKIVGEQL-GVRFTPTLTYRVDTVPEASAHMEALLERAR-QRD 120
Query: 126 LE 127
E
Sbjct: 121 AE 122
>gi|237756243|ref|ZP_04584804.1| ribosome-binding factor A [Sulfurihydrogenibium yellowstonense
SS-5]
gi|237691601|gb|EEP60648.1| ribosome-binding factor A [Sulfurihydrogenibium yellowstonense
SS-5]
Length = 102
Score = 81.2 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 6/98 (6%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
+ S R +V ++ L +I L + I++S V + DL A V+IS D
Sbjct: 3 EKSHRMEKVNSMLKKELSEIISEEIA---LSKDNFITVSFVDTTADLSEAQVFISALKDE 59
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYD 104
+ ++ LN IR +G+ +R ++ P+L F+ D
Sbjct: 60 --EEILEVLNKQSGHIRYVLGKRIR-IKKTPKLLFKKD 94
>gi|172040532|ref|YP_001800246.1| ribosome-binding factor A [Corynebacterium urealyticum DSM 7109]
gi|238058486|sp|B1VGC3|RBFA_CORU7 RecName: Full=Ribosome-binding factor A
gi|171851836|emb|CAQ04812.1| unnamed protein product [Corynebacterium urealyticum DSM 7109]
Length = 143
Score = 81.2 bits (200), Expect = 5e-14, Method: Composition-based stats.
Identities = 24/113 (21%), Positives = 52/113 (46%), Gaps = 9/113 (7%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
RA R+ + ++ + I E +D + ++I++ M+ DL A+V+ ++ +
Sbjct: 6 RAARMAKRIQQIVAVAIER-EIKDPRLEY--VTITDTRMTGDLHDASVFYTVRGASIDEE 62
Query: 71 -----VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+AL +R +G L ++R+ P L F +DT ++ + L+
Sbjct: 63 PDVPLAAAALESAKGQLRKIVGDQL-SVRFTPTLSFVHDTVPEASAHMEKLLA 114
>gi|118602113|ref|YP_903328.1| ribosome-binding factor A [Candidatus Ruthia magnifica str. Cm
(Calyptogena magnifica)]
gi|171704478|sp|A1AVA0|RBFA_RUTMC RecName: Full=Ribosome-binding factor A
gi|118567052|gb|ABL01857.1| ribosome-binding factor A [Candidatus Ruthia magnifica str. Cm
(Calyptogena magnifica)]
Length = 112
Score = 81.2 bits (200), Expect = 5e-14, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 54/112 (48%), Gaps = 5/112 (4%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
+ S R R+ E +R L + L +D +S +I+ +V S DL A V+ ++
Sbjct: 4 QTSYRVERISELIRRELTLL-LKTTTKDPRLSGVMIT--DVLASRDLSSAKVFYTVTK-E 59
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
V L+ F R R+ ++L +LR+ P L F +D++ + ++ L+
Sbjct: 60 DRTVVEPILSKASGFFRSRLSKTL-DLRHTPALGFIFDSASNTGARIEQLLS 110
>gi|227504829|ref|ZP_03934878.1| ribosome-binding factor A [Corynebacterium striatum ATCC 6940]
gi|227198520|gb|EEI78568.1| ribosome-binding factor A [Corynebacterium striatum ATCC 6940]
Length = 138
Score = 80.8 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 26/118 (22%), Positives = 54/118 (45%), Gaps = 10/118 (8%)
Query: 15 VGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-----DVSPD 69
+ + ++ + I E +DR + +++I++ ++ DL ATVY ++ + D
Sbjct: 1 MAKRIQEIVASAIER-EIKDRRLE--MVTITDTRVTGDLHDATVYYTVRGKDIDSEPDFD 57
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALE 127
+ ALN +R +G L ++R+ P L F DT ++ + L+ + E
Sbjct: 58 KAAEALNRAKGQLRKIVGDQL-SVRFTPTLAFEVDTVPEASAHMEDLLARAR-ARDAE 113
>gi|309810448|ref|ZP_07704275.1| ribosome-binding factor A [Dermacoccus sp. Ellin185]
gi|308435600|gb|EFP59405.1| ribosome-binding factor A [Dermacoccus sp. Ellin185]
Length = 145
Score = 80.8 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 26/118 (22%), Positives = 52/118 (44%), Gaps = 6/118 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-DVSPD 69
RA +V + ++S + + +D + ++I++V ++ DL+ A+V+ ++ D
Sbjct: 6 RARKVADRIKSLVAEYVEFR-LKDERVG--FLTITDVRVTGDLQNASVFYTVFGSDEERA 62
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALE 127
AL N IR +G+ L +R P L F D + L ++ + E
Sbjct: 63 ATAEALADNKGRIRSHVGKGL-GIRLTPTLEFIADAIPEGAAHLEDVLAQTR-ARDEE 118
>gi|307331630|ref|ZP_07610738.1| ribosome-binding factor A [Streptomyces violaceusniger Tu 4113]
gi|306882705|gb|EFN13783.1| ribosome-binding factor A [Streptomyces violaceusniger Tu 4113]
Length = 171
Score = 80.8 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 23/109 (21%), Positives = 50/109 (45%), Gaps = 5/109 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV-SPD 69
RA ++ + +R + + +D + ++I++ ++ DLR ATV+ ++ D
Sbjct: 6 RARKLADRIRVVVAETLQRR-IKDPRLGY--VTITDTRITGDLREATVFYTVFGDDEERA 62
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+AL +R +GR +R+ P L F D ++ ++ L+
Sbjct: 63 ASAAALESAKGVLRSEVGRQ-TGVRFTPTLTFVPDALPENARTIDDLLA 110
>gi|189345845|ref|YP_001942374.1| ribosome-binding factor A [Chlorobium limicola DSM 245]
gi|238692178|sp|B3EFB2|RBFA_CHLL2 RecName: Full=Ribosome-binding factor A
gi|189339992|gb|ACD89395.1| ribosome-binding factor A [Chlorobium limicola DSM 245]
Length = 119
Score = 80.8 bits (199), Expect = 6e-14, Method: Composition-based stats.
Identities = 23/122 (18%), Positives = 58/122 (47%), Gaps = 8/122 (6%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVS 67
S R +V ++ L ++ + +S ++ +V ++ DL +A +Y+S + +
Sbjct: 2 SIRTEKVASLLQQELGAILEKELPRSSALS----TVVDVKVTADLGIARIYVSVIGTEEQ 57
Query: 68 PDRVISALNCNIKFIRGRIGRSLR-NLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVAL 126
+++ L+ K++R + +R + R +PE+ F D + ++ L+ ++ A
Sbjct: 58 RTAIMAWLHDETKYLRKLLSAKIRHHFRRIPEIEFFEDRIYERASRIEQLLR--EVRKAP 115
Query: 127 EK 128
E+
Sbjct: 116 EQ 117
>gi|297562523|ref|YP_003681497.1| ribosome-binding factor A [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
gi|296846971|gb|ADH68991.1| ribosome-binding factor A [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
Length = 147
Score = 80.8 bits (199), Expect = 6e-14, Method: Composition-based stats.
Identities = 22/108 (20%), Positives = 49/108 (45%), Gaps = 5/108 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS-PD 69
RA ++ + ++ + ++ +D + +++++ ++ DLR ATVY ++
Sbjct: 6 RARKIADRIQRIVAEMLDRR-IKDPRLG--FVTVTDARITADLRDATVYYTVFGTPDEKA 62
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+AL IR +GR +R+ P L F D ++ + L+
Sbjct: 63 ASAAALESAKGVIRSEVGRQ-TGIRHTPSLAFVVDEVQENAQHIEELL 109
>gi|188996791|ref|YP_001931042.1| ribosome-binding factor A [Sulfurihydrogenibium sp. YO3AOP1]
gi|188931858|gb|ACD66488.1| ribosome-binding factor A [Sulfurihydrogenibium sp. YO3AOP1]
Length = 102
Score = 80.8 bits (199), Expect = 6e-14, Method: Composition-based stats.
Identities = 24/98 (24%), Positives = 46/98 (46%), Gaps = 6/98 (6%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
+ S R +V ++ L +I + + I+++ V + DL A V+IS D
Sbjct: 3 EKSHRMEKVNSMLKKELSEIISEEIALPKD---NFITVNFVDTTADLSEAQVFISALKDE 59
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYD 104
+ ++ LN IR +G+ +R ++ P+L F+ D
Sbjct: 60 --EEILEVLNKQSGHIRYVLGKRIR-IKKTPKLLFKKD 94
>gi|293363356|ref|ZP_06610178.1| ribosome-binding factor A [Mycoplasma alligatoris A21JP2]
gi|292553025|gb|EFF41776.1| ribosome-binding factor A [Mycoplasma alligatoris A21JP2]
Length = 114
Score = 80.8 bits (199), Expect = 6e-14, Method: Composition-based stats.
Identities = 23/109 (21%), Positives = 47/109 (43%), Gaps = 6/109 (5%)
Query: 13 LRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVI 72
R ++ + +I +I + +V +S DL V+++ + +
Sbjct: 7 QRKESQIHQLIASIITIEITNVNVIDPV---VMDVKLSADLSHCKVFVNF--GSKKQKGL 61
Query: 73 SALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+LN + FIR + RSL+ R VP + F +D + ++A++ K
Sbjct: 62 ESLNNSAGFIRSSLSRSLKW-RKVPHIHFYHDEVSEYGSNIDAILRNIK 109
>gi|159473747|ref|XP_001694995.1| predicted protein [Chlamydomonas reinhardtii]
gi|158276374|gb|EDP02147.1| predicted protein [Chlamydomonas reinhardtii]
Length = 196
Score = 80.8 bits (199), Expect = 6e-14, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 56/120 (46%), Gaps = 14/120 (11%)
Query: 10 RRALRVGEEVRSALMWVIL-----------NNEFQDRLISRDVISISEVCMSVDLRVATV 58
RR +V ++ + + + + D +S V SI++ +S DL+V V
Sbjct: 66 RRVAKVASAIQREIGDMFVSDPVIQAAICPERKLGDDALSA-VASITDTYVSNDLQVVKV 124
Query: 59 YISLPLDVSPDRV-ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
++S+ D RV + L ++R IG+ +R LR PE+RF YD + + + ++
Sbjct: 125 FVSVYSDDYGKRVAMENLQRLEPYVRRLIGQRVR-LRLTPEVRFVYDDAEEEADLVARVI 183
>gi|221195793|ref|ZP_03568846.1| ribosome-binding factor A [Atopobium rimae ATCC 49626]
gi|221184267|gb|EEE16661.1| ribosome-binding factor A [Atopobium rimae ATCC 49626]
Length = 138
Score = 80.8 bits (199), Expect = 6e-14, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 55/121 (45%), Gaps = 7/121 (5%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
K ++ + R E R L ++L E D + +++++ +SVD V+IS D
Sbjct: 2 KQNQYSRRTNEIAREKLANILLF-EISDPDL--QLVTVTGCEVSVDKSFMRVFISCEPD- 57
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVAL 126
+ V +A IR +G +L+ R P+L F+ DT+ ++ + +P L
Sbjct: 58 RYEVVTAACKRAKGRIRTLLGHALKW-RVTPDLEFKIDTTTDEAERIARALEQ--VPSTL 114
Query: 127 E 127
E
Sbjct: 115 E 115
>gi|325677913|ref|ZP_08157555.1| ribosome-binding factor A [Ruminococcus albus 8]
gi|324110467|gb|EGC04641.1| ribosome-binding factor A [Ruminococcus albus 8]
Length = 132
Score = 80.4 bits (198), Expect = 7e-14, Method: Composition-based stats.
Identities = 20/112 (17%), Positives = 47/112 (41%), Gaps = 5/112 (4%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLI-SRDVISISEVCMSVDLRVATVYISLPLDVS 67
S +A R+ E++R + + + +D I + +++ ++ D VYIS +
Sbjct: 3 SHKAGRMSEDIRRIISGKMA--DLKDPRINGGEFLTVVRCDVARDGSFCRVYISSFKGID 60
Query: 68 P-DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ + +++ I + L+ PEL+F D S++ + +
Sbjct: 61 EAKKAVKGFESATGYLKREISN-VLGLKKCPELKFVADDSIEHSAAITKKLR 111
>gi|238063384|ref|ZP_04608093.1| ribosome-binding factor A [Micromonospora sp. ATCC 39149]
gi|237885195|gb|EEP74023.1| ribosome-binding factor A [Micromonospora sp. ATCC 39149]
Length = 164
Score = 80.4 bits (198), Expect = 7e-14, Method: Composition-based stats.
Identities = 26/119 (21%), Positives = 56/119 (47%), Gaps = 10/119 (8%)
Query: 12 ALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD-VSPDR 70
R E +R L+ ++ ++ +D + +I+I++ ++ DLR ATV+ ++ D +
Sbjct: 7 VRRHAERIR-ELVASVVRSQIKDPRLG--MITITDARITADLRDATVFYTVLGDAAAQSS 63
Query: 71 VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM-----CLPKIPV 124
+AL +R +G++L LR+ P L F D +++ L+ ++
Sbjct: 64 TAAALESAKGMLRSTVGKAL-GLRHSPSLTFVLDDVQNQVKQIDDLLAAARHADAEVQR 121
>gi|317057647|ref|YP_004106114.1| ribosome-binding factor A [Ruminococcus albus 7]
gi|315449916|gb|ADU23480.1| ribosome-binding factor A [Ruminococcus albus 7]
Length = 131
Score = 80.4 bits (198), Expect = 7e-14, Method: Composition-based stats.
Identities = 20/112 (17%), Positives = 46/112 (41%), Gaps = 5/112 (4%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLI-SRDVISISEVCMSVDLRVATVYISLPLD-V 66
S +A R+ E++R + + + +D I + +++ ++ D VYIS
Sbjct: 3 SHKAGRMSEDIRRIISGKMA--DLKDPRINGGEFLTVVRCDVARDGSFCKVYISSFRGLE 60
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ + +++ I + L+ PEL+F D S++ + +
Sbjct: 61 EAKKAVKGFESATGYLKREISN-VLGLKKCPELKFVADDSIEHSAAITKKLR 111
>gi|256370674|ref|YP_003108499.1| putative ribosome-binding factor A [Candidatus Sulcia muelleri
SMDSEM]
gi|256009466|gb|ACU52826.1| putative ribosome-binding factor A [Candidatus Sulcia muelleri
SMDSEM]
Length = 136
Score = 80.4 bits (198), Expect = 8e-14, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 56/122 (45%), Gaps = 4/122 (3%)
Query: 4 KNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP 63
KN +S + R ++ + + R I I++V ++ D +A ++IS
Sbjct: 7 KNNLSSIKNKRAAILIKKEISSIFNRKLIYSP--HRIFIIITQVILNSDFSLAKIFISFF 64
Query: 64 LDVSPDRVISALNCNIKFIRGRIGRSLR-NLRYVPELRFRYDTSLQSYWKLN-ALMCLPK 121
+ +I +N KF + + ++LR + + +P + F D SL+ K+N AL+ +
Sbjct: 65 PKKNQYSLIKKINKKSKFYKKILFQNLRFHFKKMPNISFYIDDSLEYIDKINKALLGKEE 124
Query: 122 IP 123
P
Sbjct: 125 NP 126
>gi|284992348|ref|YP_003410902.1| ribosome-binding factor A [Geodermatophilus obscurus DSM 43160]
gi|284065593|gb|ADB76531.1| ribosome-binding factor A [Geodermatophilus obscurus DSM 43160]
Length = 171
Score = 80.4 bits (198), Expect = 9e-14, Method: Composition-based stats.
Identities = 22/110 (20%), Positives = 53/110 (48%), Gaps = 5/110 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP-D 69
RA ++ +R + I ++ +D + ++++++ ++ DLR ATV+ ++ D + +
Sbjct: 6 RARKLAVRIRQIVSAAI-ESQIKDPRLG--MVTVTDARVTSDLREATVFYTVYGDATQVE 62
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
AL +R +G+ +++VP L F D + +L+ +
Sbjct: 63 DSARALASATGVLRSTVGKQ-TGIKFVPTLAFVADHVPDTARELDEALER 111
>gi|300933071|ref|ZP_07148327.1| ribosome-binding factor A [Corynebacterium resistens DSM 45100]
Length = 150
Score = 80.0 bits (197), Expect = 9e-14, Method: Composition-based stats.
Identities = 25/118 (21%), Positives = 50/118 (42%), Gaps = 9/118 (7%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
RA R+ + ++ + I E +D + +++++ M+ DL ATV+ ++ D
Sbjct: 6 RAARMAKRIQQIVATAIER-EIKDPRLE--FVTVTDARMTGDLHDATVFYTVRGKNLEDE 62
Query: 71 -----VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIP 123
AL +R +G L +R+ P L F DT ++ L ++ +
Sbjct: 63 PDWASAERALTKARGQLRKIVGDQL-GVRFTPTLSFEVDTVPEASAHLEEVLAKARAQ 119
>gi|281355266|ref|ZP_06241760.1| ribosome-binding factor A [Victivallis vadensis ATCC BAA-548]
gi|281318146|gb|EFB02166.1| ribosome-binding factor A [Victivallis vadensis ATCC BAA-548]
Length = 121
Score = 80.0 bits (197), Expect = 1e-13, Method: Composition-based stats.
Identities = 30/113 (26%), Positives = 54/113 (47%), Gaps = 6/113 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
R RV E ++ + I ++S++EV SVDLR ATVY+S+ + R
Sbjct: 7 RLTRVNELLKREIANAIERGLITAP---GMLVSVTEVNTSVDLRNATVYVSIFGGDNAAR 63
Query: 71 --VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
V++ L + ++ R+L ++ P L FR DT ++ ++ L+ +
Sbjct: 64 RKVMNELGEQRLDFQRKLARTL-AFKHTPVLDFRLDTRIEKGDRVFELLNEVE 115
>gi|189499379|ref|YP_001958849.1| ribosome-binding factor A [Chlorobium phaeobacteroides BS1]
gi|238692260|sp|B3ELN9|RBFA_CHLPB RecName: Full=Ribosome-binding factor A
gi|189494820|gb|ACE03368.1| ribosome-binding factor A [Chlorobium phaeobacteroides BS1]
Length = 116
Score = 80.0 bits (197), Expect = 1e-13, Method: Composition-based stats.
Identities = 23/111 (20%), Positives = 50/111 (45%), Gaps = 6/111 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
R +V ++ L + E + + ++ +V ++ DL +A VY+S+ +
Sbjct: 4 RTEKVASLLQKELSAIF---EKELPRSGPLM-TVVQVKVTTDLGIARVYVSIIGSEKERK 59
Query: 71 V-ISALNCNIKFIRGRIGRSLRN-LRYVPELRFRYDTSLQSYWKLNALMCL 119
I+ L ++IR + +R+ R +PEL F D + +++ L+
Sbjct: 60 TAIAHLQNETRYIRKLLSAKIRHQFRRIPELEFYEDRLYEKAERIDLLIKQ 110
>gi|303248246|ref|ZP_07334509.1| ribosome-binding factor A [Desulfovibrio fructosovorans JJ]
gi|302490384|gb|EFL50295.1| ribosome-binding factor A [Desulfovibrio fructosovorans JJ]
Length = 111
Score = 80.0 bits (197), Expect = 1e-13, Method: Composition-based stats.
Identities = 33/105 (31%), Positives = 54/105 (51%), Gaps = 5/105 (4%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K SRR+ R+ +++ + + + QD + +++IS ++ DL +A VY +L D
Sbjct: 3 AKPSRRSSRLADQIAREMALALA-EDVQDPRLE--LVTISGAALNADLSIARVYYTLSGD 59
Query: 66 -VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQS 109
AL F+R +G+ LR LR VP+LRF DT L+
Sbjct: 60 EARLAEAAEALEQAKGFLRTLLGKRLR-LRAVPQLRFARDTFLED 103
>gi|162454072|ref|YP_001616439.1| hypothetical protein sce5796 [Sorangium cellulosum 'So ce 56']
gi|182676543|sp|A9G882|RBFA_SORC5 RecName: Full=Ribosome-binding factor A
gi|161164654|emb|CAN95959.1| rbfA [Sorangium cellulosum 'So ce 56']
Length = 124
Score = 80.0 bits (197), Expect = 1e-13, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 9/116 (7%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPD 69
+RA RV E +R L ++ + +D I+ ++S V ++ DL+ A V++
Sbjct: 6 KRATRVAERLREDLSNLL--RDLRDPRIAGVLVS--RVEITDDLQSAKVHVRHEFGAEDA 61
Query: 70 R----VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
++ L +R + R++ LR VP LRF YD + ++ L+ K
Sbjct: 62 AARRALLKGLEAASGRLRRDVARTM-GLRVVPTLRFFYDEGPDAERRIEELLREIK 116
>gi|319441536|ref|ZP_07990692.1| ribosome-binding factor A [Corynebacterium variabile DSM 44702]
Length = 159
Score = 79.6 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 24/116 (20%), Positives = 54/116 (46%), Gaps = 9/116 (7%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-----D 65
RA R+ + + + + I E +DR + +++++ ++ DL ATV+ ++ +
Sbjct: 6 RAARMAKRIMTIVASAIER-EVKDRRLEY--VTVTDCRVTGDLHDATVFYTVRGAGIDEE 62
Query: 66 VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+ AL+ +R +G L ++R+ P L F DT ++ + L+ +
Sbjct: 63 PDTEAAAEALHRARGQLRKIVGDQL-SVRFTPTLSFSLDTVPEASAHMEELLARAR 117
>gi|145224618|ref|YP_001135296.1| ribosome-binding factor A [Mycobacterium gilvum PYR-GCK]
gi|315444950|ref|YP_004077829.1| ribosome-binding factor A [Mycobacterium sp. Spyr1]
gi|189039548|sp|A4TCF7|RBFA_MYCGI RecName: Full=Ribosome-binding factor A
gi|145217104|gb|ABP46508.1| ribosome-binding factor A [Mycobacterium gilvum PYR-GCK]
gi|315263253|gb|ADT99994.1| ribosome-binding factor A [Mycobacterium sp. Spyr1]
Length = 168
Score = 79.6 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 25/114 (21%), Positives = 53/114 (46%), Gaps = 9/114 (7%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
RA R+ + + + + I E +D ++ ++I++ ++ DL AT+Y ++ +
Sbjct: 6 RAKRLAKRISTIVASAI-EYEIKDPRLAG--VTITDAKVTNDLHDATLYYTVLGRSLDEE 62
Query: 71 -----VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ L +R ++G SL +R+ P L F DT + ++ AL+
Sbjct: 63 PDYEGAAAGLEKAKGVLRTKVGASL-GVRFTPTLAFARDTVPDAAHRMEALLAQ 115
>gi|19553188|ref|NP_601190.1| ribosome-binding factor A [Corynebacterium glutamicum ATCC 13032]
gi|62390824|ref|YP_226226.1| ribosome-binding factor A [Corynebacterium glutamicum ATCC 13032]
gi|24418640|sp|Q8NP41|RBFA_CORGL RecName: Full=Ribosome-binding factor A
gi|21324754|dbj|BAB99377.1| Ribosome-binding factor A [Corynebacterium glutamicum ATCC 13032]
gi|41326162|emb|CAF20325.1| Ribosome-binding factor A [Corynebacterium glutamicum ATCC 13032]
Length = 149
Score = 79.6 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 57/122 (46%), Gaps = 10/122 (8%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-----D 65
RA R+ + +++ + I + +DR + ++I++V M+ DL A V+ ++ +
Sbjct: 6 RAARMAKRIQTIVASAIER-DIKDRRLE--FVTITDVTMTGDLHDAKVFYTVRGASIEEE 62
Query: 66 VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
+ AL+ +R +G+ L +R+ P L + DT ++ + AL+ +
Sbjct: 63 PDLEAAAEALHRARGQLRKIVGQQL-GVRFTPTLTYSIDTVPEASAHMEALLDRAR-KRD 120
Query: 126 LE 127
E
Sbjct: 121 EE 122
>gi|308189640|ref|YP_003922571.1| ribosome-binding factor A [Mycoplasma fermentans JER]
gi|307624382|gb|ADN68687.1| ribosome-binding factor A [Mycoplasma fermentans JER]
Length = 325
Score = 79.6 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 28/110 (25%), Positives = 51/110 (46%), Gaps = 6/110 (5%)
Query: 12 ALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRV 71
LR ++R+ L +I N+ +I+ ++ + +S DL +Y+S + R
Sbjct: 7 TLRRESQIRTLLAEIITNDLTNTNIINPTLV---DCELSGDLSHVKIYMSF--SENEKRG 61
Query: 72 ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+ AL +IR + +SL N R VPEL F D + ++ ++ K
Sbjct: 62 LEALQNASGYIRTILAKSL-NWRKVPELHFYIDEVSKKGLSIDRILYDIK 110
>gi|300858697|ref|YP_003783680.1| ribosome-binding factor A [Corynebacterium pseudotuberculosis
FRC41]
gi|300686151|gb|ADK29073.1| Ribosome-binding factor A [Corynebacterium pseudotuberculosis
FRC41]
gi|302206407|gb|ADL10749.1| Ribosome-binding factor A [Corynebacterium pseudotuberculosis C231]
gi|302330963|gb|ADL21157.1| Ribosome-binding factor A [Corynebacterium pseudotuberculosis 1002]
gi|308276650|gb|ADO26549.1| Ribosome-binding factor A [Corynebacterium pseudotuberculosis I19]
Length = 145
Score = 79.2 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 27/122 (22%), Positives = 53/122 (43%), Gaps = 10/122 (8%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV---- 66
RA R+ + +++ + I E +D + +++++ ++ DL ATVY ++
Sbjct: 6 RAARLAKRIQTIVATAIER-EIKDYRLEY--VTVTDTRVTGDLHDATVYYTVRGRSIEDT 62
Query: 67 -SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
+ AL +R +G L ++R+ P L F DT +S + L+ K
Sbjct: 63 PDVEGAAEALKRARGQLRKIVGDQL-SVRFTPTLSFELDTVPESSAHMEDLLARAK-ARD 120
Query: 126 LE 127
E
Sbjct: 121 AE 122
>gi|157364232|ref|YP_001470999.1| ribosome-binding factor A [Thermotoga lettingae TMO]
gi|166918679|sp|A8F701|RBFA_THELT RecName: Full=Ribosome-binding factor A
gi|157314836|gb|ABV33935.1| ribosome-binding factor A [Thermotoga lettingae TMO]
Length = 119
Score = 79.2 bits (195), Expect = 2e-13, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 53/112 (47%), Gaps = 4/112 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPD- 69
R + E+ + + E +D IS +I+IS V +S D R A VY+S D
Sbjct: 6 RKAMLESEIMKLITEAL--REAKDPKISGQIITISRVELSNDKRFADVYVSAMGDKDERV 63
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+ + L+ + R + +L +L P++RF+ D +++ ++ L+ K
Sbjct: 64 KTVEYLDKIKGYFRTYLANNL-DLYTAPQIRFKEDPGIEASVRIQELLNKIK 114
>gi|209525403|ref|ZP_03273943.1| ribosome-binding factor A [Arthrospira maxima CS-328]
gi|209494083|gb|EDZ94398.1| ribosome-binding factor A [Arthrospira maxima CS-328]
Length = 105
Score = 79.2 bits (195), Expect = 2e-13, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 51 VDLRVATVYISLPL-DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQS 109
DL+ A +++S+ + + + L +IR +G+ +R LR PE+ F D SL+
Sbjct: 13 GDLQHAKIFVSIYGTEEARRSTMEGLRSATGYIRSHLGKHIR-LRRTPEVVFLEDRSLER 71
Query: 110 YWKLNALMCL 119
K+ L+
Sbjct: 72 GDKIIELLNQ 81
>gi|117928720|ref|YP_873271.1| ribosome-binding factor A [Acidothermus cellulolyticus 11B]
gi|166218413|sp|A0LV25|RBFA_ACIC1 RecName: Full=Ribosome-binding factor A
gi|117649183|gb|ABK53285.1| ribosome-binding factor A [Acidothermus cellulolyticus 11B]
Length = 150
Score = 79.2 bits (195), Expect = 2e-13, Method: Composition-based stats.
Identities = 23/112 (20%), Positives = 52/112 (46%), Gaps = 5/112 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV-SPD 69
RA ++ + ++ + + +D + ++I++ ++ DLR ATV+ ++ D +
Sbjct: 6 RARKLADRIKVVVAETLERR-VKDPRLG--FVTITDARVTPDLREATVFYTVLGDDTALA 62
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+AL +R +GR +R+ P L F DT + ++ L+ +
Sbjct: 63 ETAAALESAKGVLRAEVGRQ-TQVRFTPTLTFVPDTVPRQARQIEELLARAR 113
>gi|160903126|ref|YP_001568707.1| ribosome-binding factor A [Petrotoga mobilis SJ95]
gi|182676541|sp|A9BI93|RBFA_PETMO RecName: Full=Ribosome-binding factor A
gi|160360770|gb|ABX32384.1| ribosome-binding factor A [Petrotoga mobilis SJ95]
Length = 117
Score = 79.2 bits (195), Expect = 2e-13, Method: Composition-based stats.
Identities = 27/111 (24%), Positives = 51/111 (45%), Gaps = 4/111 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
R + E++ + +D + I I+ V +S D VY+S LD D
Sbjct: 5 RREMLESEMKKLITQGFSQ--LKDPRLKDKFIDINMVRLSKDKSYLDVYVS-SLDEDIDT 61
Query: 71 VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+I+ LN R I ++++ + VPE+RF D +++ ++N L+ +
Sbjct: 62 IINILNNAKGMFRTLIAKNIKMFK-VPEVRFHKDEGIEASIRINKLIEKIE 111
>gi|145295888|ref|YP_001138709.1| ribosome-binding factor A [Corynebacterium glutamicum R]
gi|166218435|sp|A4QEZ1|RBFA_CORGB RecName: Full=Ribosome-binding factor A
gi|140845808|dbj|BAF54807.1| hypothetical protein [Corynebacterium glutamicum R]
Length = 149
Score = 79.2 bits (195), Expect = 2e-13, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 57/122 (46%), Gaps = 10/122 (8%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-----D 65
RA R+ + +++ + I + +DR + ++I++V M+ DL A V+ ++ +
Sbjct: 6 RAARMAKRIQTIVASAIER-DIKDRRLE--FVTITDVTMTGDLHDAKVFYTVRGASIEEE 62
Query: 66 VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
+ AL+ +R +G+ L +R+ P L + DT ++ + AL+ +
Sbjct: 63 PDLEAAAEALHRARGQLRKIVGQQL-GVRFTPTLTYSIDTVPEASAHMEALLDRAR-KRD 120
Query: 126 LE 127
E
Sbjct: 121 EE 122
>gi|319776797|ref|YP_004136448.1| hypothetical protein MfeM64YM_0061 [Mycoplasma fermentans M64]
gi|318037872|gb|ADV34071.1| Hypothetical Protein MfeM64YM_0061 [Mycoplasma fermentans M64]
Length = 325
Score = 78.8 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 28/110 (25%), Positives = 51/110 (46%), Gaps = 6/110 (5%)
Query: 12 ALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRV 71
LR ++R+ L +I N+ +I+ ++ + +S DL +Y+S + R
Sbjct: 7 TLRRESQIRTLLAEIITNDLTNTNIINPTLV---DCELSGDLSHVKIYMSF--SENEKRG 61
Query: 72 ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+ AL +IR + +SL N R VPEL F D + ++ ++ K
Sbjct: 62 LEALQNASGYIRTILAKSL-NWRKVPELHFYIDEVSKKGLSIDRILYDIK 110
>gi|333024100|ref|ZP_08452164.1| putative ribosome-binding factor A [Streptomyces sp. Tu6071]
gi|332743952|gb|EGJ74393.1| putative ribosome-binding factor A [Streptomyces sp. Tu6071]
Length = 175
Score = 78.8 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 24/118 (20%), Positives = 52/118 (44%), Gaps = 6/118 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV-SPD 69
RA ++ + ++ + + +D + ++I++ ++ DLR ATV+ ++ D
Sbjct: 6 RARKLADRIQVVVAQTLERR-IKDPRLG--FVTITDARVTGDLREATVFYTVYGDDEERA 62
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALE 127
+AL +R +GR +RY P L F D + ++ L+ ++ E
Sbjct: 63 ASAAALESAKGVLRSEVGRQ-TGVRYTPSLAFVPDALPDTARTIDDLLDRARL-RDEE 118
>gi|120403306|ref|YP_953135.1| ribosome-binding factor A [Mycobacterium vanbaalenii PYR-1]
gi|166219380|sp|A1T7H9|RBFA_MYCVP RecName: Full=Ribosome-binding factor A
gi|119956124|gb|ABM13129.1| ribosome-binding factor A [Mycobacterium vanbaalenii PYR-1]
Length = 163
Score = 78.8 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 25/113 (22%), Positives = 53/113 (46%), Gaps = 9/113 (7%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
RA R+ + + + + I E +D ++ ++I++ ++ DL AT+Y ++ +
Sbjct: 6 RAKRLAKRISTIVASAI-EYEIKDPRLAG--VTITDAKVTNDLHDATLYYTVLGRSLDEE 62
Query: 71 -----VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ L +R ++G SL +R+ P L F DT + ++ AL+
Sbjct: 63 PDYEGAAAGLEKAKGVLRTKVGASL-GVRFTPTLAFARDTVPDTAHRMEALLA 114
>gi|147834309|emb|CAN61115.1| hypothetical protein VITISV_035585 [Vitis vinifera]
Length = 731
Score = 78.8 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 43 SISEVCMSVDLRVATVYISLPLDVSPDRV-ISALNCNIKFIRGRIGRSLRNLRYVPELRF 101
SI +S V VY+S+ D V I+ L K++R +GR ++ LR PE+RF
Sbjct: 654 SIWRANVSP--TVVKVYVSVFGDEKGKEVAIAGLKSKAKYVRSELGRRMK-LRLTPEIRF 710
Query: 102 RYDTSLQSYWK 112
D SL+ +
Sbjct: 711 VEDESLERGSR 721
Score = 46.1 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 13/59 (22%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQ------------DRLISRDVISISEVCMSVDLR 54
N RR V +++R L ++L ++ DR +S + +IS+V +S DL+
Sbjct: 343 NQRRVKMVAKQIRRELSDMLLTDKVLQFAVLPEAALGADRYLSS-LTTISDVEVSADLQ 400
>gi|189219876|ref|YP_001940517.1| Ribosome-binding factor A [Methylacidiphilum infernorum V4]
gi|189186734|gb|ACD83919.1| Ribosome-binding factor A [Methylacidiphilum infernorum V4]
Length = 116
Score = 78.8 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 29/110 (26%), Positives = 57/110 (51%), Gaps = 6/110 (5%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-DVS 67
+ RA+RV E +R L + + V++IS V + DL+ A++++SL +S
Sbjct: 2 TSRAIRVSEVIRRELSFCFQREV----ELEGLVLTISSVETTADLKEASIFVSLFDASIS 57
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ ++ LN + + IG+ L++ ++ P L F+ D SL K+ ++
Sbjct: 58 DELLLDILNRHRSEWQRWIGKRLQS-KFTPRLTFKIDDSLYRGDKVLRII 106
>gi|167772654|ref|ZP_02444707.1| hypothetical protein ANACOL_04035 [Anaerotruncus colihominis DSM
17241]
gi|167665132|gb|EDS09262.1| hypothetical protein ANACOL_04035 [Anaerotruncus colihominis DSM
17241]
Length = 118
Score = 78.8 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 27/114 (23%), Positives = 48/114 (42%), Gaps = 5/114 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD-VSPD 69
RA R E++ L ++ +D +S +ISI ++ ++ DL VYIS +
Sbjct: 5 RASRTEEDIHRELCDIM--RGLKDPRVSG-LISIVKLDLARDLSHCKVYISSMDGIAAAK 61
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIP 123
+ L FI+ + L+ LR +PE F D S+ + ++
Sbjct: 62 SAAAGLRSAQGFIKRELNARLK-LRKLPEFSFIADDSIAHSADIARILDGLHTQ 114
>gi|302522228|ref|ZP_07274570.1| ribosome-binding factor A [Streptomyces sp. SPB78]
gi|302431123|gb|EFL02939.1| ribosome-binding factor A [Streptomyces sp. SPB78]
Length = 171
Score = 78.5 bits (193), Expect = 3e-13, Method: Composition-based stats.
Identities = 24/118 (20%), Positives = 52/118 (44%), Gaps = 6/118 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV-SPD 69
RA ++ + ++ + + +D + ++I++ ++ DLR ATV+ ++ D
Sbjct: 6 RARKLADRIQVVVAQTLERR-IKDPRLG--FVTITDARVTGDLREATVFYTVYGDDEERA 62
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALE 127
+AL +R +GR +RY P L F D + ++ L+ ++ E
Sbjct: 63 ASAAALESAKGVLRSEVGRQ-TGVRYTPSLAFVPDALPDTARTIDDLLDRARL-RDEE 118
>gi|189501698|ref|YP_001957415.1| hypothetical protein Aasi_0243 [Candidatus Amoebophilus asiaticus
5a2]
gi|189497139|gb|ACE05686.1| hypothetical protein Aasi_0243 [Candidatus Amoebophilus asiaticus
5a2]
Length = 125
Score = 78.5 bits (193), Expect = 3e-13, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 37 ISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRN-LRY 95
+++++ + + RV VY+S + R+I L + IRG +G+ L N LR
Sbjct: 30 FGNILVTVTSLYICDKTRVVKVYVSFMPSQNGPRMIKELEKHKSKIRGLLGKRLANKLRS 89
Query: 96 VPELRFRYDTSLQSYWKLNALMCLPKIP 123
+PEL+F D S++ + + L+ ++
Sbjct: 90 IPELKFHLDNSIERAYHIEKLLNGFEVS 117
>gi|225848986|ref|YP_002729150.1| ribosome-binding factor A [Sulfurihydrogenibium azorense Az-Fu1]
gi|225643458|gb|ACN98508.1| ribosome-binding factor A [Sulfurihydrogenibium azorense Az-Fu1]
Length = 100
Score = 78.1 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 30/105 (28%), Positives = 52/105 (49%), Gaps = 12/105 (11%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISR-DVISISEVCMSVDLRVATVY 59
MK K S R ++ ++ + +I F + I + + I+IS + DL A +Y
Sbjct: 1 MKEK----SHRMEKINSLLKKEISDII----FHEYEIGQENFITISVIDTKADLSQADIY 52
Query: 60 ISLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYD 104
+S D D++I ALN IR +G+ +R ++ P+L F+ D
Sbjct: 53 VSALKDE--DQIIDALNKESGHIRYILGKKIR-MKKTPKLVFKKD 94
>gi|257055494|ref|YP_003133326.1| ribosome-binding factor A [Saccharomonospora viridis DSM 43017]
gi|256585366|gb|ACU96499.1| ribosome-binding factor A [Saccharomonospora viridis DSM 43017]
Length = 153
Score = 78.1 bits (192), Expect = 4e-13, Method: Composition-based stats.
Identities = 23/96 (23%), Positives = 44/96 (45%), Gaps = 8/96 (8%)
Query: 28 LNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV-----SPDRVISALNCNIKFI 82
L +E +D + +++++ ++ DLR ATVY ++ D +AL +
Sbjct: 22 LEHEIKDPRLGN--VTVTDARVTGDLRDATVYYTVLGDSLDSPPDFAGAAAALESARGVL 79
Query: 83 RGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
R ++G+ +RY P L F D Q ++ L+
Sbjct: 80 RSKVGQG-TGVRYTPTLTFVPDQLPQDARHIDELLA 114
>gi|50365189|ref|YP_053614.1| ribosome-binding factor A [Mesoplasma florum L1]
gi|50363745|gb|AAT75730.1| ribosome-binding factor A [Mesoplasma florum L1]
Length = 116
Score = 78.1 bits (192), Expect = 4e-13, Method: Composition-based stats.
Identities = 29/103 (28%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 19 VRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL---DVSPDRVISAL 75
+ L +I+ E ++ ++ +SI+EV ++ D +A +Y S +++ + + S L
Sbjct: 14 ILRELT-IIIEREMKNDVLRA--LSIAEVRLTNDSEIAKIYWSFLPLNKEITKELIASEL 70
Query: 76 NCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
N K IR ++ L N R VP+L F YDTSL++ ++ ++
Sbjct: 71 EENKKTIRMKLAHKL-NTRTVPDLFFEYDTSLENANRIEEILN 112
>gi|118472364|ref|YP_886966.1| ribosome-binding factor A [Mycobacterium smegmatis str. MC2 155]
gi|166218451|sp|A0QVM8|RBFA_MYCS2 RecName: Full=Ribosome-binding factor A
gi|118173651|gb|ABK74547.1| ribosome-binding factor A [Mycobacterium smegmatis str. MC2 155]
Length = 156
Score = 78.1 bits (192), Expect = 4e-13, Method: Composition-based stats.
Identities = 25/116 (21%), Positives = 54/116 (46%), Gaps = 9/116 (7%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-----D 65
RA R+ + + + + I E +D ++ ++I++ +S DL AT+Y ++ D
Sbjct: 6 RAKRLAKRISTIVASAI-EYEIKDPRLAG--VTITDAKVSGDLHDATLYYTVLGASLDED 62
Query: 66 VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+ +AL +R ++G + +R+ P L F DT + ++ L+ +
Sbjct: 63 PDYEGAAAALEKAKGVLRTKVG-AGTGVRFTPTLAFVRDTVPDAAHRMEELLARAR 117
>gi|111023605|ref|YP_706577.1| ribosome-binding factor A [Rhodococcus jostii RHA1]
gi|123339653|sp|Q0S217|RBFA_RHOSR RecName: Full=Ribosome-binding factor A
gi|110823135|gb|ABG98419.1| ribosome-binding factor A [Rhodococcus jostii RHA1]
Length = 162
Score = 77.7 bits (191), Expect = 4e-13, Method: Composition-based stats.
Identities = 21/120 (17%), Positives = 53/120 (44%), Gaps = 9/120 (7%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-----D 65
RA ++ + + + + I ++E +D ++ +++++ ++ DL ATVY ++ +
Sbjct: 6 RARKLAKRIGTIVATAI-DHEIKDPRLA--FVTVTDTKVTADLHDATVYYTVMGADLESE 62
Query: 66 VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
+ L +R ++G + +R+ P L F DT + + L+ +
Sbjct: 63 PDLAAAAAGLEKAKGVLRSKVG-AGTGVRFTPTLTFVADTVPDTARHMEELLARARAADD 121
>gi|134102371|ref|YP_001108032.1| ribosome-binding factor A [Saccharopolyspora erythraea NRRL 2338]
gi|291009315|ref|ZP_06567288.1| ribosome-binding factor A [Saccharopolyspora erythraea NRRL 2338]
gi|166219402|sp|A4FM32|RBFA_SACEN RecName: Full=Ribosome-binding factor A
gi|133914994|emb|CAM05107.1| ribosome-binding factor A [Saccharopolyspora erythraea NRRL 2338]
Length = 166
Score = 77.7 bits (191), Expect = 5e-13, Method: Composition-based stats.
Identities = 27/112 (24%), Positives = 54/112 (48%), Gaps = 5/112 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV-SPD 69
RA R+ + + + + E +D ++ +++I++ ++ DLR ATVY ++ D
Sbjct: 6 RARRLAKRIAQIVASGL-EYEVKDPRLA--MVTITDARVTPDLRDATVYYTVFGDDADHA 62
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+AL +R R+G+ +R+ P L F DT +L+ L+ +
Sbjct: 63 STAAALASATGVLRSRVGQQ-TGVRFTPTLTFVADTVPDDARRLDELLAQAR 113
>gi|318062237|ref|ZP_07980958.1| ribosome-binding factor A [Streptomyces sp. SA3_actG]
gi|318077166|ref|ZP_07984498.1| ribosome-binding factor A [Streptomyces sp. SA3_actF]
Length = 172
Score = 77.7 bits (191), Expect = 5e-13, Method: Composition-based stats.
Identities = 24/118 (20%), Positives = 52/118 (44%), Gaps = 6/118 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV-SPD 69
RA ++ + ++ + + +D + ++I++ ++ DLR ATV+ ++ D
Sbjct: 6 RARKLADRIQVVVAQTLERR-IKDPRLG--FVTITDARVTGDLREATVFYTVYGDDEERA 62
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALE 127
+AL +R +GR +RY P L F D + ++ L+ ++ E
Sbjct: 63 ASAAALESAKGVLRSEVGRQ-TGVRYTPSLAFVPDALPDTARTIDDLLDRARL-RDEE 118
>gi|296139431|ref|YP_003646674.1| ribosome-binding factor A [Tsukamurella paurometabola DSM 20162]
gi|296027565|gb|ADG78335.1| ribosome-binding factor A [Tsukamurella paurometabola DSM 20162]
Length = 157
Score = 77.7 bits (191), Expect = 5e-13, Method: Composition-based stats.
Identities = 23/113 (20%), Positives = 55/113 (48%), Gaps = 9/113 (7%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-----D 65
RA ++ + + + + I ++ +D + D +++++ ++ DL ATVY ++ +
Sbjct: 6 RAAKLAKRIATIVATAI-EHDIKDPRL--DFVTVTDARVTNDLHDATVYYTVMGPTLDVE 62
Query: 66 VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ + L +R ++G + +R+ P LRF DT ++ + AL+
Sbjct: 63 PDYESAAAGLEKARGQLRSKVG-AGTGVRFTPTLRFEPDTVPEAVATMEALLA 114
>gi|110004480|emb|CAK98817.1| putative ribosome-binding factor a protein [Spiroplasma citri]
Length = 112
Score = 77.7 bits (191), Expect = 5e-13, Method: Composition-based stats.
Identities = 28/110 (25%), Positives = 50/110 (45%), Gaps = 4/110 (3%)
Query: 12 ALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRV 71
R+ + L +I+ E +D +++ +SI V +S DL A VY S L+ +
Sbjct: 7 VERMQSLIARDLT-IIMQREIRDEILNT--LSIHAVKLSNDLSHAKVYYSSLLNKPEAEL 63
Query: 72 ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+ + IR ++ L R P+L F +D SL + + A++ K
Sbjct: 64 HNIVQNYKNKIRSKLAHKLEIYRC-PDLEFIFDRSLDNANNIEAILQNLK 112
>gi|256396841|ref|YP_003118405.1| ribosome-binding factor A [Catenulispora acidiphila DSM 44928]
gi|256363067|gb|ACU76564.1| ribosome-binding factor A [Catenulispora acidiphila DSM 44928]
Length = 152
Score = 77.7 bits (191), Expect = 5e-13, Method: Composition-based stats.
