HHsearch alignment for GI: 254780787 and conserved domain: PRK05703

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated.
Probab=96.73  E-value=0.012  Score=35.94  Aligned_cols=144  Identities=19%  Similarity=0.183  Sum_probs=80.2

Q ss_pred             CCCEEEEEECCCCCHHHHHHHHHHHHHH-HC--CCCCCEE---CCCEE--------------EEE------------CCC
Q ss_conf             5303898623685044677788642221-00--1231000---12149--------------995------------178
Q gi|254780787|r  382 RPPVVTIMGHVDHGKTSLLDAIRKADVA-KG--EIGGITQ---HIGAY--------------QVA------------YQG  429 (884)
Q Consensus       382 R~pvv~v~ghvd~GKt~lld~~r~~~~~-~~--e~ggitq---~iga~--------------~~~------------~~~  429 (884)
T Consensus       209 ~~~vvalVGPTGVGKTTTiAKLAA~~~l~~~~~kV~lIT~DtyRigA~eQLk~Ya~ilgvp~~v~~~~~~l~~al~~~~~  288 (412)
T PRK05703        209 QGGVVALVGPTGVGKTTTLAKLAARYALEEGKDKVALITLDTYRIGAVEQLKTYAKIMGIPVKVAYDPKELAKALEQLAN  288 (412)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHCC
T ss_conf             67369998888875676999999999997299817999837677779999999999719737984799999999987158


Q ss_pred             CEEEEEECCCHHHHHHHHHHH------HHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHH
Q ss_conf             438888516615789998666------42068059999836674023577789899709941561233124433200022
Q gi|254780787|r  430 KNITFLDTPGHAAFYEMRARG------ARVTDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLGADPQKVR  503 (884)
Q Consensus       430 ~~~~~iDtPGh~~f~~~r~rg------~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~~~~~~  503 (884)
T Consensus       289 ~dlILIDTaG~s~~d~~~~~eL~~~~~~~~~~~~~LVlsat--~~~~dl~~i~~~f~~~~~~~lI~TKlDEt~~~G~il~  366 (412)
T PRK05703        289 CDLILIDTAGRSQRDPRLISELKALIENSKPIDVYLVLSAT--TKYRDLKDIVKHFSRLPLDGLILTKLDETSSLGSILS  366 (412)
T ss_pred             CCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC--CCHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHH
T ss_conf             99799968988978999999999998624887189997598--9989999999984679998799971128998629999


Q ss_pred             HHHHCCCCCCCCCCCCCEEEEEEEC-CCCCCCCCCCCH
Q ss_conf             1000013200012347403631100-247741122100
Q gi|254780787|r  504 MSLLKHDVFVESMGGDILDVEISAK-NNLNLDKLLDAI  540 (884)
Q Consensus       504 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  540 (884)
T Consensus       367 -~~~~~------------~lplsy~t~GQ~VPeDi~~a  391 (412)
T PRK05703        367 -LLIES------------GLPISYLTDGQRVPDDIKVA  391 (412)
T ss_pred             -HHHHH------------CCCEEEEECCCCCHHHHHCC
T ss_conf             -99998------------87969994699972434228