RPSBLAST alignment of GI: 254780786 and protein with PDBid: 1jos

>1jos_A RBFA, ribosome-binding factor A; RNA binding protein, structure 2 function project, S2F, structural genomics; 1.70A {Haemophilus influenzae} SCOP: d.52.7.1 PDB: 1kkg_A Length = 128
 Score = 81.0 bits (200), Expect = 7e-17
 Identities = 34/114 (29%), Positives = 63/114 (55%), Gaps = 7/114 (6%)

Query: 6   PKNSRRALRVGEEVRSALMWVILNNEFQDRLISRDVISISEVCMSVDLRVATVYISLPLD 65
            +  +R+ RV +E++  +  VIL  E +D  I    +++S+V +S DL  A ++++   D
Sbjct: 2   AREFKRSDRVAQEIQKEIA-VILQREVKDPRIGM--VTVSDVEVSSDLSYAKIFVTFLFD 58

Query: 66  VSP---DRVISALNCNIKFIRGRIGRSLRNLRYVPELRFRYDTSLQSYWKLNAL 116
                 ++ +  L     +IR  +G+++R LR VPE+RF YD SL    +++ L
Sbjct: 59  HDEMAIEQGMKGLEKASPYIRSLLGKAMR-LRIVPEIRFIYDQSLVEGMRMSNL 111