Identities = 23/119 (19%), Positives = 50/119 (42%), Gaps = 5/119 (4%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
N RA ++ + +R + + +D + ++I++V ++ DLR ATV+ ++
Sbjct: 2 ANNGTRAAKLADRIRVIVAETLKMR-VKDPRLG--FVTITDVRITGDLRDATVFYTVLGG 58
Query: 66 -VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIP 123
+AL +R +GR +++ P L F D + + L+ +
Sbjct: 59 EEERAETAAALESAKGVLRTEVGRQ-TGVKHTPSLTFIADAIPEGARNIEDLLAKAAVS 116
>gi|226366094|ref|YP_002783877.1| ribosome-binding factor A [Rhodococcus opacus B4]
gi|254789760|sp|C1B315|RBFA_RHOOB RecName: Full=Ribosome-binding factor A
gi|226244584|dbj|BAH54932.1| ribosome-binding factor A [Rhodococcus opacus B4]
Length = 162
Score = 77.7 bits (191), Expect = 5e-13, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 56/120 (46%), Gaps = 9/120 (7%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL---DVS 67
RA ++ + + + + I ++E +D ++ ++I++ ++ DL ATVY ++ +
Sbjct: 6 RARKLAKRIGTIVATAI-DHEIKDPRLA--FVTITDTKVTADLHDATVYYTVMGADLESE 62
Query: 68 PDRV--ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
PD V + L +R ++G + +R+ P L F DT + + L+ +
Sbjct: 63 PDLVSAAAGLEKAKGVLRSKVG-AGTGVRFTPTLTFVADTVPDTARHMEELLARARAADD 121
>gi|317051797|ref|YP_004112913.1| ribosome-binding factor A [Desulfurispirillum indicum S5]
gi|316946881|gb|ADU66357.1| ribosome-binding factor A [Desulfurispirillum indicum S5]
Length = 116
Score = 77.7 bits (191), Expect = 5e-13, Method: Composition-based stats.
Identities = 24/118 (20%), Positives = 51/118 (43%), Gaps = 5/118 (4%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
S R +V V L +I D +++++ V S DL +A VY +
Sbjct: 2 SIRTEKVNSLVLQTLSQIIQKEIPLD----YGLVNVNSVQTSGDLSMAKVYYGVLGSEDQ 57
Query: 69 -DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
I ++ + + ++ + + LR+++ VP+LRF +D + ++ ++ K
Sbjct: 58 VAMAIDYIDQHSRSLQHLLNQQLRHMKTVPKLRFIFDQGSEHSVRIARILDELKNKEE 115
>gi|313673258|ref|YP_004051369.1| ribosome-binding factor a [Calditerrivibrio nitroreducens DSM
19672]
gi|312940014|gb|ADR19206.1| ribosome-binding factor A [Calditerrivibrio nitroreducens DSM
19672]
Length = 116
Score = 77.3 bits (190), Expect = 6e-13, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 51/117 (43%), Gaps = 4/117 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
K + R RVGE ++ + I+ E ++ I +I+ +V ++ DL +A VYI
Sbjct: 3 KETFRDRRVGELLKEEISR-IVQYEVKNPNIHGLIIT--DVVVTKDLSLARVYIRSFDGT 59
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIP 123
+ + L+ FI + ++ VP L F D +L K+ L+ K
Sbjct: 60 DMEVLRQELDLAKNFI-YSKLKKSIKIKKVPSLSFFVDNTLDYASKIEELLKQVKQQ 115
>gi|302342328|ref|YP_003806857.1| ribosome-binding factor A [Desulfarculus baarsii DSM 2075]
gi|301638941|gb|ADK84263.1| ribosome-binding factor A [Desulfarculus baarsii DSM 2075]
Length = 132
Score = 77.3 bits (190), Expect = 6e-13, Method: Composition-based stats.
Identities = 26/108 (24%), Positives = 50/108 (46%), Gaps = 4/108 (3%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPD 69
RR RVG + + L ++L +D + ++++ V +S DL A V+ SL
Sbjct: 4 RRTRRVGNLILAELAELLLRR-VKDPRLEG--LTLTAVDVSPDLHQAKVFYSLLDPQRQP 60
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+V + F+R + LR ++ +P L +D S+ ++ L+
Sbjct: 61 QVEAGFAAAAPFLRRELAARLR-IKTLPRLEAVFDGSIVRGLAMDELI 107
>gi|15827817|ref|NP_302080.1| ribosome-binding factor A [Mycobacterium leprae TN]
gi|221230294|ref|YP_002503710.1| ribosome-binding factor A [Mycobacterium leprae Br4923]
gi|6225917|sp|Q9Z5I8|RBFA_MYCLE RecName: Full=Ribosome-binding factor A
gi|254789758|sp|B8ZRT3|RBFA_MYCLB RecName: Full=Ribosome-binding factor A
gi|4455679|emb|CAB36571.1| putative ribosome-binding factor A [Mycobacterium leprae]
gi|13093369|emb|CAC30506.1| probable ribosome-binding factor [Mycobacterium leprae]
gi|219933401|emb|CAR71650.1| probable ribosome-binding factor [Mycobacterium leprae Br4923]
Length = 164
Score = 77.3 bits (190), Expect = 6e-13, Method: Composition-based stats.
Identities = 27/112 (24%), Positives = 53/112 (47%), Gaps = 9/112 (8%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPD- 69
RA R+ + + + + I E +D + ++I +V ++ DL ATV+ ++ D
Sbjct: 6 RARRLAKRICTIVASAI-EFEIKDPGLDG--VTIVDVKVTADLHDATVFYTVMGRTLEDA 62
Query: 70 ----RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ALN +R ++G + +R+ P L F DT+ S ++ L+
Sbjct: 63 PDYTAATAALNRAKGTLRSKVG-AGTGVRFTPTLTFIRDTTSDSVARMEELL 113
>gi|283782787|ref|YP_003373541.1| ribosome-binding factor A [Gardnerella vaginalis 409-05]
gi|298253045|ref|ZP_06976837.1| ribosome-binding factor A [Gardnerella vaginalis 5-1]
gi|283442027|gb|ADB14493.1| ribosome-binding factor A [Gardnerella vaginalis 409-05]
gi|297532440|gb|EFH71326.1| ribosome-binding factor A [Gardnerella vaginalis 5-1]
Length = 184
Score = 77.3 bits (190), Expect = 7e-13, Method: Composition-based stats.
Identities = 23/117 (19%), Positives = 51/117 (43%), Gaps = 9/117 (7%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
+ RA R+ ++ + + + D+ ++ ++I+EV ++ DL++A VY +
Sbjct: 2 AGTNPRAARIAALIQRVIASN-MESHLHDKRLAS--VTITEVRVTNDLQIAKVYWTQLGH 58
Query: 66 VSPDR-----VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
++ AL +R +G LR P+L+F YD ++ ++
Sbjct: 59 EGKEQGERQRAAQALQQAHGRLRSLVGAK-AGLRLTPQLQFIYDEVPSEAHEIEDIL 114
>gi|295836226|ref|ZP_06823159.1| ribosome-binding factor A [Streptomyces sp. SPB74]
gi|197699260|gb|EDY46193.1| ribosome-binding factor A [Streptomyces sp. SPB74]
Length = 161
Score = 76.9 bits (189), Expect = 8e-13, Method: Composition-based stats.
Identities = 24/118 (20%), Positives = 52/118 (44%), Gaps = 6/118 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV-SPD 69
RA ++ + ++ + + +D + ++I++ ++ DLR ATV+ ++ D
Sbjct: 6 RARKLADRIQVVVAQTLERR-IKDPRLG--FVTITDARVTGDLREATVFYTVYGDDEERA 62
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALE 127
+AL +R +GR +RY P L F D + ++ L+ ++ E
Sbjct: 63 ASAAALESAKGVLRSEVGRQ-TGVRYTPSLAFVPDALPDTARTIDDLLDRARL-RDEE 118
>gi|315604470|ref|ZP_07879536.1| ribosome-binding factor A [Actinomyces sp. oral taxon 180 str.
F0310]
gi|315314176|gb|EFU62227.1| ribosome-binding factor A [Actinomyces sp. oral taxon 180 str.
F0310]
Length = 158
Score = 76.9 bits (189), Expect = 9e-13, Method: Composition-based stats.
Identities = 24/95 (25%), Positives = 45/95 (47%), Gaps = 5/95 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP-D 69
R +V E + + +I +D + +++I++V ++ DL+ A+V+ ++ D
Sbjct: 16 RVRKVQERILQTVASMIGRQ-VKDPRLE--LVTITDVRVTGDLQHASVFYTVLGDDEQRS 72
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYD 104
R A R R+G++L LR P L F D
Sbjct: 73 RAARAFASAQGLFRSRVGKAL-GLRLTPSLEFILD 106
>gi|297242936|ref|ZP_06926874.1| ribosome-binding factor A [Gardnerella vaginalis AMD]
gi|296889147|gb|EFH27881.1| ribosome-binding factor A [Gardnerella vaginalis AMD]
Length = 180
Score = 76.5 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 23/117 (19%), Positives = 51/117 (43%), Gaps = 9/117 (7%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
+ RA R+ ++ + + + D+ ++ ++I+EV ++ DL++A VY +
Sbjct: 2 AGTNPRAARIAALIQRVIASN-MESHLHDKRLAS--VTITEVRVTNDLQIAKVYWTQLGH 58
Query: 66 VSPDR-----VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
++ AL +R +G LR P+L+F YD ++ ++
Sbjct: 59 EGKEQGERQRAAQALQQAHGRLRSLVGAK-AGLRLTPQLQFIYDEVPSEAHEIEDIL 114
>gi|239982640|ref|ZP_04705164.1| ribosome-binding factor A [Streptomyces albus J1074]
gi|291454480|ref|ZP_06593870.1| ribosome-binding factor A [Streptomyces albus J1074]
gi|291357429|gb|EFE84331.1| ribosome-binding factor A [Streptomyces albus J1074]
Length = 153
Score = 76.5 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 22/108 (20%), Positives = 49/108 (45%), Gaps = 5/108 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV-SPD 69
RA ++ + ++ + + +D + ++I++ ++ DLR ATV+ ++ D
Sbjct: 6 RARKLADRIQVVVAETLDRR-IKDPRLG--FVTITDARVTGDLREATVFYTVYGDDEERA 62
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+AL +R +GR +R+ P L F D + ++ L+
Sbjct: 63 ASAAALESAKGVLRSEVGRQ-TGVRFTPTLAFVPDALPDNARTIDDLL 109
>gi|302832513|ref|XP_002947821.1| hypothetical protein VOLCADRAFT_88099 [Volvox carteri f.
nagariensis]
gi|300267169|gb|EFJ51354.1| hypothetical protein VOLCADRAFT_88099 [Volvox carteri f.
nagariensis]
Length = 2634
Score = 76.5 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 36 LISRDVISISEVCMSVDLRVATVYISLPLDVSPDRV-ISALNCNIKFIRGRIGRSLRNLR 94
+ V SI+ +S DL+V V++S+ D RV + L ++R IG+ +R LR
Sbjct: 102 DMLSAVASITNTYVSNDLQVVKVFVSVYSDDYGKRVAMQNLARLEPYVRVLIGQRVR-LR 160
Query: 95 YVPELRFRYDTSLQSYWKLNALMCLPKIPV 124
PE+RF YD S + + ++ ++
Sbjct: 161 RTPEVRFVYDDSEEEADLVVRVLGRAEVER 190
>gi|294786398|ref|ZP_06751652.1| ribosome-binding factor A [Parascardovia denticolens F0305]
gi|315225960|ref|ZP_07867748.1| ribosome-binding factor A [Parascardovia denticolens DSM 10105]
gi|294485231|gb|EFG32865.1| ribosome-binding factor A [Parascardovia denticolens F0305]
gi|315120092|gb|EFT83224.1| ribosome-binding factor A [Parascardovia denticolens DSM 10105]
Length = 169
Score = 76.5 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 26/127 (20%), Positives = 53/127 (41%), Gaps = 10/127 (7%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP-- 63
K + R+ R+ ++ + + + D + R ++++EV ++ D+++A +Y +
Sbjct: 2 AKVNPRSARISGVIQRVVASALA-TDLHDPRLER--VTVTEVRVTNDMQLARIYWTQLGE 58
Query: 64 ---LDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
+ R ALN +R +GRS LR P+L F +D + +M
Sbjct: 59 EGREEGERKRAAQALNQARGHLRSLVGRS-TGLRLTPQLEFIFDQVPSRATTVEDIMAAA 117
Query: 121 KIPVALE 127
E
Sbjct: 118 H-KRDQE 123
>gi|331698433|ref|YP_004334672.1| ribosome-binding factor A [Pseudonocardia dioxanivorans CB1190]
gi|326953122|gb|AEA26819.1| Ribosome-binding factor A [Pseudonocardia dioxanivorans CB1190]
Length = 149
Score = 76.1 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 23/116 (19%), Positives = 52/116 (44%), Gaps = 9/116 (7%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
RA R+ + + + + +E +D ++ +++I++ ++ DLR ATVY ++ +
Sbjct: 6 RARRLAKRISQIVADAL-EHEVKDPRLA--MVTITDARVTGDLREATVYYTVLGRTVDEE 62
Query: 71 -----VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+AL +R +G+ +R+ P L F D ++ L+ +
Sbjct: 63 PDTAGAAAALASATGVLRTMVGQQ-TGIRHTPSLAFVPDEVPDEARRMEELLARTR 117
>gi|171920984|ref|ZP_02932110.1| ribosome-binding factor A [Ureaplasma urealyticum serovar 13 str.
ATCC 33698]
gi|185179150|ref|ZP_02964865.1| ribosome-binding factor A [Ureaplasma urealyticum serovar 5 str.
ATCC 27817]
gi|188024214|ref|ZP_02996921.1| ribosome-binding factor A [Ureaplasma urealyticum serovar 7 str.
ATCC 27819]
gi|188518619|ref|ZP_03004067.1| ribosome-binding factor A [Ureaplasma urealyticum serovar 11 str.
ATCC 33695]
gi|188524497|ref|ZP_03004497.1| ribosome-binding factor A [Ureaplasma urealyticum serovar 12 str.
ATCC 33696]
gi|198273734|ref|ZP_03206269.1| ribosome-binding factor A [Ureaplasma urealyticum serovar 4 str.
ATCC 27816]
gi|209554588|ref|YP_002284720.1| ribosome-binding factor A [Ureaplasma urealyticum serovar 10 str.
ATCC 33699]
gi|225550630|ref|ZP_03771579.1| ribosome-binding factor A [Ureaplasma urealyticum serovar 2 str.
ATCC 27814]
gi|225551300|ref|ZP_03772246.1| ribosome-binding factor A [Ureaplasma urealyticum serovar 8 str.
ATCC 27618]
gi|226723616|sp|B5ZBD0|RBFA_UREU1 RecName: Full=Ribosome-binding factor A
gi|171903014|gb|EDT49303.1| ribosome-binding factor A [Ureaplasma urealyticum serovar 13 str.
ATCC 33698]
gi|184208930|gb|EDU05973.1| ribosome-binding factor A [Ureaplasma urealyticum serovar 5 str.
ATCC 27817]
gi|188018868|gb|EDU56908.1| ribosome-binding factor A [Ureaplasma urealyticum serovar 7 str.
ATCC 27819]
gi|188997854|gb|EDU66951.1| ribosome-binding factor A [Ureaplasma urealyticum serovar 11 str.
ATCC 33695]
gi|195659670|gb|EDX53050.1| ribosome-binding factor A [Ureaplasma urealyticum serovar 12 str.
ATCC 33696]
gi|198249762|gb|EDY74543.1| ribosome-binding factor A [Ureaplasma urealyticum serovar 4 str.
ATCC 27816]
gi|209542089|gb|ACI60318.1| ribosome-binding factor A [Ureaplasma urealyticum serovar 10 str.
ATCC 33699]
gi|225379115|gb|EEH01480.1| ribosome-binding factor A [Ureaplasma urealyticum serovar 8 str.
ATCC 27618]
gi|225379784|gb|EEH02146.1| ribosome-binding factor A [Ureaplasma urealyticum serovar 2 str.
ATCC 27814]
Length = 116
Score = 76.1 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 24/113 (21%), Positives = 50/113 (44%), Gaps = 4/113 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
R R+ ++ + + N E D++ + ++ V +S DL VA +++ S +
Sbjct: 6 RVARLESLIKDVINNALAN-EINDKI--AKLARVTAVRLSNDLSVAKIFLDAHKRESMPK 62
Query: 71 VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIP 123
V+ +N +R ++ + + VPELRF D ++ ++ L K
Sbjct: 63 VLENVNKVSGLLRSKLAAEWTSYK-VPELRFVIDETIDYANHIDELFKKIKQQ 114
>gi|238809626|dbj|BAH69416.1| hypothetical protein [Mycoplasma fermentans PG18]
Length = 335
Score = 76.1 bits (187), Expect = 2e-12, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 6/116 (5%)
Query: 12 ALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRV 71
LR ++R+ L +I N+ +I+ ++ + +S DL +Y+S + R
Sbjct: 17 TLRRESQIRTLLAEIITNDLTNTNIINPTLV---DCELSGDLSHVKIYMSF--SENEKRG 71
Query: 72 ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALE 127
+ AL +IR + +SL N R VPEL F D + ++ ++ K E
Sbjct: 72 LEALQNASGYIRTILAKSL-NWRKVPELHFYIDEVSKKCLSIDRILYDIKDEKNFE 126
>gi|239944692|ref|ZP_04696629.1| ribosome-binding factor A [Streptomyces roseosporus NRRL 15998]
gi|239991155|ref|ZP_04711819.1| ribosome-binding factor A [Streptomyces roseosporus NRRL 11379]
gi|291448152|ref|ZP_06587542.1| ribosome-binding factor A [Streptomyces roseosporus NRRL 15998]
gi|291351099|gb|EFE78003.1| ribosome-binding factor A [Streptomyces roseosporus NRRL 15998]
Length = 158
Score = 76.1 bits (187), Expect = 2e-12, Method: Composition-based stats.
Identities = 23/118 (19%), Positives = 50/118 (42%), Gaps = 6/118 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV-SPD 69
RA ++ + ++ + + +D + ++I++ ++ DLR ATV+ ++ D
Sbjct: 6 RARKLADRIQVVVAETLDRR-IKDPRLG--FVTITDARVTGDLREATVFYTVYGDDEERA 62
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALE 127
+AL +R +GR +R+ P L F D + + L+ + E
Sbjct: 63 ASAAALESAKGVLRSEVGRQ-TGVRFTPTLAFVPDALPDNARTIEDLLDKAR-AKDAE 118
>gi|183220913|ref|YP_001838909.1| ribosome-binding factor A [Leptospira biflexa serovar Patoc strain
'Patoc 1 (Paris)']
gi|189911009|ref|YP_001962564.1| ribosome-binding factor A [Leptospira biflexa serovar Patoc strain
'Patoc 1 (Ames)']
gi|238687789|sp|B0SH19|RBFA_LEPBA RecName: Full=Ribosome-binding factor A
gi|238687818|sp|B0SQH5|RBFA_LEPBP RecName: Full=Ribosome-binding factor A
gi|167775685|gb|ABZ93986.1| Ribosome-binding factor A [Leptospira biflexa serovar Patoc strain
'Patoc 1 (Ames)']
gi|167779335|gb|ABZ97633.1| Ribosome-binding factor A [Leptospira biflexa serovar Patoc strain
'Patoc 1 (Paris)']
Length = 149
Score = 75.8 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 24/110 (21%), Positives = 47/110 (42%), Gaps = 4/110 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP-LDVSPD 69
R ++ E+ + IL + +D + S + +S DL+ A VY + +
Sbjct: 5 RMKKLESEIIRQISTAILEGKVKDPRVFLP--SFHRIEISEDLKYAKVYFTALCNNNERK 62
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
++ L F+ +G++LR L P+ F +D S ++N L+
Sbjct: 63 KLTQGLVSCAGFLSSFVGKNLR-LHTNPKFTFVWDNSYIKSLEVNRLIDD 111
>gi|182435602|ref|YP_001823321.1| ribosome-binding factor A [Streptomyces griseus subsp. griseus NBRC
13350]
gi|326776236|ref|ZP_08235501.1| Ribosome-binding factor A [Streptomyces cf. griseus XylebKG-1]
gi|238689004|sp|B1VYN3|RBFA_STRGG RecName: Full=Ribosome-binding factor A
gi|178464118|dbj|BAG18638.1| putative ribosome-binding factor [Streptomyces griseus subsp.
griseus NBRC 13350]
gi|326656569|gb|EGE41415.1| Ribosome-binding factor A [Streptomyces cf. griseus XylebKG-1]
Length = 158
Score = 75.8 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 23/118 (19%), Positives = 50/118 (42%), Gaps = 6/118 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV-SPD 69
RA ++ + ++ + + +D + ++I++ ++ DLR ATV+ ++ D
Sbjct: 6 RARKLADRIQVVVAETLDRR-IKDPRLG--FVTITDARVTGDLREATVFYTVYGDDEERA 62
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALE 127
+AL +R +GR +R+ P L F D + + L+ + E
Sbjct: 63 ASAAALESAKGVLRSEVGRQ-TGVRFTPTLAFVPDALPDNARTIEDLLDKAR-AKDAE 118
>gi|296269046|ref|YP_003651678.1| ribosome-binding factor A [Thermobispora bispora DSM 43833]
gi|296091833|gb|ADG87785.1| ribosome-binding factor A [Thermobispora bispora DSM 43833]
Length = 164
Score = 75.8 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 22/110 (20%), Positives = 46/110 (41%), Gaps = 6/110 (5%)
Query: 19 VRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD-VSPDRVISALNC 77
++ + ++ +D + +++++ ++ DL ATVY ++ +AL
Sbjct: 14 IKQVVAEMLERR-IKDPRLG--FVTVTDARITADLSAATVYYTVFGSEEERAATAAALES 70
Query: 78 NIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALE 127
IR +GR LR+ P + F +D S L+ L + + E
Sbjct: 71 AKGLIRSEVGRR-TGLRHTPTIAFVHDPLPASARHLDDLFAIAR-ARDAE 118
>gi|239618462|ref|YP_002941784.1| ribosome-binding factor A [Kosmotoga olearia TBF 19.5.1]
gi|259552010|sp|C5CI78|RBFA_KOSOT RecName: Full=Ribosome-binding factor A
gi|239507293|gb|ACR80780.1| ribosome-binding factor A [Kosmotoga olearia TBF 19.5.1]
Length = 125
Score = 75.4 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 23/108 (21%), Positives = 52/108 (48%), Gaps = 3/108 (2%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
R + E++ L + N + I ++SI + +S D R A +++S L D
Sbjct: 6 RKAMLESEIQKVLTEAL-RNFKGESEIDPTLVSIVRIELSKDKRYANIFVSYLGNDEEKK 64
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ + + N + R + +++R + PELRF D +++ +++ ++
Sbjct: 65 KAVEFMEENKGYFRTAVAKNIRLFK-APELRFHEDIGIEASLRISKIL 111
>gi|308234654|ref|ZP_07665391.1| ribosome-binding factor A [Gardnerella vaginalis ATCC 14018]
gi|311114228|ref|YP_003985449.1| ribosome-binding factor A [Gardnerella vaginalis ATCC 14019]
gi|310945722|gb|ADP38426.1| ribosome-binding factor A [Gardnerella vaginalis ATCC 14019]
Length = 193
Score = 75.4 bits (185), Expect = 3e-12, Method: Composition-based stats.
Identities = 24/127 (18%), Positives = 52/127 (40%), Gaps = 10/127 (7%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
+ RA R+ + + + D+ ++ ++I+EV ++ DL++A VY +
Sbjct: 2 AGTNPRAARIAALIHRVIASN-MEAHLHDKRLAN--VTITEVRVTNDLQIAKVYWTQLGT 58
Query: 66 VSPDR-----VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
V ++ AL +R +G LR P+++F YD ++ ++
Sbjct: 59 VGKEQGERQRAAQALQQAKGRLRTLVGAK-AGLRLTPQIQFVYDEVPSEAHEIEDILVAA 117
Query: 121 KIPVALE 127
+ E
Sbjct: 118 R-KRDEE 123
>gi|225849950|ref|YP_002730184.1| ribosome-binding factor A [Persephonella marina EX-H1]
gi|225646632|gb|ACO04818.1| ribosome-binding factor A [Persephonella marina EX-H1]
Length = 100
Score = 75.4 bits (185), Expect = 3e-12, Method: Composition-based stats.
Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 6/97 (6%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
K S R +V E++ L + L + +++++ V + DL A VY+S +
Sbjct: 2 KRSHRMEKVNNELKRVLSEIFLTEI---PVQQDNIVTVLRVEATSDLNEAKVYVSALKNG 58
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRY 103
V+ LN +IR +G ++ +R VP+ +F
Sbjct: 59 --QDVVEQLNQKSGYIRHLVGNRIK-IRKVPKFKFIL 92
>gi|225872714|ref|YP_002754171.1| ribosome-binding factor A [Acidobacterium capsulatum ATCC 51196]
gi|225792059|gb|ACO32149.1| ribosome-binding factor A [Acidobacterium capsulatum ATCC 51196]
Length = 123
Score = 75.0 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 25/125 (20%), Positives = 53/125 (42%), Gaps = 6/125 (4%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
M + + RV E +R + ++ E D IS +S+V ++ + A V++
Sbjct: 1 MPEQRARKYH-QDRVAETLREEIGAML-EGELSDPRIS--FAHVSQVILNPGGKSAQVWV 56
Query: 61 SL-PLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
++ + + ++ + L +IR + R VPEL F D S + +++ L+
Sbjct: 57 AVDGGNEAEEQTVQGLMAARGYIRHELLERTGK-RRVPELTFHVDRSDRMKARIDELLGR 115
Query: 120 PKIPV 124
+
Sbjct: 116 SQKKR 120
>gi|299469794|emb|CBN76648.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 269
Score = 75.0 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 35/124 (28%), Positives = 59/124 (47%), Gaps = 11/124 (8%)
Query: 4 KNPKNSRRALRVGEEVRSALMWVIL-------NNEFQDRLISRDVISISEVCMSVDLRVA 56
++ S+R RV + + L ++ ++ D + R I++ +V MS DLR A
Sbjct: 80 RSTTESKRQARVSQLLTGELAKILRLGHGIKTKDKIDDDV--RCRIAVVDVDMSPDLRSA 137
Query: 57 TVYISLPLDV-SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNA 115
V+IS+ DV + N K IR + L+ ++ VPEL F+ DT + + L A
Sbjct: 138 KVFISVYGDVLEKREAYAWCVKNTKAIRMALCAELKGMKRVPELFFK-DTDISAAVDLMA 196
Query: 116 LMCL 119
L+
Sbjct: 197 LIDR 200
>gi|295112226|emb|CBL28976.1| ribosome-binding factor A [Synergistetes bacterium SGP1]
Length = 129
Score = 75.0 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 21/106 (19%), Positives = 47/106 (44%), Gaps = 4/106 (3%)
Query: 14 RVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVIS 73
R+ ++++ + ++L + + + +I+ V S DL VA V+ + +
Sbjct: 3 RINKQLQREIS-LLLESRIKKEAVKDAIIT--GVDCSRDLDVAKVFFTALTPERRRELRE 59
Query: 74 ALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
L +R +G+ L+ LR +P L F D S +++ ++
Sbjct: 60 ELASVRGALRTLLGQVLK-LRRIPSLDFVPDESADYGERIDGILNR 104
>gi|13357881|ref|NP_078155.1| ribosome-binding factor A [Ureaplasma parvum serovar 3 str. ATCC
700970]
gi|170762143|ref|YP_001752403.1| ribosome-binding factor A [Ureaplasma parvum serovar 3 str. ATCC
27815]
gi|171920191|ref|ZP_02931575.1| ribosome-binding factor A [Ureaplasma parvum serovar 1 str. ATCC
27813]
gi|183508773|ref|ZP_02958240.1| ribosome-binding factor A [Ureaplasma parvum serovar 14 str. ATCC
33697]
gi|186701715|ref|ZP_02971407.1| ribosome-binding factor A [Ureaplasma parvum serovar 6 str. ATCC
27818]
gi|20978664|sp|Q9PQH0|RBFA_UREPA RecName: Full=Ribosome-binding factor A
gi|189039566|sp|B1AIV9|RBFA_UREP2 RecName: Full=Ribosome-binding factor A
gi|11357047|pir||C82906 ribosome binding factor A UU321 [imported] - Ureaplasma urealyticum
gi|6899298|gb|AAF30730.1|AE002129_6 ribosome binding factor A [Ureaplasma parvum serovar 3 str. ATCC
700970]
gi|168827720|gb|ACA32982.1| ribosome-binding factor A [Ureaplasma parvum serovar 3 str. ATCC
27815]
gi|171902569|gb|EDT48858.1| ribosome-binding factor A [Ureaplasma parvum serovar 1 str. ATCC
27813]
gi|182675715|gb|EDT87620.1| ribosome-binding factor A [Ureaplasma parvum serovar 14 str. ATCC
33697]
gi|186700982|gb|EDU19264.1| ribosome-binding factor A [Ureaplasma parvum serovar 6 str. ATCC
27818]
Length = 116
Score = 75.0 bits (184), Expect = 4e-12, Method: Composition-based stats.
Identities = 24/113 (21%), Positives = 50/113 (44%), Gaps = 4/113 (3%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
R R+ ++ + + N E D++ + ++ V +S DL VA +++ S +
Sbjct: 6 RVARLESLIKDVINNALAN-EINDKI--AKLARVTAVRLSNDLSVAKIFLDAHKRESMLK 62
Query: 71 VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIP 123
V+ +N +R ++ + + VPELRF D ++ ++ L K
Sbjct: 63 VLENVNKVSGLLRSKLAAEWTSYK-VPELRFVIDETIDYANHIDELFKKIKQQ 114
>gi|257063655|ref|YP_003143327.1| ribosome-binding factor A [Slackia heliotrinireducens DSM 20476]
gi|256791308|gb|ACV21978.1| ribosome-binding factor A [Slackia heliotrinireducens DSM 20476]
Length = 138
Score = 74.6 bits (183), Expect = 4e-12, Method: Composition-based stats.
Identities = 27/112 (24%), Positives = 44/112 (39%), Gaps = 5/112 (4%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
K S + E+ R L ++L E D +S +++I+ +S D V+ +
Sbjct: 2 KQSNANRKTNEQAREILANILLF-EVSDPRLS--MVTITGCEVSFDRSYCNVFYTAEPGT 58
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
IR +GRSL R PELRF D S+ ++ +
Sbjct: 59 YEGAAAGF-EAAKGRIRSLMGRSLSW-RVTPELRFLLDPSVDEAERIARALA 108
>gi|302542138|ref|ZP_07294480.1| ribosome-binding factor A [Streptomyces hygroscopicus ATCC 53653]
gi|302459756|gb|EFL22849.1| ribosome-binding factor A [Streptomyces himastatinicus ATCC 53653]
Length = 165
Score = 73.8 bits (181), Expect = 7e-12, Method: Composition-based stats.
Identities = 22/104 (21%), Positives = 46/104 (44%), Gaps = 5/104 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV-SPD 69
RA ++ + +R + + +D + ++I++ ++ DLR ATV+ ++ D
Sbjct: 6 RARKLADRIRVVVAETLQRR-IKDPRLGY--VTITDTRITGDLREATVFYTVYGDDEERA 62
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKL 113
+AL +R +GR +R+ P L F D + +
Sbjct: 63 ASAAALESAKGVLRSEVGRQ-TGVRFTPTLTFVPDALPDNARTI 105
>gi|325003070|ref|ZP_08124182.1| ribosome-binding factor A [Pseudonocardia sp. P1]
Length = 148
Score = 73.8 bits (181), Expect = 7e-12, Method: Composition-based stats.
Identities = 24/116 (20%), Positives = 53/116 (45%), Gaps = 9/116 (7%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
RA ++ + + + + +E +D +S +++I++ ++ DLR ATVY ++ +
Sbjct: 6 RARKLAKRISQIVAEAL-EHEVKDPRLS--MVTITDTRVTGDLREATVYYTVMGASLEEA 62
Query: 71 -----VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+AL +R R+G+ +R+ P L F D ++ L+ +
Sbjct: 63 PDTAGAAAALQSAAGVLRSRVGQQ-TGVRHTPSLAFVLDQVPDEARRMEELLAQTR 117
>gi|322436496|ref|YP_004218708.1| ribosome-binding factor A [Acidobacterium sp. MP5ACTX9]
gi|321164223|gb|ADW69928.1| ribosome-binding factor A [Acidobacterium sp. MP5ACTX9]
Length = 142
Score = 73.8 bits (181), Expect = 7e-12, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 52/120 (43%), Gaps = 6/120 (5%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
M + R RV + + ++ E D I V ++EV ++ + A V++
Sbjct: 1 MPEHRARTYHR-NRVAQSFSEEIGAML-EGELSDPRIFPSV--VTEVVLAPGGKSARVFV 56
Query: 61 SLPLDVSPDR-VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
++ + ++AL FIR +I + +R+VPEL F D S + ++ L+
Sbjct: 57 AVTGGEEEEASTLAALTTARAFIRSQIRERM-GVRHVPELSFAIDRSEKMTGRMEELLDR 115
>gi|269123539|ref|YP_003306116.1| ribosome-binding factor A [Streptobacillus moniliformis DSM 12112]
gi|268314865|gb|ACZ01239.1| ribosome-binding factor A [Streptobacillus moniliformis DSM 12112]
Length = 124
Score = 73.8 bits (181), Expect = 8e-12, Method: Composition-based stats.
Identities = 29/111 (26%), Positives = 61/111 (54%), Gaps = 6/111 (5%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP---LDV 66
RR + +E+ + IL E ++ I R+++++ V +S D R A V +S+ ++
Sbjct: 4 RRKRGLEKEISRIIGTAIL-LEVKNEKI-RNLVTVKSVNLSPDARYADVIMSILDYKQNI 61
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ ++++ LN F R ++G +L +RY PE+R D S++ K++ ++
Sbjct: 62 NKEKLLEELNKLKGFFRKKVGENL-EIRYTPEIRIHLDDSVEYSVKISKIL 111
>gi|237785724|ref|YP_002906429.1| Ribosome-binding factor A [Corynebacterium kroppenstedtii DSM
44385]
gi|259551958|sp|C4LJ81|RBFA_CORK4 RecName: Full=Ribosome-binding factor A
gi|237758636|gb|ACR17886.1| Ribosome-binding factor A [Corynebacterium kroppenstedtii DSM
44385]
Length = 155
Score = 73.8 bits (181), Expect = 8e-12, Method: Composition-based stats.
Identities = 22/105 (20%), Positives = 49/105 (46%), Gaps = 9/105 (8%)
Query: 28 LNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-----DVSPDRVISALNCNIKFI 82
+ + +DR + +++I++ ++ DL ATV+ ++ + ++ AL+ +
Sbjct: 22 IEHSVKDRRLE--LVTITDTQLTGDLHDATVFYTVRGRTLDEEPDREQAAEALHRARGQL 79
Query: 83 RGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALE 127
R +G L +R+ P L F DT ++ +L L+ + E
Sbjct: 80 RKAVGDQL-GVRFTPTLTFTLDTVPETSARLEELLAQAR-QRDQE 122
>gi|295105783|emb|CBL03326.1| ribosome-binding factor A [Gordonibacter pamelaeae 7-10-1-b]
Length = 366
Score = 73.1 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 7/98 (7%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
+S R +V E+ R + ++L E D + +++I+ +S D V V+ +
Sbjct: 4 GSSNR--KVNEQAREVIASILLF-EISDPRLE--LVTITGCEVSYDRSVCNVFYTTEP-E 57
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYD 104
D V +A IR + R L R PELRF D
Sbjct: 58 RYDDVAAAFQKAAGRIRSLMARKLSW-RVAPELRFLLD 94
>gi|291320731|ref|YP_003515996.1| ribosome binding factor A [Mycoplasma agalactiae]
gi|290753067|emb|CBH41043.1| Ribosome binding factor A [Mycoplasma agalactiae]
Length = 112
Score = 73.1 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 25/115 (21%), Positives = 55/115 (47%), Gaps = 6/115 (5%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
K S LR ++++ + +I N E + I ++++V +S DL V+++
Sbjct: 2 KKSISVLRKESQIKNFISTIITN-ELTNANIYNP--TVTDVVLSTDLSHVKVFLAF--SS 56
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+ + A+ +IR + ++L N R +PEL F D + ++++ ++ K
Sbjct: 57 KENDGLDAVKNASGYIRKMLSKTL-NWRKIPELHFYIDEVEKKAFEIDQILNSLK 110
>gi|217077837|ref|YP_002335555.1| ribosome-binding factor A [Thermosipho africanus TCF52B]
gi|226736652|sp|B7IDY7|RBFA_THEAB RecName: Full=Ribosome-binding factor A
gi|217037692|gb|ACJ76214.1| ribosome-binding factor A [Thermosipho africanus TCF52B]
Length = 126
Score = 72.7 bits (178), Expect = 2e-11, Method: Composition-based stats.
Identities = 26/110 (23%), Positives = 51/110 (46%), Gaps = 6/110 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLIS--RDVISISEVCMSVDLRVATVYIS-LPLDVS 67
R ++ +R + I + ++ +D I IS V +S D R A V++S +
Sbjct: 6 RNKKIEAYIRELIAQAIQ--KIKEPEFEYLKDYIVISRVLISKDRRFADVFVSVIGNSEQ 63
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ + L + R + +++R L PELRF+ D ++ ++N L+
Sbjct: 64 RKKAVELLEKYKGYFRTFVAKNVR-LYTAPELRFKEDKGIEESVRINKLL 112
>gi|26553566|ref|NP_757500.1| ribosome-binding factor A [Mycoplasma penetrans HF-2]
gi|29427771|sp|Q8EWT9|RBFA_MYCPE RecName: Full=Ribosome-binding factor A
gi|26453572|dbj|BAC43904.1| ribosome binding factor A [Mycoplasma penetrans HF-2]
Length = 116
Score = 72.7 bits (178), Expect = 2e-11, Method: Composition-based stats.
Identities = 27/107 (25%), Positives = 50/107 (46%), Gaps = 8/107 (7%)
Query: 15 VGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISA 74
+ + + A+ + D LI + ++ V +S D +A VYIS D+++
Sbjct: 16 IKDLISHAITTL-----VYDDLIKQA--TVHYVTLSKDKSIAKVYISCYDKTIIDKILKK 68
Query: 75 LNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+N F R + ++L NLR P + F D S+ ++N+L+ K
Sbjct: 69 INGASGFFRTILAKNL-NLRKAPAIVFLNDESIDKIDEINSLLEQIK 114
>gi|299139244|ref|ZP_07032420.1| ribosome-binding factor A [Acidobacterium sp. MP5ACTX8]
gi|298598924|gb|EFI55086.1| ribosome-binding factor A [Acidobacterium sp. MP5ACTX8]
Length = 137
Score = 72.7 bits (178), Expect = 2e-11, Method: Composition-based stats.
Identities = 23/118 (19%), Positives = 52/118 (44%), Gaps = 6/118 (5%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
M + ++ R RV + ++ E D I+ ++EV ++ + V+I
Sbjct: 1 MPEQRARDYHR-GRVVNTFAEEITAML-EGELSDPRIAPCH--VTEVVLAPGGKSCRVFI 56
Query: 61 SLPLDVSPD-RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
++ + + ++ L +IR I + +R+VPE+ F D S + +++ L+
Sbjct: 57 AVTGNEKDEADTLAGLMTARGYIRTEIRDRM-GVRHVPEITFAIDRSEKINARMDELL 113
>gi|256827230|ref|YP_003151189.1| ribosome-binding factor A [Cryptobacterium curtum DSM 15641]
gi|256583373|gb|ACU94507.1| ribosome-binding factor A [Cryptobacterium curtum DSM 15641]
Length = 118
Score = 72.3 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 24/122 (19%), Positives = 49/122 (40%), Gaps = 6/122 (4%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
K S + +V ++ R + +L E D ++ +++I++ +S D V+ +
Sbjct: 2 KQSSSSRKVNQQAREVIANALLF-EISDPRLA--LVTITDCEVSFDRSACNVFYTC-DAQ 57
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVAL 126
S V A IR + + L R P+LRF D S+ + ++ + +
Sbjct: 58 SYTEVAQAFAAARGRIRSIMAQQLSW-RVAPDLRFIRDESVDAAQRIEEALKR-EAERDA 115
Query: 127 EK 128
Sbjct: 116 SH 117
>gi|227488655|ref|ZP_03918971.1| ribosome-binding factor A [Corynebacterium glucuronolyticum ATCC
51867]
gi|227543259|ref|ZP_03973308.1| ribosome-binding factor A [Corynebacterium glucuronolyticum ATCC
51866]
gi|227091549|gb|EEI26861.1| ribosome-binding factor A [Corynebacterium glucuronolyticum ATCC
51867]
gi|227181068|gb|EEI62040.1| ribosome-binding factor A [Corynebacterium glucuronolyticum ATCC
51866]
Length = 160
Score = 72.3 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 32/131 (24%), Positives = 61/131 (46%), Gaps = 10/131 (7%)
Query: 2 KNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS 61
K + RA R+ + +++ + + +E +D + I++++ ++ DL ATVY +
Sbjct: 17 KEDFMADKVRAGRMAKRIQTIVATAL-EHEIKD--WHLEYITVTDCSLTGDLHDATVYYT 73
Query: 62 L---PLDVSPDRVISA--LNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNAL 116
+ LD PD +A LN +R +G L ++R+ P L F DT +S + L
Sbjct: 74 VRGKTLDEEPDYAAAAESLNRWKGRLRKIVGDQL-SVRFTPTLSFELDTVPESRAHMEDL 132
Query: 117 MCLPKIPVALE 127
+ + E
Sbjct: 133 LARAR-ARDEE 142
>gi|320094039|ref|ZP_08025862.1| ribosome-binding factor A [Actinomyces sp. oral taxon 178 str.
F0338]
gi|319979028|gb|EFW10548.1| ribosome-binding factor A [Actinomyces sp. oral taxon 178 str.
F0338]
Length = 149
Score = 72.3 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 21/95 (22%), Positives = 43/95 (45%), Gaps = 5/95 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP-LDVSPD 69
R +V E V+ + +I +D + ++I++ ++ DL+ A+V+ ++ D +
Sbjct: 6 RVRKVQERVQQTVASMIGRR-VKDPRLE--FVTITDARVTGDLQHASVFYTVYGDDAARA 62
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYD 104
A R ++G+ + LR P L F D
Sbjct: 63 GAARAFESARGLFRSQVGK-VLGLRLTPTLEFIPD 96
>gi|284931124|gb|ADC31062.1| Ribosome-binding factor A [Mycoplasma gallisepticum str. F]
Length = 119
Score = 72.3 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 27/110 (24%), Positives = 48/110 (43%), Gaps = 4/110 (3%)
Query: 12 ALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRV 71
LR+ + L I E + LI VI+ + +S D VA +YI + + +
Sbjct: 6 TLRLEATIHKLLSQAIS-TEINNSLIKTSVIT--AIKLSDDKSVAKIYIDCLIPNNIAKT 62
Query: 72 ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+ A R + + L +R +P+L F YD S+ K++ ++ K
Sbjct: 63 LQAYKDATGVFRHVLSKHL-TIRSIPQLVFYYDDSISKGAKIDQILAEIK 111
>gi|148377991|ref|YP_001256867.1| ribosome-binding factor A [Mycoplasma agalactiae PG2]
gi|238686671|sp|A5IZH0|RBFA_MYCAP RecName: Full=Ribosome-binding factor A
gi|148292037|emb|CAL59429.1| Ribosome binding factor A [Mycoplasma agalactiae PG2]
Length = 113
Score = 71.9 bits (176), Expect = 3e-11, Method: Composition-based stats.
Identities = 27/115 (23%), Positives = 56/115 (48%), Gaps = 6/115 (5%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
K S LR ++++ + +I N E + I ++++V +S DL V+++
Sbjct: 2 KKSISVLRKESQIKNFISTIITN-ELTNANIYNP--TVTDVVLSTDLGHVKVFLAF--SS 56
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+ + A+ +IR R+ ++L N R VPEL F D + ++++ ++ K
Sbjct: 57 KENDGLDAVKNASGYIRKRLSKTL-NWRKVPELHFYIDEVEKKAFEIDQILNSLK 110
>gi|15829143|ref|NP_326503.1| ribosome-binding factor A [Mycoplasma pulmonis UAB CTIP]
gi|20978644|sp|Q98PP7|RBFA_MYCPU RecName: Full=Ribosome-binding factor A
gi|14090087|emb|CAC13845.1| RIBOSOME-BINDING FACTOR A [Mycoplasma pulmonis]
Length = 112
Score = 71.9 bits (176), Expect = 3e-11, Method: Composition-based stats.
Identities = 19/95 (20%), Positives = 45/95 (47%), Gaps = 5/95 (5%)
Query: 27 ILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRI 86
I++ E Q+ + + ++ + +S DL VY++ + + + LN +I+ ++
Sbjct: 20 IISEEVQN--LKDVLTTVVGIKLSSDLSHCNVYVTFSKNSKKN--LERLNQASGYIKKQL 75
Query: 87 GRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
L+ R +P L F+ D + + K+ ++ K
Sbjct: 76 SSILKW-RKIPSLHFKIDDTFEKSLKIEQILEEIK 109
>gi|294660247|ref|NP_852898.2| ribosome-binding factor A [Mycoplasma gallisepticum str. R(low)]
gi|298286854|sp|Q7NBZ3|RBFA_MYCGA RecName: Full=Ribosome-binding factor A
gi|284811902|gb|AAP56466.2| Ribosome-binding factor A [Mycoplasma gallisepticum str. R(low)]
gi|284930358|gb|ADC30297.1| Ribosome-binding factor A [Mycoplasma gallisepticum str. R(high)]
Length = 119
Score = 71.5 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 27/110 (24%), Positives = 48/110 (43%), Gaps = 4/110 (3%)
Query: 12 ALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRV 71
LR+ + L I E + LI VI+ + +S D VA +YI + + +
Sbjct: 6 TLRLEATIHKLLSQAIS-TEINNSLIKTSVIT--AIKLSDDKSVAKIYIDCLIPNNIAKT 62
Query: 72 ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+ A R + + L +R +P+L F YD S+ K++ ++ K
Sbjct: 63 LQAYKDATGVFRHVLSKHL-TIRRIPQLVFYYDDSISKGAKIDQILAEIK 111
>gi|300788181|ref|YP_003768472.1| ribosome-binding factor A [Amycolatopsis mediterranei U32]
gi|299797695|gb|ADJ48070.1| ribosome-binding factor A [Amycolatopsis mediterranei U32]
Length = 158
Score = 71.5 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 25/113 (22%), Positives = 52/113 (46%), Gaps = 9/113 (7%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV---- 66
RA ++ + + + I +E +D + D ++I++ ++ DL ATVY ++ +
Sbjct: 6 RARKLAKRISQIVASAI-EHEVKDTRL--DYVTITDTKVTGDLHDATVYYTVLGEKLDVP 62
Query: 67 -SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+AL +R ++G+ +RY P L F DT + ++ L+
Sbjct: 63 PDFAGAAAALESARGMLRTKVGQG-TGVRYTPTLTFVADTIPEESKRIEDLLA 114
>gi|150021374|ref|YP_001306728.1| ribosome-binding factor A [Thermosipho melanesiensis BI429]
gi|166199571|sp|A6LN42|RBFA_THEM4 RecName: Full=Ribosome-binding factor A
gi|149793895|gb|ABR31343.1| ribosome-binding factor A [Thermosipho melanesiensis BI429]
Length = 125
Score = 71.1 bits (174), Expect = 4e-11, Method: Composition-based stats.
