HHsearch alignment for GI: 254780787 and conserved domain: PRK12727
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional.
Probab=95.13 E-value=0.069 Score=30.85 Aligned_cols=142 Identities=19% Similarity=0.282 Sum_probs=80.4
Q ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHHC---CCCCCE---ECCCEEE----------EE----------------C
Q ss_conf 25530389862368504467778864222100---123100---0121499----------95----------------1
Q gi|254780787|r 380 DIRPPVVTIMGHVDHGKTSLLDAIRKADVAKG---EIGGIT---QHIGAYQ----------VA----------------Y 427 (884)
Q Consensus 380 ~~R~pvv~v~ghvd~GKt~lld~~r~~~~~~~---e~ggit---q~iga~~----------~~----------------~ 427 (884)
T Consensus 345 ~~~gGv~AlvGpTGvGKTTT~aKlAa~~~~~~g~~~valit~DtyRiga~eQL~~y~~ilgvpv~~~~~~~~l~~~l~~l 424 (557)
T PRK12727 345 LERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERL 424 (557)
T ss_pred HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHHH
T ss_conf 54076478743777673117999999999973998189997266408799999999998397579828999999999983
Q ss_pred CCCEEEEEECCCHHH--------HHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCC
Q ss_conf 784388885166157--------899986664206805999983667402357778989970994156123312443320
Q gi|254780787|r 428 QGKNITFLDTPGHAA--------FYEMRARGARVTDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLGADP 499 (884)
Q Consensus 428 ~~~~~~~iDtPGh~~--------f~~~r~rg~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~~ 499 (884)
T Consensus 425 ~~~~lvliDTaG~~~rd~~~~~~~~~l~-~~~~--~~~~Lvl~a~~--~~~~l~~~~~~~~~~~~~~~i~TKlDE~~~~G 499 (557)
T PRK12727 425 RDYKLVLIDTAGMGQRDRALAAQLNWLR-AARQ--VTSLLVLPANA--HFSDLDEVVRRFAHAKPQGVVLTKLDETGRFG 499 (557)
T ss_pred CCCCEEEEECCCCCCCCHHHHHHHHHHH-CCCC--CCEEEEEECCC--CHHHHHHHHHHHCCCCCCEEEEEECCCCCCCC
T ss_conf 6999899949998846999999999875-1477--63599996889--98999999998537998748996143678703
Q ss_pred CHHHHHHHCCCCCCCCCCCCCEEEEEEE-CCCCCCCCCCCC
Q ss_conf 0022100001320001234740363110-024774112210
Q gi|254780787|r 500 QKVRMSLLKHDVFVESMGGDILDVEISA-KNNLNLDKLLDA 539 (884)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 539 (884)
T Consensus 500 ~~l-~~~~~~------------~lp~~y~t~GQ~VPeDi~~ 527 (557)
T PRK12727 500 SAL-SVVVDH------------QMPITWVTDGQRVPDDLHR 527 (557)
T ss_pred HHH-HHHHHH------------CCCEEEECCCCCCCCCHHH
T ss_conf 999-999996------------8982897589828523643