HHsearch alignment for GI: 254780787 and conserved domain: PRK05291
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed.
Probab=99.12 E-value=1.1e-09 Score=84.26 Aligned_cols=141 Identities=27% Similarity=0.377 Sum_probs=103.7
Q ss_pred CCCC-CEEEEEECCCCCHHHHHHHHHHHH--HHHCCCCCCEECCCEEEEECCCCEEEEEECCCHHH-------HHHHHHH
Q ss_conf 2553-038986236850446777886422--21001231000121499951784388885166157-------8999866
Q gi|254780787|r 380 DIRP-PVVTIMGHVDHGKTSLLDAIRKAD--VAKGEIGGITQHIGAYQVAYQGKNITFLDTPGHAA-------FYEMRAR 449 (884)
Q Consensus 380 ~~R~-pvv~v~ghvd~GKt~lld~~r~~~--~~~~e~ggitq~iga~~~~~~~~~~~~iDtPGh~~-------f~~~r~r 449 (884)
T Consensus 212 ~l~~G~~v~i~G~PN~GKSSL~N~L~~~drAIVS~ip-GTTRD~ie~~l~l~G~~v~l~DTAGiR~t~d~IE~~GI~ra~ 290 (445)
T PRK05291 212 LLREGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIA-GTTRDVIEEHINLDGIPLRLIDTAGIRETEDEVEKIGIERSR 290 (445)
T ss_pred HHHCCCEEEEECCCCCCHHHHHHHHHCCCCEEECCCC-CCCCCEEEEEEEECCEEEEEEECCCCCCCCCHHHHHHHHHHH
T ss_conf 8635986998899987689999998578746731899-974040223689999899999899766557458899999999
Q ss_pred -HHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEEC
Q ss_conf -6420680599998366740235777898997099415612331244332000221000013200012347403631100
Q gi|254780787|r 450 -GARVTDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAK 528 (884)
Q Consensus 450 -g~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (884)
T Consensus 291 ~~~~~ADlil~v~D~s~~~~~~~~~~~~~~--~~~~~i~V~NK~DL~~~~~------------------~~~~~i~iSak 350 (445)
T PRK05291 291 KAIEEADLVLLVLDASEPLTEEDKEILEEF--KNKPVIVVLNKADLTGEKI------------------DGLPVIRISAK 350 (445)
T ss_pred HHHHHCCEEEEEEECCCCCCCCHHHHHHHC--CCCCEEEEEEHHHCCCCCC------------------CCCCEEEEECC
T ss_conf 999839999999879988872259999851--7998799985120466534------------------78975999837
Q ss_pred CCCCCCCCCCCHH
Q ss_conf 2477411221000
Q gi|254780787|r 529 NNLNLDKLLDAIL 541 (884)
Q Consensus 529 ~~~~~~~~~~~~~ 541 (884)
T Consensus 351 ~g~Gi~~L~~~i~ 363 (445)
T PRK05291 351 TGEGIDELEEALK 363 (445)
T ss_pred CCCCHHHHHHHHH
T ss_conf 8869999999999