HHsearch alignment for GI: 254780787 and conserved domain: TIGR00487

>TIGR00487 IF-2 translation initiation factor IF-2; InterPro: IPR000178 Initiation factor 2 (IF-2) (gene infB) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-2 promotes the GTP-dependent binding of the initiator tRNA to the small subunit of the ribosome. IF-2 is a protein of about 70 to 95 Kd which contains a central GTP-binding domain flanked by a highly variable N-terminal domain and a more conserved C-terminal domain. Bacterial IF-2 is structurally and functionally related to eukaryotic mitochondrial IF-2 (IF-2(mt)) as well as to algal and plants chloroplast IF-2 (IF-2(chl)). Both IF-2(mt) and IF-2(chl) are encoded by nuclear genes and are produced as precursor proteins with a transit peptide. An exception are red algae where IF-2(chl) is encoded by the plastid genome .; GO: 0003743 translation initiation factor activity, 0005525 GTP binding, 0006413 translational initiation, 0005622 intracellular.
Probab=100.00  E-value=0  Score=816.28  Aligned_cols=585  Identities=47%  Similarity=0.751  Sum_probs=555.1

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHCCEEECCCCCCCHHHHHHHHH--HHCCCCCCCCCHHHHHHHHHHC-CC
Q ss_conf             11112111110000122222210013455530240002344553566776665--4101111222101233322101-24
Q gi|254780787|r  299 SREIVVPETITIQELSQRMSERSADVIKFLMKEGQIMKPGDVIDADLSEIIAN--EFGNTVKRVLESDIEVGIFDVA-DS  375 (884)
Q Consensus       299 ~rev~ipE~itv~ELA~~m~~~~~evik~l~~~G~~~t~nq~lD~etaelva~--E~g~ev~~~~~~~~~~~~~~~~-~~  375 (884)
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~   82 (594)
T TIGR00487         3 PEVIVIGGTLTVGELAEKLNLKLSDLIKKLFLLGLMVTINQVLDKDTAELLAENFEFGLKVELRVTLEETEAEELDEPDS   82 (594)
T ss_pred             CCCEEECCCEEHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf             76032045100777787532416789999986010321212210467888886520232012334444555554312453


Q ss_pred             CCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEEEEECCCC--EEEEEECCCHHHHHHHHHHHHHC
Q ss_conf             1001255303898623685044677788642221001231000121499951784--38888516615789998666420
Q gi|254780787|r  376 ESDLDIRPPVVTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAYQVAYQGK--NITFLDTPGHAAFYEMRARGARV  453 (884)
Q Consensus       376 ~~~~~~R~pvv~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~~~~~~~~--~~~~iDtPGh~~f~~~r~rg~~~  453 (884)
T Consensus        83 ~~~~~~~pp~~~~~gh~dhg~~~ll~~~~~~~~~~~~~gg~~~~~g~y~~~~~~~~~~~~f~d~pgh~~f~~~~~~g~~~  162 (594)
T TIGR00487        83 GDLLVPRPPVVTIMGHVDHGKTSLLDSIRKTKVAAGEAGGITQHIGAYHVEKEDGKKWITFLDTPGHEAFTLMRARGAKV  162 (594)
T ss_pred             HHHHHCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCHHHCCEEEEEECCCCEEEEEECCCCHHHHHHHHHCCCCE
T ss_conf             01110247636885123554034565554100001113652010130456642884379984077536778776337610


Q ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCC
Q ss_conf             68059999836674023577789899709941561233124433200022100001320001234740363110024774
Q gi|254780787|r  454 TDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNL  533 (884)
Q Consensus       454 ~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  533 (884)
T Consensus       163 ~d~~~~~~~~~dg~~~~~~~~~~h~~~~~~p~~~~~n~~d~p~~~pd~~~~~~~~~g~~~~~wgg~~~~~~~~~~~g~g~  242 (594)
T TIGR00487       163 TDIVVLVVAADDGVKPQTIEAISHAKAANVPLIVAVNKIDKPEANPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDGI  242 (594)
T ss_pred             EEEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCCHHCCCCEEEEEEECCCCCCH
T ss_conf             01579998415564235688765333307736998612467667877899998751775011278346886200136765


