HHsearch alignment for GI: 254780787 and conserved domain: COG0378
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription].
Probab=96.68 E-value=0.00061 Score=44.91 Aligned_cols=150 Identities=19% Similarity=0.160 Sum_probs=83.2
Q ss_pred CCCC-CEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEE----------------------------CCCEEEE-----
Q ss_conf 2553-03898623685044677788642221001231000----------------------------1214999-----
Q gi|254780787|r 380 DIRP-PVVTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQ----------------------------HIGAYQV----- 425 (884)
Q Consensus 380 ~~R~-pvv~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq----------------------------~iga~~~----- 425 (884)
T Consensus 9 ~~~~~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~ 88 (202)
T COG0378 9 KNRPMLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIE 88 (202)
T ss_pred HCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCEEEEECEEECHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHH
T ss_conf 25864899961799867899999999999752776899640400655999973779806874038765886788999999
Q ss_pred ----ECCCCEEEEEECCCHHHHHHHHHHH-HHCCC-CEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCC
Q ss_conf ----5178438888516615789998666-42068-05999983667402357778989970994156123312443320
Q gi|254780787|r 426 ----AYQGKNITFLDTPGHAAFYEMRARG-ARVTD-IAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLGADP 499 (884)
Q Consensus 426 ----~~~~~~~~~iDtPGh~~f~~~r~rg-~~~~d-~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~~ 499 (884)
T Consensus 89 ~l~~~~~~~Dll~iEs~G-----NL~~~~sp~L~d~~~v~VidvteGe~~P~K~gP~---i~~-aDllVInK~DLa~~v~ 159 (202)
T COG0378 89 ELVLDFPDLDLLFIESVG-----NLVCPFSPDLGDHLRVVVIDVTEGEDIPRKGGPG---IFK-ADLLVINKTDLAPYVG 159 (202)
T ss_pred HHHHCCCCCCEEEEECCC-----CEECCCCCCHHHCEEEEEEECCCCCCCCCCCCCC---EEE-EEEEEEEHHHHHHHHC
T ss_conf 986317767789992376-----4324468041304699999878888876557996---467-4189985677387728
Q ss_pred CHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCHHC
Q ss_conf 0022100001320001234740363110024774112210000
Q gi|254780787|r 500 QKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLDKLLDAILL 542 (884)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (884)
T Consensus 160 ----~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~ 198 (202)
T COG0378 160 ----ADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEP 198 (202)
T ss_pred ----CCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf ----669999999998499998899847878689999999876