Identities = 28/108 (25%), Positives = 50/108 (46%), Gaps = 2/108 (1%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS-PD 69
R ++ ++R + + + + + I IS V +S D R A V++S D
Sbjct: 6 RNKKIENKIRGLISEGLQKIKVPEIDALKSYIVISRVLVSKDKRFADVFVSYIGDADSRK 65
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
R + L F R I ++LR + PELRF+ D ++ ++N L+
Sbjct: 66 RAVELLEKYKGFFRKYIAQNLR-IYTTPELRFKEDIGIEESIRINKLL 112
>gi|58584793|ref|YP_198366.1| ribosome-binding factor A [Wolbachia endosymbiont strain TRS of
Brugia malayi]
gi|58419109|gb|AAW71124.1| Ribosome-binding factor A [Wolbachia endosymbiont strain TRS of
Brugia malayi]
Length = 114
Score = 71.1 bits (174), Expect = 5e-11, Method: Composition-based stats.
Identities = 27/113 (23%), Positives = 54/113 (47%), Gaps = 10/113 (8%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPD- 69
R L++ +R A+ V++ + + IS+V +S DL+ A VYI L
Sbjct: 6 RNLKIASVLRRAISKVLMEGKV-----FNKNVVISDVKLSGDLKKADVYIVLSSLSKKKY 60
Query: 70 ---RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
V+ +N + IR I + +LR++P+L F+ D + ++ ++ ++
Sbjct: 61 NINTVVDEINQSAWLIRKSILSYV-DLRFIPKLVFKADLAFDNFVNISKILSN 112
>gi|45658539|ref|YP_002625.1| ribosomal-binding factor A [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|56749627|sp|Q72NX4|RBFA_LEPIC RecName: Full=Ribosome-binding factor A
gi|45601782|gb|AAS71262.1| ribosomal-binding factor A [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
Length = 117
Score = 70.8 bits (173), Expect = 5e-11, Method: Composition-based stats.
Identities = 23/110 (20%), Positives = 48/110 (43%), Gaps = 8/110 (7%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
R ++ E + +IL+ + +D + ++S+ +S D + V+++ + D
Sbjct: 5 RRRKIEAEAVRTVAMMILSGKVKDPRVH--MVSVHRAEISEDGKNMKVFVTAICTDKKKI 62
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDT----SLQSYWKLNA 115
+V+S LN + + L LR P++ F +D SL +L
Sbjct: 63 KVLSGLNSASGLFQATLSGKL-GLRITPKMHFLWDEEYIQSLDESLRLTR 111
>gi|307299145|ref|ZP_07578946.1| ribosome-binding factor A [Thermotogales bacterium mesG1.Ag.4.2]
gi|306914941|gb|EFN45327.1| ribosome-binding factor A [Thermotogales bacterium mesG1.Ag.4.2]
Length = 123
Score = 70.8 bits (173), Expect = 6e-11, Method: Composition-based stats.
Identities = 26/115 (22%), Positives = 58/115 (50%), Gaps = 4/115 (3%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDV 66
+S R + E++ L + + + + ++SI V ++ D R ATV++S + D
Sbjct: 3 SSYRKEMLESEIKKVLTVTLSSYTSYNDSLG--MVSIVRVELTKDKRFATVFVSLMGPDE 60
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
S +++ LN + R I +++R + PE+RF+ D +++ ++ L+ +
Sbjct: 61 SKKKLVKRLNEDKGIFRTAIAKNIRLFK-APEIRFKEDIGIEASLRVAQLLEKIE 114
>gi|330875220|gb|EGH09369.1| ribosome-binding factor A [Pseudomonas syringae pv. glycinea str.
race 4]
Length = 66
Score = 70.8 bits (173), Expect = 6e-11, Method: Composition-based stats.
Identities = 14/68 (20%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
K R R+G++++ L +I E +D + +++I+ V +S D+ A +++++
Sbjct: 2 AKEYSRTQRIGDQMQRELAQLI-RREIKDPRVG--LVTITAVDVSRDVGHAKIFMTVMGQ 58
Query: 66 VSPDRVIS 73
S + +
Sbjct: 59 DSAEEIAQ 66
>gi|145638856|ref|ZP_01794464.1| ribosome-binding factor A [Haemophilus influenzae PittII]
gi|145271828|gb|EDK11737.1| ribosome-binding factor A [Haemophilus influenzae PittII]
Length = 57
Score = 70.4 bits (172), Expect = 7e-11, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP 63
+ +R+ RV +E++ + VIL E +D I ++++S+V +S DL A +++
Sbjct: 2 AREFKRSDRVAQEIQKEIA-VILQREVKDPRIG--MVTVSDVEVSSDLSYAKIFVYFF 56
>gi|258652419|ref|YP_003201575.1| ribosome-binding factor A [Nakamurella multipartita DSM 44233]
gi|258555644|gb|ACV78586.1| ribosome-binding factor A [Nakamurella multipartita DSM 44233]
Length = 193
Score = 70.4 bits (172), Expect = 8e-11, Method: Composition-based stats.
Identities = 26/108 (24%), Positives = 52/108 (48%), Gaps = 5/108 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS-PD 69
RA R+ + + S + I +E +D + D+++I+ ++ DLR ATVY ++ D
Sbjct: 6 RARRLAKRIVSIVATQI-QHEVKDPRL--DMVTITAATVTPDLREATVYYTVYGDDDVVA 62
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ L +R +G +++ P L FR D + +++ L+
Sbjct: 63 AAGAGLASATGVLRSAVGAQ-TGIKFTPTLEFRLDAVPANAHRIDELL 109
>gi|190571748|ref|YP_001976106.1| ribosomal binding factor A [Wolbachia endosymbiont of Culex
quinquefasciatus Pel]
gi|213019232|ref|ZP_03335039.1| ribosomal binding factor A [Wolbachia endosymbiont of Culex
quinquefasciatus JHB]
gi|190358020|emb|CAQ55489.1| ribosomal binding factor A [Wolbachia endosymbiont of Culex
quinquefasciatus Pel]
gi|212995341|gb|EEB55982.1| ribosomal binding factor A [Wolbachia endosymbiont of Culex
quinquefasciatus JHB]
Length = 116
Score = 70.4 bits (172), Expect = 8e-11, Method: Composition-based stats.
Identities = 27/115 (23%), Positives = 55/115 (47%), Gaps = 12/115 (10%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL------ 64
R L+V + A+ V++ + + +S+V +S DL+ A VYI L
Sbjct: 6 RNLKVASVLHRAISKVLMEGNVLNEK-----VVVSDVKLSKDLKKADVYIVLSSLNIQND 60
Query: 65 DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ V++ +N + IR I + +LR++PEL F+ D + ++ ++ ++
Sbjct: 61 NDDISTVVNEMNQSAWSIRKSILCYV-DLRFIPELVFKPDLAFDNFVNVSKILHN 114
>gi|24213644|ref|NP_711125.1| ribosomal-binding factor A [Leptospira interrogans serovar Lai str.
56601]
gi|29427777|sp|Q8F7K0|RBFA_LEPIN RecName: Full=Ribosome-binding factor A
gi|24194446|gb|AAN48143.1| ribosomal-binding factor A [Leptospira interrogans serovar Lai str.
56601]
Length = 117
Score = 70.0 bits (171), Expect = 1e-10, Method: Composition-based stats.
Identities = 23/110 (20%), Positives = 47/110 (42%), Gaps = 8/110 (7%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
R ++ E + +IL+ + +D + ++S+ +S D + V+++ + D
Sbjct: 5 RRRKIEAEAVRTVAMMILSGKVKDPRVH--MVSVHRAEISEDGKNMKVFVTAICTDKKKI 62
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDT----SLQSYWKLNA 115
+V+S LN + + L LR P + F +D SL +L
Sbjct: 63 KVLSGLNSASGLFQATLSGKL-GLRITPRMHFLWDEEYIQSLDESLRLTR 111
>gi|254823209|ref|ZP_05228210.1| ribosome-binding factor A [Mycobacterium intracellulare ATCC 13950]
Length = 162
Score = 70.0 bits (171), Expect = 1e-10, Method: Composition-based stats.
Identities = 25/110 (22%), Positives = 51/110 (46%), Gaps = 9/110 (8%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL---DVS 67
RA R+ + + + + I E +D + ++I + ++ DL ATV+ ++ D
Sbjct: 6 RARRLAKRINTIVASAI-EFEIKDPGLDG--VTIVDAKVTADLHDATVFYTVMGRTLDDE 62
Query: 68 PD--RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNA 115
PD +AL +R +G + +R+ P L F DT+ + +++
Sbjct: 63 PDYGAAAAALERAKGALRTMVG-AGTGVRFTPTLTFTRDTTSDNVQRMDE 111
>gi|269115302|ref|YP_003303065.1| ribosome-binding factor A [Mycoplasma hominis]
gi|268322927|emb|CAX37662.1| Ribosome-binding factor A [Mycoplasma hominis ATCC 23114]
Length = 113
Score = 70.0 bits (171), Expect = 1e-10, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 31 EFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSL 90
E +D ++ ISI++V +S D A +Y++L D R + L FIR + ++
Sbjct: 23 ELKDFDVTN--ISINDVILSNDGSHAKIYVTLFKDQK--RYLEKLTTMTPFIRSVVAKNW 78
Query: 91 RNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+ + +PEL F DT + K++ ++ +
Sbjct: 79 KY-KVLPELIFEIDTVEEHAAKIDKILNKIE 108
>gi|332283703|ref|YP_004415614.1| ribosome-binding factor A [Pusillimonas sp. T7-7]
gi|330427656|gb|AEC18990.1| ribosome-binding factor A [Pusillimonas sp. T7-7]
Length = 136
Score = 70.0 bits (171), Expect = 1e-10, Method: Composition-based stats.
Identities = 25/126 (19%), Positives = 54/126 (42%), Gaps = 8/126 (6%)
Query: 2 KNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS 61
++K+ N R R+ ++++ L +I E +I+++ V +S D A VY +
Sbjct: 3 RHKSKPNPGRNTRLADQIQKDLAGLIQR-ELDVSR--AGLITLTSVELSADYAHAKVYFT 59
Query: 62 LPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM---C 118
+ + ++ + + L ++ VP LRF +D L +L+ L+
Sbjct: 60 VMGAEPEAASAAL-AEKAGWLHSLLFK-LLHIHTVPTLRFIHDDQLARGIELSQLIDRAN 117
Query: 119 LPKIPV 124
P++
Sbjct: 118 RPQVEP 123
>gi|116328712|ref|YP_798432.1| ribosome-binding factor A [Leptospira borgpetersenii serovar
Hardjo-bovis L550]
gi|116330630|ref|YP_800348.1| ribosome-binding factor A [Leptospira borgpetersenii serovar
Hardjo-bovis JB197]
gi|122281615|sp|Q04U30|RBFA_LEPBJ RecName: Full=Ribosome-binding factor A
gi|122283503|sp|Q04ZJ6|RBFA_LEPBL RecName: Full=Ribosome-binding factor A
gi|116121456|gb|ABJ79499.1| Ribosome-binding factor A [Leptospira borgpetersenii serovar
Hardjo-bovis L550]
gi|116124319|gb|ABJ75590.1| Ribosome-binding factor A [Leptospira borgpetersenii serovar
Hardjo-bovis JB197]
Length = 117
Score = 69.6 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 23/118 (19%), Positives = 53/118 (44%), Gaps = 6/118 (5%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS-LPLDVSPD 69
R ++ E + +IL+ + +D + ++S+ +S D + V+++ + D
Sbjct: 5 RRRKIEAEAVRTVAMMILSGKVKDPRVH--MVSVHRAEISEDGKNMKVFVTAICTDKKKL 62
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALE 127
+V+S LN + + L LR P ++F +D + L+ + L + P + +
Sbjct: 63 KVLSGLNSAAGLFQTTLSGKL-GLRITPRMQFLWDE--EYIQSLDESLRLTRKPTSAD 117
>gi|148284848|ref|YP_001248938.1| ribosome-binding factor A [Orientia tsutsugamushi str. Boryong]
gi|146740287|emb|CAM80662.1| Ribosome-binding factor A [Orientia tsutsugamushi str. Boryong]
Length = 120
Score = 69.6 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 32/126 (25%), Positives = 57/126 (45%), Gaps = 14/126 (11%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVA---- 56
MK S + LR +R AL+ V+ +N+ L I++++V L A
Sbjct: 1 MKKIYQAKSYKTLRTANMIRLALIDVLHSNKLHTDLFECK-ITVTKV-----LAQAGQGM 54
Query: 57 -TVYISLPLDVS--PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKL 113
YI + D+++ A+N ++ IR I + + NL+Y PELR YD + +
Sbjct: 55 YHCYILPFSNSKLSQDKLMHAINDSLPIIRRMITQKI-NLKYSPELRIFYDYGFDNAANV 113
Query: 114 NALMCL 119
+ ++
Sbjct: 114 DKILKS 119
>gi|189183521|ref|YP_001937306.1| ribosome-binding factor A [Orientia tsutsugamushi str. Ikeda]
gi|189180292|dbj|BAG40072.1| ribosome-binding factor A [Orientia tsutsugamushi str. Ikeda]
Length = 120
Score = 69.6 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 32/126 (25%), Positives = 57/126 (45%), Gaps = 14/126 (11%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVA---- 56
MK S + LR +R AL+ V+ +N+ L I++++V L A
Sbjct: 1 MKKIYQAKSYKTLRTANMIRLALIDVLHSNKLHTDLFECK-ITVTKV-----LAQAGQGM 54
Query: 57 -TVYISLPLDVS--PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKL 113
YI + D+++ A+N ++ IR I + + NL+Y PELR YD + +
Sbjct: 55 YHCYILPFSNSKVSQDKLMHAINDSLPIIRRMITQKI-NLKYSPELRIFYDYGFDNAANV 113
Query: 114 NALMCL 119
+ ++
Sbjct: 114 DKILKS 119
>gi|68536218|ref|YP_250923.1| ribosome-binding factor A [Corynebacterium jeikeium K411]
gi|260578916|ref|ZP_05846820.1| ribosome-binding factor A [Corynebacterium jeikeium ATCC 43734]
gi|123650896|sp|Q4JV52|RBFA_CORJK RecName: Full=Ribosome-binding factor A
gi|68263817|emb|CAI37305.1| rbfA [Corynebacterium jeikeium K411]
gi|258602968|gb|EEW16241.1| ribosome-binding factor A [Corynebacterium jeikeium ATCC 43734]
Length = 141
Score = 69.6 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 24/118 (20%), Positives = 50/118 (42%), Gaps = 9/118 (7%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-----D 65
RA R+ + ++ + I +D + ++I++ ++ DL ATV+ ++ +
Sbjct: 6 RAARMAKRIQQIVATAIERQ-IKDPRLE--FVTITDARVTGDLHDATVFYTVRGKTVDAE 62
Query: 66 VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIP 123
+AL +R +G L ++R+ P L F DT ++ L+ K
Sbjct: 63 PDTATAEAALAKATGQLRKIVGDQL-SVRFTPTLSFSLDTVPEASAHFEELLARAKAQ 119
>gi|302528538|ref|ZP_07280880.1| ribosome-binding factor A [Streptomyces sp. AA4]
gi|302437433|gb|EFL09249.1| ribosome-binding factor A [Streptomyces sp. AA4]
Length = 157
Score = 69.2 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 22/113 (19%), Positives = 50/113 (44%), Gaps = 9/113 (7%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
RA ++ + + + I ++ +D + ++I++ ++ DL ATVY ++ +
Sbjct: 6 RARKLAKRISQIVASAI-EHDVKDPRLGA--VTITDARVTADLHDATVYYTVLGESLDAE 62
Query: 71 -----VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+AL +R ++G+ +RY P L F D+ ++ L+
Sbjct: 63 PDFASAAAALEAARGVLRTKVGQG-TGVRYTPTLTFVADSVPDDARRIEELLA 114
>gi|313678877|ref|YP_004056617.1| ribosome-binding factor A [Mycoplasma bovis PG45]
gi|312950648|gb|ADR25243.1| ribosome-binding factor A [Mycoplasma bovis PG45]
Length = 113
Score = 69.2 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 23/115 (20%), Positives = 54/115 (46%), Gaps = 6/115 (5%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
K S LR ++++ + +I N E + I ++++ +S DL ++++
Sbjct: 2 KKSISILRKESQIKNFISTIITN-ELTNTNIYNP--TVTDCVLSADLSHVKIFLAF--SS 56
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+ + A+ +IR + ++L N R +PEL F D + ++++ ++ K
Sbjct: 57 KENDGLEAVRNASGYIRKVLSKTL-NWRKIPELHFYIDEVEKKAFEIDQILNSLK 110
>gi|198282696|ref|YP_002219017.1| ribosome-binding factor A [Acidithiobacillus ferrooxidans ATCC
53993]
gi|218666166|ref|YP_002424888.1| ribosome-binding factor A [Acidithiobacillus ferrooxidans ATCC
23270]
gi|254789724|sp|B7J4D5|RBFA_ACIF2 RecName: Full=Ribosome-binding factor A
gi|254789725|sp|B5EMD1|RBFA_ACIF5 RecName: Full=Ribosome-binding factor A
gi|198247217|gb|ACH82810.1| ribosome-binding factor A [Acidithiobacillus ferrooxidans ATCC
53993]
gi|218518379|gb|ACK78965.1| ribosome-binding factor A [Acidithiobacillus ferrooxidans ATCC
23270]
Length = 128
Score = 69.2 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 33/128 (25%), Positives = 50/128 (39%), Gaps = 3/128 (2%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
M + + + R RV +R + V+ +S SI+ V + D+R ATVY
Sbjct: 1 MLHSSHRPYPRGARVAHLLREEIAAVLPRLHGMSSGLSPLPPSITMVDLPTDMRSATVYF 60
Query: 61 SLPLDVSPDRVI-SALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM-C 118
SL I L + I ++ LR +P L F YD ++ L+
Sbjct: 61 SLMDGPDRADTIREVLQDHAGEI-RQLLGRRLALRRIPPLHFVYDARFDRGAEMAELLAH 119
Query: 119 LPKIPVAL 126
LP P L
Sbjct: 120 LPPAPEDL 127
>gi|295698479|ref|YP_003603134.1| ribosome-binding factor A [Candidatus Riesia pediculicola USDA]
gi|291157464|gb|ADD79909.1| ribosome-binding factor A [Candidatus Riesia pediculicola USDA]
Length = 132
Score = 68.8 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 24/120 (20%), Positives = 53/120 (44%), Gaps = 17/120 (14%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL------ 64
R+ ++ ++ L W++ + D + + +I V + DL A V+ S+
Sbjct: 7 RSKKLSRMIQKELSWILHRHIM-DPRMKKIMIL--HVDLRRDLSFAKVFFSIFFSYSKMI 63
Query: 65 -----DVSPDRVISALNCNI--KFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ S V+ LN K +R + + + +R +P+L F D S++ +++ L+
Sbjct: 64 SFSRKEKSSKEVVELLNDRQFLKMVRYLLAQKI-EIRMIPKLTFFQDRSIEESIRIDHLI 122
>gi|240171287|ref|ZP_04749946.1| ribosome-binding factor A [Mycobacterium kansasii ATCC 12478]
Length = 165
Score = 68.8 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 26/110 (23%), Positives = 54/110 (49%), Gaps = 9/110 (8%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL---DVS 67
RA R+ + + + + I E +D ++ ++I++ ++ DL ATVY ++ D
Sbjct: 6 RARRLAKRITTIVASAI-EYEIKDPGLAG--VTITDAKVTADLHDATVYYTVMGPTLDDE 62
Query: 68 PD--RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNA 115
PD +AL+ +R ++G + +R+ P L F DT+ + ++
Sbjct: 63 PDYAAAAAALDRAKGVLRTKVG-AGTGVRFTPTLTFTRDTTSDTVHRMEE 111
>gi|296171630|ref|ZP_06852844.1| ribosome-binding factor A [Mycobacterium parascrofulaceum ATCC
BAA-614]
gi|295893991|gb|EFG73754.1| ribosome-binding factor A [Mycobacterium parascrofulaceum ATCC
BAA-614]
Length = 157
Score = 68.8 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 26/110 (23%), Positives = 53/110 (48%), Gaps = 9/110 (8%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL---DVS 67
RA R+ + + + + I E +D + ++I + ++ DL ATV+ ++ D
Sbjct: 6 RARRLAKRINTIVASAI-EFEIKDPGLDG--VTIVDTKVTADLHDATVFYTVMGRTLDDE 62
Query: 68 PD--RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNA 115
PD +AL+ +R +G + +R+ P L F DT+L + +++
Sbjct: 63 PDYAAAAAALDRAKGALRTMVG-AGTGVRFTPTLTFTRDTTLDTVQRMDE 111
>gi|15805926|ref|NP_294625.1| ribosome-binding factor A [Deinococcus radiodurans R1]
gi|20978665|sp|Q9RVX0|RBFA_DEIRA RecName: Full=Ribosome-binding factor A
gi|6458618|gb|AAF10475.1|AE001942_7 ribosome-binding factor A, putative [Deinococcus radiodurans R1]
Length = 128
Score = 68.8 bits (168), Expect = 3e-10, Method: Composition-based stats.
Identities = 19/97 (19%), Positives = 40/97 (41%), Gaps = 5/97 (5%)
Query: 6 PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
P + +V ++ L I E +D + ++++ V ++ D A VY+S +
Sbjct: 22 PGPLMKPEQVQAQMSRVLSSAIA--ELRDPRVP-LIVTVERVHVTPDYGQARVYVS-AIG 77
Query: 66 VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFR 102
++ AL ++ + +R +R P L F
Sbjct: 78 ADMPELLDALTHARGRLQRELSAHVR-MRRTPTLEFH 113
>gi|291298972|ref|YP_003510250.1| ribosome-binding factor A [Stackebrandtia nassauensis DSM 44728]
gi|290568192|gb|ADD41157.1| ribosome-binding factor A [Stackebrandtia nassauensis DSM 44728]
Length = 145
Score = 68.8 bits (168), Expect = 3e-10, Method: Composition-based stats.
Identities = 25/108 (23%), Positives = 51/108 (47%), Gaps = 5/108 (4%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-D 65
S +A ++ E V L + +D + +++I++ ++ D R AT+Y ++ D
Sbjct: 2 SESAKARKMAERV-KELTATAIRAHVKDPRLG--MVTITDARLTPDFREATLYYTVFGDD 58
Query: 66 VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKL 113
S +AL+ +R +G++L LR+ P L F D + ++
Sbjct: 59 DSHAASAAALDSAKGLLRSNVGKAL-GLRHSPSLTFVADRLPEDVNRI 105
>gi|41409004|ref|NP_961840.1| ribosome-binding factor A [Mycobacterium avium subsp.
paratuberculosis K-10]
gi|118464538|ref|YP_882869.1| ribosome-binding factor A [Mycobacterium avium 104]
gi|254776127|ref|ZP_05217643.1| ribosome-binding factor A [Mycobacterium avium subsp. avium ATCC
25291]
gi|61215112|sp|Q73VV5|RBFA_MYCPA RecName: Full=Ribosome-binding factor A
gi|166218449|sp|A0QIY1|RBFA_MYCA1 RecName: Full=Ribosome-binding factor A
gi|41397363|gb|AAS05223.1| RbfA [Mycobacterium avium subsp. paratuberculosis K-10]
gi|118165825|gb|ABK66722.1| ribosome-binding factor A [Mycobacterium avium 104]
Length = 162
Score = 68.8 bits (168), Expect = 3e-10, Method: Composition-based stats.
Identities = 26/110 (23%), Positives = 51/110 (46%), Gaps = 9/110 (8%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL---DVS 67
RA R+ + + + + I E +D + ++I + ++ DL ATV+ ++ D
Sbjct: 6 RARRLAKRINTIVASAI-EFEIKDPGLDG--VTIVDTKVTADLHDATVFYTVMGRTLDDE 62
Query: 68 PD--RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNA 115
PD +AL +R +G + +R+ P L F DT+ S +++
Sbjct: 63 PDYGAAAAALERAKGALRTMVG-AGTGVRFTPTLTFTRDTTSDSVARMDE 111
>gi|118617683|ref|YP_906015.1| ribosome-binding factor A [Mycobacterium ulcerans Agy99]
gi|166219379|sp|A0PQC5|RBFA_MYCUA RecName: Full=Ribosome-binding factor A
gi|118569793|gb|ABL04544.1| ribosome-binding factor a RbfA [Mycobacterium ulcerans Agy99]
Length = 175
Score = 68.4 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 25/110 (22%), Positives = 52/110 (47%), Gaps = 9/110 (8%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL---DVS 67
RA R+ + + + + I E +D + ++I++ ++ DL ATVY ++ D
Sbjct: 6 RARRLAKRITTIVASAI-EYEIKDPGLVG--VTITDAKVTADLHDATVYYTVMGPTLDGE 62
Query: 68 PD--RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNA 115
PD +AL +R ++G + +R+ P L F D + + +++
Sbjct: 63 PDYAAAAAALERAKGVLRTKVG-AGTGVRFTPTLTFTRDVTSDTVHRMDE 111
>gi|306781028|ref|ZP_07419365.1| putative ribosome-binding factor A [Mycobacterium tuberculosis
SUMu002]
gi|308326163|gb|EFP15014.1| putative ribosome-binding factor A [Mycobacterium tuberculosis
SUMu002]
Length = 176
Score = 68.4 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 21/90 (23%), Positives = 42/90 (46%), Gaps = 8/90 (8%)
Query: 31 EFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR-----VISALNCNIKFIRGR 85
E +D ++ ++I++ ++ DL ATVY ++ D +AL +R +
Sbjct: 25 EIKDPGLAG--VTITDAKVTADLHDATVYYTVMGRTLHDEPNCAGAAAALERAKGVLRTK 82
Query: 86 IGRSLRNLRYVPELRFRYDTSLQSYWKLNA 115
+G + +R+ P L F DT S +++
Sbjct: 83 VG-AGTGVRFTPTLTFTLDTISDSVHRMDE 111
>gi|15609975|ref|NP_217354.1| ribosome-binding factor A [Mycobacterium tuberculosis H37Rv]
gi|15842379|ref|NP_337416.1| ribosome-binding factor A [Mycobacterium tuberculosis CDC1551]
gi|31794015|ref|NP_856508.1| ribosome-binding factor A [Mycobacterium bovis AF2122/97]
gi|121638718|ref|YP_978942.1| ribosome-binding factor A [Mycobacterium bovis BCG str. Pasteur
1173P2]
gi|148662679|ref|YP_001284202.1| ribosome-binding factor A [Mycobacterium tuberculosis H37Ra]
gi|148824028|ref|YP_001288782.1| ribosome-binding factor A [Mycobacterium tuberculosis F11]
gi|167968167|ref|ZP_02550444.1| ribosome-binding factor A [Mycobacterium tuberculosis H37Ra]
gi|215412660|ref|ZP_03421384.1| ribosome-binding factor A [Mycobacterium tuberculosis 94_M4241A]
gi|215428275|ref|ZP_03426194.1| ribosome-binding factor A [Mycobacterium tuberculosis T92]
gi|215431779|ref|ZP_03429698.1| ribosome-binding factor A [Mycobacterium tuberculosis EAS054]
gi|218754585|ref|ZP_03533381.1| ribosome-binding factor A [Mycobacterium tuberculosis GM 1503]
gi|224991210|ref|YP_002645899.1| ribosome-binding factor A [Mycobacterium bovis BCG str. Tokyo 172]
gi|253798076|ref|YP_003031077.1| ribosome-binding factor A rbfA [Mycobacterium tuberculosis KZN
1435]
gi|254232933|ref|ZP_04926260.1| ribosome-binding factor A rbfA [Mycobacterium tuberculosis C]
gi|254365485|ref|ZP_04981530.1| ribosome-binding factor A rbfA [Mycobacterium tuberculosis str.
Haarlem]
gi|254551902|ref|ZP_05142349.1| ribosome-binding factor A [Mycobacterium tuberculosis '98-R604
INH-RIF-EM']
gi|260187855|ref|ZP_05765329.1| ribosome-binding factor A [Mycobacterium tuberculosis CPHL_A]
gi|260201969|ref|ZP_05769460.1| ribosome-binding factor A [Mycobacterium tuberculosis T46]
gi|260206149|ref|ZP_05773640.1| ribosome-binding factor A [Mycobacterium tuberculosis K85]
gi|289444389|ref|ZP_06434133.1| ribosome-binding factor A rbfA [Mycobacterium tuberculosis T46]
gi|289448500|ref|ZP_06438244.1| translation initiation factor IF-2 infB [Mycobacterium tuberculosis
CPHL_A]
gi|289553374|ref|ZP_06442584.1| ribosome-binding factor A rbfA [Mycobacterium tuberculosis KZN 605]
gi|289575539|ref|ZP_06455766.1| ribosome-binding factor A rbfA [Mycobacterium tuberculosis K85]
gi|289751498|ref|ZP_06510876.1| ribosome-binding factor A rbfA [Mycobacterium tuberculosis T92]
gi|289754945|ref|ZP_06514323.1| ribosome-binding factor A rbfA [Mycobacterium tuberculosis EAS054]
gi|289763014|ref|ZP_06522392.1| ribosome-binding factor A rbfA [Mycobacterium tuberculosis GM 1503]
gi|294994071|ref|ZP_06799762.1| ribosome-binding factor A [Mycobacterium tuberculosis 210]
gi|297635451|ref|ZP_06953231.1| ribosome-binding factor A [Mycobacterium tuberculosis KZN 4207]
gi|297732449|ref|ZP_06961567.1| ribosome-binding factor A [Mycobacterium tuberculosis KZN R506]
gi|298526307|ref|ZP_07013716.1| ribosome-binding factor A rbfA [Mycobacterium tuberculosis
94_M4241A]
gi|306777121|ref|ZP_07415458.1| ribosome-binding factor A rbfA [Mycobacterium tuberculosis SUMu001]
gi|306785665|ref|ZP_07423987.1| ribosome-binding factor A rbfA [Mycobacterium tuberculosis SUMu003]
gi|306789705|ref|ZP_07428027.1| ribosome-binding factor A rbfA [Mycobacterium tuberculosis SUMu004]
gi|306794338|ref|ZP_07432640.1| ribosome-binding factor A rbfA [Mycobacterium tuberculosis SUMu005]
gi|306798762|ref|ZP_07437064.1| ribosome-binding factor A rbfA [Mycobacterium tuberculosis SUMu006]
gi|306804608|ref|ZP_07441276.1| ribosome-binding factor A rbfA [Mycobacterium tuberculosis SUMu008]
gi|306807358|ref|ZP_07444026.1| ribosome-binding factor A rbfA [Mycobacterium tuberculosis SUMu007]
gi|306968901|ref|ZP_07481562.1| ribosome-binding factor A rbfA [Mycobacterium tuberculosis SUMu009]
gi|306973237|ref|ZP_07485898.1| ribosome-binding factor A rbfA [Mycobacterium tuberculosis SUMu010]
gi|307080946|ref|ZP_07490116.1| ribosome-binding factor A rbfA [Mycobacterium tuberculosis SUMu011]
gi|307085541|ref|ZP_07494654.1| ribosome-binding factor A rbfA [Mycobacterium tuberculosis SUMu012]
gi|313659781|ref|ZP_07816661.1| ribosome-binding factor A [Mycobacterium tuberculosis KZN V2475]
gi|54039025|sp|P65965|RBFA_MYCBO RecName: Full=Ribosome-binding factor A
gi|54041786|sp|P65964|RBFA_MYCTU RecName: Full=Ribosome-binding factor A
gi|166218450|sp|A1KMI1|RBFA_MYCBP RecName: Full=Ribosome-binding factor A
gi|166219378|sp|A5U6J0|RBFA_MYCTA RecName: Full=Ribosome-binding factor A
gi|254789757|sp|C1AFV2|RBFA_MYCBT RecName: Full=Ribosome-binding factor A
gi|1648882|emb|CAB03671.1| PROBABLE RIBOSOME-BINDING FACTOR A RBFA (P15B PROTEIN)
[Mycobacterium tuberculosis H37Rv]
gi|13882678|gb|AAK47230.1| ribosome-binding factor A [Mycobacterium tuberculosis CDC1551]
gi|31619609|emb|CAD95048.1| PROBABLE RIBOSOME-BINDING FACTOR A RBFA (P15B PROTEIN)
[Mycobacterium bovis AF2122/97]
gi|121494366|emb|CAL72847.1| Probable ribosome-binding factor A rbfA [Mycobacterium bovis BCG
str. Pasteur 1173P2]
gi|124601992|gb|EAY61002.1| ribosome-binding factor A rbfA [Mycobacterium tuberculosis C]
gi|134150998|gb|EBA43043.1| ribosome-binding factor A rbfA [Mycobacterium tuberculosis str.
Haarlem]
gi|148506831|gb|ABQ74640.1| ribosome-binding factor A [Mycobacterium tuberculosis H37Ra]
gi|148722555|gb|ABR07180.1| ribosome-binding factor A rbfA [Mycobacterium tuberculosis F11]
gi|224774325|dbj|BAH27131.1| ribosome-binding factor A [Mycobacterium bovis BCG str. Tokyo 172]
gi|253319579|gb|ACT24182.1| ribosome-binding factor A rbfA [Mycobacterium tuberculosis KZN
1435]
gi|289417308|gb|EFD14548.1| ribosome-binding factor A rbfA [Mycobacterium tuberculosis T46]
gi|289421458|gb|EFD18659.1| translation initiation factor IF-2 infB [Mycobacterium tuberculosis
CPHL_A]
gi|289438006|gb|EFD20499.1| ribosome-binding factor A rbfA [Mycobacterium tuberculosis KZN 605]
gi|289539970|gb|EFD44548.1| ribosome-binding factor A rbfA [Mycobacterium tuberculosis K85]
gi|289692085|gb|EFD59514.1| ribosome-binding factor A rbfA [Mycobacterium tuberculosis T92]
gi|289695532|gb|EFD62961.1| ribosome-binding factor A rbfA [Mycobacterium tuberculosis EAS054]
gi|289710520|gb|EFD74536.1| ribosome-binding factor A rbfA [Mycobacterium tuberculosis GM 1503]
gi|298496101|gb|EFI31395.1| ribosome-binding factor A rbfA [Mycobacterium tuberculosis
94_M4241A]
gi|308214518|gb|EFO73917.1| ribosome-binding factor A rbfA [Mycobacterium tuberculosis SUMu001]
gi|308329693|gb|EFP18544.1| ribosome-binding factor A rbfA [Mycobacterium tuberculosis SUMu003]
gi|308333832|gb|EFP22683.1| ribosome-binding factor A rbfA [Mycobacterium tuberculosis SUMu004]
gi|308337347|gb|EFP26198.1| ribosome-binding factor A rbfA [Mycobacterium tuberculosis SUMu005]
gi|308341000|gb|EFP29851.1| ribosome-binding factor A rbfA [Mycobacterium tuberculosis SUMu006]
gi|308346213|gb|EFP35064.1| ribosome-binding factor A rbfA [Mycobacterium tuberculosis SUMu007]
gi|308348816|gb|EFP37667.1| ribosome-binding factor A rbfA [Mycobacterium tuberculosis SUMu008]
gi|308353542|gb|EFP42393.1| ribosome-binding factor A rbfA [Mycobacterium tuberculosis SUMu009]
gi|308357383|gb|EFP46234.1| ribosome-binding factor A rbfA [Mycobacterium tuberculosis SUMu010]
gi|308361335|gb|EFP50186.1| ribosome-binding factor A rbfA [Mycobacterium tuberculosis SUMu011]
gi|308364932|gb|EFP53783.1| ribosome-binding factor A rbfA [Mycobacterium tuberculosis SUMu012]
gi|323718565|gb|EGB27734.1| ribosome-binding factor A rbfA [Mycobacterium tuberculosis
CDC1551A]
gi|326904452|gb|EGE51385.1| ribosome-binding factor A rbfA [Mycobacterium tuberculosis W-148]
gi|328457849|gb|AEB03272.1| ribosome-binding factor A rbfA [Mycobacterium tuberculosis KZN
4207]
Length = 183
Score = 68.4 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 21/90 (23%), Positives = 42/90 (46%), Gaps = 8/90 (8%)
Query: 31 EFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR-----VISALNCNIKFIRGR 85
E +D ++ ++I++ ++ DL ATVY ++ D +AL +R +
Sbjct: 25 EIKDPGLAG--VTITDAKVTADLHDATVYYTVMGRTLHDEPNCAGAAAALERAKGVLRTK 82
Query: 86 IGRSLRNLRYVPELRFRYDTSLQSYWKLNA 115
+G + +R+ P L F DT S +++
Sbjct: 83 VG-AGTGVRFTPTLTFTLDTISDSVHRMDE 111
>gi|288819210|ref|YP_003433558.1| ribosome-binding factor A [Hydrogenobacter thermophilus TK-6]
gi|288788610|dbj|BAI70357.1| ribosome-binding factor A [Hydrogenobacter thermophilus TK-6]
gi|308752792|gb|ADO46275.1| ribosome-binding factor A [Hydrogenobacter thermophilus TK-6]
Length = 105
Score = 68.4 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 23/105 (21%), Positives = 49/105 (46%), Gaps = 5/105 (4%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
S R ++ + ++ + ++ E D ++ + I+ + +S D + A +Y + +
Sbjct: 2 SIRREKLTKLLKEEIAEIL--REAHDPRLA--MAVITRLDLSKDGKHAKIYFTTIPEGVE 57
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKL 113
V ALN +I + +L++VP L F++D L+ KL
Sbjct: 58 KDVEKALNAAEGYI-RSLLLRRLSLKFVPHLTFKFDVELKQLEKL 101
>gi|19572315|emb|CAD19082.1| ribosome binding factor [Stigmatella aurantiaca]
Length = 144
Score = 68.4 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 7/93 (7%)
Query: 13 LRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL---DVSPD 69
LRV + + + E D L+ +S++ ++ D R A + +LP +
Sbjct: 33 LRVQSTLFQEVARLF-RGELSDPLLEG--VSVTSFELTPDGRNARIGFTLPPEYAEGGSA 89
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFR 102
+ +AL FIR ++ L NL+ VP LRF
Sbjct: 90 PIEAALVRASGFIRAQLALGL-NLKRVPHLRFV 121
>gi|183981908|ref|YP_001850199.1| ribosome-binding factor a RbfA [Mycobacterium marinum M]
gi|238690923|sp|B2HKS3|RBFA_MYCMM RecName: Full=Ribosome-binding factor A
gi|183175234|gb|ACC40344.1| ribosome-binding factor a RbfA [Mycobacterium marinum M]
Length = 175
Score = 68.4 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 25/110 (22%), Positives = 52/110 (47%), Gaps = 9/110 (8%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL---DVS 67
RA R+ + + + + I E +D + ++I++ ++ DL ATVY ++ D
Sbjct: 6 RARRLAKRITTIVASAI-EYEIKDPGLVG--VTITDAKVTADLHDATVYYTVMGPTLDDE 62
Query: 68 PD--RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNA 115
PD +AL +R ++G + +R+ P L F D + + +++
Sbjct: 63 PDYAAAAAALERAKGVLRTKVG-AGTGVRFTPTLTFTRDVTSDTVHRMDE 111
>gi|319950917|ref|ZP_08024794.1| ribosome-binding factor A [Dietzia cinnamea P4]
gi|319435410|gb|EFV90653.1| ribosome-binding factor A [Dietzia cinnamea P4]
Length = 152
Score = 68.1 bits (166), Expect = 4e-10, Method: Composition-based stats.
Identities = 28/127 (22%), Positives = 58/127 (45%), Gaps = 14/127 (11%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
RA R+G+ + + I +E +D + ++I++ ++ DLRVAT+Y ++ + +
Sbjct: 6 RAGRLGKRIGEIVATAI-EHEIKDPRLEY--VTITDSRITADLRVATLYYTVRGETLDEE 62
Query: 71 -----VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC-----LP 120
+AL +R +GR +++ PEL F D+ + + L+
Sbjct: 63 PDLEAAEAALTAARGRLRTMVGRQ-TGVKFTPELTFVLDSVPDAARHMEELLARARASDE 121
Query: 121 KIPVALE 127
++ A E
Sbjct: 122 QVRRAAE 128
>gi|304373274|ref|YP_003856483.1| Ribosome-binding factor A [Mycoplasma hyorhinis HUB-1]
gi|304309465|gb|ADM21945.1| Ribosome-binding factor A [Mycoplasma hyorhinis HUB-1]
Length = 115
Score = 68.1 bits (166), Expect = 4e-10, Method: Composition-based stats.
Identities = 22/113 (19%), Positives = 40/113 (35%), Gaps = 16/113 (14%)
Query: 5 NPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL 64
K S + + + L +S++ V +S D VY S
Sbjct: 7 QKKESHYHQLIAQIINENLSEKFE-------------VSVTAVKLSNDGSHLRVYFSFLK 53
Query: 65 DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ + L FI+ ++ + + VPEL F DT + K++ L+
Sbjct: 54 NDKK--SLEYLENAKGFIKHKLAQQSTTYK-VPELHFELDTVAKEVEKIDKLI 103
>gi|145638857|ref|ZP_01794465.1| ribosome-binding factor A [Haemophilus influenzae PittII]
gi|145271829|gb|EDK11738.1| ribosome-binding factor A [Haemophilus influenzae PittII]
Length = 77
Score = 68.1 bits (166), Expect = 4e-10, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
Query: 61 SLPLDVSP---DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ D ++ + L +IR +G+++R LR VPE+RF YD SL +++ L+
Sbjct: 3 TFLFDHDETAIEQGMKGLEKASPYIRSLLGKAMR-LRIVPEIRFIYDQSLVEGMRMSNLV 61
Query: 118 CLPKIPVALEK 128
+ +K
Sbjct: 62 TN-VVREDEKK 71
>gi|330723853|gb|AEC46223.1| ribosome-binding factor A [Mycoplasma hyorhinis MCLD]
Length = 115
Score = 68.1 bits (166), Expect = 4e-10, Method: Composition-based stats.
Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Query: 42 ISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRF 101
+S++ V +S D VY S + + L FI+ ++ + + VPEL F
Sbjct: 31 VSVTAVKLSNDGSHLRVYFSFLKNDKK--SLEYLENAKGFIKHKLAQQSTTYK-VPELHF 87
Query: 102 RYDTSLQSYWKLNALM 117
DT + K++ L+
Sbjct: 88 ELDTVAKEVEKIDKLI 103
>gi|262202087|ref|YP_003273295.1| ribosome-binding factor A [Gordonia bronchialis DSM 43247]
gi|262085434|gb|ACY21402.1| ribosome-binding factor A [Gordonia bronchialis DSM 43247]
Length = 151
Score = 67.7 bits (165), Expect = 5e-10, Method: Composition-based stats.
Identities = 25/121 (20%), Positives = 56/121 (46%), Gaps = 9/121 (7%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV---- 66
RA R+ + + S + I +E +D ++ ++I++ ++ DL AT+Y ++ +
Sbjct: 6 RAQRLAKRISSIVATAIA-HEIKDPRLAY--VTITDAKVTGDLHDATLYYTVMGESLDTE 62
Query: 67 -SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
+ + L +R ++G + +R+ P LRF DT + ++ L+ +
Sbjct: 63 PDFEAAAAGLAKATGVLRSKVG-AGTGVRFTPTLRFVLDTVPDAARQMEELVARARASDE 121
Query: 126 L 126
L
Sbjct: 122 L 122
>gi|323453068|gb|EGB08940.1| hypothetical protein AURANDRAFT_63469 [Aureococcus anophagefferens]
Length = 248
Score = 67.3 bits (164), Expect = 6e-10, Method: Composition-based stats.
Identities = 34/109 (31%), Positives = 53/109 (48%), Gaps = 7/109 (6%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQ----DRLISRDV--ISISEVCMSVDLR 54
M + SRR RV + VRS L VI + F DR+ + + S+ +V +S DLR
Sbjct: 38 MAREEVDRSRRQSRVAQLVRSELATVIRDGAFLVKTGDRVDAEVLKSTSVLDVSVSPDLR 97
Query: 55 VATVYISLPLD-VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFR 102
AT I+ D + S L N + +R + + L++ + VP + FR
Sbjct: 98 AATATITTLGDTSAKREAFSWLVKNERSVRYALAKRLKHSKRVPAVTFR 146
>gi|301167100|emb|CBW26679.1| ribosome-binding factor A [Bacteriovorax marinus SJ]
Length = 120
Score = 66.9 bits (163), Expect = 9e-10, Method: Composition-based stats.
Identities = 19/96 (19%), Positives = 37/96 (38%), Gaps = 3/96 (3%)
Query: 24 MWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIR 83
+ D + +SI+ V +S DL + +Y A+ +R
Sbjct: 19 ANAFIRTSVSDPSL--TFVSITRVELSDDLSNSKLYWDTFDASRRGDSKKAILAITGKLR 76
Query: 84 GRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ + L+ +R+VP + F YD+ K+ L+
Sbjct: 77 THLSKLLK-MRHVPTITFVYDSQYDEEKKIEDLLDD 111
>gi|296122803|ref|YP_003630581.1| ribosome-binding factor A [Planctomyces limnophilus DSM 3776]
gi|296015143|gb|ADG68382.1| ribosome-binding factor A [Planctomyces limnophilus DSM 3776]
Length = 198
Score = 66.9 bits (163), Expect = 9e-10, Method: Composition-based stats.
