HHsearch alignment for GI: 254780787 and conserved domain: PRK05703
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated.
Probab=96.73 E-value=0.012 Score=35.94 Aligned_cols=144 Identities=19% Similarity=0.183 Sum_probs=80.2
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHH-HC--CCCCCEE---CCCEE--------------EEE------------CCC
Q ss_conf 5303898623685044677788642221-00--1231000---12149--------------995------------178
Q gi|254780787|r 382 RPPVVTIMGHVDHGKTSLLDAIRKADVA-KG--EIGGITQ---HIGAY--------------QVA------------YQG 429 (884)
Q Consensus 382 R~pvv~v~ghvd~GKt~lld~~r~~~~~-~~--e~ggitq---~iga~--------------~~~------------~~~ 429 (884)
T Consensus 209 ~~~vvalVGPTGVGKTTTiAKLAA~~~l~~~~~kV~lIT~DtyRigA~eQLk~Ya~ilgvp~~v~~~~~~l~~al~~~~~ 288 (412)
T PRK05703 209 QGGVVALVGPTGVGKTTTLAKLAARYALEEGKDKVALITLDTYRIGAVEQLKTYAKIMGIPVKVAYDPKELAKALEQLAN 288 (412)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHCC
T ss_conf 67369998888875676999999999997299817999837677779999999999719737984799999999987158
Q ss_pred CEEEEEECCCHHHHHHHHHHH------HHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHH
Q ss_conf 438888516615789998666------42068059999836674023577789899709941561233124433200022
Q gi|254780787|r 430 KNITFLDTPGHAAFYEMRARG------ARVTDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLGADPQKVR 503 (884)
Q Consensus 430 ~~~~~iDtPGh~~f~~~r~rg------~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~~~~~~ 503 (884)
T Consensus 289 ~dlILIDTaG~s~~d~~~~~eL~~~~~~~~~~~~~LVlsat--~~~~dl~~i~~~f~~~~~~~lI~TKlDEt~~~G~il~ 366 (412)
T PRK05703 289 CDLILIDTAGRSQRDPRLISELKALIENSKPIDVYLVLSAT--TKYRDLKDIVKHFSRLPLDGLILTKLDETSSLGSILS 366 (412)
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC--CCHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHH
T ss_conf 99799968988978999999999998624887189997598--9989999999984679998799971128998629999
Q ss_pred HHHHCCCCCCCCCCCCCEEEEEEEC-CCCCCCCCCCCH
Q ss_conf 1000013200012347403631100-247741122100
Q gi|254780787|r 504 MSLLKHDVFVESMGGDILDVEISAK-NNLNLDKLLDAI 540 (884)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 540 (884)
T Consensus 367 -~~~~~------------~lplsy~t~GQ~VPeDi~~a 391 (412)
T PRK05703 367 -LLIES------------GLPISYLTDGQRVPDDIKVA 391 (412)
T ss_pred -HHHHH------------CCCEEEEECCCCCHHHHHCC
T ss_conf -99998------------87969994699972434228