HHsearch alignment for GI: 254780787 and conserved domain: PRK06731
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated.
Probab=91.82 E-value=0.84 Score=23.43 Aligned_cols=112 Identities=22% Similarity=0.253 Sum_probs=61.4
Q ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHH------HH-----HCCCCCCEE------CCCEEEEEC--------------
Q ss_conf 12553038986236850446777886422------21-----001231000------121499951--------------
Q gi|254780787|r 379 LDIRPPVVTIMGHVDHGKTSLLDAIRKAD------VA-----KGEIGGITQ------HIGAYQVAY-------------- 427 (884)
Q Consensus 379 ~~~R~pvv~v~ghvd~GKt~lld~~r~~~------~~-----~~e~ggitq------~iga~~~~~-------------- 427 (884)
T Consensus 71 ~~~~~~vI~lvG~~G~GKTTT~AKLA~~~~~~~~kV~lia~DtyR~aA~eQLk~~a~~l~v~~~~~~~~~~~~~~~~~~~ 150 (270)
T PRK06731 71 FEKEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFK 150 (270)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCEECCCCHHHHHHHHHHHH
T ss_conf 67998189998889898899999999999867990899983888888999999999981995354588789999999999
Q ss_pred --CCCEEEEEECCCHHHH-----HHH-HHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCC--CEEEECCCCCC
Q ss_conf --7843888851661578-----999-8666420680599998366740235777898997099--41561233124
Q gi|254780787|r 428 --QGKNITFLDTPGHAAF-----YEM-RARGARVTDIAVLVLAADEEIMPQAIESINHAKAADV--SIIVAINKIDK 494 (884)
Q Consensus 428 --~~~~~~~iDtPGh~~f-----~~~-r~rg~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~--p~iva~nk~d~ 494 (884)
T Consensus 151 ~~~~~DvilIDTAGR~~~d~~lm~el~~~~~~~~p~~~~Lvldas~~~----~~~~~~~~~f~~~~i~gvIlTKlD~ 223 (270)
T PRK06731 151 EEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS----KDMIEIITNFKDIHIDGIVFTKFDE 223 (270)
T ss_pred HHCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCH----HHHHHHHHHHCCCCCCEEEEECCCC
T ss_conf 976999999979998714699999999986063898799998687776----9999999980779998899965358