Identities = 23/122 (18%), Positives = 49/122 (40%), Gaps = 9/122 (7%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
SRR + + V + I+ + +D + +++ ++ D+R A V++S+
Sbjct: 3 SRRLAKASQAVLETVSLTIMRH-IRDPRVKN--VTVLSAEVAPDMRTARVHVSVMGTPKE 59
Query: 69 DRV-ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDT----SLQSYWKLNALMCLPKIP 123
+ + L F + +I L RY P L F D S+++ L ++ +
Sbjct: 60 QSLCMHGLQSACGFFQAKIADRLET-RYTPVLTFVLDQGVKLSIETSKALREVLPTDEAD 118
Query: 124 VA 125
Sbjct: 119 SD 120
>gi|297623614|ref|YP_003705048.1| ribosome-binding factor A [Truepera radiovictrix DSM 17093]
gi|297164794|gb|ADI14505.1| ribosome-binding factor A [Truepera radiovictrix DSM 17093]
Length = 98
Score = 66.5 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 27/96 (28%), Positives = 41/96 (42%), Gaps = 7/96 (7%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
S+R R E AL +I +D I V +I V +S D A V +S +
Sbjct: 4 SQRHARALE---RALAELIPQ--LKDPRIP-VVATIERVRLSADFSAAKVLVSTLREEDE 57
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYD 104
+ +AL F++ R+ + +LR P L F D
Sbjct: 58 APLKAALERASGFLQRRLAAA-ADLRRTPRLSFHTD 92
>gi|256379829|ref|YP_003103489.1| ribosome-binding factor A [Actinosynnema mirum DSM 43827]
gi|255924132|gb|ACU39643.1| ribosome-binding factor A [Actinosynnema mirum DSM 43827]
Length = 149
Score = 66.1 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 23/113 (20%), Positives = 52/113 (46%), Gaps = 9/113 (7%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV---- 66
RA ++ + + + + ++ +D ++R ++I++ ++ DL ATVY ++ +
Sbjct: 6 RARKLAKRISQIVASAL-EHQVKDPRLAR--VTITDTKVTGDLHDATVYYTVLGEKLDSE 62
Query: 67 -SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+AL +R +G+ +R+ P L F DT K++ L+
Sbjct: 63 PDLAGAAAALEKAKGVLRSMVGQQ-TGVRFTPTLTFVTDTVPDEARKMDELLA 114
>gi|319789746|ref|YP_004151379.1| ribosome-binding factor A [Thermovibrio ammonificans HB-1]
gi|317114248|gb|ADU96738.1| ribosome-binding factor A [Thermovibrio ammonificans HB-1]
Length = 99
Score = 66.1 bits (161), Expect = 2e-09, Method: Composition-based stats.
Identities = 24/93 (25%), Positives = 37/93 (39%), Gaps = 4/93 (4%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPD 69
RR R+ + L +I E +++ V +S D A V+IS
Sbjct: 4 RRRERLKSVLVRELSQII-REEIDLP--ENLFVTVQGVELSKDGSKAKVFISALNREDAV 60
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFR 102
R + LN +I +G+ LR L+ VP F
Sbjct: 61 RAVEQLNRAQGYIHHLLGKRLR-LKVVPRPEFF 92
>gi|169630212|ref|YP_001703861.1| ribosome-binding factor A (RbfA) [Mycobacterium abscessus ATCC
19977]
gi|238688905|sp|B1MD86|RBFA_MYCA9 RecName: Full=Ribosome-binding factor A
gi|169242179|emb|CAM63207.1| Ribosome-binding factor A (RbfA) [Mycobacterium abscessus]
Length = 158
Score = 66.1 bits (161), Expect = 2e-09, Method: Composition-based stats.
Identities = 26/121 (21%), Positives = 54/121 (44%), Gaps = 9/121 (7%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
RA R+ + + + + I E +D + ++++++ ++ DL ATVY ++ D
Sbjct: 6 RARRLAKRIGAIVASAI-EYEIKDPRL--TMVTVTDTRVTNDLHDATVYYTVMGQTLSDE 62
Query: 71 -----VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
+AL+ +R ++G + +R+ P L F DT S + L+ + A
Sbjct: 63 PDFAGAAAALDKAKGVLRTKVG-AGTGVRFTPTLTFVLDTMADSARHMEELLDRTRAADA 121
Query: 126 L 126
Sbjct: 122 A 122
>gi|269120923|ref|YP_003309100.1| ribosome-binding factor A [Sebaldella termitidis ATCC 33386]
gi|268614801|gb|ACZ09169.1| ribosome-binding factor A [Sebaldella termitidis ATCC 33386]
Length = 120
Score = 66.1 bits (161), Expect = 2e-09, Method: Composition-based stats.
Identities = 27/116 (23%), Positives = 57/116 (49%), Gaps = 6/116 (5%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-- 64
N RR + +E+ + +L D++ R ++SI E +S D + ++ S+
Sbjct: 1 MNDRRRQGLEKEISRIVGTTLLTEVKNDKI--RRLVSIKETTLSKDGKYVDLFFSILDID 58
Query: 65 -DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+++ +++I LN F R IG L +R+ PE+R D + + K+++++
Sbjct: 59 ENLNKEKLIEDLNKLKGFFRKAIGSEL-TIRHTPEVRIHIDNTAEYGVKISSILNQ 113
>gi|262037350|ref|ZP_06010815.1| ribosome-binding factor A [Leptotrichia goodfellowii F0264]
gi|261748607|gb|EEY35981.1| ribosome-binding factor A [Leptotrichia goodfellowii F0264]
Length = 120
Score = 66.1 bits (161), Expect = 2e-09, Method: Composition-based stats.
Identities = 26/113 (23%), Positives = 57/113 (50%), Gaps = 9/113 (7%)
Query: 21 SALMWVI---LNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP---LDVSPDRVISA 74
+ ++ L E ++ I ++++SI +V ++ D R + S+ +V+ ++++
Sbjct: 11 KEISRIVGITLLTEIKNEKI-KNLVSIHKVELTKDGRYLDLTFSILDLKNNVNKEKIVED 69
Query: 75 LNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALE 127
L F R IG L ++R+VPE+R D S++ K+++++ K E
Sbjct: 70 LEKLKGFFRKTIGSQL-SVRFVPEIRIHIDDSVEYGVKISSILNEIK-QKDSE 120
>gi|257126081|ref|YP_003164195.1| ribosome-binding factor A [Leptotrichia buccalis C-1013-b]
gi|257050020|gb|ACV39204.1| ribosome-binding factor A [Leptotrichia buccalis C-1013-b]
Length = 122
Score = 65.4 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 61/122 (50%), Gaps = 6/122 (4%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-- 64
N RR + +E+ + +L D++ ++++SI +V ++ D R + S+
Sbjct: 1 MNDRRKKGLEKEISRIVGMTLLTEVKNDKI--KNLVSIHKVELTKDGRYLDLTFSILDLK 58
Query: 65 -DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIP 123
+V+ +++ LN F R +IG L ++R+VPE+R D S++ K+ +++ K
Sbjct: 59 DNVNREKIAEDLNKLKGFFRKQIGSQL-SIRFVPEVRIHLDDSVEYGVKIASILNEIKKE 117
Query: 124 VA 125
Sbjct: 118 ND 119
>gi|320108343|ref|YP_004183933.1| ribosome-binding factor A [Terriglobus saanensis SP1PR4]
gi|319926864|gb|ADV83939.1| ribosome-binding factor A [Terriglobus saanensis SP1PR4]
Length = 178
Score = 65.4 bits (159), Expect = 3e-09, Method: Composition-based stats.
Identities = 22/120 (18%), Positives = 53/120 (44%), Gaps = 6/120 (5%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
M + R R+ E +R + + + E D I +++EV ++ + VY+
Sbjct: 1 MPEHRAREHHR-NRLAETLREEIAII-IEGELNDPRIGST--TVTEVALAPGGKSGHVYV 56
Query: 61 SL-PLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
++ + D + L +IR ++ + +R++P+L F D S + +++ ++
Sbjct: 57 AVVGTEEEEDATLEGLVAARGYIRSQLLERM-GVRHLPDLAFHIDRSERLSARMDQILTR 115
>gi|42521110|ref|NP_967025.1| ribosomal binding factor A [Wolbachia endosymbiont of Drosophila
melanogaster]
gi|58698397|ref|ZP_00373309.1| Ribosome-binding factor A [Wolbachia endosymbiont of Drosophila
ananassae]
gi|225631017|ref|YP_002727808.1| ribosomal binding factor A [Wolbachia sp. wRi]
gi|225677159|ref|ZP_03788157.1| ribosomal binding factor A [Wolbachia endosymbiont of Muscidifurax
uniraptor]
gi|13569582|gb|AAK31156.1|AF348330_2 ribosomal binding factor A [Wolbachia sp. wRi]
gi|42410851|gb|AAS14959.1| ribosomal binding factor A [Wolbachia endosymbiont of Drosophila
melanogaster]
gi|58535079|gb|EAL59166.1| Ribosome-binding factor A [Wolbachia endosymbiont of Drosophila
ananassae]
gi|225590783|gb|EEH12012.1| ribosomal binding factor A [Wolbachia endosymbiont of Muscidifurax
uniraptor]
gi|225592998|gb|ACN96017.1| ribosomal binding factor A [Wolbachia sp. wRi]
Length = 132
Score = 65.0 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 29/131 (22%), Positives = 58/131 (44%), Gaps = 28/131 (21%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-------- 62
R L++ + A+ V++ + +++S+V +S DL+ A VYI L
Sbjct: 6 RNLKIASVLHRAISRVLMEGKV-----FNKNVAVSDVKLSKDLKKADVYIVLSSLNIQVA 60
Query: 63 -PLDVSPDR-------------VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQ 108
LD R V++ +N + IR I + +LR++PEL F+ D +
Sbjct: 61 DYLDPEKRRTGDPSENNCDINTVVNEMNQSAWSIRKSILCYV-DLRFIPELVFKPDLAFD 119
Query: 109 SYWKLNALMCL 119
++ ++ ++
Sbjct: 120 NFVNVSKILHN 130
>gi|219117739|ref|XP_002179659.1| chitinase glycoside hydrolase family 18, ribosome-binding factor
[Phaeodactylum tricornutum CCAP 1055/1]
gi|217408712|gb|EEC48645.1| chitinase glycoside hydrolase family 18, ribosome-binding factor
[Phaeodactylum tricornutum CCAP 1055/1]
Length = 240
Score = 65.0 bits (158), Expect = 4e-09, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 50/118 (42%), Gaps = 19/118 (16%)
Query: 3 NKNPKNSRRALRVGEEVRSALMWVILNNEFQ-------DRLISRDVISISEVCMSVDLRV 55
+KN + S+R RVG VR+ + ++ + D + + IS+ +S DLR
Sbjct: 63 SKNTERSKRQERVGHLVRTEISNILHGGVIKGQDAEYLDAELRQR-ISVVSADISPDLRQ 121
Query: 56 ATVYISLP-----------LDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFR 102
A + +S+ V R + L N K IR + + + +++ P L F
Sbjct: 122 ARISVSVRAPPRNDQAEYNPAVDKRRAYAWLVRNTKPIRHTLAQRMSHMKSCPNLSFV 179
>gi|313893692|ref|ZP_07827259.1| ribosome-binding factor A [Veillonella sp. oral taxon 158 str.
F0412]
gi|313441706|gb|EFR60131.1| ribosome-binding factor A [Veillonella sp. oral taxon 158 str.
F0412]
Length = 66
Score = 63.4 bits (154), Expect = 9e-09, Method: Composition-based stats.
Identities = 14/61 (22%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
R ++ E ++ + +++ +D I +I++V ++ DLR AT+Y+SL ++
Sbjct: 5 RVRKLQEFIKQEVSQMLMRG-LKDPRIG--FTTITDVHVTGDLREATIYVSLFGSDKENK 61
Query: 71 V 71
+
Sbjct: 62 I 62
>gi|326382942|ref|ZP_08204632.1| ribosome-binding factor A [Gordonia neofelifaecis NRRL B-59395]
gi|326198532|gb|EGD55716.1| ribosome-binding factor A [Gordonia neofelifaecis NRRL B-59395]
Length = 154
Score = 63.4 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 24/118 (20%), Positives = 53/118 (44%), Gaps = 9/118 (7%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
RA R+ + + + + I E +D ++ ++I++ ++ DL ATV+ ++ D
Sbjct: 6 RAARLAKRITTIVASAI-GGEIKDPRLAH--VTITDCRVTGDLHDATVFYTVMGDSVESE 62
Query: 71 -----VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIP 123
+ L +R ++G + +R+ P LRF DT + ++ L+ +
Sbjct: 63 PDVAEAAAGLAAATGALRSKVG-AGTGVRFTPTLRFELDTVPDATRAMDELLARARAQ 119
>gi|206602203|gb|EDZ38685.1| Probable ribosome-binding factor A [Leptospirillum sp. Group II
'5-way CG']
Length = 131
Score = 63.4 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 6/103 (5%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
RRA RV E+R + V+ + + R ++I V + DL+VA ++ S+ P
Sbjct: 5 YRRADRVSSEIREIVALVLSRFSAE-PALGR--LTILYVNLPDDLKVARIHYSVFPGEDP 61
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYW 111
L + IR +G+ LR +++VP++ F SL+
Sbjct: 62 HYYGRLLTRHKGLIRKEVGKLLR-MKWVPDIEFLP--SLEIAD 101
>gi|317508534|ref|ZP_07966199.1| ribosome-binding protein A [Segniliparus rugosus ATCC BAA-974]
gi|316253160|gb|EFV12565.1| ribosome-binding protein A [Segniliparus rugosus ATCC BAA-974]
Length = 148
Score = 63.0 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 26/113 (23%), Positives = 50/113 (44%), Gaps = 9/113 (7%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
RA R+ + VR L+ + E D + +++ ++ M+ DLR T+Y ++ D
Sbjct: 6 RARRLAKRVR-TLVASAVELEIPDPRLE--LVTFTDAKMTADLREVTLYYTVRGASITDE 62
Query: 71 -----VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
A +RG +G L +++ P L+F DT + ++ L+
Sbjct: 63 PDTAGAAEAFAEVAGQLRGLVGARL-GVKFTPSLKFELDTVPDTVAQMEELVR 114
>gi|311087786|gb|ADP67865.1| ribosome-binding factor A [Buchnera aphidicola str. JF98
(Acyrthosiphon pisum)]
Length = 68
Score = 63.0 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
K R+ R+ +E++ + +I + +D I + +I++SEV +S DL A +++S
Sbjct: 3 KLFNRSDRIAQELQKKIAAII-QHSLKDPRI-KTIITVSEVQVSKDLSYAQIFVSFLESD 60
Query: 67 SPDRV 71
+ ++V
Sbjct: 61 NNEKV 65
>gi|330875202|gb|EGH09351.1| ribosome-binding factor A [Pseudomonas syringae pv. glycinea str.
race 4]
Length = 70
Score = 62.7 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 73 SALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALEK 128
LN F+R ++ R ++ LR VP+L F YD S+ L+AL+ + +
Sbjct: 1 KVLNSAAGFLRMQLAREMK-LRSVPQLHFHYDESVVRGAHLSALIER-AVAQDGQH 54
>gi|54026035|ref|YP_120277.1| ribosome-binding factor A [Nocardia farcinica IFM 10152]
gi|61214797|sp|Q5YSC8|RBFA_NOCFA RecName: Full=Ribosome-binding factor A
gi|54017543|dbj|BAD58913.1| putative ribosome-binding factor A [Nocardia farcinica IFM 10152]
Length = 147
Score = 61.9 bits (150), Expect = 3e-08, Method: Composition-based stats.
Identities = 23/112 (20%), Positives = 50/112 (44%), Gaps = 9/112 (8%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV---- 66
RA R+ + + + I E +D + ++I++ ++ DLR ATVY ++ +
Sbjct: 6 RARRLAKRISEIVATAI-EYEVKDPRL--RFVTITDAKVTGDLREATVYYTVMGETIDAE 62
Query: 67 -SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
D + L +R ++G + +++ P L F D + ++ L+
Sbjct: 63 PDYDAAAAGLAKAKGVLRSKVG-AGTGVKFTPSLAFVLDKVPDAAREMEELL 113
>gi|313679948|ref|YP_004057687.1| ribosome-binding factor a [Oceanithermus profundus DSM 14977]
gi|313152663|gb|ADR36514.1| ribosome-binding factor A [Oceanithermus profundus DSM 14977]
Length = 97
Score = 61.9 bits (150), Expect = 3e-08, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 6/84 (7%)
Query: 19 VRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCN 78
V AL +I ++ +D + V+++ V +S DL A V +S LN
Sbjct: 13 VARALSAII--HDMKDPRLP-IVVTVERVRLSPDLSQARVLVSAL--ERSQETAELLNHA 67
Query: 79 IKFIRGRIGRSLRNLRYVPELRFR 102
++++ + ++ LR +P LRF
Sbjct: 68 HRYLQEELAHAM-ELRRIPRLRFF 90
>gi|47458988|ref|YP_015850.1| ribosome-binding factor a [Mycoplasma mobile 163K]
gi|47458316|gb|AAT27639.1| ribosome-binding factor a [Mycoplasma mobile 163K]
Length = 121
Score = 61.9 bits (150), Expect = 3e-08, Method: Composition-based stats.
Identities = 19/96 (19%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Query: 27 ILNNEFQDRLISRDVI-SISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGR 85
IL+ +D + I ++ ++ +S D +Y+S D + + N F+R
Sbjct: 24 ILSLIIKDVKGYENFIPTLVDLQLSKDSSHLVIYLSF--DHYEKKALEHFNNAKGFVRSE 81
Query: 86 IGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+ R++ RY P++ F+ D + ++ ++A++ +
Sbjct: 82 LARNISA-RYTPDITFKLDEASKNGRNIDAILKKLE 116
>gi|261749661|ref|YP_003257347.1| ribosome-binding factor A [Blattabacterium sp. (Periplaneta
americana) str. BPLAN]
gi|261497754|gb|ACX84204.1| ribosome-binding factor A [Blattabacterium sp. (Periplaneta
americana) str. BPLAN]
Length = 101
Score = 61.5 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 21/96 (21%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
NS R R+ + +++ +E + +I++ ++CM+ DL + YIS+ +
Sbjct: 4 MNSIRNQRLSSIFYMEIAEILMKDETK----KGFLITLIKICMTPDLSLIKSYISIYPFL 59
Query: 67 SPDRVISALNCNIKFIRGRIGRSLR-NLRYVPELRF 101
+ ++ ++ F R + + LR ++ +PEL F
Sbjct: 60 DKE-ILESIRSKSGFYRKLLSKKLRYRVKKIPELDF 94
>gi|124515698|gb|EAY57207.1| probable ribosome-binding factor A [Leptospirillum rubarum]
Length = 131
Score = 61.5 bits (149), Expect = 4e-08, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 4/93 (4%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
RRA RV E+R + V+ + + R ++I V + DL+VA ++ S+ P
Sbjct: 5 YRRADRVSSEIREIVALVLSRFSAE-PALGR--LTILYVNLPDDLKVARIHYSVFPGEDP 61
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRF 101
L + IR +G+ LR ++++P++ F
Sbjct: 62 LYYGRLLTRHKGLIRKEVGKLLR-MKWIPDIEF 93
>gi|325295117|ref|YP_004281631.1| ribosome-binding factor A [Desulfurobacterium thermolithotrophum
DSM 11699]
gi|325065565|gb|ADY73572.1| ribosome-binding factor A [Desulfurobacterium thermolithotrophum
DSM 11699]
Length = 99
Score = 61.1 bits (148), Expect = 4e-08, Method: Composition-based stats.
Identities = 22/94 (23%), Positives = 38/94 (40%), Gaps = 4/94 (4%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPD 69
RR R+ + L ++ E ++I +V +S D TV+IS
Sbjct: 4 RRRERLKSLLIRELSDIL-RIEIDLPD--NAFVTIHDVHLSKDGSKVTVFISALKKEDAI 60
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRY 103
+ + LN +I +G+ L+ L+ VP F
Sbjct: 61 KAVEILNKATGYIHHILGKRLK-LKVVPRPEFVI 93
>gi|168012114|ref|XP_001758747.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162689884|gb|EDQ76253.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 168
Score = 61.1 bits (148), Expect = 5e-08, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 46/122 (37%), Gaps = 2/122 (1%)
Query: 4 KNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP 63
KN + S R R+ EV++ + + L+ R I +V MS DLR A V
Sbjct: 49 KNGQASIRQNRLASEVKAIISAALQQGPCNVPLLQRCGFEIHQVKMSRDLRKAFVLWKAL 108
Query: 64 LDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIP 123
+ V LN K +R + L N+ + P + F D ++ ++
Sbjct: 109 PGM-HQTVQKELNSQGKRLRSMVFHHL-NMPFSPAIEFLQDKVNPQAQAIDDILSKLDEE 166
Query: 124 VA 125
Sbjct: 167 SD 168
>gi|187251084|ref|YP_001875566.1| ribosome-binding factor A [Elusimicrobium minutum Pei191]
gi|186971244|gb|ACC98229.1| Ribosome-binding factor [Elusimicrobium minutum Pei191]
Length = 119
Score = 61.1 bits (148), Expect = 5e-08, Method: Composition-based stats.
Identities = 26/115 (22%), Positives = 48/115 (41%), Gaps = 12/115 (10%)
Query: 17 EEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALN 76
EE+ + + +I F+ ++I+ V +S DLR A V S+ V
Sbjct: 14 EEISTIISKMISTGSFK------GFVTITGVRISKDLRTAQVRYSVFGSVEDRITTQ--- 64
Query: 77 CNIKFIRGRIGRSLR---NLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALEK 128
+ +R IG LR +L+ +P F YD + + K+ + + + +K
Sbjct: 65 EKLSILRSEIGAMLRHRLHLKRIPSFTFVYDDTPEKASKVETIFSVIEKEKNADK 119
>gi|226356522|ref|YP_002786262.1| ribosome-binding factor A [Deinococcus deserti VCD115]
gi|226318512|gb|ACO46508.1| putative Ribosome-binding factor A [Deinococcus deserti VCD115]
Length = 95
Score = 60.7 bits (147), Expect = 5e-08, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 5/91 (5%)
Query: 12 ALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRV 71
+V ++ L I E +D + ++++ V ++ D +A VY+S P +
Sbjct: 3 PEQVQAQLTRVLSEAIA--ELRDPRVP-MIVTVERVTVTADYTLARVYVSALTSDMP-GL 58
Query: 72 ISALNCNIKFIRGRIGRSLRNLRYVPELRFR 102
+ ALN ++ IG ++ +R P L FR
Sbjct: 59 LDALNRARGHLQREIGAQVK-MRRTPTLEFR 88
>gi|193216989|ref|YP_002000231.1| ribosome-binding factor A [Mycoplasma arthritidis 158L3-1]
gi|193002312|gb|ACF07527.1| ribosome-binding factor A [Mycoplasma arthritidis 158L3-1]
Length = 110
Score = 60.7 bits (147), Expect = 7e-08, Method: Composition-based stats.
Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 5/93 (5%)
Query: 31 EFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSL 90
E QD ++ I+I++V +S D A VY++ D +R + FIR + +S
Sbjct: 23 ELQDFDVTN--IAINDVILSNDGSHAKVYVTFFKD--KERYFEKITKMAPFIRSVVAKSW 78
Query: 91 RNLRYVPELRFRYDTSLQSYWKLNALMCLPKIP 123
+ + +PEL F DT S K+ ++ K
Sbjct: 79 KY-KKLPELVFLIDTVEPSARKIEKILDNIKNQ 110
>gi|94985795|ref|YP_605159.1| ribosome-binding factor A [Deinococcus geothermalis DSM 11300]
gi|94556076|gb|ABF45990.1| ribosome-binding factor A [Deinococcus geothermalis DSM 11300]
Length = 96
Score = 60.7 bits (147), Expect = 7e-08, Method: Composition-based stats.
Identities = 20/88 (22%), Positives = 38/88 (43%), Gaps = 5/88 (5%)
Query: 15 VGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISA 74
V ++ L I +D + ++++ V ++ D +A VY+S + ++ A
Sbjct: 6 VEAQLSRVLSEAIA--GLRDPRVP-LIVTVERVAVTADYGLARVYVS-AMGAELPALLDA 61
Query: 75 LNCNIKFIRGRIGRSLRNLRYVPELRFR 102
L ++ + LR LR VP L F
Sbjct: 62 LAHARGHLQREVAAHLR-LRRVPTLEFH 88
>gi|12044995|ref|NP_072805.1| ribosome-binding factor A [Mycoplasma genitalium G37]
gi|255660293|ref|ZP_05405702.1| ribosome-binding factor A [Mycoplasma genitalium G37]
gi|1723113|sp|P47389|RBFA_MYCGE RecName: Full=Ribosome-binding factor A
gi|3844736|gb|AAC71361.1| ribosome-binding factor A [Mycoplasma genitalium G37]
gi|166078882|gb|ABY79500.1| ribosome-binding factor A [synthetic Mycoplasma genitalium
JCVI-1.0]
Length = 112
Score = 60.4 bits (146), Expect = 8e-08, Method: Composition-based stats.
Identities = 23/113 (20%), Positives = 46/113 (40%), Gaps = 4/113 (3%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
S R R+ ++ + I+N E D ++ +S V +S D A VY+
Sbjct: 3 SYRKQRIENDIIRLINRTIIN-EIYDPVVKLGHVS--HVKLSADFFHAVVYLDCYDRSQI 59
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
V++A + ++L + V +L F D ++ + K+ ++ K
Sbjct: 60 QTVVNAFKKAQGVFSQMLAQNLYLAKSV-KLHFVKDDAIDNALKIEQIINSLK 111
>gi|108799050|ref|YP_639247.1| ribosome-binding factor A [Mycobacterium sp. MCS]
gi|119868165|ref|YP_938117.1| ribosome-binding factor A [Mycobacterium sp. KMS]
gi|126434653|ref|YP_001070344.1| ribosome-binding factor A [Mycobacterium sp. JLS]
gi|123178949|sp|Q1BA93|RBFA_MYCSS RecName: Full=Ribosome-binding factor A
gi|166219376|sp|A3PY76|RBFA_MYCSJ RecName: Full=Ribosome-binding factor A
gi|166219377|sp|A1UER9|RBFA_MYCSK RecName: Full=Ribosome-binding factor A
gi|108769469|gb|ABG08191.1| ribosome-binding factor A [Mycobacterium sp. MCS]
gi|119694254|gb|ABL91327.1| ribosome-binding factor A [Mycobacterium sp. KMS]
gi|126234453|gb|ABN97853.1| ribosome-binding factor A [Mycobacterium sp. JLS]
Length = 171
Score = 60.4 bits (146), Expect = 8e-08, Method: Composition-based stats.
Identities = 26/116 (22%), Positives = 55/116 (47%), Gaps = 9/116 (7%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL---DVS 67
RA R+ + + + + I E +D ++ ++I++ ++ DL AT+Y ++ D
Sbjct: 6 RAKRLAKRISTIVASAI-EYEIKDPRLAG--VTITDSKVTNDLHDATLYYTVLGRSLDEE 62
Query: 68 PD--RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
PD +AL +R ++G + +R+ P L F DT + ++ L+ +
Sbjct: 63 PDYAGAAAALEKAKGVLRTKVG-AGTGVRFTPTLAFVRDTVPDTAHRMEELLARAR 117
>gi|13507895|ref|NP_109844.1| ribosome binding factor A [Mycoplasma pneumoniae M129]
gi|2496316|sp|P75589|RBFA_MYCPN RecName: Full=Ribosome-binding factor A
gi|46015193|pdb|1PA4|A Chain A, Solution Structure Of A Putative Ribosome-Binding Factor
From Mycoplasma Pneumoniae (Mpn156)
gi|1674381|gb|AAB96323.1| ribosome binding factor A [Mycoplasma pneumoniae M129]
gi|301633231|gb|ADK86785.1| ribosome-binding factor A [Mycoplasma pneumoniae FH]
Length = 116
Score = 60.0 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 20/108 (18%), Positives = 45/108 (41%), Gaps = 6/108 (5%)
Query: 17 EEVRSALMWVILNNEFQDRLISRDVIS---ISEVCMSVDLRVATVYISLPLDVSPDRVIS 73
E + + ++ +I I + + ++ V +S DL TVY+ DRV+
Sbjct: 7 ERLENDIIRLINRTVIH--EIYNETVKTGHVTHVKLSDDLLHVTVYLDCYNREQIDRVVG 64
Query: 74 ALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
A N + +L + V ++ F D ++ + ++ +++ K
Sbjct: 65 AFNQAKGVFSRVLAHNLYLAKAV-QIHFVKDKAIDNAMRIESIINSLK 111
>gi|320333640|ref|YP_004170351.1| ribosome-binding factor A [Deinococcus maricopensis DSM 21211]
gi|319754929|gb|ADV66686.1| ribosome-binding factor A [Deinococcus maricopensis DSM 21211]
Length = 94
Score = 60.0 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 19/88 (21%), Positives = 40/88 (45%), Gaps = 6/88 (6%)
Query: 15 VGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISA 74
+ ++ L I E +D + ++++ V ++ D +A Y+S D+ ++ A
Sbjct: 6 IEAQMTRVLSDAIA--ELRDPRVP-LIVTVERVSVTSDYSIARAYVSTIGDIGA--LLDA 60
Query: 75 LNCNIKFIRGRIGRSLRNLRYVPELRFR 102
L ++ + R++ NLR P L F
Sbjct: 61 LVNARGHLQREVARAM-NLRRTPMLEFF 87
>gi|297566626|ref|YP_003685598.1| ribosome-binding factor A [Meiothermus silvanus DSM 9946]
gi|296851075|gb|ADH64090.1| ribosome-binding factor A [Meiothermus silvanus DSM 9946]
Length = 109
Score = 59.6 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 19/86 (22%), Positives = 41/86 (47%), Gaps = 7/86 (8%)
Query: 17 EEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALN 76
++ L V+ ++ +D + + + V ++ DL A VY+ L D + L+
Sbjct: 10 SQIVRTLAEVL--HDLEDPRVPP-FVGVERVDVAPDLANAVVYVGLEPDS---PAFAVLH 63
Query: 77 CNIKFIRGRIGRSLRNLRYVPELRFR 102
++I+ + + +R LR +P L+F
Sbjct: 64 HARRYIQDELAQRMR-LRRIPRLKFV 88
>gi|219558853|ref|ZP_03537929.1| ribosome-binding factor A [Mycobacterium tuberculosis T17]
Length = 149
Score = 59.6 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Query: 43 SISEVCMSVDLRVATVYISLPLDVSPDR-----VISALNCNIKFIRGRIGRSLRNLRYVP 97
+I++ ++ DL ATVY ++ D +AL +R ++G + +R+ P
Sbjct: 1 TITDAKVTADLHDATVYYTVMGRTLHDEPNCAGAAAALERAKGVLRTKVG-AGTGVRFTP 59
Query: 98 ELRFRYDTSLQSYWKLNA 115
L F DT S +++
Sbjct: 60 TLTFTLDTISDSVHRMDE 77
>gi|15607135|ref|NP_213070.1| ribosome-binding factor A [Aquifex aeolicus VF5]
Length = 107
Score = 59.2 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/105 (26%), Positives = 54/105 (51%), Gaps = 6/105 (5%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
SR+ R+GE+++ + ++ N D V+SI+ V +S D A VY ++ + +
Sbjct: 2 SRKKERLGEQIKEIIASFVVENAPTD----LGVVSITRVELSKDGSKAKVYFTVLPEGNA 57
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKL 113
+RV L N + + +I + L+ ++ +P L F D ++ KL
Sbjct: 58 ERVKDFLEENKRVLLSKI-KKLK-VKTIPSLEFEEDREIKIMEKL 100
>gi|195447470|ref|XP_002071228.1| GK25240 [Drosophila willistoni]
gi|194167313|gb|EDW82214.1| GK25240 [Drosophila willistoni]
Length = 377
Score = 58.8 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 21/125 (16%), Positives = 54/125 (43%), Gaps = 9/125 (7%)
Query: 3 NKNPKNSRRALRVG---EEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVY 59
N +P + R+ + + + ++ + + + ++ R + ++ V +S D VY
Sbjct: 85 NLSPGSKHNTRRMAVLNKLFMTHITDLLASGQVSETILGRSL-QVTRVKISPDFSCINVY 143
Query: 60 ISLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
L D+ + L +R + + LR + VP ++F +D + + ++ A++
Sbjct: 144 W-LAGDIEIE---KELQRCSGQLRHELSQ-LRLMGEVPRIKFVHDKTGTNLDQVEAILRT 198
Query: 120 PKIPV 124
+P
Sbjct: 199 LNLPK 203
>gi|296394254|ref|YP_003659138.1| ribosome-binding factor A [Segniliparus rotundus DSM 44985]
gi|296181401|gb|ADG98307.1| ribosome-binding factor A [Segniliparus rotundus DSM 44985]
Length = 145
Score = 58.8 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 24/116 (20%), Positives = 51/116 (43%), Gaps = 9/116 (7%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR 70
RA R+ + VR+ + + +E D + +++ ++ M+ DLR T++ ++ D
Sbjct: 6 RARRLAKRVRTLIANAV-EHEIPDPRLE--LVTFTDAKMTADLREVTLFYTVRGASIADE 62
Query: 71 -----VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
A +RG +G L +++ P L+F D S ++ L+ +
Sbjct: 63 PDVAGAAEAFVEFAGRLRGLVGAQL-GVKFTPSLKFTLDKVPDSVAQMEELVRKSR 117
>gi|108760659|ref|YP_628560.1| putative ribosome-binding factor A [Myxococcus xanthus DK 1622]
gi|108464539|gb|ABF89724.1| putative ribosome-binding factor A [Myxococcus xanthus DK 1622]
Length = 120
Score = 58.0 bits (140), Expect = 4e-07, Method: Composition-based stats.
Identities = 20/97 (20%), Positives = 43/97 (44%), Gaps = 7/97 (7%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPD 69
R LRV + + E D + ++++ +S D R+ + ++ + +
Sbjct: 12 SRHLRVQSHLSQEVSRTF-RGELSDPRLEG--VALTSFELSPDGRLVRIGYTVTPEAAAA 68
Query: 70 ---RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRY 103
+ +AL ++R ++ L +L+ VP+LRF Y
Sbjct: 69 GLRPLQAALEGASGYLRSQLAEHL-DLKRVPQLRFIY 104
>gi|328703526|ref|XP_001947038.2| PREDICTED: putative ribosome-binding factor A, mitochondrial-like
[Acyrthosiphon pisum]
Length = 341
Score = 57.7 bits (139), Expect = 5e-07, Method: Composition-based stats.
Identities = 22/116 (18%), Positives = 49/116 (42%), Gaps = 2/116 (1%)
Query: 3 NKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL 62
N + S+R + + + + ++ E D+L+ + IS+VC++ D R VY
Sbjct: 68 NAGRQTSKRLAVLNKLLMKNITDLMATGENSDKLVGYGL-EISKVCIAGDYRSVNVYWMA 126
Query: 63 PLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ L +R + LR + +P+++F D + + ++ L+
Sbjct: 127 GKSEDDSLLDELLQMISGPLRHELS-ILRIMGEIPKIQFIKDKTYANIAAVDRLLS 181
>gi|308806199|ref|XP_003080411.1| ribosome-binding factor A protein-like (ISS) [Ostreococcus tauri]
gi|116058871|emb|CAL54578.1| ribosome-binding factor A protein-like (ISS) [Ostreococcus tauri]
Length = 159
Score = 57.7 bits (139), Expect = 5e-07, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 62 LPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ I L ++R +IG + +LR PE+R YD S + K++AL+
Sbjct: 14 FGSSIGKQNAIKGLKRMETYVRRKIGSRM-SLRLTPEIRLIYDDSFERGQKVSALL 68
>gi|303233402|ref|ZP_07320071.1| ribosome-binding factor A [Atopobium vaginae PB189-T1-4]
gi|302480531|gb|EFL43622.1| ribosome-binding factor A [Atopobium vaginae PB189-T1-4]
Length = 158
Score = 57.7 bits (139), Expect = 6e-07, Method: Composition-based stats.
Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 8/111 (7%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
SRR + R L ++ NN D + +I+I++V +SVD + VY+S
Sbjct: 7 SRRTNHIA---REKLASILTNN-ISDPALE--MIAITDVYVSVDKSLMIVYVSC-DSAQY 59
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
D V+ A + R+ R PEL FR DT++ ++ +
Sbjct: 60 DEVMCAFERAKGRL-RRLLGRALTWRTTPELVFRIDTTIDEAQAISRALTN 109
>gi|331703344|ref|YP_004400031.1| ribosome binding factor A [Mycoplasma mycoides subsp. capri LC str.
95010]
gi|328801899|emb|CBW54052.1| Ribosome binding factor A [Mycoplasma mycoides subsp. capri LC str.
95010]
Length = 117
Score = 57.3 bits (138), Expect = 8e-07, Method: Composition-based stats.
Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 6/98 (6%)
Query: 29 NNEFQDRLISRDVISISEVCMSVDLRVATVY---ISLPLDVSPDRVISALNCNIKFIRGR 85
E + ++ +S+ E +S D ++ I +P D++ + L +K IR
Sbjct: 23 QREIKSEILKS--VSVVETRLSADNSHVKIFYQFIPIPEDLTIQSIEEELENKLKEIRMI 80
Query: 86 IGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIP 123
+ L R VPEL F YDTSL +++ ++ K
Sbjct: 81 LASKLDW-RTVPELTFVYDTSLDRANQIDKILKEDKNK 117
>gi|195049291|ref|XP_001992690.1| GH24894 [Drosophila grimshawi]
gi|193893531|gb|EDV92397.1| GH24894 [Drosophila grimshawi]
Length = 410
Score = 57.3 bits (138), Expect = 8e-07, Method: Composition-based stats.
Identities = 25/116 (21%), Positives = 52/116 (44%), Gaps = 3/116 (2%)
Query: 5 NPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL 64
+ +N+RR + + +++ ++ + + ++ R + +S V +S D VY
Sbjct: 104 SKQNTRRMSVLNKLFMTSITDLLATGQAAESVLGRSL-QVSRVKISSDFACINVYWLGTG 162
Query: 65 DVSPDRVISA-LNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
V+ D V+ L +R + + LR + VP LRF D S + + A++
Sbjct: 163 QVASDAVLEVQLQRCTGQLRHELSQ-LRLMGEVPRLRFVRDKSGSNSNSIEAILRN 217
>gi|149194183|ref|ZP_01871281.1| ribosome-binding factor A [Caminibacter mediatlanticus TB-2]
gi|149136136|gb|EDM24614.1| ribosome-binding factor A [Caminibacter mediatlanticus TB-2]
Length = 115
Score = 57.3 bits (138), Expect = 8e-07, Method: Composition-based stats.
Identities = 25/117 (21%), Positives = 45/117 (38%), Gaps = 7/117 (5%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI--SLPL 64
S + R ++ + V+ D I +S+ +V S D A VY+ S
Sbjct: 2 GKSIKVQRKESLLKEIIPEVLSQ--MGDGRIRG--LSVVDVVCSRDGSDAKVYLEKSYLN 57
Query: 65 DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+ + + L +I+ + +S + VP L F +D L+ K+ L K
Sbjct: 58 ENEQKQALKKLKQARGYIQTQTLKSTGWYK-VPNLSFTFDDLLEKENKMEELFEKIK 113
>gi|320450019|ref|YP_004202115.1| ribosome-binding factor A [Thermus scotoductus SA-01]
gi|320150188|gb|ADW21566.1| ribosome-binding factor A [Thermus scotoductus SA-01]
Length = 95
Score = 56.9 bits (137), Expect = 9e-07, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 7/87 (8%)
Query: 17 EEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALN 76
E ++ AL I +D + ++++ V +S D RV TVY+ D ++ + AL+
Sbjct: 10 ERLKRALAEAI--GGLEDPRL--FLLTVEAVRLSPDGRVLTVYVEAFSDE--EKALLALS 63
Query: 77 CNIKFIRGRIGRSLRNLRYVPELRFRY 103
+ + I R +R LR++P L F
Sbjct: 64 HAERRLLSEIARRVR-LRHLPRLEFVP 89
>gi|42560882|ref|NP_975333.1| ribosome-binding factor A [Mycoplasma mycoides subsp. mycoides SC
str. PG1]
gi|42492379|emb|CAE76975.1| Ribosome-binding factor A [Mycoplasma mycoides subsp. mycoides SC
str. PG1]
gi|301321192|gb|ADK69835.1| ribosome-binding factor A [Mycoplasma mycoides subsp. mycoides SC
str. Gladysdale]
Length = 117
Score = 56.9 bits (137), Expect = 9e-07, Method: Composition-based stats.
Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 6/98 (6%)
Query: 29 NNEFQDRLISRDVISISEVCMSVDLRVATVY---ISLPLDVSPDRVISALNCNIKFIRGR 85
E + ++ +S+ E +S D ++ I +P D++ + L +K IR
Sbjct: 23 QREIKSEILKS--VSVVETRLSADNSHVKIFYQFIPIPEDLTIQSIEEELENKLKEIRMI 80
Query: 86 IGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIP 123
+ L R VPEL F YDTSL +++ ++ K
Sbjct: 81 LASKLDW-RTVPELTFVYDTSLDRANQIDKILKEDKNK 117
>gi|256383721|gb|ACU78291.1| ribosome-binding factor A [Mycoplasma mycoides subsp. capri str.
GM12]
gi|256384552|gb|ACU79121.1| ribosome-binding factor A [Mycoplasma mycoides subsp. capri str.
GM12]
gi|296455790|gb|ADH22025.1| ribosome-binding factor A [synthetic Mycoplasma mycoides
JCVI-syn1.0]
Length = 117
Score = 56.5 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 6/98 (6%)
Query: 29 NNEFQDRLISRDVISISEVCMSVDLRVATVY---ISLPLDVSPDRVISALNCNIKFIRGR 85
E + ++ +S+ E +S D ++ I +P +++ + L +K IR
Sbjct: 23 QREIKSEILKS--VSVVETRLSADNSHVKIFYQFIPIPENLTIQSIEEELENKLKEIRMI 80
Query: 86 IGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIP 123
+ L R VPEL F YDTSL +++ ++ K
Sbjct: 81 LASKLDW-RTVPELTFVYDTSLDRANQIDKILKEDKNK 117
>gi|224373559|ref|YP_002607931.1| ribosome-binding factor A [Nautilia profundicola AmH]
gi|223589205|gb|ACM92941.1| ribosome-binding factor A [Nautilia profundicola AmH]
Length = 115
Score = 56.1 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/114 (21%), Positives = 41/114 (35%), Gaps = 7/114 (6%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI--SLPL 64
S + R ++ + + D I +S+ +V S D A VY+ S
Sbjct: 2 GKSIKVQRKESILKEIIPEALSQ--MNDGRIRG--LSVVDVVCSRDGSDAKVYLEKSYLN 57
Query: 65 DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
D + L +I+ +S + VP L F +D L+ K+ L
Sbjct: 58 DKEQKASLKQLKQARGYIQNYCLKSTGWFK-VPNLSFTFDDLLEQENKMEDLFN 110
>gi|242012582|ref|XP_002427010.1| Ribosome-binding factor A, putative [Pediculus humanus corporis]
gi|212511248|gb|EEB14272.1| Ribosome-binding factor A, putative [Pediculus humanus corporis]
Length = 216
Score = 56.1 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 20/121 (16%), Positives = 52/121 (42%), Gaps = 5/121 (4%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS 67
S+R + + + ++ + +L+ I I++V +S + + A++Y + P +
Sbjct: 61 PSKRVSVLNKTFMQNISAIMTSGNHSSKLLGLG-IEITKVQISNNFKFASIYWTSPK-KN 118
Query: 68 PDRVISALNCNIKFIRGRI-GRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVAL 126
+ + L + I + + P+++F DT ++ +N ++ KI +
Sbjct: 119 HEITATILENAANELTHEIVASRI--MGKCPKIQFVRDTYFENMMNVNTILDNLKINETI 176
Query: 127 E 127
E
Sbjct: 177 E 177
>gi|270010091|gb|EFA06539.1| hypothetical protein TcasGA2_TC009443 [Tribolium castaneum]
Length = 344
Score = 56.1 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/113 (22%), Positives = 42/113 (37%), Gaps = 5/113 (4%)
Query: 4 KNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP 63
K N+RR + + + +I E I I+ V ++ D + V+
Sbjct: 60 KFSGNARRVSVLNKLFMRHITDLIATGE-YSSEFEGHEIEINRVQIAPDYKGLNVFWVAK 118
Query: 64 LDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNAL 116
+ V L N F+R + SLR + VP + F D + K+ L
Sbjct: 119 GTQDDEVVEKLLKKNAGFLRHELS-SLRVMGAVPMIHFVKDK---HHAKIAEL 167
>gi|91085647|ref|XP_970868.1| PREDICTED: similar to conserved hypothetical protein [Tribolium
castaneum]
Length = 323
Score = 55.3 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/113 (22%), Positives = 42/113 (37%), Gaps = 5/113 (4%)
Query: 4 KNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP 63
K N+RR + + + +I E I I+ V ++ D + V+
Sbjct: 39 KFSGNARRVSVLNKLFMRHITDLIATGE-YSSEFEGHEIEINRVQIAPDYKGLNVFWVAK 97
Query: 64 LDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNAL 116
+ V L N F+R + SLR + VP + F D + K+ L
Sbjct: 98 GTQDDEVVEKLLKKNAGFLRHELS-SLRVMGAVPMIHFVKDK---HHAKIAEL 146
>gi|328950654|ref|YP_004367989.1| ribosome-binding factor A [Marinithermus hydrothermalis DSM
14884]
gi|328450978|gb|AEB11879.1| ribosome-binding factor A [Marinithermus hydrothermalis DSM
14884]
Length = 96
Score = 55.3 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 17/74 (22%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
Query: 14 RVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVIS 73
R+ +V AL +I +E +D + V+++ VC++ DL V +S + +
Sbjct: 7 RLEVQVARALSEII--HEMKDPRLP-LVVTVERVCLTPDLSQGRVLVSAL--ERVEETVG 61
Query: 74 ALNCNIKFIRGRIG 87
LN F++ +
Sbjct: 62 ILNRAHGFLQEELA 75
>gi|152990171|ref|YP_001355893.1| ribosome-binding factor A [Nitratiruptor sp. SB155-2]
gi|151422032|dbj|BAF69536.1| ribosome-binding factor A [Nitratiruptor sp. SB155-2]
Length = 116
Score = 53.8 bits (129), Expect = 7e-06, Method: Composition-based stats.
Identities = 18/110 (16%), Positives = 42/110 (38%), Gaps = 7/110 (6%)
Query: 14 RVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI--SLPLDVSPDRV 71
R +R + + D ++ ++++EV + + A VY+ S+ +
Sbjct: 9 RAASLLRELIAEAL--GTLDDAMLRG--LTVTEVDVKRGMYDADVYLDKSIYTPEEQKEI 64
Query: 72 ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+ L ++ S + P+L F++D L+ ++ L K
Sbjct: 65 LKHLKRAAPIVQSYCLESSGWFKC-PKLHFKFDDMLEEQKRIEELFAKIK 113
>gi|297170972|gb|ADI21987.1| hypothetical protein [uncultured myxobacterium HF0200_01L06]
Length = 58
Score = 53.8 bits (129), Expect = 7e-06, Method: Composition-based stats.
