HHsearch alignment for GI: 254780787 and conserved domain: COG5256
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis].
Probab=99.98 E-value=6e-32 Score=236.52 Aligned_cols=228 Identities=25% Similarity=0.317 Sum_probs=172.1
Q ss_pred EEEEECCCCCHHHHHHHHH------------HHHHHHCC-------------------CCCCEECCCEEEEECCCCEEEE
Q ss_conf 8986236850446777886------------42221001-------------------2310001214999517843888
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIR------------KADVAKGE-------------------IGGITQHIGAYQVAYQGKNITF 434 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r------------~~~~~~~e-------------------~ggitq~iga~~~~~~~~~~~~ 434 (884)
T Consensus 10 l~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k~~~tI 89 (428)
T COG5256 10 LVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDKYNFTI 89 (428)
T ss_pred EEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHCCEEEEEEEEEEECCCCEEEE
T ss_conf 99983787870344556577737979899999999998619771689998538866786666899777886437705899
Q ss_pred EECCCHHHHHHHHHHHHHCCCCEEEEEECCCC-------CCHHHHHHHHHHHHCCCC-EEEECCCCCCCCCCCCHHHHHH
Q ss_conf 85166157899986664206805999983667-------402357778989970994-1561233124433200022100
Q gi|254780787|r 435 LDTPGHAAFYEMRARGARVTDIAVLVLAADEE-------IMPQAIESINHAKAADVS-IIVAINKIDKLGADPQKVRMSL 506 (884)
Q Consensus 435 iDtPGh~~f~~~r~rg~~~~d~~ilvv~~~~g-------~~~qt~e~~~~~~~~~~p-~iva~nk~d~~~~~~~~~~~~~ 506 (884)
T Consensus 90 iDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~-wde~rf~ei 168 (428)
T COG5256 90 IDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVS-WDEERFEEI 168 (428)
T ss_pred EECCCHHHHHHHHHCCHHHCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCC-CCHHHHHHH
T ss_conf 6078467789876313313367999998889831014365875167899998569756999997156666-279999999
Q ss_pred HCCCC-CCCCCCC---CCEEEEEEECCCCCCCCCC------------CCHHCCCCCCCCCCCCCCCCCCEEEEEEEECCC
Q ss_conf 00132-0001234---7403631100247741122------------100002333342000348666416777886377
Q gi|254780787|r 507 LKHDV-FVESMGG---DILDVEISAKNNLNLDKLL------------DAILLQAEMLDLKTSINRKAEGIVVEGKLDRGR 570 (884)
Q Consensus 507 ~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 570 (884)
T Consensus 169 ~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~s~~~pWY~GpTLleaLd-~~~~p--~~~~d~Plr~pI~~v~~i~~~ 245 (428)
T COG5256 169 VSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKKSENMPWYKGPTLLEALD-QLEPP--ERPLDKPLRLPIQDVYSISGI 245 (428)
T ss_pred HHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHH-CCCCC--CCCCCCCEEEEEEEEEEECCC
T ss_conf 999999999719986677079622446776332676786724871898974-55789--877788817680017871688
Q ss_pred CCCHHHHHHCCHHHCCCCCCCC--CCCCCCEECCCCCCCCCCCCCCCCCC
Q ss_conf 6200000000000000000256--65554200014665322100001222
Q gi|254780787|r 571 GPVVTVLVQKGTLSKGNILVVG--DQWGKIRALFNDRGQGISKAVPSMPI 618 (884)
Q Consensus 571 ~~~~~~~~~~g~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~ 618 (884)
T Consensus 246 gtv~vGrVEsG~i~~g~~v~~~p~~~~~evksie~~-~~~~~~a~~GD~i 294 (428)
T COG5256 246 GTVPVGRVESGVIKPGQKVTFMPAGVVGEVKSIEMH-HEEISQAEPGDNV 294 (428)
T ss_pred CEEEEEEEEEEEECCCCEEEEECCCCEEEEEEEEEC-CCCCCCCCCCCEE
T ss_conf 547887886134516987999648612787645612-6654447898768