HHsearch alignment for GI: 254780787 and conserved domain: COG1100
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only].
Probab=98.94 E-value=9.4e-09 Score=77.85 Aligned_cols=160 Identities=20% Similarity=0.220 Sum_probs=108.2
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEEEEECC--CCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 38986236850446777886422210012310001214999517--8438888516615789998666420680599998
Q gi|254780787|r 385 VVTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAYQVAYQ--GKNITFLDTPGHAAFYEMRARGARVTDIAVLVLA 462 (884)
Q Consensus 385 vv~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~~~~~~--~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~ 462 (884)
T Consensus 7 kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~d 86 (219)
T COG1100 7 KIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIVYD 86 (219)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEECCCCCEEECCCCCEEEEEEECCCHHHHHHHHHHCCCCCCEEEEEEE
T ss_conf 99999999998899999996476765567614540432036226660026767679869999988750438978999997
Q ss_pred CCC--CCCHHHHHHHHHHHHC---CCCEEEECCCCCCCCCCCCHHHH-------H-H-HCCCCCCCCCCCCCEEEEEEEC
Q ss_conf 366--7402357778989970---99415612331244332000221-------0-0-0013200012347403631100
Q gi|254780787|r 463 ADE--EIMPQAIESINHAKAA---DVSIIVAINKIDKLGADPQKVRM-------S-L-LKHDVFVESMGGDILDVEISAK 528 (884)
Q Consensus 463 ~~~--g~~~qt~e~~~~~~~~---~~p~iva~nk~d~~~~~~~~~~~-------~-~-~~~~~~~~~~~~~~~~~~~~~~ 528 (884)
T Consensus 87 ~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 166 (219)
T COG1100 87 STLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSAK 166 (219)
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHEEEEE
T ss_conf 62056578899999999987466886799969761055430136788775324530002223444233200044324210
Q ss_pred --CCCCCCCCCCCHHCCC
Q ss_conf --2477411221000023
Q gi|254780787|r 529 --NNLNLDKLLDAILLQA 544 (884)
Q Consensus 529 --~~~~~~~~~~~~~~~~ 544 (884)
T Consensus 167 ~~~~~~v~~~~~~~~~~~ 184 (219)
T COG1100 167 SLTGPNVNELFKELLRKL 184 (219)
T ss_pred CCCCCCHHHHHHHHHHHH
T ss_conf 167878789999999999