Identities = 13/60 (21%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 9 SRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSP 68
SRR R+ E +R+ + + + D I + +++ V ++ D+ A V+ S +
Sbjct: 2 SRRTERIAELLRNEIACAL-REDITDPRIG--LTTLTRVDVAPDMSHAVVFWSGLEEPDE 58
>gi|320168459|gb|EFW45358.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 801
Score = 53.8 bits (129), Expect = 8e-06, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 52/121 (42%), Gaps = 16/121 (13%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDV--------ISISEVCMSVDLRVATVYI- 60
RR+ + + A + +I D I + + I V +S D R+A +Y
Sbjct: 652 RRSQMIANALLKATLKII----VHDSRIPAALRQAVEKSQMEIRGVHVSPDYRLAKLYWR 707
Query: 61 --SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
SL D + L N +R + L NL+Y PELRF D++ + +++A++
Sbjct: 708 PTSLSSPAQVDTIRDLLTANTSHLRFAVQEKL-NLKYSPELRFVLDSAEEDVDQVSAILD 766
Query: 119 L 119
Sbjct: 767 R 767
>gi|315452833|ref|YP_004073103.1| ribosome-binding factor A [Helicobacter felis ATCC 49179]
gi|315131885|emb|CBY82513.1| ribosome-binding factor A [Helicobacter felis ATCC 49179]
Length = 114
Score = 53.8 bits (129), Expect = 9e-06, Method: Composition-based stats.
Identities = 22/105 (20%), Positives = 39/105 (37%), Gaps = 11/105 (10%)
Query: 17 EEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI--SLPLDVSPDRVISA 74
E ++ AL + D +S +++++V S A YI S I A
Sbjct: 15 EYLQEALSTL------NDPRLSG--LTLTQVHCSKGKYHAQAYIDGSCLEAEEQKEAIKA 66
Query: 75 LNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
L +R + + + P F D SL++ +L+ L
Sbjct: 67 LKKATPLLRAYVLQVSGWFKC-PHFVFAIDPSLEAQQRLDQLFAR 110
>gi|195355471|ref|XP_002044215.1| GM22594 [Drosophila sechellia]
gi|194129504|gb|EDW51547.1| GM22594 [Drosophila sechellia]
Length = 271
Score = 53.8 bits (129), Expect = 9e-06, Method: Composition-based stats.
Identities = 18/105 (17%), Positives = 42/105 (40%), Gaps = 2/105 (1%)
Query: 2 KNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS 61
K N+RR + + + + ++ D ++ + + IS V ++ D VY
Sbjct: 86 KTTASHNNRRMSVLNKLFMTNITDILATGAVADSIVGQG-VQISYVKITSDFSRINVYWM 144
Query: 62 LPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTS 106
+ + LN ++ + + L + VP+++F D +
Sbjct: 145 GKDGGENQELENTLNRMSGRLQHELSQ-LHLMGEVPKIKFVRDKT 188
>gi|168703015|ref|ZP_02735292.1| hypothetical protein GobsU_26029 [Gemmata obscuriglobus UQM 2246]
Length = 133
Score = 53.4 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/100 (25%), Positives = 42/100 (42%), Gaps = 5/100 (5%)
Query: 3 NKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL 62
N + SR+ ++ +VR AL +D +I S+ V + V +++
Sbjct: 35 NAPKQASRKEKQLCTQVRQALDGAFA--AARDPVIQAT--SVVGVEPAPHSGRLRVLVAV 90
Query: 63 PLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFR 102
P DV + AL F+R + ++ RY PEL F
Sbjct: 91 PPDVIAQHAVEALARAAGFLRSEVAAAISR-RYAPELVFE 129
>gi|18859771|ref|NP_573088.1| CG15916 [Drosophila melanogaster]
gi|18447566|gb|AAL68344.1| RH08992p [Drosophila melanogaster]
gi|22832309|gb|AAF48535.2| CG15916 [Drosophila melanogaster]
gi|220949198|gb|ACL87142.1| CG15916-PA [synthetic construct]
Length = 271
Score = 53.4 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 18/105 (17%), Positives = 41/105 (39%), Gaps = 2/105 (1%)
Query: 2 KNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS 61
K N+RR + + + + ++ D ++ + IS V ++ D VY
Sbjct: 86 KTTCSHNNRRMSVLNKLFMTNITDILATGAVADSIVGHG-VQISYVKITSDFSRINVYWM 144
Query: 62 LPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTS 106
+ + LN ++ + + L + VP+++F D +
Sbjct: 145 GKDGGENQELENTLNRMSGKLQHELSQ-LHLMGEVPKIKFVRDKT 188
>gi|195553741|ref|XP_002076736.1| GD24682 [Drosophila simulans]
gi|194202726|gb|EDX16302.1| GD24682 [Drosophila simulans]
Length = 271
Score = 53.0 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 18/105 (17%), Positives = 42/105 (40%), Gaps = 2/105 (1%)
Query: 2 KNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS 61
K N+RR + + + + ++ D ++ + + IS V ++ D VY
Sbjct: 86 KTTASHNNRRMSVLNKLFMTNITDILATGAVADSIVGQG-VQISYVKITSDFSRINVYWM 144
Query: 62 LPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTS 106
+ + LN ++ + + L + VP+++F D +
Sbjct: 145 GKDGGENQELENTLNRMSGRLQHELSQ-LHLMGEVPKIKFIRDKT 188
>gi|256371442|ref|YP_003109266.1| ribosome-binding factor A [Acidimicrobium ferrooxidans DSM 10331]
gi|256008026|gb|ACU53593.1| ribosome-binding factor A [Acidimicrobium ferrooxidans DSM 10331]
Length = 127
Score = 53.0 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/119 (21%), Positives = 48/119 (40%), Gaps = 7/119 (5%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
M + R RV ++ + + +D ++ + + V +S DLR A V I
Sbjct: 1 MGRRATHPYARTERVAAVLQEVIAEALERLVDRDERLAFVTV--THVVVSSDLRHADVLI 58
Query: 61 SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ + AL+ ++ + R +R L+ P LRF D L + +L A+
Sbjct: 59 A----SGTAETLEALDDARGELQRAVAREVR-LKRTPALRFGLDAQLAAVEELEAVFRR 112
>gi|237843847|ref|XP_002371221.1| hypothetical protein TGME49_098040 [Toxoplasma gondii ME49]
gi|211968885|gb|EEB04081.1| hypothetical protein TGME49_098040 [Toxoplasma gondii ME49]
Length = 322
Score = 53.0 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 42 ISISEVCMSVDLRVATVYISLPLDVSPDRVISA-LNCNIKFIRGRIGRSLRNLRYVPELR 100
+ +++V ++ + VA VY+S+ R+ L + K +R + + +R R +PEL
Sbjct: 209 VDVADVILNQNASVAKVYVSVDGAEQAQRLAQGWLQRSRKMLRYYLSQKMRRRRRIPELF 268
Query: 101 FRY 103
F
Sbjct: 269 FHL 271
>gi|326437493|gb|EGD83063.1| hypothetical protein PTSG_12061 [Salpingoeca sp. ATCC 50818]
Length = 482
Score = 53.0 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/124 (23%), Positives = 53/124 (42%), Gaps = 9/124 (7%)
Query: 2 KNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS 61
K++ + S R RV + + +A+ I + D L+ + I+I +V + R ATVY +
Sbjct: 332 KDERWEGSARYRRVTDAIGTAIEAAIYRHHL-DPLLVKANITIYDVHVKRSFRKATVYWT 390
Query: 62 LPLDVSPD-------RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLN 114
P+ + + +R I SL L++ P L F+ + +L
Sbjct: 391 ATFSEDPELQAEQEAAIAEVFVARTRELRRMIAGSL-PLKHTPALEFKRSMVDEEEARLE 449
Query: 115 ALMC 118
AL+
Sbjct: 450 ALLR 453
>gi|195393514|ref|XP_002055399.1| GJ19347 [Drosophila virilis]
gi|194149909|gb|EDW65600.1| GJ19347 [Drosophila virilis]
Length = 396
Score = 53.0 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/130 (16%), Positives = 54/130 (41%), Gaps = 6/130 (4%)
Query: 2 KNKNPKNSRRALRV---GEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATV 58
K+ +P + R+ + + + ++ E + ++ R + +S V +S D V
Sbjct: 94 KSNSPGSKHNTRRMSVLNKLFMTHITDLLATGEAAESILGRGL-QVSRVKISSDFSCINV 152
Query: 59 YISLPLDVSPDRVISA-LNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
Y ++ D + A L+ +R + + LR + VP ++F D + + + ++
Sbjct: 153 YWLGTGELHNDAQLDANLSRCSGHLRHELSQ-LRLMGEVPRIKFVRDKTGSNINSVEGIL 211
Query: 118 CLPKIPVALE 127
K+ +
Sbjct: 212 RTLKLSQPAD 221
>gi|325114660|emb|CBZ50216.1| conserved hypothetical protein [Neospora caninum Liverpool]
Length = 189
Score = 53.0 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 42 ISISEVCMSVDLRVATVYISLPLDVSPDRVISA-LNCNIKFIRGRIGRSLRNLRYVPELR 100
+ +++V ++ + VA VY+S+ D R+ L + K +R + + ++ R +PEL
Sbjct: 82 VDVADVLLNQNASVAKVYVSVDGDAHAQRLAQGWLQRSRKMLRYYLSQKMKRRRRIPELF 141
Query: 101 FRY 103
F
Sbjct: 142 FHL 144
>gi|83319338|ref|YP_424310.1| ribosome-binding factor A [Mycoplasma capricolum subsp. capricolum
ATCC 27343]
gi|83283224|gb|ABC01156.1| ribosome-binding factor A [Mycoplasma capricolum subsp. capricolum
ATCC 27343]
Length = 117
Score = 53.0 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 6/98 (6%)
Query: 29 NNEFQDRLISRDVISISEVCMSVDLRVATVY---ISLPLDVSPDRVISALNCNIKFIRGR 85
E + ++ IS+ E +S D ++ I + D++ + L N+K IR
Sbjct: 23 QREMKSEVLKS--ISVVETRLSTDNSHVKIFYQFIPIFEDLTIQTIEEELENNLKEIRMI 80
Query: 86 IGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIP 123
+ L R VPEL F YDTSL +++ ++ K
Sbjct: 81 LASKLDW-RTVPELTFVYDTSLDRVNQIDKILKEDKNK 117
>gi|195953704|ref|YP_002121994.1| ribosome-binding factor A [Hydrogenobaculum sp. Y04AAS1]
gi|195933316|gb|ACG58016.1| ribosome-binding factor A [Hydrogenobaculum sp. Y04AAS1]
Length = 95
Score = 52.6 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 12/85 (14%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
Query: 19 VRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCN 78
+ + ++ +D ++++ V +S D + + IS+ + V+ L
Sbjct: 12 IEKEVANIL----IKDIENMPGFVTVNGVLLSEDGKNVLISISVLEKDKEEAVLKRLQSA 67
Query: 79 IKFIRGRIGRSLRNLRYVPELRFRY 103
++IR + + ++ + +P++ F
Sbjct: 68 KEYIRHLLTKKIKT-KSMPKIDFVI 91
>gi|221486679|gb|EEE24940.1| conserved hypothetical protein [Toxoplasma gondii GT1]
Length = 554
Score = 52.6 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 7/96 (7%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQD--RLISRDVISISEV--CMSVDLRVATVYISLPLD 65
RR +R+G +++ L + N ++ +SI V + V VY +L
Sbjct: 400 RRTVRLGRLIQAQLEEFLTWNSPHMLYSVLDGASVSIHHVEQRTTK--SVCYVYYTLTSS 457
Query: 66 VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRF 101
P+ V L R +I R L L Y PE+RF
Sbjct: 458 HDPEDVQRRLERAAPQFRMQIARRL-QLGYTPEIRF 492
>gi|221508435|gb|EEE34022.1| conserved hypothetical protein [Toxoplasma gondii VEG]
Length = 556
Score = 52.6 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 7/96 (7%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQD--RLISRDVISISEV--CMSVDLRVATVYISLPLD 65
RR +R+G +++ L + N ++ +SI V + V VY +L
Sbjct: 402 RRTVRLGRLIQAQLEEFLTWNSPHMLYSVLDGAAVSIHHVEQRTTK--SVCYVYYTLTSS 459
Query: 66 VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRF 101
P+ V L R +I R L L Y PE+RF
Sbjct: 460 HDPEDVQRRLERAAPQFRMQIARRL-QLGYTPEIRF 494
>gi|237834313|ref|XP_002366454.1| hypothetical protein, conserved [Toxoplasma gondii ME49]
gi|211964118|gb|EEA99313.1| hypothetical protein, conserved [Toxoplasma gondii ME49]
Length = 547
Score = 52.3 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 7/96 (7%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQD--RLISRDVISISEV--CMSVDLRVATVYISLPLD 65
RR +R+G +++ L + N ++ +SI V + V VY +L
Sbjct: 393 RRTVRLGRLIQAQLEEFLTWNSPHMLYSVLDGAAVSIHHVEQRTTK--SVCYVYYTLTSS 450
Query: 66 VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRF 101
P+ V L R +I R L L Y PE+RF
Sbjct: 451 HDPEDVQRRLERAAPQFRMQIARRL-QLGYTPEIRF 485
>gi|313665224|ref|YP_004047095.1| ribosome-binding factor A [Mycoplasma leachii PG50]
gi|312949406|gb|ADR24002.1| ribosome-binding factor A [Mycoplasma leachii PG50]
Length = 117
Score = 51.9 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 6/96 (6%)
Query: 29 NNEFQDRLISRDVISISEVCMSVDLRVATVY---ISLPLDVSPDRVISALNCNIKFIRGR 85
E + ++ IS+ E +S D ++ I + D++ + L N+K IR
Sbjct: 23 QREMKSEILKS--ISVVETRLSTDNSHVKIFYQFIPIFEDLTIQTIEEELENNLKEIRMI 80
Query: 86 IGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+ L R VPEL F YD SL +++ ++ K
Sbjct: 81 LASKLDW-RTVPELTFVYDNSLDRVNQIDKILKEEK 115
>gi|289571026|ref|ZP_06451253.1| ribosome-binding factor A rbfA [Mycobacterium tuberculosis T17]
gi|289544780|gb|EFD48428.1| ribosome-binding factor A rbfA [Mycobacterium tuberculosis T17]
Length = 143
Score = 51.9 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 6/72 (8%)
Query: 49 MSVDLRVATVYISLPLDVSPDR-----VISALNCNIKFIRGRIGRSLRNLRYVPELRFRY 103
M+ DL ATVY ++ D +AL +R ++G + +R+ P L F
Sbjct: 1 MTADLHDATVYYTVMGRTLHDEPNCAGAAAALERAKGVLRTKVG-AGTGVRFTPTLTFTL 59
Query: 104 DTSLQSYWKLNA 115
DT S +++
Sbjct: 60 DTISDSVHRMDE 71
>gi|71894106|ref|YP_278214.1| ribosome-binding factor A [Mycoplasma synoviae 53]
gi|71850894|gb|AAZ43503.1| ribosome-binding factor A [Mycoplasma synoviae 53]
Length = 111
Score = 51.5 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 16/80 (20%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Query: 42 ISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRF 101
+ + +V +S DL V++ + + + + + ALN + ++ + ++L R VP + F
Sbjct: 33 VVVMDVKLSNDLSHVKVFVVV--ESNVQKTLIALNNSAPAVKRILSKTLTW-RKVPTVTF 89
Query: 102 RYDTSLQSYWKLNALMCLPK 121
D K+ ++ K
Sbjct: 90 VLDAHTAQTEKIEKILQEIK 109
>gi|72080911|ref|YP_287969.1| ribosome-binding factor A [Mycoplasma hyopneumoniae 7448]
gi|71914035|gb|AAZ53946.1| ribosome-binding factor A [Mycoplasma hyopneumoniae 7448]
Length = 109
Score = 51.5 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Query: 37 ISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYV 96
+ R +S++ V +S D VY+ + ++ + KFIR + G L + V
Sbjct: 25 LERMPVSVNWVRLSADNSHLFVYLEFQFSQKKN--LAKIIKAEKFIRLKFGNLLEGFK-V 81
Query: 97 PELRFRYDTSLQSYWKLNALMC 118
P+L F D ++ K++ +
Sbjct: 82 PQLHFLLDPVVERVEKIDKIFS 103
>gi|262340820|ref|YP_003283675.1| putative ribosome-binding factor A [Blattabacterium sp. (Blattella
germanica) str. Bge]
gi|262272157|gb|ACY40065.1| putative ribosome-binding factor A [Blattabacterium sp. (Blattella
germanica) str. Bge]
Length = 106
Score = 51.5 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 18/99 (18%), Positives = 46/99 (46%), Gaps = 6/99 (6%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRD---VISISEVCMSVDLRVATVYISLP 63
N R ++ + ++ N E +++ + ++++ +VC++ D+ VYIS+
Sbjct: 4 MNFIRNEKLSSMFSIEIAEIL-NEEIRNKRNKNNEKFLVTLIKVCINTDMNFMKVYISIY 62
Query: 64 LDVSPDRVISALNCNIKFIRGRIGRSLR-NLRYVPELRF 101
+ ++ + F R + + LR ++ +P+L F
Sbjct: 63 PSFNKK-ILEFIRSKSGFYRKLLSQRLRYRVKKIPKLDF 100
>gi|71028300|ref|XP_763793.1| hypothetical protein [Theileria parva strain Muguga]
gi|68350747|gb|EAN31510.1| hypothetical protein TP04_0158 [Theileria parva]
Length = 566
Score = 51.5 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 16/95 (16%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV-SP 68
+R LR+G + L+ IS+ EV ++ D A +YI + D
Sbjct: 432 QRGLRIGNNISPELI---------------HGISVMEVKLNSDCTHADIYILVSGDSFQQ 476
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRY 103
+ S LN N K +R +G+ L+ + VP + F
Sbjct: 477 RQCYSWLNRNSKRLRYLMGQMLKYRKNVPTINFHP 511
>gi|297517608|ref|ZP_06935994.1| ribosome-binding factor A [Escherichia coli OP50]
Length = 54
Score = 51.1 bits (122), Expect = 4e-05, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 83 RGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALEK 128
R +G+++R LR VPEL F YD SL +++ L+ + E+
Sbjct: 1 RSLLGKAMR-LRIVPELTFFYDNSLVEGMRMSNLVTS-VVKHDEER 44
>gi|114777561|ref|ZP_01452542.1| hypothetical protein SPV1_07636 [Mariprofundus ferrooxydans PV-1]
gi|114552032|gb|EAU54549.1| hypothetical protein SPV1_07636 [Mariprofundus ferrooxydans PV-1]
Length = 114
Score = 50.7 bits (121), Expect = 6e-05, Method: Composition-based stats.
Identities = 25/123 (20%), Positives = 51/123 (41%), Gaps = 9/123 (7%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
M+N + R +V+ L +++ + D S +SI+ V S +V TV++
Sbjct: 1 MRNMSAT----QQRFLTDVQRLLSTLLIR-DVADPRFSG--VSITRVERSG-RQVMTVWV 52
Query: 61 SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLP 120
D + AL + R+L R +P+L+ R+D + + + ++
Sbjct: 53 YRGGDCDEQACMQALEKMTPHFEHELRRALPKYR-LPKLKLRWDKNFEKSGDVLQMLRDL 111
Query: 121 KIP 123
+ P
Sbjct: 112 ERP 114
>gi|325118530|emb|CBZ54081.1| conserved hypothetical protein [Neospora caninum Liverpool]
Length = 374
Score = 50.7 bits (121), Expect = 6e-05, Method: Composition-based stats.
Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 7/96 (7%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQD--RLISRDVISISEV--CMSVDLRVATVYISLPLD 65
RR +R+G +++ L + N ++ +SI V + V VY +L
Sbjct: 217 RRTVRLGRLIQAQLEEFLTWNSPHMLYSVLDGASVSIHHVEQRTTK--SVCFVYYTLTSS 274
Query: 66 VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRF 101
P+ + L R +I R L L Y PE+RF
Sbjct: 275 HDPEDIQRRLEQAAPQFRMQIARRL-QLGYTPEIRF 309
>gi|224438170|ref|ZP_03659105.1| ribosome-binding factor A [Helicobacter cinaedi CCUG 18818]
gi|313144615|ref|ZP_07806808.1| ribosome-binding factor A [Helicobacter cinaedi CCUG 18818]
gi|313129646|gb|EFR47263.1| ribosome-binding factor A [Helicobacter cinaedi CCUG 18818]
Length = 119
Score = 50.7 bits (121), Expect = 7e-05, Method: Composition-based stats.
Identities = 23/112 (20%), Positives = 43/112 (38%), Gaps = 7/112 (6%)
Query: 12 ALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI--SLPLDVSPD 69
R ++ L + QD I+ +I+ V S + A VYI +
Sbjct: 5 QQRTESLLQEVLSLALSQ--LQDPQINTLIIT--GVKCSKGKQSAEVYIEGTDISPNERK 60
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
++ L ++ I S + R P L F++D +L S L+++ +
Sbjct: 61 TILEQLKKAQGILKEYILNSTQWFR-SPNLIFKFDDTLHSANNLDSIFAQLE 111
>gi|118781769|ref|XP_001238813.1| AGAP003024-PB [Anopheles gambiae str. PEST]
gi|118781771|ref|XP_001238814.1| AGAP003024-PC [Anopheles gambiae str. PEST]
gi|118781775|ref|XP_001237397.1| AGAP003024-PA [Anopheles gambiae str. PEST]
gi|116129248|gb|EAU77045.1| AGAP003024-PB [Anopheles gambiae str. PEST]
gi|116129249|gb|EAU77046.1| AGAP003024-PC [Anopheles gambiae str. PEST]
gi|116129251|gb|EAU77048.1| AGAP003024-PA [Anopheles gambiae str. PEST]
Length = 263
Score = 50.7 bits (121), Expect = 7e-05, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 50/121 (41%), Gaps = 12/121 (9%)
Query: 2 KNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI- 60
K + +++RR + + + ++ F L I IS V ++ D R A++Y
Sbjct: 62 KRQGKESNRRVAVLNKLFMKNITDLMATGSFASDLYGYG-IQISRVRVAPDFREASIYWF 120
Query: 61 --SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+L DV D ++ L IR + + LR + VP+L F D + L+
Sbjct: 121 STNLNRDVKIDGILKPLCSR---IRHELSQ-LRLMGEVPQLTFVQDKRY----YVEGLLN 172
Query: 119 L 119
Sbjct: 173 S 173
>gi|118781773|ref|XP_001237396.1| AGAP003024-PD [Anopheles gambiae str. PEST]
gi|116129250|gb|EAU77047.1| AGAP003024-PD [Anopheles gambiae str. PEST]
Length = 167
Score = 50.7 bits (121), Expect = 7e-05, Method: Composition-based stats.
Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 8/106 (7%)
Query: 2 KNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI- 60
K + +++RR + + + ++ F L I IS V ++ D R A++Y
Sbjct: 62 KRQGKESNRRVAVLNKLFMKNITDLMATGSFASDLYGYG-IQISRVRVAPDFREASIYWF 120
Query: 61 --SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYD 104
+L DV D ++ L IR + + LR + VP+L F D
Sbjct: 121 STNLNRDVKIDGILKPLCSR---IRHELSQ-LRLMGEVPQLTFVQD 162
>gi|54020613|ref|YP_116108.1| ribosome-binding factor A [Mycoplasma hyopneumoniae 232]
gi|71893933|ref|YP_279379.1| ribosome-binding factor A [Mycoplasma hyopneumoniae J]
gi|53987786|gb|AAV27987.1| ribosomal binding factor A [Mycoplasma hyopneumoniae 232]
gi|71852060|gb|AAZ44668.1| ribosome-binding factor A [Mycoplasma hyopneumoniae J]
Length = 109
Score = 50.3 bits (120), Expect = 8e-05, Method: Composition-based stats.
Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Query: 37 ISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYV 96
+ R +S++ V +S D VY+ + ++ + KFIR + G L + V
Sbjct: 25 LERMPVSVNWVRLSADNSHLFVYLEFQFSQRKN--LAKIIKAEKFIRLKFGNLLEGFK-V 81
Query: 97 PELRFRYDTSLQSYWKLNALMC 118
P+L F D ++ K++ +
Sbjct: 82 PQLHFLLDPVVERVEKIDKIFS 103
>gi|301770001|ref|XP_002920419.1| PREDICTED: putative ribosome-binding factor A, mitochondrial-like
[Ailuropoda melanoleuca]
Length = 426
Score = 50.3 bits (120), Expect = 8e-05, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 50/135 (37%), Gaps = 9/135 (6%)
Query: 1 MKNKNPKNSRRALRV-----GEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRV 55
+K + +RR V + AL ++ E + I + +S+V ++ D
Sbjct: 35 LKKSTSEKTRRDDHVRLRALNGLLYKALTDLLCTPEVS-QEICDLNVQLSKVSLTPDFST 93
Query: 56 ATVYISLPLDVSPDR-VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLN 114
VY + + + L + +R + + LR VP + F D + +++
Sbjct: 94 CRVYWKTTVSAEQNAHTEAVLRRSAAHMRHLLMSQ-QTLRNVPPIVFIQDKGNAALAEVD 152
Query: 115 ALMCLPKI-PVALEK 128
L+ P ++
Sbjct: 153 RLLASADFGPPDEKE 167
>gi|109947688|ref|YP_664916.1| ribosome-binding factor A [Helicobacter acinonychis str. Sheeba]
gi|123362594|sp|Q17WQ9|RBFA_HELAH RecName: Full=Ribosome-binding factor A
gi|109714909|emb|CAJ99917.1| rbfA [Helicobacter acinonychis str. Sheeba]
Length = 111
Score = 50.3 bits (120), Expect = 9e-05, Method: Composition-based stats.
Identities = 21/102 (20%), Positives = 44/102 (43%), Gaps = 13/102 (12%)
Query: 17 EEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALN 76
E ++ AL + D ++ +S+++V S A V++ +++S L
Sbjct: 14 ELLQEALSSL------NDSELNS--LSVTKVECSKGKHHAFVFVL----SQDHKILSKLK 61
Query: 77 CNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
IR + ++ + P+L F D SL+ +L+A+
Sbjct: 62 KAEGLIRQFVLQASGWFKC-PKLSFILDNSLEKQLRLDAIFN 102
>gi|289742775|gb|ADD20135.1| uncharacterized protein [Glossina morsitans morsitans]
Length = 377
Score = 50.3 bits (120), Expect = 9e-05, Method: Composition-based stats.
Identities = 20/111 (18%), Positives = 48/111 (43%), Gaps = 3/111 (2%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPD 69
RR + + + ++ E + ++ + + IS V +S D +VY D+ D
Sbjct: 85 RRMAVLNKLFMEYITDLMATGEISETVLGKSL-QISRVKISPDFGFISVYWITTGDMIRD 143
Query: 70 RVIS-ALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
++ L +R ++ + L + VP ++F D + +++ A++
Sbjct: 144 AMLEMELKQCSGVLRHQLSQ-LDLMGVVPRIKFVXDKLCNNMFEVEAILKT 193
>gi|149015930|gb|EDL75237.1| rCG20569, isoform CRA_b [Rattus norvegicus]
Length = 345
Score = 50.3 bits (120), Expect = 9e-05, Method: Composition-based stats.
Identities = 19/119 (15%), Positives = 48/119 (40%), Gaps = 3/119 (2%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
+K +++ R + + +L ++ E + + + +S+V ++ D VY
Sbjct: 84 LKKTRKEDTIRLRVLNGLLHKSLTELLCTPEVS-QEVYDLNVELSKVSVTPDFSACRVYW 142
Query: 61 SLPLDVSPDR-VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ +R + L + ++R + + LR VP + F D +++ L+
Sbjct: 143 KTGVSAEQNRHTEAVLQRSATYMRHLLISQ-QTLRNVPPIVFVQDKRDIVLAEVDRLLA 200
>gi|322378932|ref|ZP_08053346.1| ribosome-binding factor A [Helicobacter suis HS1]
gi|322379786|ref|ZP_08054083.1| ribosome-binding factor A [Helicobacter suis HS5]
gi|321147754|gb|EFX42357.1| ribosome-binding factor A [Helicobacter suis HS5]
gi|321148608|gb|EFX43094.1| ribosome-binding factor A [Helicobacter suis HS1]
Length = 112
Score = 50.0 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/108 (20%), Positives = 43/108 (39%), Gaps = 11/108 (10%)
Query: 14 RVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI--SLPLDVSPDRV 71
R+ E ++ AL + +S ++++ V S A +Y+ S +
Sbjct: 11 RLLEYLQEAL------GALDNPELSN--LTLTAVHCSRGKYHAVIYVDGSFIDTKQRGAL 62
Query: 72 ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ AL +R + + + P+L F +DT L+ KL+ L
Sbjct: 63 LKALKKATPILRAHVLQVSGWFKC-PQLAFEFDTQLEQAQKLDDLFAR 109
>gi|240047656|ref|YP_002961044.1| Ribosome-binding factor A [Mycoplasma conjunctivae HRC/581]
gi|239985228|emb|CAT05241.1| Ribosome-binding factor A [Mycoplasma conjunctivae]
Length = 109
Score = 50.0 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 16/97 (16%), Positives = 40/97 (41%), Gaps = 8/97 (8%)
Query: 23 LMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFI 82
+ ++ N ++ ++ V +S D +Y+ + + D + +N KFI
Sbjct: 16 ISEILYQNFAHRFDLN-----VNWVKLSGDYSHLNIYLEF--NENEDFCLEQINKANKFI 68
Query: 83 RGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
R ++ + + VP+L F D + ++ ++
Sbjct: 69 RFKLAKISVGYK-VPQLHFYIDHVSKRVENIDKILSR 104
>gi|208434346|ref|YP_002266012.1| ribosome-binding factorA [Helicobacter pylori G27]
gi|226723603|sp|B5Z6E7|RBFA_HELPG RecName: Full=Ribosome-binding factor A
gi|208432275|gb|ACI27146.1| ribosome-binding factorA [Helicobacter pylori G27]
Length = 111
Score = 50.0 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/79 (22%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Query: 40 DVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPEL 99
+ +S+++V S A V++ S +++S L IR + ++ + P+L
Sbjct: 29 NSLSVTKVECSKGKHHAYVFVL----SSDHKILSKLKKAEGLIRQFVLQASGWFKC-PKL 83
Query: 100 RFRYDTSLQSYWKLNALMC 118
F D SL+ +L+A+
Sbjct: 84 SFVLDNSLEKQLRLDAIFN 102
>gi|317180704|dbj|BAJ58490.1| ribosome-binding factor A [Helicobacter pylori F32]
Length = 111
Score = 49.6 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/79 (22%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Query: 40 DVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPEL 99
+ +S+++V S A V++ +++S L IR + ++ + P+L
Sbjct: 29 NSLSVTKVECSKGKHHAFVFVL----SQDHKILSKLKKAEGLIRQFVLQASGWFKC-PKL 83
Query: 100 RFRYDTSLQSYWKLNALMC 118
F D SL+ +L+AL
Sbjct: 84 SFVLDNSLEKQLRLDALFN 102
>gi|312601662|gb|ADQ90917.1| ribosome-binding factor A [Mycoplasma hyopneumoniae 168]
Length = 82
Score = 49.6 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Query: 42 ISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRF 101
+S++ V +S D VY+ + ++ + KFIR + G L + VP+L F
Sbjct: 3 VSVNWVRLSADNSHLFVYLEFQFSQKKN--LAKIIKAEKFIRLKFGNLLEGFK-VPQLHF 59
Query: 102 RYDTSLQSYWKLNALMC 118
D ++ K++ +
Sbjct: 60 LLDPVVERVEKIDKIFS 76
>gi|332262378|ref|XP_003280238.1| PREDICTED: putative ribosome-binding factor A, mitochondrial
isoform 1 [Nomascus leucogenys]
Length = 336
Score = 49.6 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/118 (20%), Positives = 46/118 (38%), Gaps = 4/118 (3%)
Query: 3 NKNPKNSRRALR-VGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS 61
K K LR + + AL ++ E + + + +S+V ++ D VY
Sbjct: 83 KKTRKEDHVHLRALNGLLYKALTDLLCTPEVS-QELYDLNVELSKVSLTPDFSACRVYWK 141
Query: 62 LPLDVSPDRVISA-LNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
L + + A L + +R + + LR VP + F D + +L+ L+
Sbjct: 142 TMLSAEQNAHMEAVLQRSAAHMRHLLMSQ-QTLRNVPPIVFIQDKGNAALAELDQLLA 198
>gi|157136695|ref|XP_001656879.1| hypothetical protein AaeL_AAEL013615 [Aedes aegypti]
gi|108869887|gb|EAT34112.1| conserved hypothetical protein [Aedes aegypti]
Length = 357
Score = 49.6 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/126 (15%), Positives = 48/126 (38%), Gaps = 2/126 (1%)
Query: 2 KNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS 61
+ + +++RR + + + ++ E+ + ++ I IS V +S D V+
Sbjct: 68 RGQGKESTRRLTVLNKLFMEQITDLMATGEYSEEIVGYG-IQISRVRVSTDFHGVNVFWF 126
Query: 62 LPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+ L +R + + LR + VP+L F D + +++ + +
Sbjct: 127 ASDSAQDMEIGRLLKRVAGGLRHELSQ-LRLIGQVPKLTFVKDKTHGLSADVDSALRIAD 185
Query: 122 IPVALE 127
E
Sbjct: 186 YGEDYE 191
>gi|217031629|ref|ZP_03437134.1| hypothetical protein HPB128_21g187 [Helicobacter pylori B128]
gi|298736660|ref|YP_003729186.1| ribosome-binding factor A [Helicobacter pylori B8]
gi|216946829|gb|EEC25425.1| hypothetical protein HPB128_21g187 [Helicobacter pylori B128]
gi|298355850|emb|CBI66722.1| ribosome-binding factor A [Helicobacter pylori B8]
Length = 111
Score = 49.6 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/79 (22%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Query: 40 DVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPEL 99
+ +S+++V S A V++ S +++S L IR + ++ + P+L
Sbjct: 29 NSLSVTKVECSKGKHHAYVFVL----SSDHKILSKLKKAEGLIRQFVLQASGWFKC-PKL 83
Query: 100 RFRYDTSLQSYWKLNALMC 118
F D SL+ +L+A+
Sbjct: 84 SFVLDNSLEKQLRLDAIFN 102
>gi|307637096|gb|ADN79546.1| ribosome binding factor A [Helicobacter pylori 908]
gi|325995687|gb|ADZ51092.1| Ribosome-binding factor A [Helicobacter pylori 2018]
gi|325997283|gb|ADZ49491.1| Ribosome-binding factor A [Helicobacter pylori 2017]
Length = 111
Score = 49.6 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/79 (22%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Query: 40 DVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPEL 99
+ +S+++V S A V++ S +++S L IR + ++ + P+L
Sbjct: 29 NSLSVTKVECSKGKHHAYVFVL----SSDHKILSKLKKAEGLIRQFVLQASGWFKC-PKL 83
Query: 100 RFRYDTSLQSYWKLNALMC 118
F D SL+ +L+A+
Sbjct: 84 SFVLDNSLEKQLRLDAIFN 102
>gi|170052595|ref|XP_001862293.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167873448|gb|EDS36831.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 339
Score = 49.2 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/118 (18%), Positives = 46/118 (38%), Gaps = 2/118 (1%)
Query: 2 KNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS 61
K + +++RR + + + ++ E + L+ I IS V +S D V+
Sbjct: 66 KGQGKESTRRINVLNKLFMEQITDLMATGEHSEELVGYG-IQISRVKVSSDYHGINVFWF 124
Query: 62 LPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ + L +R + + LR + VP+L F D + L+ ++
Sbjct: 125 ARDNQHDMDIGRLLKRISGGLRHELSQ-LRLIGQVPKLNFVKDKTYGLTADLDGVLRR 181
>gi|20377085|gb|AAM20740.1|AF261073_1 hypothetical p38 protein [Homo sapiens]
Length = 343
Score = 49.2 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/118 (17%), Positives = 45/118 (38%), Gaps = 3/118 (2%)
Query: 2 KNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS 61
K ++ R + + AL ++ E + + + +S+V ++ D Y
Sbjct: 83 KKTRKEDHARLRALNGLLYKALTDLLCTPEVS-QELYDLNVELSKVSLTPDFSACRAYWK 141
Query: 62 LPLDVSPDRVISA-LNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
L + + A L + +R + + LR VP + F D + +L+ L+
Sbjct: 142 TTLSAEQNAHMEAVLQRSAAHMRHLLMSQ-QTLRNVPPIVFVQDKGNAALAELDQLLA 198
>gi|317013843|gb|ADU81279.1| ribosome-binding factor A [Helicobacter pylori Gambia94/24]
Length = 111
Score = 49.2 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/79 (22%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Query: 40 DVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPEL 99
+ +S+++V S A V++ S +++S L IR + ++ + P+L
Sbjct: 29 NSLSVTKVECSKGKHHAYVFVL----SSDHKILSKLKKAEGLIRQFVLQASGWFKC-PKL 83
Query: 100 RFRYDTSLQSYWKLNALMC 118
F D SL+ +L+A+
Sbjct: 84 SFVLDNSLEKQLRLDAIFN 102
>gi|82753927|ref|XP_727873.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
gi|23483937|gb|EAA19438.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 201
Score = 49.2 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/110 (25%), Positives = 48/110 (43%), Gaps = 9/110 (8%)
Query: 2 KNKNPKNSRRALRVGEEVRSALMWVILNNEFQ-------DRLISRDVISISEVCMSVDLR 54
K + P++ R +E+++AL +I + D I I+I V +S D
Sbjct: 51 KKETPRHEIYRKRFEKEIKNALQSIIYKKGIKFNYKYHIDEDIIEG-ITIHNVQLSPDCS 109
Query: 55 VATVYISLPLD-VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRY 103
VA V I + D V + + N K IR ++ +++ + VP L F
Sbjct: 110 VAKVIIEIMGDSVDSRQGYIWIKKNCKHIRYKLAELIKHRKRVPFLNFVL 159
>gi|32266339|ref|NP_860371.1| ribosome-binding factor A [Helicobacter hepaticus ATCC 51449]
gi|32262389|gb|AAP77437.1| ribosome-binding factor A [Helicobacter hepaticus ATCC 51449]
Length = 116
Score = 49.2 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/110 (19%), Positives = 42/110 (38%), Gaps = 7/110 (6%)
Query: 12 ALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI--SLPLDVSPD 69
R+ ++ L + D I+ +SI+ V S + A VYI +
Sbjct: 5 QQRLESLLQEILSEALSQ--LNDAQINT--LSITGVKCSKGKQSAEVYIEGTDIPPQERK 60
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+++ L+ ++ + S + R P F++D SL L+ +
Sbjct: 61 VILTRLHKAQGILKEYVLTSTQWFR-SPNFSFKFDDSLCYANTLDTIFEQ 109
>gi|317012239|gb|ADU82847.1| ribosome-binding factor A [Helicobacter pylori Lithuania75]
Length = 111
Score = 49.2 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/79 (21%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Query: 40 DVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPEL 99
+ +S+++V S A V++ +++S L IR + ++ + P+L
Sbjct: 29 NSLSVTKVECSKGKHHAYVFVL----SQDHKILSKLKKAEGLIRQFVLQASGWFKC-PKL 83
Query: 100 RFRYDTSLQSYWKLNALMC 118
F D SL+ +L+A+
Sbjct: 84 SFVLDNSLEKQLRLDAIFN 102
>gi|10437229|dbj|BAB15022.1| unnamed protein product [Homo sapiens]
gi|15559680|gb|AAH14195.1| Chromosome 18 open reading frame 22 [Homo sapiens]
gi|312150448|gb|ADQ31736.1| chromosome 18 open reading frame 22 [synthetic construct]
Length = 343
Score = 49.2 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/118 (17%), Positives = 45/118 (38%), Gaps = 3/118 (2%)
Query: 2 KNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS 61
K ++ R + + AL ++ E + + + +S+V ++ D Y
Sbjct: 83 KKTRKEDHARLRALNGLLYKALTDLLCTPEVS-QELYDLNVELSKVSLTPDFSACRAYWK 141
Query: 62 LPLDVSPDRVISA-LNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
L + + A L + +R + + LR VP + F D + +L+ L+
Sbjct: 142 TTLSAEQNAHMEAVLQRSAAHMRHLLMSQ-QTLRNVPPIVFVQDKGNAALAELDQLLA 198
>gi|285394828|ref|NP_079081.2| putative ribosome-binding factor A, mitochondrial isoform 1
precursor [Homo sapiens]
gi|146334837|sp|Q8N0V3|RBFAL_HUMAN RecName: Full=Putative ribosome-binding factor A, mitochondrial;
Flags: Precursor
gi|119587048|gb|EAW66644.1| chromosome 18 open reading frame 22, isoform CRA_c [Homo sapiens]
Length = 343
Score = 49.2 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/118 (17%), Positives = 45/118 (38%), Gaps = 3/118 (2%)
Query: 2 KNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS 61
K ++ R + + AL ++ E + + + +S+V ++ D Y
Sbjct: 83 KKTRKEDHARLRALNGLLYKALTDLLCTPEVS-QELYDLNVELSKVSLTPDFSACRAYWK 141
Query: 62 LPLDVSPDRVISA-LNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
L + + A L + +R + + LR VP + F D + +L+ L+
Sbjct: 142 TTLSAEQNAHMEAVLQRSAAHMRHLLMSQ-QTLRNVPPIVFVQDKGNAALAELDQLLA 198
>gi|224003405|ref|XP_002291374.1| hypothetical protein THAPSDRAFT_262775 [Thalassiosira pseudonana
CCMP1335]
gi|220973150|gb|EED91481.1| hypothetical protein THAPSDRAFT_262775 [Thalassiosira pseudonana
CCMP1335]
Length = 97
Score = 49.2 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
Query: 42 ISISEVCMSVDLRVATVYISLPLDVSP-DRVISA------LNCNIKFIRGRIGRSLRNLR 94
I+I +S DLR A V +S+ + VI+ L N K IR + + +++++
Sbjct: 9 INIVHADVSPDLRQARVTVSVMAGKDKMEDVIAKRRAYAWLVQNTKSIRHSLAQRMKHMK 68
Query: 95 YVPELRFR 102
P++ F
Sbjct: 69 ASPDVTFV 76
>gi|35505312|gb|AAH57772.1| Chromosome 18 open reading frame 22 [Homo sapiens]
Length = 343
Score = 49.2 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/118 (17%), Positives = 45/118 (38%), Gaps = 3/118 (2%)
Query: 2 KNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS 61
K ++ R + + AL ++ E + + + +S+V ++ D Y
Sbjct: 83 KKTRKEDHARLRALNGLLYKALTDLLCTPEVS-QELYDLNVELSKVSLTPDFSACRAYWK 141
Query: 62 LPLDVSPDRVISA-LNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
L + + A L + +R + + LR VP + F D + +L+ L+
Sbjct: 142 TTLSAEQNAHMEAVLQRSAAHMRHLLMSQ-QTLRNVPPIVFVQDKGNAALAELDQLLA 198
>gi|194894115|ref|XP_001978011.1| GG17927 [Drosophila erecta]
gi|190649660|gb|EDV46938.1| GG17927 [Drosophila erecta]
Length = 177
Score = 49.2 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 15/101 (14%), Positives = 39/101 (38%), Gaps = 2/101 (1%)
Query: 23 LMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFI 82
+ ++ D ++ + + IS V ++ D VY + LN +
Sbjct: 12 ITDILATGAVADSIVGQG-VQISYVKITSDFSRINVYWMGKDGGENQELEDTLNRISGRL 70
Query: 83 RGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIP 123
+ + + L + VP+++F D + ++ ++ +I
Sbjct: 71 QHELSQ-LHLMGEVPKIKFVRDKTSTGLHQVQEVLSRIEIQ 110
>gi|194748657|ref|XP_001956761.1| GF10091 [Drosophila ananassae]
gi|190624043|gb|EDV39567.1| GF10091 [Drosophila ananassae]
Length = 287
Score = 48.8 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/115 (17%), Positives = 48/115 (41%), Gaps = 3/115 (2%)
Query: 5 NPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL 64
+ N+RR + + + + + +E + ++ R + +S V ++ D VY
Sbjct: 83 SKSNNRRISVLNKLFMTNITDFLATSEISESIVGRGM-QVSYVNITRDFSQVNVYWMGQG 141
Query: 65 DVSPDRVIS-ALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
D ++ + L ++ + + LR + VP +RF D + ++ L+
Sbjct: 142 DEVANQALEQELFRCSGQLQHELSQ-LRLMGEVPRIRFHRDKTGIHLHQVQDLLS 195
>gi|321310944|ref|YP_004193273.1| ribosome-binding factor A [Mycoplasma haemofelis str. Langford 1]
gi|319802788|emb|CBY93434.1| ribosome-binding factor A [Mycoplasma haemofelis str. Langford 1]
Length = 117
Score = 48.8 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 3/90 (3%)
Query: 28 LNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIG 87
L E +D + R ++I+ V ++ + AT+Y L +P +S LN F + +
Sbjct: 21 LQEELEDPIFKR--VAINFVKVNRNKTYATIYCDLVNHSNPSLALSRLNRLNAFFKQFLS 78
Query: 88 RSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
L R VP L+F D ++ L+
Sbjct: 79 GYLGRYR-VPNLKFVSDEEFYKANRVENLI 107
>gi|312371982|gb|EFR20035.1| hypothetical protein AND_20706 [Anopheles darlingi]
Length = 249
Score = 48.8 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/105 (23%), Positives = 46/105 (43%), Gaps = 8/105 (7%)
Query: 3 NKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI-- 60
+ +++RR + + + ++ F L + IS V ++ D R A++Y
Sbjct: 52 RQGKESNRRVAVLNKLFMKNITDLMATGTFASDLYGYGL-QISRVRVAPDFREASIYWFS 110
Query: 61 -SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYD 104
SL DV + ++ L +R + + LR + VP LRF D
Sbjct: 111 SSLDKDVKIETILKPL---SFRLRHELSQ-LRLVGEVPHLRFVQD 151
>gi|156550921|ref|XP_001603020.1| PREDICTED: similar to conserved hypothetical protein [Nasonia
vitripennis]
Length = 338
Score = 48.8 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 19/104 (18%), Positives = 43/104 (41%), Gaps = 6/104 (5%)
Query: 3 NKNPKNSRRALRV---GEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVY 59
+K K + + RV + + ++ + E +LI R I +S V ++ D ++ V+
Sbjct: 55 SKTSKTTHKNRRVTVLNKVFMKYITDLMASGEVAAQLIGRG-IEVSHVSVTPDFKLVNVF 113
Query: 60 ISLPLDVSPDR-VISALNCNIKFIRGRIGRSLRNLRYVPELRFR 102
++ + L ++ + + LR + VP + F
Sbjct: 114 WFAQNEIDANESTERILKRAAGQLQHELSQ-LRVIGIVPPINFV 156
>gi|209735224|gb|ACI68481.1| ribosome-binding factor A, mitochondrial precursor [Salmo salar]
Length = 355
Score = 48.8 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/117 (19%), Positives = 49/117 (41%), Gaps = 3/117 (2%)
Query: 2 KNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI- 60
K ++ ++ R + + A+ ++ + E + + + IS V + D VY
Sbjct: 106 KKQSQGDNMRTRVLNSILYKAITDLLSSPEV-NYEVYNYSVDISRVSLPADFSSCRVYWK 164
Query: 61 SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ + D++ AL+ + IR I + + L VP L F D + ++ L+
Sbjct: 165 TSGVSERDDQIQQALDKSSPRIRYLI-MAHQTLGGVPPLVFIKDKQYAAMSEVENLL 220
>gi|317009045|gb|ADU79625.1| ribosome-binding factor A [Helicobacter pylori India7]
Length = 111
Score = 48.8 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/79 (21%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Query: 40 DVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPEL 99
+ +S+++V S A V++ +++S L IR + ++ + P+L
Sbjct: 29 NSLSVTKVECSKGKHHALVFVL----SQDHKILSKLKKAQGLIRQFVLQASGWFKC-PKL 83
Query: 100 RFRYDTSLQSYWKLNALMC 118
F D SL+ +L+A+
Sbjct: 84 SFVLDNSLEKQLRLDAIFN 102
>gi|210134595|ref|YP_002301034.1| ribosome-binding factor A [Helicobacter pylori P12]
gi|226723602|sp|B6JKX6|RBFA_HELP2 RecName: Full=Ribosome-binding factor A
gi|210132563|gb|ACJ07554.1| ribosome-binding factor A [Helicobacter pylori P12]
Length = 111
Score = 48.4 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 18/79 (22%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Query: 40 DVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPEL 99
+ +S+++V S A V++ S +++S L IR + ++ + P+L
Sbjct: 29 NSLSVTKVECSKGKHHALVFVL----SSDHKILSKLKKAEGLIRQFVLQASGWFKC-PKL 83
Query: 100 RFRYDTSLQSYWKLNALMC 118
F D SL+ +L+A+
Sbjct: 84 SFVLDNSLEKQLRLDAIFN 102
>gi|254779090|ref|YP_003057195.1| ribosome-binding factor A [Helicobacter pylori B38]
gi|254001001|emb|CAX28945.1| Ribosome-binding factor A [Helicobacter pylori B38]
Length = 111
Score = 48.4 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 18/79 (22%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Query: 40 DVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPEL 99
+ +S+++V S A V++ S +++S L IR + ++ + P+L
Sbjct: 29 NSLSVTKVECSKGKHHALVFVL----SSDHKILSKLKKAEGLIRQFVLQASGWFKC-PKL 83
Query: 100 RFRYDTSLQSYWKLNALMC 118
F D SL+ +L+A+
Sbjct: 84 SFVLDDSLEKQLRLDAIFN 102
>gi|281349239|gb|EFB24823.1| hypothetical protein PANDA_009155 [Ailuropoda melanoleuca]
Length = 232
Score = 48.4 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 50/135 (37%), Gaps = 9/135 (6%)
Query: 1 MKNKNPKNSRRALRV-----GEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRV 55
+K + +RR V + AL ++ E + I + +S+V ++ D
Sbjct: 9 LKKSTSEKTRRDDHVRLRALNGLLYKALTDLLCTPEVS-QEICDLNVQLSKVSLTPDFST 67
Query: 56 ATVYISLPLDVSPDR-VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLN 114
VY + + + L + +R + + LR VP + F D + +++
Sbjct: 68 CRVYWKTTVSAEQNAHTEAVLRRSAAHMRHLLMSQ-QTLRNVPPIVFIQDKGNAALAEVD 126
Query: 115 ALMCLPKI-PVALEK 128
L+ P ++
Sbjct: 127 RLLASADFGPPDEKE 141
>gi|217033306|ref|ZP_03438737.1| hypothetical protein HP9810_9g59 [Helicobacter pylori 98-10]
gi|216944247|gb|EEC23672.1| hypothetical protein HP9810_9g59 [Helicobacter pylori 98-10]
Length = 111
Score = 48.4 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/79 (21%), Positives = 35/79 (44%), Gaps = 5/79 (6%)
Query: 40 DVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPEL 99
+ +S+++V S A V++ +++S L IR + ++ + P+L
Sbjct: 29 NSLSVTKVECSKGKHHAFVFVL----SQDHKILSKLKKAEGLIRQFVLQASGWFKC-PKL 83
Query: 100 RFRYDTSLQSYWKLNALMC 118
F D SL+ L+A+
Sbjct: 84 SFVLDNSLEKQLHLDAIFN 102
>gi|297275558|ref|XP_001089856.2| PREDICTED: putative ribosome-binding factor A, mitochondrial-like
isoform 1 [Macaca mulatta]
Length = 343
Score = 48.4 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 21/118 (17%), Positives = 46/118 (38%), Gaps = 3/118 (2%)
Query: 2 KNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS 61
K ++ R + + AL ++ E + + + +S+V ++ D VY
Sbjct: 83 KKTRKEDHVRVRALNGLLYKALTDLLCTPEVS-QELYDLNVELSKVSLTPDFSACRVYWK 141
Query: 62 LPLDVSPDRVISA-LNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
L + + A L + +R + + +R VP + F D + +L+ L+
Sbjct: 142 TTLSAEQNAHMEAVLQRSAASMRHLLMSQ-QTVRNVPPIVFVKDKKSAALAELDKLLA 198
>gi|15611446|ref|NP_223097.1| ribosome-binding factor A [Helicobacter pylori J99]
gi|308184202|ref|YP_003928335.1| ribosome-binding factor A [Helicobacter pylori SJM180]
gi|20978667|sp|Q9ZM45|RBFA_HELPJ RecName: Full=Ribosome-binding factor A
gi|4154898|gb|AAD05947.1| putative RIBOSOME-BINDING FACTOR A [Helicobacter pylori J99]
gi|308060122|gb|ADO02018.1| ribosome-binding factor A [Helicobacter pylori SJM180]
Length = 111
Score = 48.0 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 18/79 (22%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Query: 40 DVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPEL 99
+ +S+++V S A V++ S +++S L IR + ++ + P+L
Sbjct: 29 NSLSVTKVECSKGKHHALVFVL----SSDHKILSKLKKAEGLIRQFVLQASGWFKC-PKL 83
Query: 100 RFRYDTSLQSYWKLNALMC 118
F D SL+ +L+A+
Sbjct: 84 SFVLDDSLEKQLRLDAIFN 102
>gi|261837833|gb|ACX97599.1| ribosome-binding factor A [Helicobacter pylori 51]
gi|261839248|gb|ACX99013.1| ribosome-binding factor A [Helicobacter pylori 52]
gi|297379621|gb|ADI34508.1| ribosome-binding factor A [Helicobacter pylori v225d]
gi|308061752|gb|ADO03640.1| ribosome-binding factor A [Helicobacter pylori Cuz20]
gi|308063262|gb|ADO05149.1| ribosome-binding factor A [Helicobacter pylori Sat464]
gi|317177212|dbj|BAJ55001.1| ribosome-binding factor A [Helicobacter pylori F16]
gi|317179206|dbj|BAJ56994.1| ribosome-binding factor A [Helicobacter pylori F30]
gi|332673247|gb|AEE70064.1| ribosome-binding factor A [Helicobacter pylori 83]
Length = 111
Score = 48.0 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 17/79 (21%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Query: 40 DVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPEL 99
+ +S+++V S A V++ +++S L IR + ++ + P+L
Sbjct: 29 NSLSVTKVECSKGKHHAFVFVL----SQDHKILSKLKKAEGLIRQFVLQASGWFKC-PKL 83
Query: 100 RFRYDTSLQSYWKLNALMC 118
F D SL+ +L+A+
Sbjct: 84 SFVLDNSLEKQLRLDAIFN 102
>gi|296222923|ref|XP_002757407.1| PREDICTED: putative ribosome-binding factor A, mitochondrial-like
[Callithrix jacchus]
Length = 343
Score = 48.0 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 22/123 (17%), Positives = 49/123 (39%), Gaps = 7/123 (5%)
Query: 1 MKNKNPKNSR----RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVA 56
M++ + K + R + + AL ++ E + + + +S+V ++ D
Sbjct: 78 MRSTSQKTRKEDHVRLRALNGLLYKALTDLLCTPEVS-QELYDLNVELSKVSLTPDFSAC 136
Query: 57 TVYISLPLDVSPD-RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNA 115
VY L + R + L + +R + + LR VP + F D + +++
Sbjct: 137 RVYWKTTLSAEQNVRTETVLQKSAAHMRHLLMSQ-QTLRNVPPIVFVKDKQSAALAEIDQ 195
Query: 116 LMC 118
L+
Sbjct: 196 LLA 198
>gi|126322159|ref|XP_001375149.1| PREDICTED: similar to Chromosome 18 open reading frame 22
[Monodelphis domestica]
Length = 391
Score = 48.0 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 26/118 (22%), Positives = 47/118 (39%), Gaps = 5/118 (4%)
Query: 2 KNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS 61
K ++S R + + AL ++ E ++ I + S+V ++ D VY
Sbjct: 112 KKTRKEDSIRKRALDGILYQALSDLMCTFEV-NQDIYDLNVEFSKVSLAPDFSACRVYWK 170
Query: 62 LPLDVSPDRVISA-LNCNIKFIRGRI-GRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
L + I A L + IR + + LR VP + F D + ++N L+
Sbjct: 171 TSLSAEQNDHIEAVLQKSASRIRHLLITHQV--LRNVPPIVFIRDKESAAIAEINRLL 226
>gi|207108739|ref|ZP_03242901.1| ribosome-binding factor A [Helicobacter pylori HPKX_438_CA4C1]
Length = 108
Score = 47.6 bits (113), Expect = 5e-04, Method: Composition-based stats.
