HHsearch alignment for GI: 254780787 and conserved domain: COG1100

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only].
Probab=98.94  E-value=9.4e-09  Score=77.85  Aligned_cols=160  Identities=20%  Similarity=0.220  Sum_probs=108.2

Q ss_pred             EEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEEEEECC--CCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf             38986236850446777886422210012310001214999517--8438888516615789998666420680599998
Q gi|254780787|r  385 VVTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAYQVAYQ--GKNITFLDTPGHAAFYEMRARGARVTDIAVLVLA  462 (884)
Q Consensus       385 vv~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~~~~~~--~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~  462 (884)
T Consensus         7 kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~d   86 (219)
T COG1100           7 KIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIVYD   86 (219)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEECCCCCEEECCCCCEEEEEEECCCHHHHHHHHHHCCCCCCEEEEEEE
T ss_conf             99999999998899999996476765567614540432036226660026767679869999988750438978999997


Q ss_pred             CCC--CCCHHHHHHHHHHHHC---CCCEEEECCCCCCCCCCCCHHHH-------H-H-HCCCCCCCCCCCCCEEEEEEEC
Q ss_conf             366--7402357778989970---99415612331244332000221-------0-0-0013200012347403631100
Q gi|254780787|r  463 ADE--EIMPQAIESINHAKAA---DVSIIVAINKIDKLGADPQKVRM-------S-L-LKHDVFVESMGGDILDVEISAK  528 (884)
Q Consensus       463 ~~~--g~~~qt~e~~~~~~~~---~~p~iva~nk~d~~~~~~~~~~~-------~-~-~~~~~~~~~~~~~~~~~~~~~~  528 (884)
T Consensus        87 ~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  166 (219)
T COG1100          87 STLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSAK  166 (219)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHEEEEE
T ss_conf             62056578899999999987466886799969761055430136788775324530002223444233200044324210


Q ss_pred             --CCCCCCCCCCCHHCCC
Q ss_conf             --2477411221000023
Q gi|254780787|r  529 --NNLNLDKLLDAILLQA  544 (884)
Q Consensus       529 --~~~~~~~~~~~~~~~~  544 (884)
T Consensus       167 ~~~~~~v~~~~~~~~~~~  184 (219)
T COG1100         167 SLTGPNVNELFKELLRKL  184 (219)
T ss_pred             CCCCCCHHHHHHHHHHHH
T ss_conf             167878789999999999