HHsearch alignment for GI: 254780787 and conserved domain: TIGR00487
>TIGR00487 IF-2 translation initiation factor IF-2; InterPro: IPR000178 Initiation factor 2 (IF-2) (gene infB) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-2 promotes the GTP-dependent binding of the initiator tRNA to the small subunit of the ribosome. IF-2 is a protein of about 70 to 95 Kd which contains a central GTP-binding domain flanked by a highly variable N-terminal domain and a more conserved C-terminal domain. Bacterial IF-2 is structurally and functionally related to eukaryotic mitochondrial IF-2 (IF-2(mt)) as well as to algal and plants chloroplast IF-2 (IF-2(chl)). Both IF-2(mt) and IF-2(chl) are encoded by nuclear genes and are produced as precursor proteins with a transit peptide. An exception are red algae where IF-2(chl) is encoded by the plastid genome .; GO: 0003743 translation initiation factor activity, 0005525 GTP binding, 0006413 translational initiation, 0005622 intracellular.
Probab=100.00 E-value=0 Score=816.28 Aligned_cols=585 Identities=47% Similarity=0.751 Sum_probs=555.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHCCEEECCCCCCCHHHHHHHHH--HHCCCCCCCCCHHHHHHHHHHC-CC
Q ss_conf 11112111110000122222210013455530240002344553566776665--4101111222101233322101-24
Q gi|254780787|r 299 SREIVVPETITIQELSQRMSERSADVIKFLMKEGQIMKPGDVIDADLSEIIAN--EFGNTVKRVLESDIEVGIFDVA-DS 375 (884)
Q Consensus 299 ~rev~ipE~itv~ELA~~m~~~~~evik~l~~~G~~~t~nq~lD~etaelva~--E~g~ev~~~~~~~~~~~~~~~~-~~ 375 (884)
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 82 (594)
T TIGR00487 3 PEVIVIGGTLTVGELAEKLNLKLSDLIKKLFLLGLMVTINQVLDKDTAELLAENFEFGLKVELRVTLEETEAEELDEPDS 82 (594)
T ss_pred CCCEEECCCEEHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 76032045100777787532416789999986010321212210467888886520232012334444555554312453
Q ss_pred CCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEEEEECCCC--EEEEEECCCHHHHHHHHHHHHHC
Q ss_conf 1001255303898623685044677788642221001231000121499951784--38888516615789998666420
Q gi|254780787|r 376 ESDLDIRPPVVTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAYQVAYQGK--NITFLDTPGHAAFYEMRARGARV 453 (884)
Q Consensus 376 ~~~~~~R~pvv~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~~~~~~~~--~~~~iDtPGh~~f~~~r~rg~~~ 453 (884)
T Consensus 83 ~~~~~~~pp~~~~~gh~dhg~~~ll~~~~~~~~~~~~~gg~~~~~g~y~~~~~~~~~~~~f~d~pgh~~f~~~~~~g~~~ 162 (594)
T TIGR00487 83 GDLLVPRPPVVTIMGHVDHGKTSLLDSIRKTKVAAGEAGGITQHIGAYHVEKEDGKKWITFLDTPGHEAFTLMRARGAKV 162 (594)
T ss_pred HHHHHCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCHHHCCEEEEEECCCCEEEEEECCCCHHHHHHHHHCCCCE
T ss_conf 01110247636885123554034565554100001113652010130456642884379984077536778776337610
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCC
Q ss_conf 68059999836674023577789899709941561233124433200022100001320001234740363110024774
Q gi|254780787|r 454 TDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNL 533 (884)
Q Consensus 454 ~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (884)
T Consensus 163 ~d~~~~~~~~~dg~~~~~~~~~~h~~~~~~p~~~~~n~~d~p~~~pd~~~~~~~~~g~~~~~wgg~~~~~~~~~~~g~g~ 242 (594)
T TIGR00487 163 TDIVVLVVAADDGVKPQTIEAISHAKAANVPLIVAVNKIDKPEANPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDGI 242 (594)
T ss_pred EEEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCCHHCCCCEEEEEEECCCCCCH
T ss_conf 01579998415564235688765333307736998612467667877899998751775011278346886200136765
Q ss_pred CCCCCCHHCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHCCHHHCCCCCCCCCCCCCCEECCCCCCCCCCCCC