Identities = 17/79 (21%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Query: 40 DVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPEL 99
+ +S+++V S A V++ +++S L IR + ++ + P+L
Sbjct: 29 NSLSVTKVECSKGKHHAYVFVL----SQDHKILSKLKKAEGLIRQFVLQASGWFKC-PKL 83
Query: 100 RFRYDTSLQSYWKLNALMC 118
F D SL+ +L+A+
Sbjct: 84 SFVSDNSLEKQLRLDAIFN 102
>gi|68071663|ref|XP_677745.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56497978|emb|CAI04237.1| conserved hypothetical protein [Plasmodium berghei]
Length = 190
Score = 47.6 bits (113), Expect = 5e-04, Method: Composition-based stats.
Identities = 28/110 (25%), Positives = 48/110 (43%), Gaps = 9/110 (8%)
Query: 2 KNKNPKNSRRALRVGEEVRSALMWVILNNEFQ-------DRLISRDVISISEVCMSVDLR 54
K + P++ R +E+++AL +I + D I I+I V +S D
Sbjct: 52 KKETPRHEIYRKRFEKEIKNALQSIIYKKGIKFNYKYHIDEDIIEG-ITIHNVQLSSDCS 110
Query: 55 VATVYISLPLD-VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRY 103
VA V I + D V + + N K IR ++ +++ + VP L F
Sbjct: 111 VAKVIIEIMGDSVDSKQGYIWIKKNCKHIRYKLAELIKHRKRVPFLNFVL 160
>gi|15645661|ref|NP_207838.1| ribosome-binding factor A [Helicobacter pylori 26695]
gi|20978572|sp|O25688|RBFA_HELPY RecName: Full=Ribosome-binding factor A
gi|2314194|gb|AAD08092.1| ribosome-binding factor A (rbfA) [Helicobacter pylori 26695]
Length = 111
Score = 47.6 bits (113), Expect = 5e-04, Method: Composition-based stats.
Identities = 18/79 (22%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Query: 40 DVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPEL 99
+ +S+++V S A V++ S +++S L IR + ++ + P+L
Sbjct: 29 NSLSVTKVECSKGKHHAYVFVL----SSDHKILSKLKKAEGLIRQFVLQASGWFKC-PKL 83
Query: 100 RFRYDTSLQSYWKLNALMC 118
F D SL+ +L+A+
Sbjct: 84 SFVSDNSLEKQLRLDAIFN 102
>gi|260824934|ref|XP_002607422.1| hypothetical protein BRAFLDRAFT_69840 [Branchiostoma floridae]
gi|229292769|gb|EEN63432.1| hypothetical protein BRAFLDRAFT_69840 [Branchiostoma floridae]
Length = 319
Score = 47.6 bits (113), Expect = 5e-04, Method: Composition-based stats.
Identities = 18/112 (16%), Positives = 44/112 (39%), Gaps = 2/112 (1%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS 67
S R V ++ + ++ + + + + + I++V ++ D A V+ P
Sbjct: 82 ESVRQRVVNNTLKKNITELVQSCQVS-QELGEAQVEITKVAVTPDFLTARVFWRAPGLDD 140
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ L+ + +R + + L + VP L F D + ++ L+
Sbjct: 141 DKHIEDLLDRSRFQLRHTLIQ-LHVIGKVPPLVFIKDKEQAAVDEVERLLAT 191
>gi|209525404|ref|ZP_03273944.1| ribosome binding factor A [Arthrospira maxima CS-328]
gi|209494084|gb|EDZ94399.1| ribosome binding factor A [Arthrospira maxima CS-328]
Length = 52
Score = 47.6 bits (113), Expect = 5e-04, Method: Composition-based stats.
Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSV 51
RR RV ++ + V+L + +D + ++SI+EV +S
Sbjct: 7 RRVSRVASLIKREVSQVLLY-DIKDDRVGIGMVSITEVEVSR 47
>gi|207093099|ref|ZP_03240886.1| ribosome-binding factor A [Helicobacter pylori HPKX_438_AG0C1]
Length = 111
Score = 47.6 bits (113), Expect = 5e-04, Method: Composition-based stats.
Identities = 17/79 (21%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Query: 40 DVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPEL 99
+ +S+++V S A V++ +++S L IR + ++ + P+L
Sbjct: 29 NSLSVTKVECSKGKHHAYVFVL----SQDHKILSKLKKAEGLIRQFVLQASGWFKC-PKL 83
Query: 100 RFRYDTSLQSYWKLNALMC 118
F D SL+ +L+A+
Sbjct: 84 SFVSDNSLEKQLRLDAIFN 102
>gi|315586391|gb|ADU40772.1| ribosome-binding factor A [Helicobacter pylori 35A]
gi|317181742|dbj|BAJ59526.1| ribosome-binding factor A [Helicobacter pylori F57]
Length = 111
Score = 47.6 bits (113), Expect = 5e-04, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Query: 40 DVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPEL 99
+ +S+++V S A V++ +++S L IR + ++ + P+L
Sbjct: 29 NSLSVTKVECSKGKHHAFVFVL----SQDHKILSKLKKAEGLIRQFVLQASGWFKC-PKL 83
Query: 100 RFRYDTSLQSYWKLNALM 117
F D SL+ +L+A+
Sbjct: 84 SFVLDNSLEKQLRLDAIF 101
>gi|159164340|pdb|2E7G|A Chain A, Solution Structure Of Putative Ribosome-Binding Factor A
(Rbfa) From Human Mutochondrial Precursor
Length = 129
Score = 47.6 bits (113), Expect = 5e-04, Method: Composition-based stats.
Identities = 19/99 (19%), Positives = 39/99 (39%), Gaps = 3/99 (3%)
Query: 21 SALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISA-LNCNI 79
AL ++ E + + + +S+V ++ D Y L + + A L +
Sbjct: 24 KALTDLLCTPEVS-QELYDLNVELSKVSLTPDFSACRAYWKTTLSAEQNAHMEAVLQRSA 82
Query: 80 KFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+R + + LR VP + F D + +L+ L+
Sbjct: 83 AHMRHLLMSQ-QTLRNVPPIVFVQDKGNAALAELDQLLA 120
>gi|114673756|ref|XP_523982.2| PREDICTED: putative ribosome-binding factor A, mitochondrial-like
[Pan troglodytes]
Length = 380
Score = 47.6 bits (113), Expect = 5e-04, Method: Composition-based stats.
Identities = 21/118 (17%), Positives = 45/118 (38%), Gaps = 3/118 (2%)
Query: 2 KNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS 61
K ++ R + + AL ++ E + + + +S+V ++ D Y
Sbjct: 120 KKTRKEDHARLRALNGLLYKALTDLLCTPEVS-QELYDLNVELSKVSLTPDFSACRAYWK 178
Query: 62 LPLDVSPDRVISA-LNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
L + + A L + +R + + LR VP + F D + +L+ L+
Sbjct: 179 TTLSAEQNAHMEAVLQRSAAHMRHLLMSQ-QTLRNVPPIVFVQDKGNAALAELDQLLA 235
>gi|188527210|ref|YP_001909897.1| ribosome-binding factor A [Helicobacter pylori Shi470]
gi|238691908|sp|B2USN5|RBFA_HELPS RecName: Full=Ribosome-binding factor A
gi|188143450|gb|ACD47867.1| ribosome-binding factor A [Helicobacter pylori Shi470]
Length = 111
Score = 47.6 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 17/79 (21%), Positives = 35/79 (44%), Gaps = 5/79 (6%)
Query: 40 DVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPEL 99
+ +S++ V S A V++ +++S L IR + ++ + P+L
Sbjct: 29 NSLSVTRVECSKGKHHAFVFVL----SQDHKILSKLKKAEGLIRQFVLQASGWFKC-PKL 83
Query: 100 RFRYDTSLQSYWKLNALMC 118
F D SL+ +L+A+
Sbjct: 84 SFVLDNSLEKQLRLDAIFN 102
>gi|85000797|ref|XP_955117.1| hypothetical protein [Theileria annulata strain Ankara]
gi|65303263|emb|CAI75641.1| hypothetical protein, conserved [Theileria annulata]
Length = 390
Score = 47.6 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 3/94 (3%)
Query: 10 RRALRVGEEVRSALMWVIL--NNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS 67
RRA R+ + + + ++ E ++ ISI+ V M Y ++
Sbjct: 219 RRAARISTMLHTHIEQLLTCNKPELLYTHLNGASISINHVEMPTSKSTVKCYYNIISKHD 278
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRF 101
P+ V L+ +R I R L L Y P +RF
Sbjct: 279 PEEVQKGLDKVSSRLRFMIARKL-ELGYTPPIRF 311
>gi|108562825|ref|YP_627141.1| ribosome-binding factor A [Helicobacter pylori HPAG1]
gi|122386654|sp|Q1CUA5|RBFA_HELPH RecName: Full=Ribosome-binding factor A
gi|107836598|gb|ABF84467.1| ribosome-binding factor A [Helicobacter pylori HPAG1]
Length = 111
Score = 47.3 bits (112), Expect = 7e-04, Method: Composition-based stats.
Identities = 18/86 (20%), Positives = 37/86 (43%), Gaps = 5/86 (5%)
Query: 40 DVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPEL 99
+ +S+++V S A V++ S +++S L IR + ++ + P+L
Sbjct: 29 NSLSVTKVECSKGKHHALVFVL----SSDHKILSKLKKAEGLIRQFVLQASGWFKC-PKL 83
Query: 100 RFRYDTSLQSYWKLNALMCLPKIPVA 125
F D SL+ +L+A+
Sbjct: 84 SFVSDNSLEKQLRLDAIFNEIAKGRD 109
>gi|307189200|gb|EFN73648.1| Putative ribosome-binding factor A, mitochondrial [Camponotus
floridanus]
Length = 310
Score = 46.9 bits (111), Expect = 8e-04, Method: Composition-based stats.
Identities = 24/103 (23%), Positives = 41/103 (39%), Gaps = 4/103 (3%)
Query: 18 EVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVY-ISLPLDVSPDRVISALN 76
+ ++ E D I I I+ V ++ D + VY I+ DVS AL
Sbjct: 46 LFMKHITDLMSLGEVSD--IINGGIEITCVKITPDYKCVNVYWINSTNDVSSPISKEALQ 103
Query: 77 CNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
K IR + + LR + VP ++F D + ++ +
Sbjct: 104 KCAKIIRHELSQ-LRIIGIVPPIQFVEDKRFATEKEVERRLAT 145
>gi|255083088|ref|XP_002504530.1| predicted protein [Micromonas sp. RCC299]
gi|226519798|gb|ACO65788.1| predicted protein [Micromonas sp. RCC299]
Length = 211
Score = 46.9 bits (111), Expect = 8e-04, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Query: 36 LISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRY 95
++I EV M+ D ++A V ++ D AL N ++ G+ L + ++
Sbjct: 4 RFDGTGVAILEVRMARDFKLAHVRWTVHDDGDSRAAAHALRRNAAALKTMAGKMLGS-KH 62
Query: 96 VPELRFRYD 104
P L F D
Sbjct: 63 TPRLEFIDD 71
>gi|195479046|ref|XP_002100744.1| GE17234 [Drosophila yakuba]
gi|194188268|gb|EDX01852.1| GE17234 [Drosophila yakuba]
Length = 176
Score = 46.9 bits (111), Expect = 9e-04, Method: Composition-based stats.
Identities = 14/84 (16%), Positives = 34/84 (40%), Gaps = 2/84 (2%)
Query: 23 LMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFI 82
+ ++ D ++ + + IS V ++ D VY + + LN +
Sbjct: 12 ITDILATGAVADSIVGQG-VQISYVKITSDFSRINVYWMGKDGGENQELENTLNRMSGRL 70
Query: 83 RGRIGRSLRNLRYVPELRFRYDTS 106
+ + + L + VP+++F D +
Sbjct: 71 QHELSQ-LHLMGEVPKIKFVRDKT 93
>gi|308182569|ref|YP_003926696.1| ribosome-binding factor A [Helicobacter pylori PeCan4]
gi|308064754|gb|ADO06646.1| ribosome-binding factor A [Helicobacter pylori PeCan4]
Length = 111
Score = 46.9 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 18/79 (22%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Query: 40 DVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPEL 99
+ +S+++V S A V++ S +++S L IR + ++ + P+L
Sbjct: 29 NSLSVTKVECSKGKHHAYVFVL----SSDHKILSKLKKAEGLIRQFVLQTSGWFKC-PKL 83
Query: 100 RFRYDTSLQSYWKLNALMC 118
F D SL+ +L+A+
Sbjct: 84 SFVSDNSLEKQLRLDAIFN 102
>gi|194033752|ref|XP_001924560.1| PREDICTED: putative ribosome-binding factor A, mitochondrial [Sus
scrofa]
Length = 325
Score = 46.9 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 19/118 (16%), Positives = 46/118 (38%), Gaps = 3/118 (2%)
Query: 2 KNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS 61
K ++ R + + AL ++ E + I + +S+V ++ D V+
Sbjct: 72 KTTRKEDHVRLRALNGLLHKALTDMLCTPEVS-QEICDLNVELSKVSLTTDFSACRVFWR 130
Query: 62 LPLDVSPDR-VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
L + + + L + +R + + LR +P + F D + +++ L+
Sbjct: 131 ATLSEAQNAHTEAVLQRSAAHMRHLLMSQ-QTLRSMPPIVFVQDKKHAAAVEVDQLLA 187
>gi|308233947|ref|ZP_07664684.1| ribosome-binding factor A [Atopobium vaginae DSM 15829]
gi|328943959|ref|ZP_08241424.1| hypothetical protein HMPREF0091_10649 [Atopobium vaginae DSM 15829]
gi|327491928|gb|EGF23702.1| hypothetical protein HMPREF0091_10649 [Atopobium vaginae DSM 15829]
Length = 127
Score = 46.5 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 15/70 (21%), Positives = 27/70 (38%), Gaps = 4/70 (5%)
Query: 58 VYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
VY+S + V IR +G +L R P L F+ DT+ +++ +
Sbjct: 50 VYVSC-ESSRYEEVQRGFARAKSRIRRLLGHALDW-RVTPALVFKIDTTADQAERISQAL 107
Query: 118 CLPKIPVALE 127
+P +
Sbjct: 108 QD--VPKTIH 115
>gi|221055045|ref|XP_002258661.1| hypothetical protein, conserved in Plasmodium species [Plasmodium
knowlesi strain H]
gi|193808731|emb|CAQ39433.1| hypothetical protein, conserved in Plasmodium species [Plasmodium
knowlesi strain H]
Length = 220
Score = 46.5 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 27/109 (24%), Positives = 44/109 (40%), Gaps = 13/109 (11%)
Query: 7 KNSRR----ALRVGEEVRSALMWVILNNEFQ-------DRLISRDVISISEVCMSVDLRV 55
KNS R R E++ L ++ + D I I I V ++ D V
Sbjct: 51 KNSSRHEIYKKRFERELKETLQSILYKKGIKINYKYHIDEDIIEG-IGIHRVQLNSDCSV 109
Query: 56 ATVYISLPLDV-SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRY 103
A V+I + D + L N K IR + +++++ + VP L F
Sbjct: 110 AKVFIEIMGDSIDSRQGYIWLKKNCKRIRYMLAQAIKHRKKVPFLNFVL 158
>gi|317010676|gb|ADU84423.1| ribosome-binding factor A [Helicobacter pylori SouthAfrica7]
Length = 111
Score = 46.5 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 21/102 (20%), Positives = 44/102 (43%), Gaps = 13/102 (12%)
Query: 17 EEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALN 76
E ++ AL + D ++ +S+++V S A V++ +++S L
Sbjct: 14 ELLQEALSSL------NDSELNS--LSVTKVECSKGKYHAFVFVL----SQDHKILSKLK 61
Query: 77 CNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
IR + ++ + P+L F D SL+ +L+A+
Sbjct: 62 RAESLIRQFVLQASGWFKC-PKLSFVLDNSLEKQLRLDAIFN 102
>gi|149551285|ref|XP_001517431.1| PREDICTED: hypothetical protein [Ornithorhynchus anatinus]
Length = 328
Score = 46.5 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 25/119 (21%), Positives = 47/119 (39%), Gaps = 7/119 (5%)
Query: 3 NKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI-S 61
+ S R + + AL ++ N E D + + +++V +S D V VY +
Sbjct: 17 KTRKEESIRKRALDGLLYQALTDLVSNWEI-DGDLYDLNVELTKVSLSPDFSVCRVYWKT 75
Query: 62 LPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWK--LNALMC 118
+P D V + L +R + R L+ VP + F D + + + L+
Sbjct: 76 VPSVEKNDHVEAVLRKTAPRMRHLLITQ-RILQNVPPVVFVRDR--EDAARSEVERLLR 131
>gi|164420779|ref|NP_001106721.1| hypothetical protein LOC510927 [Bos taurus]
gi|296473906|gb|DAA16021.1| hypothetical protein LOC510927 [Bos taurus]
Length = 292
Score = 46.1 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 21/122 (17%), Positives = 48/122 (39%), Gaps = 12/122 (9%)
Query: 7 KNSRRALRVGEEVR---------SALMWVILNNEFQDRLISRDVISISEVCMSVDLRVAT 57
K++ R R ++VR AL ++ E + + + + +V ++ D
Sbjct: 68 KSTSRRTRKEDQVRLRALNGLLYKALTDLLCTPEVS-QELCDLNVELCKVSLTSDFSACR 126
Query: 58 VYISLPLDVSPDR-VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNAL 116
V+ L + + + L + +R + + LR VP + F D + +++ L
Sbjct: 127 VFWRATLSEAQNAHTEAVLRRSAAHMRHLLMSQ-QTLRNVPPIVFVQDKKYAAVMEVDRL 185
Query: 117 MC 118
+
Sbjct: 186 LA 187
>gi|291276414|ref|YP_003516186.1| ribosome-binding factor A [Helicobacter mustelae 12198]
gi|290963608|emb|CBG39440.1| Putative ribosome-binding factor A [Helicobacter mustelae 12198]
Length = 113
Score = 46.1 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 19/88 (21%), Positives = 35/88 (39%), Gaps = 7/88 (7%)
Query: 34 DRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR---VISALNCNIKFIRGRIGRSL 90
D I+ +SI+EV S A VY+ L + ++ L +R + +
Sbjct: 26 DTRINH--LSITEVVCSRGKYNAEVYV-LFDGQDKEEQRQLLKILQKAEGVLREYVLSAS 82
Query: 91 RNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ P F+ D SL+ +L+ +
Sbjct: 83 GWFKC-PRFTFKSDESLERANQLDQIFA 109
>gi|319957626|ref|YP_004168889.1| ribosome-binding factor a [Nitratifractor salsuginis DSM 16511]
gi|319420030|gb|ADV47140.1| ribosome-binding factor A [Nitratifractor salsuginis DSM 16511]
Length = 121
Score = 45.3 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 19/115 (16%), Positives = 42/115 (36%), Gaps = 12/115 (10%)
Query: 10 RRALRV-GEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI--SLPLDV 66
+R V E + AL + D I+ ++++EV S A V++ +
Sbjct: 9 KRTESVLKELIPEALSTL------DDERINA--LNVTEVLCSRGRYDARVFLDPTGIEPE 60
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+ + L +++ + + P F +D L+ K++ L +
Sbjct: 61 EQEEALKRLRKVAGYLKTYV-KEAEGWYKAPNFTFEFDDQLERISKMDQLFKKIE 114
>gi|152993549|ref|YP_001359270.1| ribosome-binding factor A [Sulfurovum sp. NBC37-1]
gi|151425410|dbj|BAF72913.1| ribosome-binding factor A [Sulfurovum sp. NBC37-1]
Length = 129
Score = 45.3 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 18/108 (16%), Positives = 37/108 (34%), Gaps = 7/108 (6%)
Query: 14 RVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI--SLPLDVSPDRV 71
RV ++ + + D I+ V +++V S A VY+ S
Sbjct: 10 RVESVLKEIIPEALS--TLDDERINALV--VTDVICSKGRSDAKVYLDKSFLSPKEQSEA 65
Query: 72 ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ L +++ +S + P F +D L+ ++ L
Sbjct: 66 LRQLRTVAGYVQNHCKQSEGWFK-APRFTFEFDEQLEKVSRMEELFKQ 112
>gi|322786545|gb|EFZ12954.1| hypothetical protein SINV_15398 [Solenopsis invicta]
Length = 186
Score = 45.3 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 18/85 (21%), Positives = 34/85 (40%), Gaps = 3/85 (3%)
Query: 18 EVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNC 77
+ ++ E D I + I I+ V ++ D V+ D + AL
Sbjct: 23 LFMEHITDMMSMGEVSD--IIKGSIEITHVKITPDFEYVNVFYISSNDDALSVDQEALQK 80
Query: 78 NIKFIRGRIGRSLRNLRYVPELRFR 102
+ IR ++ + LR + VP ++F
Sbjct: 81 CARIIRHKLSQ-LRVIGIVPPIQFV 104
>gi|161833720|ref|YP_001597916.1| putative ribosome-binding factor A [Candidatus Sulcia muelleri
GWSS]
gi|152206210|gb|ABS30520.1| putative ribosome-binding factor A [Candidatus Sulcia muelleri
GWSS]
Length = 101
Score = 45.3 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 15/87 (17%), Positives = 35/87 (40%), Gaps = 3/87 (3%)
Query: 24 MWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIR 83
+ R +I I++V ++ D +A +YIS + +I +N K+ +
Sbjct: 16 SEIFNRELIYFP--YRKLIIITKVIVNSDFSLAKIYISFFPKENQYNLIKIINNKSKYYK 73
Query: 84 G-RIGRSLRNLRYVPELRFRYDTSLQS 109
+ + +P + F+ D + +
Sbjct: 74 KILFKKLRFKFKKMPNIFFKIDKNFTN 100
>gi|71027613|ref|XP_763450.1| hypothetical protein [Theileria parva strain Muguga]
gi|68350403|gb|EAN31167.1| hypothetical protein TP03_0430 [Theileria parva]
Length = 391
Score = 44.9 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 22/94 (23%), Positives = 38/94 (40%), Gaps = 3/94 (3%)
Query: 10 RRALRVGEEVRSALMWVIL--NNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS 67
RRA R+ + + + ++ E ++ ISI+ V M Y ++
Sbjct: 219 RRAARISTMLHTHIEQLLTCNKPELLYTHLNGASISINHVEMPTSKSTVKCYYNIISKHD 278
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRF 101
P+ V L+ +R I R L L Y P ++F
Sbjct: 279 PEEVQKGLDKVSSRLRFMIARKL-ELGYTPPIKF 311
>gi|309364766|emb|CAP24248.2| hypothetical protein CBG_03339 [Caenorhabditis briggsae AF16]
Length = 234
Score = 44.9 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 19/101 (18%), Positives = 38/101 (37%), Gaps = 3/101 (2%)
Query: 18 EVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNC 77
++ L I D ++ + + I+ V + +VY + V+ L
Sbjct: 88 QLSRILEERIGEVISTDDILGQLQLHITRVRVDRGFTQVSVYW-MCRGEGDQEVVEILET 146
Query: 78 NIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ I+ ++ S PEL+F D SL +++ L
Sbjct: 147 SKHQIKRQVSESTGI--TCPELKFVGDKSLLMGQEMDKLFR 185
>gi|34558304|ref|NP_908119.1| ribosome-binding factor A [Wolinella succinogenes DSM 1740]
gi|39931714|sp|Q7MQU1|RBFA_WOLSU RecName: Full=Ribosome-binding factor A
gi|34484023|emb|CAE11019.1| conserved hypothetical protein [Wolinella succinogenes]
Length = 119
Score = 44.9 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 23/127 (18%), Positives = 41/127 (32%), Gaps = 11/127 (8%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
MK K S + R ++ + + D ++ + + EV S A VY+
Sbjct: 1 MKEK----SVKLQRTESLLKEVIPEALS--TLSDTRLNS--LGVVEVDCSKGKYHAEVYL 52
Query: 61 SLPLD--VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
P ++ L IR + + P F +D S +L+A+
Sbjct: 53 DAPFATPEEKREILRQLRLAEGTIRDHCLSATGWFKC-PRFHFNFDDSTDKANRLDAIFE 111
Query: 119 LPKIPVA 125
K
Sbjct: 112 QLKKERE 118
>gi|84996229|ref|XP_952836.1| hypothetical protein [Theileria annulata strain Ankara]
gi|65303834|emb|CAI76211.1| hypothetical protein, conserved [Theileria annulata]
Length = 479
Score = 44.6 bits (105), Expect = 0.004, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 40 DVISISEVCMSVDLRVATVYISLPLDV-SPDRVISALNCNIKFIRGRIGRSLRNLRYVPE 98
IS+ EV ++ + A ++I + D + S LN N K +R +G+ LR + VP
Sbjct: 349 HSISVMEVKLNSNCTHADIFILISGDSFQQRQCYSWLNRNNKRLRYLMGQMLRYRKNVPT 408
Query: 99 LRFRY 103
+ F
Sbjct: 409 INFHP 413
>gi|40353224|ref|NP_954667.1| putative ribosome-binding factor A, mitochondrial precursor [Mus
musculus]
gi|73621443|sp|Q6P3B9|RBFAL_MOUSE RecName: Full=Putative ribosome-binding factor A, mitochondrial;
Flags: Precursor
gi|39794027|gb|AAH64066.1| RIKEN cDNA 1110032A13 gene [Mus musculus]
gi|74219032|dbj|BAE26661.1| unnamed protein product [Mus musculus]
gi|148677474|gb|EDL09421.1| RIKEN cDNA 1110032A13, isoform CRA_b [Mus musculus]
Length = 350
Score = 44.6 bits (105), Expect = 0.004, Method: Composition-based stats.
Identities = 22/131 (16%), Positives = 50/131 (38%), Gaps = 16/131 (12%)
Query: 7 KNSRRALRVGEEVRSALMWVI----LNNEFQDRLISRDVISISEVCMSVDLRVATVYISL 62
++S R + + +L ++ ++ E D + +S+V ++ D VY
Sbjct: 90 EDSIRLRVLNGLLYKSLTELLCTPQVSQEVYD-----LNVELSKVSVTSDFSACRVYWKT 144
Query: 63 PLDVSPDR-VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL-- 119
+ ++ S L + ++R + + LR VP + F D +++ L+
Sbjct: 145 GVSAEQNKHTESVLQRSAAYMRHLLISQ-QTLRNVPPIVFVQDKRDLVLAEVDRLLAEAD 203
Query: 120 ---PKIPVALE 127
P L+
Sbjct: 204 FGPPDERDDLD 214
>gi|157817256|ref|NP_001100843.1| hypothetical protein LOC307235 [Rattus norvegicus]
gi|149015929|gb|EDL75236.1| rCG20569, isoform CRA_a [Rattus norvegicus]
Length = 238
Score = 44.6 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 19/100 (19%), Positives = 37/100 (37%), Gaps = 12/100 (12%)
Query: 20 RSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDR-VISALNCN 78
R L E D + +S+V ++ D VY + +R + L +
Sbjct: 5 RRTLSQ-----EVYD-----LNVELSKVSVTPDFSACRVYWKTGVSAEQNRHTEAVLQRS 54
Query: 79 IKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
++R + + LR VP + F D +++ L+
Sbjct: 55 ATYMRHLLISQ-QTLRNVPPIVFVQDKRDIVLAEVDRLLA 93
>gi|293977830|ref|YP_003543260.1| ribosome-binding factor A [Candidatus Sulcia muelleri DMIN]
gi|292667761|gb|ADE35396.1| Ribosome-binding factor A [Candidatus Sulcia muelleri DMIN]
Length = 96
Score = 44.2 bits (104), Expect = 0.006, Method: Composition-based stats.
Identities = 15/83 (18%), Positives = 33/83 (39%), Gaps = 3/83 (3%)
Query: 24 MWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIR 83
+ R +I I++V ++ D +A +YIS + +I +N K+ +
Sbjct: 16 SEIFNRELIYFP--YRKLIIITKVIVNSDFSLAKIYISFFPKENQYNLIKIINNKSKYYK 73
Query: 84 G-RIGRSLRNLRYVPELRFRYDT 105
+ + +P + F+ D
Sbjct: 74 KILFKKLRFKFKKMPNIFFKIDD 96
>gi|194214778|ref|XP_001496109.2| PREDICTED: similar to CG15916 CG15916-PA [Equus caballus]
Length = 301
Score = 44.2 bits (104), Expect = 0.006, Method: Composition-based stats.
Identities = 20/103 (19%), Positives = 40/103 (38%), Gaps = 11/103 (10%)
Query: 21 SALMWVI----LNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISA-L 75
AL ++ ++ E D + +S+V ++ D VY L + A L
Sbjct: 58 KALTDLLCTPEVSQEVYDLNLE-----LSKVSLTSDFSACRVYWKTTLSAEQNSHTEATL 112
Query: 76 NCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ +R + + LR VP + F D + +++ L+
Sbjct: 113 RRSAAHVRHLLMSQ-QTLRNVPPIVFVQDKENAALAEVDRLLA 154
>gi|258596973|ref|XP_001347320.2| conserved Plasmodium protein [Plasmodium falciparum 3D7]
gi|254922377|gb|AAN35233.2| conserved Plasmodium protein [Plasmodium falciparum 3D7]
Length = 199
Score = 44.2 bits (104), Expect = 0.006, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 42 ISISEVCMSVDLRVATVYISLPLDV-SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELR 100
IS+ +V ++ D VA V++ + D + + N K IR ++ + ++ + VP L
Sbjct: 103 ISVYKVELNSDCSVAKVFVEIMGDSIDARQGYIWIKRNTKDIRYKLAQLIKERKRVPFLN 162
Query: 101 FRY 103
F
Sbjct: 163 FVL 165
>gi|119587047|gb|EAW66643.1| chromosome 18 open reading frame 22, isoform CRA_b [Homo sapiens]
Length = 174
Score = 44.2 bits (104), Expect = 0.006, Method: Composition-based stats.
Identities = 19/104 (18%), Positives = 39/104 (37%), Gaps = 3/104 (2%)
Query: 2 KNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS 61
K ++ R + + AL ++ E + + + +S+V ++ D Y
Sbjct: 48 KKTRKEDHARLRALNGLLYKALTDLLCTPEVS-QELYDLNVELSKVSLTPDFSACRAYWK 106
Query: 62 LPLDVSPDRVISA-LNCNIKFIRGRIGRSLRNLRYVPELRFRYD 104
L + + A L + +R + + LR VP + F D
Sbjct: 107 TTLSAEQNAHMEAVLQRSAAHMRHLLMSQ-QTLRNVPPIVFVQD 149
>gi|156083807|ref|XP_001609387.1| hypothetical protein [Babesia bovis T2Bo]
gi|154796638|gb|EDO05819.1| hypothetical protein BBOV_IV002220 [Babesia bovis]
Length = 329
Score = 44.2 bits (104), Expect = 0.006, Method: Composition-based stats.
Identities = 24/98 (24%), Positives = 37/98 (37%), Gaps = 10/98 (10%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDR-----LISRDVISISEVCMSVDLRVATVYISLPL 64
RR LR+ ++ L +I N D + IS+ +V M+ Y ++
Sbjct: 192 RRRLRINAMIQDHLEQIITAN---DPSLLLGDVKGASISLKKVEMASGKSTIRCYYTILG 248
Query: 65 DVSPDRVI-SALNCNIKFIRGRIGRSLRNLRYVPELRF 101
+ I L K IR + R L L Y P + F
Sbjct: 249 GDGKEAYIHQMLQQAQKKIRYFLARKL-ELGYTPPVLF 285
>gi|156096613|ref|XP_001614340.1| hypothetical protein [Plasmodium vivax SaI-1]
gi|148803214|gb|EDL44613.1| hypothetical protein, conserved [Plasmodium vivax]
Length = 220
Score = 44.2 bits (104), Expect = 0.006, Method: Composition-based stats.
Identities = 26/109 (23%), Positives = 46/109 (42%), Gaps = 13/109 (11%)
Query: 7 KNSRRAL----RVGEEVRSALMWVILNNEFQ-------DRLISRDVISISEVCMSVDLRV 55
KNS R R E++ L ++ + D I I+I +V ++ D V
Sbjct: 51 KNSSRHEIYRKRFERELKETLQSILYKKGIKINYKYHIDEDIIEG-IAIHQVQLNSDCSV 109
Query: 56 ATVYISLPLDV-SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRY 103
A V+I + D + + N K IR + +++++ + VP L F
Sbjct: 110 AKVFIEIMGDSIDSRQGYIWMKKNCKRIRYMLAQAIKHRKRVPFLNFVL 158
>gi|303281112|ref|XP_003059848.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226458503|gb|EEH55800.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 481
Score = 43.8 bits (103), Expect = 0.007, Method: Composition-based stats.
Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 3/96 (3%)
Query: 12 ALRVGEEVRSALMWVILNNEFQDRLISRDV-ISISEVCMSVDLRVATVYISLPLDVSPDR 70
++ G R AL V+ ++ + R R + + E MS D + A V + D R
Sbjct: 115 QIKAGVRFRKALCAVMESSSMRHRFGGRGRDVVVLECRMSSDFKTAHVRWTTAFDDDDGR 174
Query: 71 VIS-ALNCNIKFIRGRIGRSLRNLRYVPELRFRYDT 105
+ L N +R GR LR+ ++ P L F D
Sbjct: 175 IAERNLRANATRLREMTGRLLRS-KHTPRLVFVNDD 209
>gi|221124732|ref|XP_002160877.1| PREDICTED: hypothetical protein [Hydra magnipapillata]
Length = 210
Score = 43.8 bits (103), Expect = 0.008, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 47/119 (39%), Gaps = 10/119 (8%)
Query: 3 NKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL 62
K+PK S E V++A+ + L+ E + + I + +V + L A V
Sbjct: 86 EKSPKQSA----YAEIVKTAVESLFLSTELPEP-LQSGTIEVVKVEVGPSLCSANVIWKC 140
Query: 63 P----LDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
P + AL N+K IR + + + P + F+YD Q ++ L
Sbjct: 141 PQFEGNLEKKSEIEKALETNLKQIRLLL-PAYSTVTQTPVVTFQYDKFTQQEEDIDKLF 198
>gi|148677473|gb|EDL09420.1| RIKEN cDNA 1110032A13, isoform CRA_a [Mus musculus]
Length = 320
Score = 43.4 bits (102), Expect = 0.009, Method: Composition-based stats.
Identities = 17/92 (18%), Positives = 36/92 (39%), Gaps = 7/92 (7%)
Query: 42 ISISEVCMSVDLRVATVYISLPLDVSPDR-VISALNCNIKFIRGRIGRSLRNLRYVPELR 100
+ +S+V ++ D VY + ++ S L + ++R + + LR VP +
Sbjct: 94 VELSKVSVTSDFSACRVYWKTGVSAEQNKHTESVLQRSAAYMRHLLISQ-QTLRNVPPIV 152
Query: 101 FRYDTSLQSYWKLNALMCL-----PKIPVALE 127
F D +++ L+ P L+
Sbjct: 153 FVQDKRDLVLAEVDRLLAEADFGPPDERDDLD 184
>gi|148233580|ref|NP_001082954.1| hypothetical protein LOC100037330 [Danio rerio]
gi|134025030|gb|AAI35029.1| Zgc:162590 protein [Danio rerio]
Length = 285
Score = 43.4 bits (102), Expect = 0.010, Method: Composition-based stats.
Identities = 23/119 (19%), Positives = 44/119 (36%), Gaps = 5/119 (4%)
Query: 3 NKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL 62
+N ++S R + + + ++ + E IS + IS+V ++ D +Y
Sbjct: 30 KRNVEDSVRVRTLNIIIYKTVTDLLSSYELN-SEISAYNVEISKVSLTKDFSACRIYWKT 88
Query: 63 PLDVSPD-RVISALNCNIKFIRGRI-GRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
L D + AL+ IR + L VP + F D ++ L+
Sbjct: 89 SLSAEQDRQTQQALDKCAPRIRHLLVSHQLIG--NVPPVVFVRDKQYAVVTEIENLLKQ 145
>gi|195135043|ref|XP_002011945.1| GI14290 [Drosophila mojavensis]
gi|193909199|gb|EDW08066.1| GI14290 [Drosophila mojavensis]
Length = 377
Score = 43.4 bits (102), Expect = 0.011, Method: Composition-based stats.
Identities = 23/120 (19%), Positives = 51/120 (42%), Gaps = 6/120 (5%)
Query: 8 NSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS 67
N+RR + + + + ++ + + ++ R + +S V + D VY L D+S
Sbjct: 97 NTRRMSVLNKLFMTHITDLLATGQAAESILGRGL-QVSRVKICSDFSCINVYW-LGSDIS 154
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALE 127
+ + L +R + + LR + VP ++F D S S + ++ + +E
Sbjct: 155 LE---ADLQRCSGQLRHELSQ-LRLMGEVPRIKFVRDKSGSSINNVEGILRSLNLSKPVE 210
>gi|296219526|ref|XP_002755934.1| PREDICTED: putative ribosome-binding factor A, mitochondrial-like
[Callithrix jacchus]
Length = 342
Score = 43.4 bits (102), Expect = 0.011, Method: Composition-based stats.
Identities = 20/123 (16%), Positives = 47/123 (38%), Gaps = 8/123 (6%)
Query: 1 MKNKNPKNSR----RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVA 56
M++ + K + R + + AL ++ E + + + +S+V ++ D
Sbjct: 78 MRSTSQKTRKEDHVRLRALNGLLYKALTDLLCTPEVS-QELYDLNVELSKVSLTPDFSAC 136
Query: 57 TVYI-SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNA 115
VY + R + L + + + + LR VP + F D + +++
Sbjct: 137 RVYWKTTLSAEQNARTETVLQKSAAHMHLLMSQQ--TLRNVPPIVFVKDKQSAALAEIDQ 194
Query: 116 LMC 118
L+
Sbjct: 195 LLA 197
>gi|268537056|ref|XP_002633664.1| Hypothetical protein CBG03339 [Caenorhabditis briggsae]
Length = 180
Score = 43.4 bits (102), Expect = 0.011, Method: Composition-based stats.
