HHsearch alignment for GI: 254780787 and conserved domain: COG1084

Probab=98.63  E-value=2.9e-07  Score=67.64  Aligned_cols=153  Identities=24%  Similarity=0.293  Sum_probs=93.2

Q ss_pred             CCCCCCEEEEEECCCCCHHHHHHHHHHH--HHHHCCCCCCEECCCEEEEECCCCEEEEEECCCHHH--HH--HHHHH---
Q ss_conf             1255303898623685044677788642--221001231000121499951784388885166157--89--99866---
Q gi|254780787|r  379 LDIRPPVVTIMGHVDHGKTSLLDAIRKA--DVAKGEIGGITQHIGAYQVAYQGKNITFLDTPGHAA--FY--EMRAR---  449 (884)
Q Consensus       379 ~~~R~pvv~v~ghvd~GKt~lld~~r~~--~~~~~e~ggitq~iga~~~~~~~~~~~~iDtPGh~~--f~--~~r~r---  449 (884)
T Consensus       164 Idp~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe--~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi  241 (346)
T COG1084         164 IDPDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFE--RGYLRIQVIDTPGLLDRPLEERNEIERQAI  241 (346)
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEE--CCCCEEEEECCCCCCCCCHHHHCHHHHHHH
T ss_conf             799997389856998758999988754897667888533654676550--487058984288645788577368999999


Q ss_pred             --HHHCCCCEEEEEECCCCCCHHHHHHHHHH----HHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEE
Q ss_conf             --64206805999983667402357778989----970994156123312443320002210000132000123474036
Q gi|254780787|r  450 --GARVTDIAVLVLAADEEIMPQAIESINHA----KAADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDV  523 (884)
Q Consensus       450 --g~~~~d~~ilvv~~~~g~~~qt~e~~~~~----~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  523 (884)
T Consensus       242 ~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v~V~nK~D~~~~e~~~~~~~~~~------~~~-~~~~~  314 (346)
T COG1084         242 LALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFKAPIVVVINKIDIADEEKLEEIEASVL------EEG-GEEPL  314 (346)
T ss_pred             HHHHHHCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHH------HHC-CCCCC
T ss_conf             99997428589997685002899999999999999853887699974101246667899999987------632-65543


Q ss_pred             EEEECCCCCCCCCCCCH
Q ss_conf             31100247741122100
Q gi|254780787|r  524 EISAKNNLNLDKLLDAI  540 (884)
Q Consensus       524 ~~~~~~~~~~~~~~~~~  540 (884)
T Consensus       315 ~~~~~~~~~~d~~~~~v  331 (346)
T COG1084         315 KISATKGCGLDKLREEV  331 (346)
T ss_pred             CEEEEEHHHHHHHHHHH
T ss_conf             13543000178899999