Q ss_conf 11221000023333420003486664167778863776200000000000000000256655542000146653221000
Q gi|254780787|r 534 DKLLDAILLQAEMLDLKTSINRKAEGIVVEGKLDRGRGPVVTVLVQKGTLSKGNILVVGDQWGKIRALFNDRGQGISKAV 613 (884)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 613 (884)
T Consensus 243 ~~l~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~g~g~~~~~~~~~g~l~~gd~~~~g~~~g~~~~~~~~~g~~~~~~~ 322 (594)
T TIGR00487 243 DELLDAILLQSEVEELKANPNGQASGTVLEAELDKGRGPVATVLVQSGTLRVGDSVVLGAAYGKVRALIDENGKSVKEAG 322 (594)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCEEEEEEECCCEECCCEEEEECCCCHHHHHHHHCCCHHHHCC
T ss_conf 78888888764344432032322220256410013656324566614720116413520321100001200242112127
Q ss_pred CCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCC
Q ss_conf 01222111123475555404312420366899999999999999877664456578888520001230233444333102
Q gi|254780787|r 614 PSMPIEVLGLQGMPMAGDKFGVVDSESRAREIAQYRQRVTRNKSMARRLGSHSALEKLVKNANISSKMKEFPVIIKGDVQ 693 (884)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~d~~ 693 (884)
T Consensus 323 p~~~~~~~g~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 401 (594)
T TIGR00487 323 PSKPVEILGLSDVPAAGDEFLVFKDEKDARLVAEKRAGKLKQKELSKSVK-AKVSLDNLFEQIKEGELKELNLILKADVQ 401 (594)
T ss_pred CCCEEEEECCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCCHHHEEEEEEECCC
T ss_conf 65215551355667677504775050456788877666677777754443-32247778876421420010045750453
Q ss_pred CCHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHC-CCEEEEECCCCCHHHHHHHHHCCCEEEEEEHHHHHHHH
Q ss_conf 31234555421157653565788512685757788764325-98799963899989999999839859975026789999
Q gi|254780787|r 694 GSVEAIVDSLGALKNSEVCLSIVHSSVGAINETDVSLAKAS-GAVIFGFNVRASSQARVLAIKDEIKILYYKIIYDLLDS 772 (884)
Q Consensus 694 gs~eal~~~l~~~~~~ev~i~v~~~~VG~v~~~DV~~A~~~-~a~Il~FnVkv~~~a~~~A~~~gV~I~~~~IIY~L~d~ 772 (884)
T Consensus 402 g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (594)
T TIGR00487 402 GSLEALKNSLEKLNNEEVKVKVIHSGVGGITETDISLASASEGAILIGFNVRPDGNAKNLAEAEGVDLRLYSVIYKLLDE 481 (594)
T ss_pred CHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCHHHEECCCCEEEEEEECCCCCCHHHHHHHHCCEEHHHHHHHHHHHH
T ss_conf 03799998886235343378986224564210100110036770798640355530234344313300013557899999
Q ss_pred HHHHHHHHCCCEEEEEEEEEEEEEEEEECCCCCCEEEEEEEEEEEECCCEEEEEECCEEEEEEEEHHHHHCCHHHHHHHC
Q ss_conf 99999630694047888878999788733898707899985217846980799669989982262576644600668727
Q gi|254780787|r 773 IKDSMSELLSPEIRETFLGNAEVLEVFAVTKLGNVAGCKVSEGKVERGSGVRLIRNSTVIYEGKLKTLKRFKDEVSEVHA 852 (884)
Q Consensus 773 ~~~~~~~~l~~~~~~~~~g~a~v~~vF~~~k~~~i~G~~V~~G~i~~~~~~~v~r~~~~i~~g~i~sl~~~k~~v~ev~~ 852 (884)
T Consensus 482 ~~~~~~g~~~p~~~~~~~g~~~~~~~~~~~~~g~~~g~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~ 561 (594)
T TIGR00487 482 IEAALEGLLDPEYEEEIIGLAEVRAVFNVPKIGTIAGCYVTEGVIKRGNPLRLLRDGVVIFEGEIDSLKRFKDDVKEVSE 561 (594)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCEEECCCCCEEEECCEEEECCCHHHHHHHCCHHHHHHC
T ss_conf 99987420151245555103555555315642210121021451212664124316525750523444430001577633
Q ss_pred CCEEEEEEECCEEEEECCEEEEEEEEEEEECC
Q ss_conf 97669997284110058989998899985149
Q gi|254780787|r 853 GQDCGMAFEKYDNIQAGDMIECFSIEHIKRSL 884 (884)
Q Consensus 853 g~ecgi~~~~~~~~~~gD~i~~~~~~~~~~~l 884 (884)
T Consensus 562 g~~cg~~~~~~~~~~~gd~~~~~~~~~~~~~~ 593 (594)
T TIGR00487 562 GYECGIGIDNYNDIKEGDIIEAFEVIEVKRTL 593 (594)
T ss_pred CCCCCEEECCCCCCCCCCHHHHHHHHHHHHCC
T ss_conf 32022132265543224213345555554205