Identities = 19/101 (18%), Positives = 38/101 (37%), Gaps = 3/101 (2%)
Query: 18 EVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNC 77
++ L I D ++ + + I+ V + +VY + V+ L
Sbjct: 34 QLSRILEERIGEVISTDDILGQLQLHITRVRVDRGFTQVSVYW-MCRGEGDQEVVEILET 92
Query: 78 NIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ I+ ++ S PEL+F D SL +++ L
Sbjct: 93 SKHQIKRQVSESTGI--TCPELKFVGDKSLLMGQEMDKLFR 131
>gi|215447092|ref|ZP_03433844.1| ribosome-binding factor A [Mycobacterium tuberculosis T85]
Length = 57
Score = 42.2 bits (99), Expect = 0.021, Method: Composition-based stats.
Identities = 9/34 (26%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 31 EFQDRLISRDVISISEVCMSVDLRVATVYISLPL 64
E +D ++ ++I++ ++ DL ATVY ++
Sbjct: 25 EIKDPGLAG--VTITDAKVTADLHDATVYYTVMG 56
>gi|289758957|ref|ZP_06518335.1| predicted protein [Mycobacterium tuberculosis T85]
gi|289714521|gb|EFD78533.1| predicted protein [Mycobacterium tuberculosis T85]
Length = 58
Score = 42.2 bits (99), Expect = 0.023, Method: Composition-based stats.
Identities = 9/34 (26%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 31 EFQDRLISRDVISISEVCMSVDLRVATVYISLPL 64
E +D ++ ++I++ ++ DL ATVY ++
Sbjct: 26 EIKDPGLAG--VTITDAKVTADLHDATVYYTVMG 57
>gi|332017036|gb|EGI57835.1| Putative ribosome-binding factor A, mitochondrial [Acromyrmex
echinatior]
Length = 305
Score = 41.9 bits (98), Expect = 0.028, Method: Composition-based stats.
Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 5/85 (5%)
Query: 18 EVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNC 77
+ ++ + D I ++ I I+ V ++ D + V+ D S D+ AL
Sbjct: 30 LFMQHITDMMSMGQVSD--IIKESIEITHVKITQDFKCVNVFYIPSNDASVDQ--EALQK 85
Query: 78 NIKFIRGRIGRSLRNLRYVPELRFR 102
IR + + LR + VP + F
Sbjct: 86 CAGIIRHELSQ-LRIIGIVPPIYFV 109
>gi|294782513|ref|ZP_06747839.1| conserved hypothetical protein [Fusobacterium sp. 1_1_41FAA]
gi|294481154|gb|EFG28929.1| conserved hypothetical protein [Fusobacterium sp. 1_1_41FAA]
Length = 255
Score = 41.9 bits (98), Expect = 0.031, Method: Composition-based stats.
Identities = 13/54 (24%), Positives = 30/54 (55%), Gaps = 7/54 (12%)
Query: 46 EVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPEL 99
EV ++ D T+Y++ ++ + + V LN ++ F +G+ L+ + +PE+
Sbjct: 51 EVKVNRD----TIYLNHFINKTKEGVFKGLNNHVLF---ELGKELKFYKGIPEI 97
>gi|157738247|ref|YP_001490931.1| ribosome-binding factor A [Arcobacter butzleri RM4018]
gi|157700101|gb|ABV68261.1| ribosome binding factor A [Arcobacter butzleri RM4018]
Length = 119
Score = 41.5 bits (97), Expect = 0.036, Method: Composition-based stats.
Identities = 26/115 (22%), Positives = 40/115 (34%), Gaps = 13/115 (11%)
Query: 17 EEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRV-ATVYI--SLPLDVSPDRVIS 73
E + AL + D I+ I+ V + + A VY S +IS
Sbjct: 15 ELIPQALSNL------DDERINSLPIT--GVNC-KNGKYDAIVYFDGSDFDKDEIKAIIS 65
Query: 74 ALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALEK 128
LN I+ + S + P F DTSL+ + L K + E+
Sbjct: 66 LLNRANGRIKSDVLASTSWYKC-PNFTFVNDTSLEKSKHIEDLFAQIKKTKSSEE 119
>gi|237752795|ref|ZP_04583275.1| ribosome-binding factor A [Helicobacter winghamensis ATCC BAA-430]
gi|229376284|gb|EEO26375.1| ribosome-binding factor A [Helicobacter winghamensis ATCC BAA-430]
Length = 120
Score = 41.5 bits (97), Expect = 0.040, Method: Composition-based stats.
Identities = 18/108 (16%), Positives = 41/108 (37%), Gaps = 7/108 (6%)
Query: 12 ALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL--DVSPD 69
R ++ L + N D ++ +++ +V S A V+++ P +
Sbjct: 4 QARTQSLLKEILPSALAN--LSDTRLNA--LNVVDVRCSRGKYFAEVFLNAPFATEKEKA 59
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
++ L I+ R P+ +F +D SL+ +L+ +
Sbjct: 60 EILKQLKKAHSLIKAFCLEETGWFRC-PDFKFIFDGSLEQENRLDQIF 106
>gi|126002354|ref|XP_001352328.1| GA14024 [Drosophila pseudoobscura pseudoobscura]
gi|54640301|gb|EAL29308.1| GA14024 [Drosophila pseudoobscura pseudoobscura]
Length = 270
Score = 41.5 bits (97), Expect = 0.043, Method: Composition-based stats.
Identities = 16/114 (14%), Positives = 44/114 (38%), Gaps = 3/114 (2%)
Query: 7 KNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV 66
N+RR + + + + ++ ++ + ++ V +S D VY D
Sbjct: 95 HNTRRISVLNKLFMTKITDMLSTGAAVQSIVGLGL-HVTRVKISSDFSHINVYWLGRTDE 153
Query: 67 SPDRVIS-ALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+ L ++ + + LR + +P ++F D + + ++L ++
Sbjct: 154 QEGGALETELWRYSSQLQHELTQ-LRLMGKMPRIKFVRDKTANNLYQLRGILSN 206
>gi|268678890|ref|YP_003303321.1| ribosome-binding factor A [Sulfurospirillum deleyianum DSM 6946]
gi|268616921|gb|ACZ11286.1| ribosome-binding factor A [Sulfurospirillum deleyianum DSM 6946]
Length = 125
Score = 41.1 bits (96), Expect = 0.051, Method: Composition-based stats.
Identities = 24/113 (21%), Positives = 48/113 (42%), Gaps = 12/113 (10%)
Query: 10 RRALRV-GEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI--SLPLDV 66
+R + E + AL + +D ++ + + +V S A VY+ S+ +
Sbjct: 9 QRTQSILKELIPEALSTL------EDEMLRG--VCVIDVECSRGKYDAIVYLDGSVYDEA 60
Query: 67 SPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
++S L+ + I+ ++ R P RFR+D SL+ K++ L
Sbjct: 61 EKRYILSHLDRVQRHIQTHCMQAEGWFRC-PHFRFRFDDSLERQNKMDTLFAR 112
>gi|308812015|ref|XP_003083315.1| unnamed protein product [Ostreococcus tauri]
gi|116055195|emb|CAL57591.1| unnamed protein product [Ostreococcus tauri]
Length = 200
Score = 41.1 bits (96), Expect = 0.055, Method: Composition-based stats.
Identities = 21/94 (22%), Positives = 40/94 (42%), Gaps = 7/94 (7%)
Query: 12 ALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRV 71
+R VR AL VI +++ + ++ D + TV++ +
Sbjct: 29 QIRESARVRKALTHVIHYELAH--KFDGSGVNVMDARVARDFK--TVHVLYGSTRVGEEH 84
Query: 72 IS--ALNCNIKFIRGRIGRSLRNLRYVPELRFRY 103
I+ AL N + IR + + + L++ P L FR+
Sbjct: 85 IAGRALERNAQKIRTMVSK-MLTLKHTPRLEFRF 117
>gi|156084878|ref|XP_001609922.1| hypothetical protein [Babesia bovis T2Bo]
gi|154797174|gb|EDO06354.1| hypothetical protein BBOV_II003990 [Babesia bovis]
Length = 149
Score = 41.1 bits (96), Expect = 0.057, Method: Composition-based stats.
Identities = 21/92 (22%), Positives = 42/92 (45%), Gaps = 4/92 (4%)
Query: 34 DRLISRDVISISEVCMSVDLRVATVYISLPLDV-SPDRVISALNCNIKFIRGRIGRSLRN 92
D I + ++ EV ++ D A + I + D + S L+ N K +R R+ + LR+
Sbjct: 18 DPDIIDGM-NVMEVSLNNDCSHARLKICITGDSFQQRQGFSWLSKNNKLLRYRLAQILRH 76
Query: 93 LRYVPELRFRYDTSLQSYWK--LNALMCLPKI 122
+ VP L F +Q + + + + ++
Sbjct: 77 RKNVPTLSFESHNLIQQAGRKFIEQIASIAEV 108
>gi|133931062|ref|NP_502377.2| hypothetical protein C25G4.3 [Caenorhabditis elegans]
gi|115530266|emb|CAA94572.2| C. elegans protein C25G4.3a, confirmed by transcript evidence
[Caenorhabditis elegans]
Length = 227
Score = 41.1 bits (96), Expect = 0.057, Method: Composition-based stats.
Identities = 20/101 (19%), Positives = 40/101 (39%), Gaps = 3/101 (2%)
Query: 18 EVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNC 77
++ L I D ++ R + I+ V + +VY D + ++ L
Sbjct: 88 QLSRILEERIAEVVATDEMLGRLQLQITRVRVDRAFTQVSVYWMCRGDGDSE-IVDFLEE 146
Query: 78 NIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ IR R+ S+ PE++F D +L +++ L
Sbjct: 147 SKHQIRRRVEESIGI--TCPEVKFIGDKALLMEQEMDKLFR 185
>gi|170579421|ref|XP_001894824.1| hypothetical protein Bm1_16835 [Brugia malayi]
gi|158598447|gb|EDP36335.1| hypothetical protein Bm1_16835 [Brugia malayi]
Length = 216
Score = 40.7 bits (95), Expect = 0.060, Method: Composition-based stats.
Identities = 25/121 (20%), Positives = 45/121 (37%), Gaps = 11/121 (9%)
Query: 1 MKNKNPKNSRRAL------RVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLR 54
M + K RR L R+G L ++ DR + + + +V + +
Sbjct: 100 MLDVGKKPKRRKLDEAKRNRLGRMFMEHLFQILCE---HDRFCDIEGLELYKVDVGPTFK 156
Query: 55 VATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTS-LQSYWKL 113
V VY D S + L + F+R R+ L + VP L F + + ++
Sbjct: 157 VMDVYWLAKGDKSDEITEKVLKESENFVRKRLS-ELLSTHNVPRLTFVAERKHIVEQVRI 215
Query: 114 N 114
+
Sbjct: 216 D 216
>gi|315636535|ref|ZP_07891771.1| ribosome-binding factor A [Arcobacter butzleri JV22]
gi|315479184|gb|EFU69881.1| ribosome-binding factor A [Arcobacter butzleri JV22]
Length = 119
Score = 40.7 bits (95), Expect = 0.073, Method: Composition-based stats.
Identities = 25/115 (21%), Positives = 40/115 (34%), Gaps = 13/115 (11%)
Query: 17 EEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRV-ATVYI--SLPLDVSPDRVIS 73
E + AL + D I+ I+ V + + A VY S +IS
Sbjct: 15 ELIPQALSNL------DDERINSLPIT--GVNC-KNGKYDAIVYFDGSDFDKDEIKAIIS 65
Query: 74 ALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALEK 128
LN I+ + S + P F DTSL+ + L + + E+
Sbjct: 66 LLNRANGRIKSDVLASTSWYKC-PNFTFVNDTSLEKSKHIEDLFAQIRKTKSSEE 119
>gi|118474708|ref|YP_892626.1| ribosome-binding factor A [Campylobacter fetus subsp. fetus 82-40]
gi|261885774|ref|ZP_06009813.1| ribosome-binding factor A [Campylobacter fetus subsp. venerealis
str. Azul-94]
gi|118413934|gb|ABK82354.1| ribosome-binding factor A [Campylobacter fetus subsp. fetus 82-40]
Length = 122
Score = 40.3 bits (94), Expect = 0.087, Method: Composition-based stats.
Identities = 17/87 (19%), Positives = 33/87 (37%), Gaps = 5/87 (5%)
Query: 44 ISEVCMSVDLRVATVYIS--LPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRF 101
+++V A VY+ + D V+ L K I+ + + P F
Sbjct: 36 VTDVECKKGRYDAFVYLDKMMLDDKEQSYVLEHLKRVSKHIQNHCMSAEGWYK-APNFHF 94
Query: 102 RYDTSLQSYWKLNALMCLPKIPVALEK 128
++D L+ ++ L K+ L+K
Sbjct: 95 KFDDRLEYQNHIDKLFS--KVSDELDK 119
>gi|162451960|ref|YP_001614327.1| hypothetical protein sce3687 [Sorangium cellulosum 'So ce 56']
gi|161162542|emb|CAN93847.1| hypothetical protein predicted by Glimmer/Critica [Sorangium
cellulosum 'So ce 56']
Length = 127
Score = 40.3 bits (94), Expect = 0.091, Method: Composition-based stats.
Identities = 14/98 (14%), Positives = 39/98 (39%), Gaps = 6/98 (6%)
Query: 6 PKNSRRALR-VGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL 64
++++R R + +V+ A+ + +D ++ + V + D V + +
Sbjct: 27 ARSAQRKERQLCRQVQEAVSDALA--ALRDDVLQDVW--VMGVEPAPDASRLAVVVQVRP 82
Query: 65 DVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFR 102
P+ + L ++R + ++ + P L F+
Sbjct: 83 GTPPEVAAARLEKVAGYVRAEVAGAITR-KRAPTLAFQ 119
>gi|145354418|ref|XP_001421482.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144581719|gb|ABO99775.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 220
Score = 40.3 bits (94), Expect = 0.099, Method: Composition-based stats.
Identities = 20/103 (19%), Positives = 42/103 (40%), Gaps = 7/103 (6%)
Query: 12 ALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRV 71
+R VR AL V+ ++ + +S D + TV++ +
Sbjct: 56 QIRQSARVRKALKRVVHEELAH--KFDGTGANVMDARVSKDFK--TVHVLYGTTRMGEEH 111
Query: 72 IS--ALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWK 112
I+ AL N + IR + + + +++ P L FR++ + +
Sbjct: 112 IAGNALERNAQKIRTMLSK-MLTMKHTPRLVFRFEGARSEAQR 153
>gi|73945369|ref|XP_848511.1| PREDICTED: similar to CG15916-PA [Canis familiaris]
Length = 260
Score = 39.9 bits (93), Expect = 0.10, Method: Composition-based stats.
Identities = 19/101 (18%), Positives = 40/101 (39%), Gaps = 5/101 (4%)
Query: 21 SALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI-SLPLDVSPDRVISALNCNI 79
ALM ++ E + I + +S+V ++ D VY + + L +
Sbjct: 35 KALMDLLCTPEVS-QEICDLDVQLSKVSLTADFSACRVYWKTTVSAKQSAHTEAVLRGSA 93
Query: 80 KFIRGRI-GRSLRNLRYVPELRFRYDTSLQSYWKLNALMCL 119
+R + + + LR VP + F D + +++ L+
Sbjct: 94 AHMRHLLMAQQI--LRNVPPIVFIQDRGSLALAEVDRLLAS 132
>gi|88608159|ref|YP_506407.1| putative ribosome-binding factor A [Neorickettsia sennetsu str.
Miyayama]
gi|88600328|gb|ABD45796.1| putative ribosome-binding factor A [Neorickettsia sennetsu str.
Miyayama]
Length = 97
Score = 39.9 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 21/89 (23%), Positives = 35/89 (39%), Gaps = 14/89 (15%)
Query: 13 LRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVI 72
LRV +R + +I V ++S V ++ + R ATV + L +
Sbjct: 7 LRVESLLRRKITEIINK-------TFGPVAAVSNVEITDNSRFATVSLQLFNGAPEPHEV 59
Query: 73 SALNCNIKFIRGRIGRSLRNLRYVPELRF 101
I+ +IG+ L +R P L F
Sbjct: 60 EN------SIKAKIGKYL-EMRNTPRLHF 81
>gi|154173886|ref|YP_001408784.1| ribosome-binding factor A [Campylobacter curvus 525.92]
gi|112802232|gb|EAT99576.1| ribosome-binding factor A [Campylobacter curvus 525.92]
Length = 121
Score = 39.9 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 15/87 (17%), Positives = 35/87 (40%), Gaps = 5/87 (5%)
Query: 44 ISEVCMSVDLRVATVYI--SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRF 101
+++V A VY+ + + + +++ L + ++ + R P F
Sbjct: 36 VTDVECKKGRYDAFVYLDKTPFDEREQEYILAHLKRVTRHLQNHCMAAEGWYRC-PNFHF 94
Query: 102 RYDTSLQSYWKLNALMCLPKIPVALEK 128
++D L+ ++ L KI L+K
Sbjct: 95 KFDDRLEYQNHMDKLF--DKISKDLDK 119
>gi|68525510|ref|XP_723617.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
gi|23477968|gb|EAA15182.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 553
Score = 39.2 bits (91), Expect = 0.17, Method: Composition-based stats.
Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 4/98 (4%)
Query: 9 SRRALRVGEEVRSALMWVIL--NNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-D 65
+RR +RV + + + L ++ N+ F+ L+ ISI + M + + + SL D
Sbjct: 409 NRRKIRVEKLLHTHLEQLLNCNNSYFKFYLLKGLHISIHHLEMKSNRSLCKIVYSLLNKD 468
Query: 66 VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRY 103
V+ + + L+ +R + R L L Y P L+F
Sbjct: 469 VTHEMIQEKLDKVAFILRKLLARKL-QLGYTPPLKFVP 505
>gi|291201268|emb|CBK55579.1| C. elegans protein C25G4.3b, confirmed by transcript evidence
[Caenorhabditis elegans]
Length = 173
Score = 39.2 bits (91), Expect = 0.19, Method: Composition-based stats.
Identities = 20/101 (19%), Positives = 40/101 (39%), Gaps = 3/101 (2%)
Query: 18 EVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNC 77
++ L I D ++ R + I+ V + +VY D + ++ L
Sbjct: 34 QLSRILEERIAEVVATDEMLGRLQLQITRVRVDRAFTQVSVYWMCRGDGDSE-IVDFLEE 92
Query: 78 NIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+ IR R+ S+ PE++F D +L +++ L
Sbjct: 93 SKHQIRRRVEESIGI--TCPEVKFIGDKALLMEQEMDKLFR 131
>gi|242309142|ref|ZP_04808297.1| ribosome-binding factor A [Helicobacter pullorum MIT 98-5489]
gi|239524183|gb|EEQ64049.1| ribosome-binding factor A [Helicobacter pullorum MIT 98-5489]
Length = 123
Score = 39.2 bits (91), Expect = 0.21, Method: Composition-based stats.
Identities = 24/123 (19%), Positives = 49/123 (39%), Gaps = 13/123 (10%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
MKN + ++ L+ E + +AL + D ++ +++ EV S A V++
Sbjct: 1 MKNIKLERTQSLLK--ELIPTALANL------NDTRLNA--LNVIEVKCSRGKYSAQVFL 50
Query: 61 --SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
S +++ L I+ R P+ +F +D SL+ KL+ +
Sbjct: 51 DSSSLDKQEQKEILNQLKKAKNLIKEYCLEETGWFRC-PDFQFFFDESLEIENKLDKIFR 109
Query: 119 LPK 121
+
Sbjct: 110 TIE 112
>gi|224419194|ref|ZP_03657200.1| ribosome-binding factor A [Helicobacter canadensis MIT 98-5491]
gi|253828124|ref|ZP_04871009.1| ribosome-binding factor A [Helicobacter canadensis MIT 98-5491]
gi|313142698|ref|ZP_07804891.1| ribosome-binding factor A [Helicobacter canadensis MIT 98-5491]
gi|253511530|gb|EES90189.1| ribosome-binding factor A [Helicobacter canadensis MIT 98-5491]
gi|313131729|gb|EFR49346.1| ribosome-binding factor A [Helicobacter canadensis MIT 98-5491]
Length = 123
Score = 39.2 bits (91), Expect = 0.21, Method: Composition-based stats.
Identities = 23/121 (19%), Positives = 47/121 (38%), Gaps = 13/121 (10%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
MKN + ++ L+ E + AL + D ++ +++ EV S A V++
Sbjct: 1 MKNIKLERTQSLLK--ELIPMALANL------NDTRLNS--LNVIEVKCSKGKYSAQVFL 50
Query: 61 --SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
S +++ L I+ R P+ +F +D SL+ +L+ +
Sbjct: 51 ESSFLTKKEQTEILNQLKKARSLIKEYCLEETGWFRC-PDFQFFFDDSLEKENRLDQIFH 109
Query: 119 L 119
Sbjct: 110 T 110
>gi|68065574|ref|XP_674770.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56493556|emb|CAH96940.1| conserved hypothetical protein [Plasmodium berghei]
Length = 553
Score = 38.8 bits (90), Expect = 0.23, Method: Composition-based stats.
Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 4/98 (4%)
Query: 9 SRRALRVGEEVRSALMWVIL--NNEFQDRLISRDVISISEVCMSVDLRVATVYISLPL-D 65
+RR +RV + + + L ++ N+ F+ L+ ISI + M + + + SL D
Sbjct: 409 NRRKIRVEKLLHTHLEQLLNCNNSYFKFYLLKGLHISIHHLEMKSNRSLCKIVYSLLNKD 468
Query: 66 VSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRY 103
V+ + + L+ +R + R L L Y P L+F
Sbjct: 469 VTHEMIQEKLDKVAFILRKLLARKL-QLGYTPPLKFVP 505
>gi|294785015|ref|ZP_06750303.1| conserved hypothetical protein [Fusobacterium sp. 3_1_27]
gi|294486729|gb|EFG34091.1| conserved hypothetical protein [Fusobacterium sp. 3_1_27]
Length = 303
Score = 38.8 bits (90), Expect = 0.29, Method: Composition-based stats.
Identities = 13/54 (24%), Positives = 30/54 (55%), Gaps = 7/54 (12%)
Query: 46 EVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPEL 99
+V ++ D T+Y++ ++ + + V LN ++ F +G+ L+ R +PE+
Sbjct: 51 KVKVNKD----TIYLNHFINKTKEGVFKGLNNDLLF---ELGKELKFYRGIPEI 97
>gi|160774158|gb|AAI55519.1| Unknown (protein for IMAGE:7821681) [Xenopus (Silurana) tropicalis]
Length = 351
Score = 38.4 bits (89), Expect = 0.32, Method: Composition-based stats.
Identities = 20/120 (16%), Positives = 44/120 (36%), Gaps = 5/120 (4%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
+ + ++S R + + AL ++ + + + + +S+V +S D V Y
Sbjct: 86 QRKEKREDSVRIRALNSILYKALTDLLQTSAIS-QEVCDLNVELSKVSVSADFLVCRAYW 144
Query: 61 SLPLDVSPDRVIS-ALNCNIKFIRG-RIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
++ D I L R + + L VP++ F D ++ L+
Sbjct: 145 MTSGNLDTDNQIELVLQKYAPQFRHLMLTHQV--LGSVPQVVFVRDKEDAMVQEVERLLA 202
>gi|226372194|gb|ACO51722.1| ribosome-binding factor A, mitochondrial precursor [Rana
catesbeiana]
Length = 352
Score = 38.4 bits (89), Expect = 0.33, Method: Composition-based stats.
Identities = 24/120 (20%), Positives = 43/120 (35%), Gaps = 5/120 (4%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVY- 59
K + +N+ R + + AL ++ +E D + I +S+V +S D V Y
Sbjct: 96 QKAEKKENNIRIKTLNVILYDALTSLLGTSEVSD-EVPELCIELSKVSVSADFSVCRAYW 154
Query: 60 ISLPLDVSPDRVISALNCNIKFIRG-RIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
+S + + L R I + L VP + F D ++ L
Sbjct: 155 LSSGSKDTDAEIEKVLQKYAPRFRHLMISHHV--LGNVPPVVFVRDKEDAKRQEVEDLFT 212
>gi|308481083|ref|XP_003102747.1| hypothetical protein CRE_29950 [Caenorhabditis remanei]
gi|308260833|gb|EFP04786.1| hypothetical protein CRE_29950 [Caenorhabditis remanei]
Length = 194
Score = 38.4 bits (89), Expect = 0.37, Method: Composition-based stats.
Identities = 23/113 (20%), Positives = 41/113 (36%), Gaps = 15/113 (13%)
Query: 13 LRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVI 72
RVGE + D + + + I+ V + +VY + + VI
Sbjct: 59 ERVGEVI------------ATDETLGQLQLQITRVRVDRGFTQVSVYWMCRGEGDLE-VI 105
Query: 73 SALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
L+ I+ RI S+ PE++F D SL +++ L +
Sbjct: 106 DILDKTKNQIKRRISESIGI--TCPEMKFIGDKSLLMEQEMDKLFREADYGID 156
>gi|38230184|gb|AAR14187.1| ink toxin 3 [Aplysia punctata]
Length = 517
Score = 38.0 bits (88), Expect = 0.41, Method: Composition-based stats.
Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 7/52 (13%)
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
++ L N ++ + L VP+ RF YD S L+ P+
Sbjct: 149 EKLTGLKLNGGPLKREVALKLT----VPDGRFLYDLSFDEAM---DLVASPE 193
>gi|315639112|ref|ZP_07894279.1| ribosome-binding factor A [Campylobacter upsaliensis JV21]
gi|315480816|gb|EFU71453.1| ribosome-binding factor A [Campylobacter upsaliensis JV21]
Length = 118
Score = 38.0 bits (88), Expect = 0.41, Method: Composition-based stats.
Identities = 14/72 (19%), Positives = 27/72 (37%), Gaps = 3/72 (4%)
Query: 56 ATVYIS--LPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKL 113
A VY+ +R+++AL + ++ R P F++D L+ +
Sbjct: 46 AFVYLDKMFLNTHEQERILNALKKASRALQNYCMSEQGWYRC-PNFHFKFDDRLEYQNHM 104
Query: 114 NALMCLPKIPVA 125
+AL K
Sbjct: 105 DALFEKIKRKND 116
>gi|256845810|ref|ZP_05551268.1| LOW QUALITY PROTEIN: conserved hypothetical protein
[Fusobacterium sp. 3_1_36A2]
gi|256719369|gb|EEU32924.1| LOW QUALITY PROTEIN: conserved hypothetical protein
[Fusobacterium sp. 3_1_36A2]
Length = 269
Score = 38.0 bits (88), Expect = 0.42, Method: Composition-based stats.
Identities = 12/54 (22%), Positives = 30/54 (55%), Gaps = 7/54 (12%)
Query: 46 EVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPEL 99
+V ++ D T+Y++ ++ + + V LN ++ F +G+ L+ + +PE+
Sbjct: 30 KVKVNKD----TIYLNHFINKTKEGVFKGLNNDLLF---ELGKELKFYKGIPEI 76
>gi|327270072|ref|XP_003219815.1| PREDICTED: putative ribosome-binding factor A, mitochondrial-like
[Anolis carolinensis]
Length = 369
Score = 38.0 bits (88), Expect = 0.42, Method: Composition-based stats.
Identities = 17/112 (15%), Positives = 42/112 (37%), Gaps = 10/112 (8%)
Query: 16 GEEVRSALMWVILNNEFQD--------RLISRDVISISEVCMSVDLRVATVYISLPLDVS 67
G+ R ++ V+L +D + + + +S+ ++ D + +Y ++
Sbjct: 111 GDSTRKKVLNVLLFKAVRDVLSTCDAGQEVYDLCVELSKASLTSDFSICRIYWRTTGNIE 170
Query: 68 PDR-VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
D + L + IR + + + VP + F D ++ L+
Sbjct: 171 QDDHIEKVLQKSAPRIRHILITY-QVMGNVPSIVFVRDKEDAVVKEIERLLA 221
>gi|237740396|ref|ZP_04570877.1| conserved hypothetical protein [Fusobacterium sp. 2_1_31]
gi|229422413|gb|EEO37460.1| conserved hypothetical protein [Fusobacterium sp. 2_1_31]
Length = 311
Score = 38.0 bits (88), Expect = 0.44, Method: Composition-based stats.
Identities = 12/53 (22%), Positives = 28/53 (52%), Gaps = 7/53 (13%)
Query: 47 VCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPEL 99
V ++ D T+Y++ ++ + + V LN + F +G+ L+ + +PE+
Sbjct: 60 VKVNRD----TIYLNHFINKTKEGVFKGLNNKVLF---ELGKELKFYKGIPEI 105
>gi|254796880|ref|YP_003081717.1| putative ribosome-binding factor A [Neorickettsia risticii str.
Illinois]
gi|254590116|gb|ACT69478.1| putative ribosome-binding factor A [Neorickettsia risticii str.
Illinois]
Length = 97
Score = 38.0 bits (88), Expect = 0.44, Method: Composition-based stats.
Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 16/90 (17%)
Query: 13 LRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDV-SPDRV 71
LRV +R + +I V ++S V ++ + R A V + L P V
Sbjct: 7 LRVESLLRRKITEIINK-------TFGPVAAVSNVEITDNSRFAMVSLQLFNGAPEPREV 59
Query: 72 ISALNCNIKFIRGRIGRSLRNLRYVPELRF 101
+ I+ +IG+SL +R P+L F
Sbjct: 60 ENG-------IKAKIGKSL-EMRKTPKLHF 81
>gi|154148776|ref|YP_001407190.1| ribosome-binding factor A [Campylobacter hominis ATCC BAA-381]
gi|153804785|gb|ABS51792.1| ribosome-binding factor A [Campylobacter hominis ATCC BAA-381]
Length = 120
Score = 38.0 bits (88), Expect = 0.45, Method: Composition-based stats.
Identities = 22/120 (18%), Positives = 45/120 (37%), Gaps = 14/120 (11%)
Query: 16 GEEVRS-----ALMWVILNN--EFQDRLISRDVISISEVCMSVDLRVATVYI-SLPLDVS 67
E++ AL ++ D ++ + +++V A VY+ + LD
Sbjct: 3 AAEIKRLRTESALKEILPEAFASLDDTMLKG--LCVTDVDCKKGRYDAFVYLDKMALDER 60
Query: 68 PDR-VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVAL 126
V++ L K ++ R P F++D SL+ +++ L K+ L
Sbjct: 61 EQEYVLTHLKKVSKILQNYCVCEFGWFR-APNFHFKFDDSLEHQNRMDELFS--KVEKEL 117
>gi|89267877|emb|CAJ82370.1| novel protein [Xenopus (Silurana) tropicalis]
Length = 284
Score = 38.0 bits (88), Expect = 0.45, Method: Composition-based stats.
Identities = 20/120 (16%), Positives = 44/120 (36%), Gaps = 5/120 (4%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI 60
+ + ++S R + + AL ++ + + + + +S+V +S D V Y
Sbjct: 91 QRKEKREDSVRIRALNSILYKALTDLLQTSAIS-QEVCDLNVELSKVSVSADFLVCRAYW 149
Query: 61 SLPLDVSPDRVIS-ALNCNIKFIRG-RIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMC 118
++ D I L R + + L VP++ F D ++ L+
Sbjct: 150 MTSGNLDTDNQIELVLQKYAPQFRHLMLTHQV--LGSVPQVVFVRDKEDAMVQEVERLLA 207
>gi|262067453|ref|ZP_06027065.1| conserved hypothetical protein [Fusobacterium periodonticum ATCC
33693]
gi|291378815|gb|EFE86333.1| conserved hypothetical protein [Fusobacterium periodonticum ATCC
33693]
Length = 303
Score = 38.0 bits (88), Expect = 0.47, Method: Composition-based stats.
Identities = 13/53 (24%), Positives = 28/53 (52%), Gaps = 7/53 (13%)
Query: 47 VCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPEL 99
V ++ D T+Y++ ++ + + V LN + F +GR L+ + +PE+
Sbjct: 52 VKVNRD----TIYLNHFINKTKEGVFKGLNNKVLF---ELGRELKFYKGIPEI 97
>gi|57505607|ref|ZP_00371534.1| ribosome-binding factor A [Campylobacter upsaliensis RM3195]
gi|57016154|gb|EAL52941.1| ribosome-binding factor A [Campylobacter upsaliensis RM3195]
Length = 118
Score = 38.0 bits (88), Expect = 0.48, Method: Composition-based stats.
Identities = 17/116 (14%), Positives = 38/116 (32%), Gaps = 8/116 (6%)
Query: 17 EEVRS-----ALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS--LPLDVSPD 69
E++ L +I ++ + + +V A VY+ +
Sbjct: 2 SEIKKLRTESILKELIPEALAHLDDVNLKNLCVVDVECRKGRYDAFVYLDKMFLNTHEQE 61
Query: 70 RVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
R+++AL + ++ R P F++D L+ ++ L K
Sbjct: 62 RILNALKKASRALQNYCMSEQGWYRC-PNFHFKFDDRLEYQNHIDTLFEKIKRKND 116
>gi|312082340|ref|XP_003143405.1| hypothetical protein LOAG_07824 [Loa loa]
gi|307761434|gb|EFO20668.1| hypothetical protein LOAG_07824 [Loa loa]
Length = 232
Score = 37.6 bits (87), Expect = 0.50, Method: Composition-based stats.
Identities = 24/106 (22%), Positives = 44/106 (41%), Gaps = 8/106 (7%)
Query: 1 MKNKNPKNSRRALRVGEEVRSALMWVILNNEF-----QDRLISRDVISISEVCMSVDLRV 55
M + K +R ++ E R+ L + L + F DR + + + +V + +V
Sbjct: 82 MLDVGKKPKQR--KLNEAKRNRLGRMFLEHVFQILCEHDRFCDIEGLELYKVDVGPTFKV 139
Query: 56 ATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRF 101
VY D S + + L + F+R R+ L + +P L F
Sbjct: 140 MDVYWLAKGDKSDEIIEKVLKGSEDFVRKRLSELLGS-HNIPRLTF 184
>gi|78776876|ref|YP_393191.1| ribosome-binding factor A [Sulfurimonas denitrificans DSM 1251]
gi|78497416|gb|ABB43956.1| Ribosome-binding factor A [Sulfurimonas denitrificans DSM 1251]
Length = 116
Score = 37.6 bits (87), Expect = 0.50, Method: Composition-based stats.
Identities = 18/90 (20%), Positives = 28/90 (31%), Gaps = 5/90 (5%)
Query: 30 NEFQDRLISRDVISISEVCMSVDLRVATVYI--SLPLDVSPDRVISALNCNIKFIRGRIG 87
D + + + I +V S A VYI S + + I L +
Sbjct: 24 GSLNDERLHQ--LDIIDVKCSRGRSDAKVYIHPSSYTEQEKNEFIKLLKNARPIVETYCM 81
Query: 88 RSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
++ R P L F +D L L
Sbjct: 82 KNQGWFR-SPTLTFEFDEQFVKAQSLEELF 110
>gi|308453639|ref|XP_003089520.1| hypothetical protein CRE_23233 [Caenorhabditis remanei]
gi|308239986|gb|EFO83938.1| hypothetical protein CRE_23233 [Caenorhabditis remanei]
Length = 194
Score = 37.6 bits (87), Expect = 0.53, Method: Composition-based stats.
Identities = 23/113 (20%), Positives = 41/113 (36%), Gaps = 15/113 (13%)
Query: 13 LRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVI 72
RVGE + D + + + I+ V + +VY + + VI
Sbjct: 59 ERVGEVI------------ATDETLGQLQLQITRVRVDRGFTQVSVYWMCRGEGDLE-VI 105
Query: 73 SALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
L+ I+ RI S+ PE++F D SL +++ L +
Sbjct: 106 DILDQTKNQIKRRISESIGI--TCPEMKFIGDKSLLMKQEMDKLFREADYGID 156
>gi|296327267|ref|ZP_06869822.1| conserved hypothetical protein [Fusobacterium nucleatum subsp.
nucleatum ATCC 23726]
gi|296155624|gb|EFG96386.1| conserved hypothetical protein [Fusobacterium nucleatum subsp.
nucleatum ATCC 23726]
Length = 303
Score = 37.6 bits (87), Expect = 0.54, Method: Composition-based stats.
Identities = 12/54 (22%), Positives = 30/54 (55%), Gaps = 7/54 (12%)
Query: 46 EVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPEL 99
+V ++ D T+Y++ ++ + + V LN ++ F +G+ L+ + +PE+
Sbjct: 51 KVKVNKD----TIYLNHFINKTKEGVFKGLNNDLLF---ELGKELKFYKGIPEI 97
>gi|281212482|gb|EFA86642.1| hypothetical protein PPL_00443 [Polysphondylium pallidum PN500]
Length = 807
Score = 37.6 bits (87), Expect = 0.58, Method: Composition-based stats.
Identities = 13/46 (28%), Positives = 24/46 (52%)
Query: 24 MWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPD 69
M + ++E D ++++ IS+++ MS DLR VY + V
Sbjct: 356 MEQLDSDEIVDPILAKANISLTKAKMSSDLRWVKVYWTRENTVDEQ 401
>gi|87309389|ref|ZP_01091525.1| hypothetical protein DSM3645_22339 [Blastopirellula marina DSM
3645]
gi|87288028|gb|EAQ79926.1| hypothetical protein DSM3645_22339 [Blastopirellula marina DSM
3645]
Length = 102
Score = 37.2 bits (86), Expect = 0.69, Method: Composition-based stats.
Identities = 16/85 (18%), Positives = 34/85 (40%), Gaps = 6/85 (7%)
Query: 22 ALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL---PLDVSPDRVISALNCN 78
+ ++L+ E D + + EV + D V +S D PD +++ L+
Sbjct: 9 ETLEMVLSGEIDDDRLPILH--VVEVVPAPDSSRMLVTLSADIAATDDDPDEILNTLSEY 66
Query: 79 IKFIRGRIGRSLRNLRYVPELRFRY 103
+R + ++ + P+L F
Sbjct: 67 ADLLRMEVAAAIHR-KKAPQLLFHL 90
>gi|257460848|ref|ZP_05625949.1| ribosome-binding factor A [Campylobacter gracilis RM3268]
gi|257442179|gb|EEV17321.1| ribosome-binding factor A [Campylobacter gracilis RM3268]
Length = 121
Score = 37.2 bits (86), Expect = 0.72, Method: Composition-based stats.
Identities = 18/113 (15%), Positives = 45/113 (39%), Gaps = 7/113 (6%)
Query: 11 RALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI--SLPLDVSP 68
R LR ++ + + + +D L+ + +++V A VY+ + +
Sbjct: 7 RRLRTQSVLKQLIPEALAS--LEDELLRG--LCVTDVECKRGRYDAFVYLDKNAFDEREQ 62
Query: 69 DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
+ V+ L ++++ + R P F++D L+ K++ L +
Sbjct: 63 EFVLEKLGRVARYLQNFCAEAEGWYRC-PAFHFKFDDRLEYQNKMDDLFDKIE 114
>gi|223038592|ref|ZP_03608885.1| ribosome-binding factor A [Campylobacter rectus RM3267]
gi|255322000|ref|ZP_05363150.1| ribosome-binding factor A [Campylobacter showae RM3277]
gi|222879994|gb|EEF15082.1| ribosome-binding factor A [Campylobacter rectus RM3267]
gi|255301104|gb|EET80371.1| ribosome-binding factor A [Campylobacter showae RM3277]
Length = 123
Score = 37.2 bits (86), Expect = 0.73, Method: Composition-based stats.
Identities = 24/126 (19%), Positives = 47/126 (37%), Gaps = 10/126 (7%)
Query: 5 NPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS--L 62
NP +R LR ++ L + +D L+ + +++V A VY+ +
Sbjct: 2 NPSEIKR-LRTQSVLKELLPEALS--TLEDELLRG--LCVTDVECKKGRYDAFVYLDKMM 56
Query: 63 PLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKI 122
+ ++ L K ++ + R P F++D L+ ++ L KI
Sbjct: 57 FDEREQAYILDRLKRVSKHLQNHCMAAEGWYR-APNFHFKFDDRLEYQNHMDDLF--EKI 113
Query: 123 PVALEK 128
L K
Sbjct: 114 SEDLNK 119
>gi|237745191|ref|ZP_04575672.1| conserved hypothetical protein [Fusobacterium sp. 7_1]
gi|229432420|gb|EEO42632.1| conserved hypothetical protein [Fusobacterium sp. 7_1]
Length = 303
Score = 37.2 bits (86), Expect = 0.78, Method: Composition-based stats.
Identities = 12/54 (22%), Positives = 29/54 (53%), Gaps = 7/54 (12%)
Query: 46 EVCMSVDLRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPEL 99
+V ++ D T+Y++ + + + V LN ++ F +G+ L+ + +PE+
Sbjct: 51 KVKVNKD----TIYLNHFISKTKEGVFKGLNNDLLF---ELGKELKFYKGIPEI 97
>gi|325973214|ref|YP_004250278.1| ribosome-binding factor A [Mycoplasma suis str. Illinois]
gi|325989658|ref|YP_004249357.1| ribosome-binding factor A [Mycoplasma suis KI3806]
gi|323574743|emb|CBZ40399.1| Ribosome-binding factor A [Mycoplasma suis]
gi|323651816|gb|ADX97898.1| ribosome-binding factor A [Mycoplasma suis str. Illinois]
Length = 114
Score = 36.9 bits (85), Expect = 1.0, Method: Composition-based stats.
Identities = 17/83 (20%), Positives = 33/83 (39%), Gaps = 4/83 (4%)
Query: 40 DVISISEVCMSVDLRVATVYISLPLDVSP---DRVISALNCNIKFIRGRIGRSLRNLRYV 96
I I+ V ++ +L +Y+ L L ++ L F++ R+ L Y
Sbjct: 30 TFIGINHVKLAPNLSTIVIYVDLELLKDKHSSKEILDKLRKLTPFLKHRLIEKLSLPTYF 89
Query: 97 PELRFRYDTSLQSYWKLNALMCL 119
+L F D ++ K+ L+
Sbjct: 90 -KLVFEEDHFIKQARKVETLINQ 111
>gi|46198859|ref|YP_004526.1| hypothetical protein TTC0551 [Thermus thermophilus HB27]
gi|55980876|ref|YP_144173.1| ribosome-binding factor A [Thermus thermophilus HB8]
gi|145579205|pdb|2DYJ|A Chain A, Crystal Structure Of Ribosome-Binding Factor A From
Thermus Thermophilus Hb8
gi|145579206|pdb|2DYJ|B Chain B, Crystal Structure Of Ribosome-Binding Factor A From
Thermus Thermophilus Hb8
gi|170292337|pdb|2R1C|A Chain A, Coordinates Of The Thermus Thermophilus Ribosome Binding
Factor A (Rbfa) Homology Model As Fitted Into The
Cryo-Em Map Of A 30s-Rbfa Complex
gi|46196482|gb|AAS80899.1| hypothetical conserved protein [Thermus thermophilus HB27]
gi|55772289|dbj|BAD70730.1| ribosome-binding factor A [Thermus thermophilus HB8]
Length = 95
Score = 36.9 bits (85), Expect = 1.0, Method: Composition-based stats.
Identities = 13/70 (18%), Positives = 30/70 (42%), Gaps = 9/70 (12%)
Query: 18 EVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALNC 77
+++ AL I +D + ++++ V +S D V +VY+ + + + AL+
Sbjct: 11 QLKRALAEEIQ--ALEDPRL--FLLTVEAVRLSKDGSVLSVYVEAFREE--EGALRALSR 64
Query: 78 NIKFIRGRIG 87
R +
Sbjct: 65 AE---RRLVA 71
>gi|283955314|ref|ZP_06372814.1| ribosome-binding factor A [Campylobacter jejuni subsp. jejuni 414]
gi|283793228|gb|EFC31997.1| ribosome-binding factor A [Campylobacter jejuni subsp. jejuni 414]
Length = 120
Score = 36.9 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 19/111 (17%), Positives = 40/111 (36%), Gaps = 7/111 (6%)
Query: 13 LRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS--LPLDVSPDR 70
LR ++ + + N D + + + +V A VY+ ++
Sbjct: 9 LRTESILKELIPEALAN--LDDENLKN--LCVVDVECKKGRYDAFVYLDKMFFNVHEQEK 64
Query: 71 VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPK 121
++S+L K ++ R P F++D L+ ++AL K
Sbjct: 65 ILSSLKKASKALQNYCMSEQGWYRC-PNFHFKFDDRLEYQNHMDALFEKIK 114
>gi|259156566|gb|ACV96509.1| ribosome-binding factor A [Vibrio fluvialis Ind1]
Length = 44
Score = 36.9 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 96 VPELRFRYDTSLQSYWKLNALMC 118
PE+RF YD +L +++ L+
Sbjct: 2 TPEIRFYYDNTLVEGMRMSNLVT 24
>gi|222823264|ref|YP_002574837.1| ribosome-binding factor A [Campylobacter lari RM2100]
gi|222538485|gb|ACM63586.1| ribosome-binding factor A [Campylobacter lari RM2100]
Length = 120
Score = 36.5 bits (84), Expect = 1.3, Method: Composition-based stats.
Identities = 12/68 (17%), Positives = 26/68 (38%), Gaps = 3/68 (4%)
Query: 56 ATVYIS--LPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKL 113
A VY+ +++++ L + ++ R P F++D L+ +
Sbjct: 48 AFVYLDKMFFNTQEQEKILNQLKKATRALQNYCMSEQGWYRC-PNFHFKFDDRLEYQNHM 106
Query: 114 NALMCLPK 121
+AL K
Sbjct: 107 DALFEKIK 114
>gi|300114475|ref|YP_003761050.1| excinuclease ABC subunit B [Nitrosococcus watsonii C-113]
gi|299540412|gb|ADJ28729.1| excinuclease ABC, B subunit [Nitrosococcus watsonii C-113]
Length = 701
Score = 36.5 bits (84), Expect = 1.3, Method: Composition-based stats.
Identities = 22/97 (22%), Positives = 42/97 (43%), Gaps = 18/97 (18%)
Query: 12 ALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVAT--VYISL-----PL 64
R+ E L + +E + R + D+ ++ V + DLR+ V + + L
Sbjct: 454 TKRMAE----DLTQYLEQHEVRVRYLHSDIDTVERVEIIRDLRLGKFDVLVGINLLREGL 509
Query: 65 DVSPDRVISALNCNI-KFIRGR------IGRSLRNLR 94
D+ +++ L+ + F+R IGR+ RNL
Sbjct: 510 DIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLH 546
>gi|153864055|ref|ZP_01997071.1| hypothetical protein BGS_0134 [Beggiatoa sp. SS]
gi|152146454|gb|EDN72933.1| hypothetical protein BGS_0134 [Beggiatoa sp. SS]
Length = 139
Score = 36.5 bits (84), Expect = 1.3, Method: Composition-based stats.
