HHsearch alignment for GI: 254780787 and conserved domain: COG5256

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis].
Probab=99.98  E-value=6e-32  Score=236.52  Aligned_cols=228  Identities=25%  Similarity=0.317  Sum_probs=172.1

Q ss_pred             EEEEECCCCCHHHHHHHHH------------HHHHHHCC-------------------CCCCEECCCEEEEECCCCEEEE
Q ss_conf             8986236850446777886------------42221001-------------------2310001214999517843888
Q gi|254780787|r  386 VTIMGHVDHGKTSLLDAIR------------KADVAKGE-------------------IGGITQHIGAYQVAYQGKNITF  434 (884)
Q Consensus       386 v~v~ghvd~GKt~lld~~r------------~~~~~~~e-------------------~ggitq~iga~~~~~~~~~~~~  434 (884)
T Consensus        10 l~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k~~~tI   89 (428)
T COG5256          10 LVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDKYNFTI   89 (428)
T ss_pred             EEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHCCEEEEEEEEEEECCCCEEEE
T ss_conf             99983787870344556577737979899999999998619771689998538866786666899777886437705899


Q ss_pred             EECCCHHHHHHHHHHHHHCCCCEEEEEECCCC-------CCHHHHHHHHHHHHCCCC-EEEECCCCCCCCCCCCHHHHHH
Q ss_conf             85166157899986664206805999983667-------402357778989970994-1561233124433200022100
Q gi|254780787|r  435 LDTPGHAAFYEMRARGARVTDIAVLVLAADEE-------IMPQAIESINHAKAADVS-IIVAINKIDKLGADPQKVRMSL  506 (884)
Q Consensus       435 iDtPGh~~f~~~r~rg~~~~d~~ilvv~~~~g-------~~~qt~e~~~~~~~~~~p-~iva~nk~d~~~~~~~~~~~~~  506 (884)
T Consensus        90 iDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~-wde~rf~ei  168 (428)
T COG5256          90 IDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVS-WDEERFEEI  168 (428)
T ss_pred             EECCCHHHHHHHHHCCHHHCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCC-CCHHHHHHH
T ss_conf             6078467789876313313367999998889831014365875167899998569756999997156666-279999999


Q ss_pred             HCCCC-CCCCCCC---CCEEEEEEECCCCCCCCCC------------CCHHCCCCCCCCCCCCCCCCCCEEEEEEEECCC
Q ss_conf             00132-0001234---7403631100247741122------------100002333342000348666416777886377
Q gi|254780787|r  507 LKHDV-FVESMGG---DILDVEISAKNNLNLDKLL------------DAILLQAEMLDLKTSINRKAEGIVVEGKLDRGR  570 (884)
Q Consensus       507 ~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  570 (884)
T Consensus       169 ~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~s~~~pWY~GpTLleaLd-~~~~p--~~~~d~Plr~pI~~v~~i~~~  245 (428)
T COG5256         169 VSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKKSENMPWYKGPTLLEALD-QLEPP--ERPLDKPLRLPIQDVYSISGI  245 (428)
T ss_pred             HHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHH-CCCCC--CCCCCCCEEEEEEEEEEECCC
T ss_conf             999999999719986677079622446776332676786724871898974-55789--877788817680017871688


Q ss_pred             CCCHHHHHHCCHHHCCCCCCCC--CCCCCCEECCCCCCCCCCCCCCCCCC
Q ss_conf             6200000000000000000256--65554200014665322100001222
Q gi|254780787|r  571 GPVVTVLVQKGTLSKGNILVVG--DQWGKIRALFNDRGQGISKAVPSMPI  618 (884)
Q Consensus       571 ~~~~~~~~~~g~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~  618 (884)
T Consensus       246 gtv~vGrVEsG~i~~g~~v~~~p~~~~~evksie~~-~~~~~~a~~GD~i  294 (428)
T COG5256         246 GTVPVGRVESGVIKPGQKVTFMPAGVVGEVKSIEMH-HEEISQAEPGDNV  294 (428)
T ss_pred             CEEEEEEEEEEEECCCCEEEEECCCCEEEEEEEEEC-CCCCCCCCCCCEE
T ss_conf             547887886134516987999648612787645612-6654447898768