HHsearch alignment for GI: 254780787 and conserved domain: PRK11889
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional.
Probab=90.91 E-value=0.77 Score=23.72 Aligned_cols=142 Identities=18% Similarity=0.191 Sum_probs=76.1
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHH-HHHHCCCCCCEE---CCCEEE----------EEC-------------------CC
Q ss_conf 303898623685044677788642-221001231000---121499----------951-------------------78
Q gi|254780787|r 383 PPVVTIMGHVDHGKTSLLDAIRKA-DVAKGEIGGITQ---HIGAYQ----------VAY-------------------QG 429 (884)
Q Consensus 383 ~pvv~v~ghvd~GKt~lld~~r~~-~~~~~e~ggitq---~iga~~----------~~~-------------------~~ 429 (884)
T Consensus 241 ~q~IALVGPTGVGKTTTIAKLAArf~~~~KkVALITtDTYRIGAVEQLKTYAeIMgVPV~VV~dp~eL~~AL~~lkdka~ 320 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 320 (436)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHCCC
T ss_conf 71799989999888999999999986169808999806634769999999999849943996888999999998763368
Q ss_pred CEEEEEECCCHHHHHHHH------HHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHH
Q ss_conf 438888516615789998------66642068059999836674023577789899709941561233124433200022
Q gi|254780787|r 430 KNITFLDTPGHAAFYEMR------ARGARVTDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLGADPQKVR 503 (884)
Q Consensus 430 ~~~~~iDtPGh~~f~~~r------~rg~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~~~~~~ 503 (884)
T Consensus 321 ~DLILIDTAGRS~RD~~~I~EL~~~l~~~~p~ev~LVLSATTK--~~DL~eIi~rF~~l~idglIfTKLDET~SlG~ILN 398 (436)
T PRK11889 321 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKDIHIDGIVFTKFDETASSGELLK 398 (436)
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCC--HHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHH
T ss_conf 8889992989884689999999999851277716999978899--89999999972579988289971325687037888
Q ss_pred HHHHCCCCCCCCCCCCCEEEEEEEC-CCCCCCCCCCC
Q ss_conf 1000013200012347403631100-24774112210
Q gi|254780787|r 504 MSLLKHDVFVESMGGDILDVEISAK-NNLNLDKLLDA 539 (884)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 539 (884)
T Consensus 399 v~~~-------------s~LPIsYvTdGQ~VPEDIev 422 (436)
T PRK11889 399 IPAV-------------SSAPIVLMTDGQDVKKNIHI 422 (436)
T ss_pred HHHH-------------HCCCEEEECCCCCCCCCHHH
T ss_conf 9988-------------39987997899858753000