Identities = 24/107 (22%), Positives = 46/107 (42%), Gaps = 11/107 (10%)
Query: 2 KNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI- 60
K K R+ +V ++ L +++ E+ + L+ ++S V + D V +
Sbjct: 32 KQPINKTHRKTYQVCKQAEKTL-NLVMAGEWVEPLLRELIVS--AVQPNPDSAHLLVIVE 88
Query: 61 ----SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRY 103
S+ LD D V+SAL +R I ++ N + P + F +
Sbjct: 89 PISTSVLLD--QDEVLSALLRAKGRLRAAIATAI-NRKRTPLISFLF 132
>gi|77164648|ref|YP_343173.1| excinuclease ABC subunit B [Nitrosococcus oceani ATCC 19707]
gi|254434586|ref|ZP_05048094.1| excinuclease ABC, B subunit [Nitrosococcus oceani AFC27]
gi|90111042|sp|Q3JC03|UVRB_NITOC RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
Full=Excinuclease ABC subunit B
gi|76882962|gb|ABA57643.1| Excinuclease ABC subunit B [Nitrosococcus oceani ATCC 19707]
gi|207090919|gb|EDZ68190.1| excinuclease ABC, B subunit [Nitrosococcus oceani AFC27]
Length = 687
Score = 36.1 bits (83), Expect = 1.6, Method: Composition-based stats.
Identities = 22/97 (22%), Positives = 42/97 (43%), Gaps = 18/97 (18%)
Query: 12 ALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVAT--VYISL-----PL 64
R+ E L + +E + R + D+ ++ V + DLR+ V + + L
Sbjct: 454 TKRMAE----DLTQYLEQHEVRVRYLHSDIDTVERVEIIRDLRLGKFDVLVGINLLREGL 509
Query: 65 DVSPDRVISALNCNI-KFIRGR------IGRSLRNLR 94
D+ +++ L+ + F+R IGR+ RNL
Sbjct: 510 DIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLH 546
>gi|332528395|ref|ZP_08404389.1| excinuclease ABC subunit B [Hylemonella gracilis ATCC 19624]
gi|332042158|gb|EGI78490.1| excinuclease ABC subunit B [Hylemonella gracilis ATCC 19624]
Length = 710
Score = 36.1 bits (83), Expect = 1.8, Method: Composition-based stats.
Identities = 24/97 (24%), Positives = 43/97 (44%), Gaps = 18/97 (18%)
Query: 12 ALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVA--TVYISL-----PL 64
R+ E+ L + N + R + DV ++ V + DLR+ V + + L
Sbjct: 488 TKRMAEQ----LTDYLTENGVKVRYLHSDVDTVERVEILRDLRLGSFDVLVGINLLREGL 543
Query: 65 DVSPDRVISALNCNI-KFIRGR------IGRSLRNLR 94
D+ +++ L+ + F+R IGR+ RNLR
Sbjct: 544 DIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLR 580
>gi|153951532|ref|YP_001397396.1| ribosome-binding factor A [Campylobacter jejuni subsp. doylei
269.97]
gi|152938978|gb|ABS43719.1| ribosome-binding factor A [Campylobacter jejuni subsp. doylei
269.97]
Length = 120
Score = 35.7 bits (82), Expect = 2.0, Method: Composition-based stats.
Identities = 19/115 (16%), Positives = 41/115 (35%), Gaps = 9/115 (7%)
Query: 13 LRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS--LPLDVSPDR 70
LR ++ + + N D + + + +V A VY+ ++
Sbjct: 9 LRTESILKELIPEALAN--LDDENLKN--LCVVDVECKKGRYDAFVYLDKMFFNIHEQEK 64
Query: 71 VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
++S+L + ++ R P F++D L+ ++AL KI
Sbjct: 65 ILSSLKKASRALQNYCMSEQGWYRC-PNFHFKFDDRLEYQNHMDALF--EKIKKD 116
>gi|121612306|ref|YP_999861.1| ribosome-binding factor A [Campylobacter jejuni subsp. jejuni
81-176]
gi|167004832|ref|ZP_02270590.1| ribosome-binding factor A [Campylobacter jejuni subsp. jejuni
81-176]
gi|87250235|gb|EAQ73193.1| ribosome-binding factor A [Campylobacter jejuni subsp. jejuni
81-176]
Length = 120
Score = 35.7 bits (82), Expect = 2.0, Method: Composition-based stats.
Identities = 19/115 (16%), Positives = 41/115 (35%), Gaps = 9/115 (7%)
Query: 13 LRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS--LPLDVSPDR 70
LR ++ + + N D + + + +V A VY+ ++
Sbjct: 9 LRTESILKELIPEALAN--LDDENLKN--LCVVDVECKKGRYDAFVYLDKMFFNVHEQEK 64
Query: 71 VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
++S+L + ++ R P F++D L+ ++AL KI
Sbjct: 65 ILSSLKKASRALQNYCMSEQGWYRC-PNFHFKFDDRLEYQNHMDALF--EKIKKD 116
>gi|153873804|ref|ZP_02002263.1| conserved hypothetical protein [Beggiatoa sp. PS]
gi|152069731|gb|EDN67738.1| conserved hypothetical protein [Beggiatoa sp. PS]
Length = 140
Score = 35.7 bits (82), Expect = 2.1, Method: Composition-based stats.
Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 4/65 (6%)
Query: 42 ISISEVCMSVDLRVATVYI---SLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPE 98
+SI V + D V + S + + V+ AL +R I ++ N + VP+
Sbjct: 69 LSICTVEPNPDSSRLLVIVEPISTVVSLDKHDVLQALQRAEGRLRSAIATTI-NRKRVPQ 127
Query: 99 LRFRY 103
L F +
Sbjct: 128 LTFHF 132
>gi|237745871|ref|ZP_04576351.1| excinuclease ABC subunit B [Oxalobacter formigenes HOxBLS]
gi|229377222|gb|EEO27313.1| excinuclease ABC subunit B [Oxalobacter formigenes HOxBLS]
Length = 699
Score = 35.7 bits (82), Expect = 2.1, Method: Composition-based stats.
Identities = 23/96 (23%), Positives = 43/96 (44%), Gaps = 18/96 (18%)
Query: 12 ALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVAT--VYISL-----PL 64
R+ E+ L + N + R + D+ ++ V + DLR+ T V + + L
Sbjct: 473 TKRMAEQ----LTEFLSENGIRVRYLHSDIDTVERVEIVRDLRLGTFDVLVGINLLREGL 528
Query: 65 DVSPDRVISALNCNI-KFIRGR------IGRSLRNL 93
D+ +++ L+ + F+R IGR+ RNL
Sbjct: 529 DIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNL 564
>gi|57168692|ref|ZP_00367824.1| ribosome-binding factor A [Campylobacter coli RM2228]
gi|57237144|ref|YP_178156.1| ribosome-binding factor A [Campylobacter jejuni RM1221]
gi|86149634|ref|ZP_01067864.1| ribosome-binding factor A [Campylobacter jejuni subsp. jejuni
CF93-6]
gi|86151494|ref|ZP_01069709.1| ribosome-binding factor A [Campylobacter jejuni subsp. jejuni
260.94]
gi|86153819|ref|ZP_01072022.1| ribosome-binding factor A [Campylobacter jejuni subsp. jejuni
HB93-13]
gi|88597156|ref|ZP_01100391.1| ribosome-binding factor A [Campylobacter jejuni subsp. jejuni
84-25]
gi|148926308|ref|ZP_01809992.1| hypothetical protein Cj8486_0132 [Campylobacter jejuni subsp.
jejuni CG8486]
gi|157414450|ref|YP_001481706.1| ribosome-binding factor A [Campylobacter jejuni subsp. jejuni
81116]
gi|205356510|ref|ZP_03223274.1| hypothetical protein Cj8421_0137 [Campylobacter jejuni subsp.
jejuni CG8421]
gi|218561818|ref|YP_002343597.1| ribosome-binding factor A [Campylobacter jejuni subsp. jejuni NCTC
11168]
gi|305432679|ref|ZP_07401840.1| ribosome-binding factor A [Campylobacter coli JV20]
gi|315123739|ref|YP_004065743.1| ribosome-binding factor A [Campylobacter jejuni subsp. jejuni
ICDCCJ07001]
gi|20978663|sp|Q9PIZ0|RBFA_CAMJE RecName: Full=Ribosome-binding factor A
gi|61214667|sp|Q5HX29|RBFA_CAMJR RecName: Full=Ribosome-binding factor A
gi|172047011|sp|A8FJU2|RBFA_CAMJ8 RecName: Full=Ribosome-binding factor A
gi|57019973|gb|EAL56653.1| ribosome-binding factor A [Campylobacter coli RM2228]
gi|57165948|gb|AAW34727.1| ribosome-binding factor A [Campylobacter jejuni RM1221]
gi|85839902|gb|EAQ57161.1| ribosome-binding factor A [Campylobacter jejuni subsp. jejuni
CF93-6]
gi|85841841|gb|EAQ59088.1| ribosome-binding factor A [Campylobacter jejuni subsp. jejuni
260.94]
gi|85842780|gb|EAQ59992.1| ribosome-binding factor A [Campylobacter jejuni subsp. jejuni
HB93-13]
gi|88190217|gb|EAQ94191.1| ribosome-binding factor A [Campylobacter jejuni subsp. jejuni
84-25]
gi|112359524|emb|CAL34308.1| putative ribosome-binding factor A [Campylobacter jejuni subsp.
jejuni NCTC 11168]
gi|145844700|gb|EDK21805.1| hypothetical protein Cj8486_0132 [Campylobacter jejuni subsp.
jejuni CG8486]
gi|157385414|gb|ABV51729.1| ribosome-binding factor A [Campylobacter jejuni subsp. jejuni
81116]
gi|205345697|gb|EDZ32336.1| hypothetical protein Cj8421_0137 [Campylobacter jejuni subsp.
jejuni CG8421]
gi|284925430|gb|ADC27782.1| ribosome-binding factor A [Campylobacter jejuni subsp. jejuni
IA3902]
gi|304444390|gb|EFM37042.1| ribosome-binding factor A [Campylobacter coli JV20]
gi|307747094|gb|ADN90364.1| Ribosome-binding factor A [Campylobacter jejuni subsp. jejuni M1]
gi|315017461|gb|ADT65554.1| ribosome-binding factor A [Campylobacter jejuni subsp. jejuni
ICDCCJ07001]
gi|315057577|gb|ADT71906.1| Ribosome-binding factor A [Campylobacter jejuni subsp. jejuni S3]
gi|315926923|gb|EFV06285.1| ribosome-binding factor A [Campylobacter jejuni subsp. jejuni
DFVF1099]
gi|315928475|gb|EFV07785.1| ribosome-binding factor A [Campylobacter jejuni subsp. jejuni 305]
gi|315931532|gb|EFV10499.1| ribosome-binding factor A [Campylobacter jejuni subsp. jejuni 327]
Length = 120
Score = 35.7 bits (82), Expect = 2.1, Method: Composition-based stats.
Identities = 19/115 (16%), Positives = 41/115 (35%), Gaps = 9/115 (7%)
Query: 13 LRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS--LPLDVSPDR 70
LR ++ + + N D + + + +V A VY+ ++
Sbjct: 9 LRTESILKELIPEALAN--LDDENLKN--LCVVDVECKKGRYDAFVYLDKMFFNVHEQEK 64
Query: 71 VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
++S+L + ++ R P F++D L+ ++AL KI
Sbjct: 65 ILSSLKKASRALQNYCMSEQGWYRC-PNFHFKFDDRLEYQNHMDALF--EKIKKD 116
>gi|237748603|ref|ZP_04579083.1| excinuclease ABC subunit B [Oxalobacter formigenes OXCC13]
gi|229379965|gb|EEO30056.1| excinuclease ABC subunit B [Oxalobacter formigenes OXCC13]
Length = 697
Score = 35.7 bits (82), Expect = 2.2, Method: Composition-based stats.
Identities = 23/96 (23%), Positives = 43/96 (44%), Gaps = 18/96 (18%)
Query: 12 ALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVAT--VYISL-----PL 64
R+ E+ L + N + R + D+ ++ V + DLR+ T V + + L
Sbjct: 472 TKRMAEQ----LTDFLSENGVRVRYLHSDIDTVERVEIVRDLRLGTFDVLVGINLLREGL 527
Query: 65 DVSPDRVISALNCNI-KFIRGR------IGRSLRNL 93
D+ +++ L+ + F+R IGR+ RNL
Sbjct: 528 DIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNL 563
>gi|325181853|emb|CCA16308.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 312
Score = 35.7 bits (82), Expect = 2.2, Method: Composition-based stats.
Identities = 29/104 (27%), Positives = 45/104 (43%), Gaps = 14/104 (13%)
Query: 9 SRRALRVGEEVRSALMW-VILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS 67
S R RVG EV++ + ++ + + D I VI E S DLR ++ +
Sbjct: 174 SHRQERVGFEVQNFVQERLLSDADATDYAIYPLVI---ENSASPDLRRVILHWTPARKNQ 230
Query: 68 PDRVIS-----ALNC----NIKFIRGRIGRSLRNLRYVPELRFR 102
++ I+ AL IR + R L NL+Y P + FR
Sbjct: 231 ANQQIAKRKADALERRLLQKTGLIRSLLARHL-NLKYAPVIEFR 273
>gi|307720623|ref|YP_003891763.1| ribosome-binding factor A [Sulfurimonas autotrophica DSM 16294]
gi|306978716|gb|ADN08751.1| ribosome-binding factor A [Sulfurimonas autotrophica DSM 16294]
Length = 122
Score = 35.7 bits (82), Expect = 2.2, Method: Composition-based stats.
Identities = 20/105 (19%), Positives = 34/105 (32%), Gaps = 11/105 (10%)
Query: 15 VGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI--SLPLDVSPDRVI 72
+ E + AL + D + + + EV S A VYI S + +
Sbjct: 15 LAELIPEALSQL------NDNRLHE--LGVIEVKCSRGRSDAKVYIDPSNFTEEEKRAYL 66
Query: 73 SALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
L + + R P+L F +D L+ + L
Sbjct: 67 KQLRKARPLVEDFCLKDQGWYRC-PKLAFEFDEQLKKSQNIEDLF 110
>gi|300312456|ref|YP_003776548.1| excinuclease ABC subunit B [Herbaspirillum seropedicae SmR1]
gi|300075241|gb|ADJ64640.1| excinuclease ABC subunit B (SOS response excision nuclease DNA
repair ATP-binding) protein [Herbaspirillum seropedicae
SmR1]
Length = 693
Score = 35.3 bits (81), Expect = 2.5, Method: Composition-based stats.
Identities = 22/96 (22%), Positives = 43/96 (44%), Gaps = 18/96 (18%)
Query: 12 ALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL-------PL 64
R+ E+ L + +N + R + D+ ++ V + DLR+ T + + L
Sbjct: 473 TKRMAEQ----LTEFLSDNGIKVRYLHSDIDTVERVEIIRDLRLGTFDVVVGINLLREGL 528
Query: 65 DVSPDRVISALNCNI-KFIRGR------IGRSLRNL 93
D+ +++ L+ + F+R IGR+ RNL
Sbjct: 529 DIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNL 564
>gi|170782265|ref|YP_001710598.1| putative ATP-dependent RNA helicase [Clavibacter michiganensis
subsp. sepedonicus]
gi|169156834|emb|CAQ02001.1| putative ATP-dependent RNA helicase [Clavibacter michiganensis
subsp. sepedonicus]
Length = 520
Score = 35.3 bits (81), Expect = 2.8, Method: Composition-based stats.
Identities = 17/82 (20%), Positives = 33/82 (40%), Gaps = 18/82 (21%)
Query: 47 VCMSVDLRVATVY-----ISLPLDVSPDRVISALNCNI-------KFIRGRIGRSLRNLR 94
V ++ DL++AT + +S+ + + I L + +G+ L +L+
Sbjct: 84 VQVTEDLQIATKHRATTVVSIYGGKAYEGQIEQLKAGAQIVVGTPGRLLDLVGQRLLSLK 143
Query: 95 YVPELRFRYDTSLQSYWKLNAL 116
YV E+ L K+ L
Sbjct: 144 YVREMV------LDEADKMLDL 159
>gi|325181218|emb|CCA15632.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 308
Score = 35.3 bits (81), Expect = 2.8, Method: Composition-based stats.
Identities = 29/104 (27%), Positives = 45/104 (43%), Gaps = 14/104 (13%)
Query: 9 SRRALRVGEEVRSALMW-VILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVS 67
S R RVG EV++ + ++ + + D I VI E S DLR ++ +
Sbjct: 170 SHRQERVGFEVQNFVQERLLSDADATDYAIYPLVI---ENSASPDLRRVILHWTPARKNQ 226
Query: 68 PDRVIS-----ALNC----NIKFIRGRIGRSLRNLRYVPELRFR 102
++ I+ AL IR + R L NL+Y P + FR
Sbjct: 227 ANQQIAKRKADALERRLLQKTGLIRSLLARHL-NLKYAPVIEFR 269
>gi|121604469|ref|YP_981798.1| excinuclease ABC subunit B [Polaromonas naphthalenivorans CJ2]
gi|120593438|gb|ABM36877.1| Excinuclease ABC subunit B [Polaromonas naphthalenivorans CJ2]
Length = 702
Score = 35.3 bits (81), Expect = 3.2, Method: Composition-based stats.
Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 18/96 (18%)
Query: 12 ALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVAT--VYISL-----PL 64
R+ E+ L + N + R + DV ++ V + DLR+ T V + + L
Sbjct: 477 TKRMAEQ----LTDYLTENGVKVRYLHSDVETVERVEILRDLRLGTFDVLVGINLLREGL 532
Query: 65 DVSPDRVISALNCNI-KFIRGR------IGRSLRNL 93
D+ +++ L+ + F+R IGR+ RNL
Sbjct: 533 DIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNL 568
>gi|152979775|ref|YP_001352938.1| excinuclease ABC subunit B [Janthinobacterium sp. Marseille]
gi|151279852|gb|ABR88262.1| excinuclease ABC subunit B [Janthinobacterium sp. Marseille]
Length = 696
Score = 35.3 bits (81), Expect = 3.2, Method: Composition-based stats.
Identities = 23/96 (23%), Positives = 44/96 (45%), Gaps = 18/96 (18%)
Query: 12 ALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVAT--VYISL-----PL 64
R+ E+ L + +N + R + D+ ++ V + DLR+ T V + + L
Sbjct: 473 TKRMAEQ----LTEFLSDNGIKVRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGL 528
Query: 65 DVSPDRVISALNCNI-KFIRGR------IGRSLRNL 93
D+ +++ L+ + F+R IGR+ RNL
Sbjct: 529 DLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNL 564
>gi|157165090|ref|YP_001466378.1| ribosome-binding factor A [Campylobacter concisus 13826]
gi|112801692|gb|EAT99036.1| ribosome-binding factor A [Campylobacter concisus 13826]
Length = 121
Score = 34.9 bits (80), Expect = 3.4, Method: Composition-based stats.
Identities = 15/87 (17%), Positives = 33/87 (37%), Gaps = 5/87 (5%)
Query: 44 ISEVCMSVDLRVATVYIS--LPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRF 101
+++V A VY+ + + + ++ L + ++ + R P F
Sbjct: 36 VTDVECKKGRYDAFVYLDKMMFDEREQEYILGHLKRVCRHLQNHCMAAEGWYRC-PNFHF 94
Query: 102 RYDTSLQSYWKLNALMCLPKIPVALEK 128
++D L+ ++ L KI L K
Sbjct: 95 KFDDRLEYQNHMDKLF--DKISKDLNK 119
>gi|319786463|ref|YP_004145938.1| excinuclease ABC subunit B [Pseudoxanthomonas suwonensis 11-1]
gi|317464975|gb|ADV26707.1| excinuclease ABC, B subunit [Pseudoxanthomonas suwonensis 11-1]
Length = 675
Score = 34.9 bits (80), Expect = 3.5, Method: Composition-based stats.
Identities = 23/97 (23%), Positives = 43/97 (44%), Gaps = 18/97 (18%)
Query: 12 ALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVAT--VYISL-----PL 64
R+ E L + ++ + R + DV ++ V + DLR+ V + + L
Sbjct: 455 TKRMAEN----LTDYLAEHDIKVRYLHSDVDTVERVEIIRDLRLGKFDVLVGINLLREGL 510
Query: 65 DVSPDRVISALNCNI-KFIRGR------IGRSLRNLR 94
D+ +++ L+ + F+R IGR+ RNLR
Sbjct: 511 DMPEVSLVAILDADKEGFLRSSGSLIQTIGRAARNLR 547
>gi|167538375|ref|XP_001750852.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163770673|gb|EDQ84356.1| predicted protein [Monosiga brevicollis MX1]
Length = 2437
Score = 34.9 bits (80), Expect = 3.7, Method: Composition-based stats.
Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 10/68 (14%)
Query: 33 QDRLISRDVISISEV------CMSVDLRVATVYISL----PLDVSPDRVISALNCNIKFI 82
+D V+SI EV + LR + +S+ P +I AL+ +
Sbjct: 1995 RDDTTGSQVVSIKEVCAGGAAERAGTLRAGDILVSVNGQALAGKKPREIIDALSSASGLV 2054
Query: 83 RGRIGRSL 90
R R+ R +
Sbjct: 2055 RMRLVRRV 2062
>gi|283955582|ref|ZP_06373076.1| ribosome-binding factor A [Campylobacter jejuni subsp. jejuni 1336]
gi|283792925|gb|EFC31700.1| ribosome-binding factor A [Campylobacter jejuni subsp. jejuni 1336]
Length = 120
Score = 34.9 bits (80), Expect = 3.8, Method: Composition-based stats.
Identities = 18/115 (15%), Positives = 40/115 (34%), Gaps = 9/115 (7%)
Query: 13 LRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYIS--LPLDVSPDR 70
LR ++ + + N D + + + +V A VY+ ++
Sbjct: 9 LRTESILKELIPEALAN--LDDENLKN--LCVVDVECKKGRYDAFVYLDKMFFNVHEQEK 64
Query: 71 VISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVA 125
++S+L + ++ R P F++D L+ ++ L KI
Sbjct: 65 ILSSLKKASRALQNYCMSEQGWYRC-PNFHFKFDDRLEYQNHMDGLF--EKIKKD 116
>gi|325275797|ref|ZP_08141666.1| excinuclease ABC subunit B [Pseudomonas sp. TJI-51]
gi|324099068|gb|EGB97045.1| excinuclease ABC subunit B [Pseudomonas sp. TJI-51]
Length = 671
Score = 34.9 bits (80), Expect = 4.0, Method: Composition-based stats.
Identities = 22/96 (22%), Positives = 44/96 (45%), Gaps = 18/96 (18%)
Query: 12 ALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVAT--VYISL-----PL 64
R+ E L + +++ + R + D+ ++ V + DLR+ T V + + L
Sbjct: 453 TKRMAE----DLSDYLADHDVRVRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGL 508
Query: 65 DVSPDRVISALNCNI-KFIRGR------IGRSLRNL 93
D+ +++ L+ + F+R IGR+ RNL
Sbjct: 509 DMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNL 544
>gi|167032515|ref|YP_001667746.1| excinuclease ABC subunit B [Pseudomonas putida GB-1]
gi|166859003|gb|ABY97410.1| excinuclease ABC, B subunit [Pseudomonas putida GB-1]
Length = 671
Score = 34.9 bits (80), Expect = 4.1, Method: Composition-based stats.
Identities = 22/96 (22%), Positives = 44/96 (45%), Gaps = 18/96 (18%)
Query: 12 ALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVAT--VYISL-----PL 64
R+ E L + +++ + R + D+ ++ V + DLR+ T V + + L
Sbjct: 453 TKRMAE----DLSDYLADHDVRVRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGL 508
Query: 65 DVSPDRVISALNCNI-KFIRGR------IGRSLRNL 93
D+ +++ L+ + F+R IGR+ RNL
Sbjct: 509 DMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNL 544
>gi|26988700|ref|NP_744125.1| excinuclease ABC subunit B [Pseudomonas putida KT2440]
gi|81840710|sp|Q88LF9|UVRB_PSEPK RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
Full=Excinuclease ABC subunit B
gi|24983488|gb|AAN67589.1|AE016388_9 excinuclease ABC, B subunit [Pseudomonas putida KT2440]
gi|313499918|gb|ADR61284.1| UvrB [Pseudomonas putida BIRD-1]
Length = 671
Score = 34.5 bits (79), Expect = 4.2, Method: Composition-based stats.
Identities = 22/96 (22%), Positives = 44/96 (45%), Gaps = 18/96 (18%)
Query: 12 ALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVAT--VYISL-----PL 64
R+ E L + +++ + R + D+ ++ V + DLR+ T V + + L
Sbjct: 453 TKRMAE----DLSDYLADHDVRVRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGL 508
Query: 65 DVSPDRVISALNCNI-KFIRGR------IGRSLRNL 93
D+ +++ L+ + F+R IGR+ RNL
Sbjct: 509 DMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNL 544
>gi|148548992|ref|YP_001269094.1| excinuclease ABC subunit B [Pseudomonas putida F1]
gi|148513050|gb|ABQ79910.1| Excinuclease ABC subunit B [Pseudomonas putida F1]
Length = 671
Score = 34.5 bits (79), Expect = 4.2, Method: Composition-based stats.
Identities = 22/96 (22%), Positives = 44/96 (45%), Gaps = 18/96 (18%)
Query: 12 ALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVAT--VYISL-----PL 64
R+ E L + +++ + R + D+ ++ V + DLR+ T V + + L
Sbjct: 453 TKRMAE----DLSDYLADHDVRVRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGL 508
Query: 65 DVSPDRVISALNCNI-KFIRGR------IGRSLRNL 93
D+ +++ L+ + F+R IGR+ RNL
Sbjct: 509 DMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNL 544
>gi|330956609|gb|EGH56869.1| ribosome-binding factor A [Pseudomonas syringae Cit 7]
Length = 40
Score = 34.5 bits (79), Expect = 4.2, Method: Composition-based stats.
Identities = 7/27 (25%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 10 RRALRVGEEVRSALMWVILNNEFQDRL 36
R R+G++++ L +I E +D
Sbjct: 5 SRTQRIGDQMQRELAQLI-RREIKDPR 30
>gi|170720725|ref|YP_001748413.1| excinuclease ABC subunit B [Pseudomonas putida W619]
gi|169758728|gb|ACA72044.1| excinuclease ABC, B subunit [Pseudomonas putida W619]
Length = 671
Score = 34.5 bits (79), Expect = 4.4, Method: Composition-based stats.
Identities = 22/96 (22%), Positives = 44/96 (45%), Gaps = 18/96 (18%)
Query: 12 ALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVAT--VYISL-----PL 64
R+ E L + +++ + R + D+ ++ V + DLR+ T V + + L
Sbjct: 453 TKRMAE----DLSDYLADHDVRVRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGL 508
Query: 65 DVSPDRVISALNCNI-KFIRGR------IGRSLRNL 93
D+ +++ L+ + F+R IGR+ RNL
Sbjct: 509 DMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNL 544
>gi|260889848|ref|ZP_05901111.1| ribosome-binding factor A [Leptotrichia hofstadii F0254]
gi|260860454|gb|EEX74954.1| ribosome-binding factor A [Leptotrichia hofstadii F0254]
Length = 97
Score = 34.5 bits (79), Expect = 4.6, Method: Composition-based stats.
Identities = 14/68 (20%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
Query: 21 SALMWVI---LNNEFQDRLISRDVISISEVCMSVDLRVATVYISLP---LDVSPDRVISA 74
+ +I L E ++ I ++++SI +V ++ D R + S+ +++ +R+
Sbjct: 11 KEISRIIGMTLLTEIKNDKI-KNLVSIHKVELTKDGRYLDLTFSILDLKDNINKERIAED 69
Query: 75 LNCNIKFI 82
LN F+
Sbjct: 70 LNKLKGFL 77
>gi|295656079|gb|ADG26596.1| glycosyltransferase [Leishmania donovani]
Length = 434
Score = 34.5 bits (79), Expect = 5.0, Method: Composition-based stats.
Identities = 20/96 (20%), Positives = 33/96 (34%), Gaps = 28/96 (29%)
Query: 15 VGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDL-------RVATVYISLPLDVS 67
V E +R AL + I + I+ ++V + DL A +
Sbjct: 153 VNEGLRHALQFSIEQ-------VPWVFITNADVRFAPDLIPEFVSQAHAKT-------RN 198
Query: 68 PDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRY 103
++ L+ + R LR VP+ RF Y
Sbjct: 199 QREILRMLDE-------EVAAEARTLRNVPDQRFAY 227
>gi|295688661|ref|YP_003592354.1| TPR repeat-containing protein [Caulobacter segnis ATCC 21756]
gi|295430564|gb|ADG09736.1| TPR repeat-containing protein [Caulobacter segnis ATCC 21756]
Length = 676
Score = 34.5 bits (79), Expect = 5.2, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 48 CMSVDLRVATVYISLPLDVSPDR-VISALNCNIKFIRGRIGRSLRNLRYVP 97
S DL VY+S+ L++ D + A++ R + R +R VP
Sbjct: 612 RPSPDLANLDVYMSVGLELDQDEREMQAVDDYEGLYRAALARR-HKVRSVP 661
>gi|222616401|gb|EEE52533.1| hypothetical protein OsJ_34756 [Oryza sativa Japonica Group]
Length = 567
Score = 34.5 bits (79), Expect = 5.2, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 9/57 (15%)
Query: 2 KNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATV 58
K P RR LR + V +L++ + ISEV + DL+ AT
Sbjct: 426 KRLTPTPKRRQLRAADMVARTAARCLLHDWVKRPA-------ISEVVV--DLKAATA 473
>gi|117164743|emb|CAJ88291.1| conserved hypothetical protein [Streptomyces ambofaciens ATCC
23877]
Length = 361
Score = 34.5 bits (79), Expect = 5.3, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 64 LDVSPDRVISALNCNI-KFIRGRIGRSLRNLRYVPELRFRYDT 105
L +R +L F+R + + R R V E+RF YD
Sbjct: 139 LGAGFERYAESLRRASPGFLRQTLAKERRLARQVGEVRFVYDE 181
>gi|77552405|gb|ABA95202.1| Protein kinase domain containing protein, expressed [Oryza sativa
Japonica Group]
Length = 580
Score = 34.5 bits (79), Expect = 5.5, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 9/57 (15%)
Query: 2 KNKNPKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATV 58
K P RR LR + V +L++ + ISEV + DL+ AT
Sbjct: 439 KRLTPTPKRRQLRAADMVARTAARCLLHDWVKRPA-------ISEVVV--DLKAATA 486
>gi|56478261|ref|YP_159850.1| hypothetical protein ebA4964 [Aromatoleum aromaticum EbN1]
gi|56314304|emb|CAI08949.1| conserved hypothetical protein [Aromatoleum aromaticum EbN1]
Length = 421
Score = 34.2 bits (78), Expect = 5.5, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
Query: 2 KNKNPKNSRR-ALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLR 54
K K+ N +R R +++R A+ I + +D L + + ISI S DL
Sbjct: 12 KKKSAVNRQRFMRRFKQQIRRAVSDAIQDRSIRD-LDNGEQISIP----SKDLS 60
>gi|89900959|ref|YP_523430.1| excinuclease ABC subunit B [Rhodoferax ferrireducens T118]
gi|89345696|gb|ABD69899.1| excinuclease ABC, B subunit [Rhodoferax ferrireducens T118]
Length = 710
Score = 34.2 bits (78), Expect = 6.0, Method: Composition-based stats.
Identities = 23/96 (23%), Positives = 44/96 (45%), Gaps = 18/96 (18%)
Query: 12 ALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVAT--VYISL-----PL 64
R+ E+ L + +N + R + D+ ++ V + DLR+ T V + + L
Sbjct: 480 TKRMAEQ----LTDYLSDNGVKVRYLHSDIDTVERVEILRDLRLGTFDVLVGINLLREGL 535
Query: 65 DVSPDRVISALNCNI-KFIRGR------IGRSLRNL 93
D+ +++ L+ + F+R IGR+ RNL
Sbjct: 536 DIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNL 571
>gi|257093910|ref|YP_003167551.1| excinuclease ABC subunit B [Candidatus Accumulibacter phosphatis
clade IIA str. UW-1]
gi|257046434|gb|ACV35622.1| excinuclease ABC, B subunit [Candidatus Accumulibacter phosphatis
clade IIA str. UW-1]
Length = 692
Score = 34.2 bits (78), Expect = 6.1, Method: Composition-based stats.
Identities = 21/99 (21%), Positives = 42/99 (42%), Gaps = 18/99 (18%)
Query: 12 ALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVAT--VYISL-----PL 64
R+ E L + +E + R + D+ ++ V + DLR+ V + + L
Sbjct: 470 TKRMAE----DLTDYLGEHEVRVRYLHSDIDTVERVEIIRDLRLGKFDVLVGINLLREGL 525
Query: 65 DVSPDRVISALNCNI-KFIRGR------IGRSLRNLRYV 96
D+ +++ L+ + F+R IGR+ R+L
Sbjct: 526 DIPEVSLVAILDADKEGFLRSERSLIQTIGRAARHLHGT 564
>gi|158291074|ref|XP_312585.4| AGAP002371-PA [Anopheles gambiae str. PEST]
gi|157018200|gb|EAA07489.4| AGAP002371-PA [Anopheles gambiae str. PEST]
Length = 1397
Score = 34.2 bits (78), Expect = 6.2, Method: Composition-based stats.
Identities = 15/90 (16%), Positives = 33/90 (36%), Gaps = 17/90 (18%)
Query: 51 VDLRVATVYISLPLDVSPDRVISA------------LNCNIKFIRGRIGRSLRNLRYVPE 98
DL A + D S +++ L N +R ++ + L+ +
Sbjct: 799 RDLEHADFHRDHCEDDSESELLNGGDDGDDLELVGMLKRNALLLRNKLAAVIEELQLLCS 858
Query: 99 LRFRYDTSLQSYWKLNALMCLPKIPVALEK 128
D SL+ + +++ L L ++ L +
Sbjct: 859 -----DESLEEFDEIDRLGALTRVREILHQ 883
>gi|50954617|ref|YP_061905.1| chromosome partitioning protein [Leifsonia xyli subsp. xyli str.
CTCB07]
gi|50951099|gb|AAT88800.1| chromosome partitioning protein [Leifsonia xyli subsp. xyli str.
CTCB07]
Length = 380
Score = 34.2 bits (78), Expect = 6.2, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Query: 17 EEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISL 62
EE+R AL V+ + E + + D+ I V ++ D ATV + L
Sbjct: 6 EEIRRALGGVL-DPEIRKPMTELDM--IGGVEVAPD-GHATVEVKL 47
>gi|66825233|ref|XP_645971.1| hypothetical protein DDB_G0270868 [Dictyostelium discoideum AX4]
gi|60474847|gb|EAL72784.1| hypothetical protein DDB_G0270868 [Dictyostelium discoideum AX4]
Length = 877
Score = 34.2 bits (78), Expect = 6.2, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 53 LRVATVYISLPLDVSPDRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTS 106
L+ Y SL +V+ + L +R IG+ +++ +YVP++ F D S
Sbjct: 671 LKRRKKYRSLFFEVTDRDISHRLVKIKSRVRWIIGKKVKS-KYVPDILFVKDQS 723
>gi|134095424|ref|YP_001100499.1| excinuclease ABC subunit B [Herminiimonas arsenicoxydans]
gi|133739327|emb|CAL62377.1| UvrABC system protein B (Protein uvrB) (Excinuclease ABC subunit B)
[Herminiimonas arsenicoxydans]
Length = 694
Score = 34.2 bits (78), Expect = 6.5, Method: Composition-based stats.
Identities = 23/96 (23%), Positives = 44/96 (45%), Gaps = 18/96 (18%)
Query: 12 ALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVAT--VYISL-----PL 64
R+ E+ L + +N + R + D+ ++ V + DLR+ T V + + L
Sbjct: 473 TKRMSEQ----LTEFLSDNGIKVRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGL 528
Query: 65 DVSPDRVISALNCNI-KFIRGR------IGRSLRNL 93
D+ +++ L+ + F+R IGR+ RNL
Sbjct: 529 DLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNL 564
>gi|254168140|ref|ZP_04874987.1| glycosyl transferase, group 1 family protein [Aciduliprofundum
boonei T469]
gi|197622906|gb|EDY35474.1| glycosyl transferase, group 1 family protein [Aciduliprofundum
boonei T469]
Length = 393
Score = 34.2 bits (78), Expect = 6.9, Method: Composition-based stats.
Identities = 25/106 (23%), Positives = 44/106 (41%), Gaps = 21/106 (19%)
Query: 28 LNNEFQDRLISRDVISISEV----CMSVDLRVATVYISLPLDVSPDRVI-SALNCNIKFI 82
L NE + R + + I E+ ++ + A +++ LD V+ +L C + FI
Sbjct: 266 LRNEVKRRNLENYINFIGEIPLDEDVARYIASADIFVLPTLDEGNPTVMFESLGCGVPFI 325
Query: 83 RGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALMCLPKIPVALEK 128
R+ +PE+ TS + L+ PK P LE+
Sbjct: 326 GSRVAG-------IPEII----TSEEYG-----LLTEPKNPKDLEE 355
>gi|149635292|ref|XP_001510473.1| PREDICTED: similar to KIAA0556 protein [Ornithorhynchus anatinus]
Length = 1525
Score = 33.8 bits (77), Expect = 7.3, Method: Composition-based stats.
Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 12/73 (16%)
Query: 3 NKNPKNSRRALRV-GEEVRSAL---MWVILNNEFQDRLISRDVISISEVCMSVDLRVATV 58
++ +R R GEE++ A+ M ++ N + + ++EV DL A V
Sbjct: 370 KESESECQRQQRAKGEEIKDAIYVTMEILSNWG------NEVWVGLTEVEFF-DLNNAKV 422
Query: 59 YISLPLDVSPDRV 71
++S P DV
Sbjct: 423 FVS-PHDVDIRNT 434
>gi|104780800|ref|YP_607298.1| excinuclease ABC subunit B [Pseudomonas entomophila L48]
gi|95109787|emb|CAK14492.1| exonuclease ABC subunit B (ATP-dependent DNA excision repair enzyme
UvrAC) [Pseudomonas entomophila L48]
Length = 671
Score = 33.8 bits (77), Expect = 7.9, Method: Composition-based stats.
Identities = 22/96 (22%), Positives = 44/96 (45%), Gaps = 18/96 (18%)
Query: 12 ALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVAT--VYISL-----PL 64
R+ E L + +++ + R + D+ ++ V + DLR+ T V + + L
Sbjct: 453 TKRMAE----DLTDYLADHDVRVRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGL 508
Query: 65 DVSPDRVISALNCNI-KFIRGR------IGRSLRNL 93
D+ +++ L+ + F+R IGR+ RNL
Sbjct: 509 DMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNL 544
>gi|124267474|ref|YP_001021478.1| excinuclease ABC subunit B [Methylibium petroleiphilum PM1]
gi|124260249|gb|ABM95243.1| Excinuclease ABC subunit B [Methylibium petroleiphilum PM1]
Length = 710
Score = 33.8 bits (77), Expect = 8.3, Method: Composition-based stats.
Identities = 23/96 (23%), Positives = 43/96 (44%), Gaps = 18/96 (18%)
Query: 12 ALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVA--TVYISL-----PL 64
R+ E+ L + +N + R + DV ++ V + DLR+ V + + L
Sbjct: 480 TKRMAEQ----LTDYLADNGVKVRYLHSDVDTVERVEILRDLRLGSFDVLVGINLLREGL 535
Query: 65 DVSPDRVISALNCNI-KFIRGR------IGRSLRNL 93
D+ +++ L+ + F+R IGR+ RNL
Sbjct: 536 DIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNL 571
>gi|167518846|ref|XP_001743763.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163777725|gb|EDQ91341.1| predicted protein [Monosiga brevicollis MX1]
Length = 488
Score = 33.8 bits (77), Expect = 8.6, Method: Composition-based stats.
Identities = 22/106 (20%), Positives = 42/106 (39%), Gaps = 6/106 (5%)
Query: 14 RVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYI--SLPLDVSPDRV 71
R E + A++ +I + + + I +S A V I + + V
Sbjct: 378 RSAETMYQAVLTLIFRDRII-PGLVGTSLEIMPPEISR--SRAKVVIPWQVSNHAEEEAV 434
Query: 72 ISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNALM 117
+ L K +R I + L NL+ P + FR + + +++AL
Sbjct: 435 AAELKRAEKRLRRHIAQGL-NLKRTPAIVFRRTAARERQAEMDALF 479
>gi|21227602|ref|NP_633524.1| Xaa-Pro aminopeptidase [Methanosarcina mazei Go1]
gi|20905988|gb|AAM31196.1| Xaa-Pro aminopeptidase [Methanosarcina mazei Go1]
Length = 393
Score = 33.8 bits (77), Expect = 8.6, Method: Composition-based stats.
Identities = 16/93 (17%), Positives = 31/93 (33%), Gaps = 20/93 (21%)
Query: 49 MSVDLRVATVY-ISLPLDVSPDRVISALNCNIK----FI------RGRIGRSLRNLRYVP 97
M+ D+ A +Y ++ L L FI R I + N++
Sbjct: 22 MTGDIHNADIYYVTRFLASDE---FMYLQTGAGKEILFISEMERGRAEIESRISNIKTTQ 78
Query: 98 ELRFRY------DTSLQSYWKLNALMCLPKIPV 124
E +R D S+ ++ L+ ++
Sbjct: 79 EFGYREKIKEKKDASIAYAACISELLLGEEVKR 111
>gi|329904108|ref|ZP_08273674.1| Excinuclease ABC subunit B [Oxalobacteraceae bacterium IMCC9480]
gi|327548130|gb|EGF32846.1| Excinuclease ABC subunit B [Oxalobacteraceae bacterium IMCC9480]
Length = 697
Score = 33.8 bits (77), Expect = 8.7, Method: Composition-based stats.
Identities = 23/96 (23%), Positives = 44/96 (45%), Gaps = 18/96 (18%)
Query: 12 ALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVAT--VYISL-----PL 64
R+ E+ L + +N + R + D+ ++ V + DLR+ T V + + L
Sbjct: 473 TKRMSEQ----LTEFLSDNGVKVRYLHSDIDTVERVEILRDLRLGTFDVLVGINLLREGL 528
Query: 65 DVSPDRVISALNCNI-KFIRGR------IGRSLRNL 93
D+ +++ L+ + F+R IGR+ RNL
Sbjct: 529 DLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNL 564
>gi|34498607|ref|NP_902822.1| excinuclease ABC subunit B [Chromobacterium violaceum ATCC 12472]
gi|81834593|sp|Q7NTA7|UVRB_CHRVO RecName: Full=UvrABC system protein B; Short=Protein uvrB; AltName:
Full=Excinuclease ABC subunit B
gi|34104461|gb|AAQ60819.1| excinuclease ABC subunit B [Chromobacterium violaceum ATCC 12472]
Length = 670
Score = 33.8 bits (77), Expect = 8.8, Method: Composition-based stats.
Identities = 23/97 (23%), Positives = 42/97 (43%), Gaps = 18/97 (18%)
Query: 12 ALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVA--TVYISL-----PL 64
R+ E+ L + + R + D+ ++ V + DLR+ V I + L
Sbjct: 459 TKRMAEQ----LADYYTEHGVKVRYLHSDIDTVERVEIIRDLRLGMFDVLIGINLLREGL 514
Query: 65 DVSPDRVISALNCNI-KFIRGR------IGRSLRNLR 94
D+ +++ L+ + F+R IGR+ RNLR
Sbjct: 515 DIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLR 551
>gi|218296597|ref|ZP_03497315.1| ribosome-binding factor A [Thermus aquaticus Y51MC23]
gi|218242910|gb|EED09443.1| ribosome-binding factor A [Thermus aquaticus Y51MC23]
Length = 94
Score = 33.8 bits (77), Expect = 9.0, Method: Composition-based stats.
Identities = 12/66 (18%), Positives = 27/66 (40%), Gaps = 6/66 (9%)
Query: 17 EEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISALN 76
E +R L I +D + ++++ +S D + +VY+ D + + AL
Sbjct: 10 ERLRRILAEEIQ--ALEDPRL--FLLTVEAARLSPDGGLLSVYVEAFRD--QEGALEALA 63
Query: 77 CNIKFI 82
+ +
Sbjct: 64 HAERRL 69
>gi|189207030|ref|XP_001939849.1| kinase isozyme 4, mitochondrial precursor [Pyrenophora
tritici-repentis Pt-1C-BFP]
gi|187975942|gb|EDU42568.1| kinase isozyme 4, mitochondrial precursor [Pyrenophora
tritici-repentis Pt-1C-BFP]
Length = 428
Score = 33.4 bits (76), Expect = 9.4, Method: Composition-based stats.
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 7/85 (8%)
Query: 15 VGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLDVSPDRVISA 74
VGE +R+++ VI + +D + + I E + + IS P+ V+
Sbjct: 248 VGELLRNSIQAVIEQRKSKDDNLPPIEVLICETS-----QHVIIRISDQGGGIPNEVLPY 302
Query: 75 LNCNIKFIRGRIGRSLRNLRYVPEL 99
L K R + L+NL VP+L
Sbjct: 303 LWSFSKGPRRE--KRLQNLARVPKL 325
Database: nr
Posted date: May 22, 2011 12:22 AM
Number of letters in database: 999,999,966
Number of sequences in database: 2,987,313
Database: /data/usr2/db/fasta/nr.01
Posted date: May 22, 2011 12:30 AM
Number of letters in database: 999,999,796
Number of sequences in database: 2,903,041
Database: /data/usr2/db/fasta/nr.02
Posted date: May 22, 2011 12:36 AM
Number of letters in database: 999,999,281
Number of sequences in database: 2,904,016
Database: /data/usr2/db/fasta/nr.03
Posted date: May 22, 2011 12:41 AM
Number of letters in database: 999,999,960
Number of sequences in database: 2,935,328
Database: /data/usr2/db/fasta/nr.04
Posted date: May 22, 2011 12:46 AM
Number of letters in database: 842,794,627
Number of sequences in database: 2,394,679
Lambda K H
0.312 0.189 0.584
Lambda K H
0.267 0.0585 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,324,619,063
Number of Sequences: 14124377
Number of extensions: 189004585
Number of successful extensions: 499278
Number of sequences better than 10.0: 2158
Number of HSP's better than 10.0 without gapping: 1958
Number of HSP's successfully gapped in prelim test: 1288
Number of HSP's that attempted gapping in prelim test: 491383
Number of HSP's gapped (non-prelim): 3289
length of query: 128
length of database: 4,842,793,630
effective HSP length: 94
effective length of query: 34
effective length of database: 3,515,102,192
effective search space: 119513474528
effective search space used: 119513474528
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.4 bits)
S2: 77 (33.8 bits)