HHsearch alignment for GI: 254780787 and conserved domain: PRK11537
>PRK11537 putative GTP-binding protein YjiA; Provisional.
Probab=95.89 E-value=0.055 Score=31.52 Aligned_cols=114 Identities=18% Similarity=0.196 Sum_probs=68.5
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHH------HHHHCCCCCCEEC---CC-----EEEEECC-------------------
Q ss_conf 5303898623685044677788642------2210012310001---21-----4999517-------------------
Q gi|254780787|r 382 RPPVVTIMGHVDHGKTSLLDAIRKA------DVAKGEIGGITQH---IG-----AYQVAYQ------------------- 428 (884)
Q Consensus 382 R~pvv~v~ghvd~GKt~lld~~r~~------~~~~~e~ggitq~---ig-----a~~~~~~------------------- 428 (884)
T Consensus 3 ~IPVtiltGFLGaGKTTlL~~lL~~~~~~riaVivNEfGev~iD~~li~~~~~~v~eL~nGCiCCs~~~dl~~~l~~l~~ 82 (317)
T PRK11537 3 PIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLD 82 (317)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHCCCCCEEEECCCCEEEEECCHHHHHHHHHHH
T ss_conf 76889983088889999999997277899789998376145332988735653268844773687305228999999998
Q ss_pred -----C--CEEEEEECCCHHHHHHHHHH--------HHHCCCCEEEEEECCCCCCHHHHHHHHH-HHHCCCCEEEECCCC
Q ss_conf -----8--43888851661578999866--------6420680599998366740235777898-997099415612331
Q gi|254780787|r 429 -----G--KNITFLDTPGHAAFYEMRAR--------GARVTDIAVLVLAADEEIMPQAIESINH-AKAADVSIIVAINKI 492 (884)
Q Consensus 429 -----~--~~~~~iDtPGh~~f~~~r~r--------g~~~~d~~ilvv~~~~g~~~qt~e~~~~-~~~~~~p~iva~nk~ 492 (884)
T Consensus 83 ~~~~~~~~~D~IiIEtsGlAdP~~I~~~~~~~~~l~~~~~Ld~vVtvVDa~~~~~~--l~~~~~~~~Qi~~AD~illnK~ 160 (317)
T PRK11537 83 NLDRGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQ--MNQFTIAQSQVGYADRILLTKT 160 (317)
T ss_pred HHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHEECCCEEEEEEHHHHHHH--HHCCHHHHHHHHHCCEEEEECC
T ss_conf 66435777547999625778839999998612565653203655999866555766--5303466766631868997420
Q ss_pred CCCCC
Q ss_conf 24433
Q gi|254780787|r 493 DKLGA 497 (884)
Q Consensus 493 d~~~~ 497 (884)
T Consensus 161 Dlv~~ 165 (317)
T PRK11537 161 DVAGE 165 (317)
T ss_pred CCCCH
T ss_conf 02365