Q ss_pred             CCCCCCHHCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHCCHHHCCCCCCCCCCCCCCEECCCCCCCCCCCCC
Q ss_conf             11221000023333420003486664167778863776200000000000000000256655542000146653221000
Q gi|254780787|r  534 DKLLDAILLQAEMLDLKTSINRKAEGIVVEGKLDRGRGPVVTVLVQKGTLSKGNILVVGDQWGKIRALFNDRGQGISKAV  613 (884)
Q Consensus       534 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  613 (884)
T Consensus       243 ~~l~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~g~g~~~~~~~~~g~l~~gd~~~~g~~~g~~~~~~~~~g~~~~~~~  322 (594)
T TIGR00487       243 DELLDAILLQSEVEELKANPNGQASGTVLEAELDKGRGPVATVLVQSGTLRVGDSVVLGAAYGKVRALIDENGKSVKEAG  322 (594)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCEEEEEEECCCEECCCEEEEECCCCHHHHHHHHCCCHHHHCC
T ss_conf             78888888764344432032322220256410013656324566614720116413520321100001200242112127


Q ss_pred             CCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCC
Q ss_conf             01222111123475555404312420366899999999999999877664456578888520001230233444333102
Q gi|254780787|r  614 PSMPIEVLGLQGMPMAGDKFGVVDSESRAREIAQYRQRVTRNKSMARRLGSHSALEKLVKNANISSKMKEFPVIIKGDVQ  693 (884)
Q Consensus       614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~d~~  693 (884)
T Consensus       323 p~~~~~~~g~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  401 (594)
T TIGR00487       323 PSKPVEILGLSDVPAAGDEFLVFKDEKDARLVAEKRAGKLKQKELSKSVK-AKVSLDNLFEQIKEGELKELNLILKADVQ  401 (594)
T ss_pred             CCCEEEEECCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCCHHHEEEEEEECCC
T ss_conf             65215551355667677504775050456788877666677777754443-32247778876421420010045750453


Q ss_pred             CCHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHC-CCEEEEECCCCCHHHHHHHHHCCCEEEEEEHHHHHHHH
Q ss_conf             31234555421157653565788512685757788764325-98799963899989999999839859975026789999
Q gi|254780787|r  694 GSVEAIVDSLGALKNSEVCLSIVHSSVGAINETDVSLAKAS-GAVIFGFNVRASSQARVLAIKDEIKILYYKIIYDLLDS  772 (884)
Q Consensus       694 gs~eal~~~l~~~~~~ev~i~v~~~~VG~v~~~DV~~A~~~-~a~Il~FnVkv~~~a~~~A~~~gV~I~~~~IIY~L~d~  772 (884)
T Consensus       402 g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  481 (594)
T TIGR00487       402 GSLEALKNSLEKLNNEEVKVKVIHSGVGGITETDISLASASEGAILIGFNVRPDGNAKNLAEAEGVDLRLYSVIYKLLDE  481 (594)
T ss_pred             CHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCHHHEECCCCEEEEEEECCCCCCHHHHHHHHCCEEHHHHHHHHHHHH
T ss_conf             03799998886235343378986224564210100110036770798640355530234344313300013557899999


Q ss_pred             HHHHHHHHCCCEEEEEEEEEEEEEEEEECCCCCCEEEEEEEEEEEECCCEEEEEECCEEEEEEEEHHHHHCCHHHHHHHC
Q ss_conf             99999630694047888878999788733898707899985217846980799669989982262576644600668727
Q gi|254780787|r  773 IKDSMSELLSPEIRETFLGNAEVLEVFAVTKLGNVAGCKVSEGKVERGSGVRLIRNSTVIYEGKLKTLKRFKDEVSEVHA  852 (884)
Q Consensus       773 ~~~~~~~~l~~~~~~~~~g~a~v~~vF~~~k~~~i~G~~V~~G~i~~~~~~~v~r~~~~i~~g~i~sl~~~k~~v~ev~~  852 (884)
T Consensus       482 ~~~~~~g~~~p~~~~~~~g~~~~~~~~~~~~~g~~~g~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~  561 (594)
T TIGR00487       482 IEAALEGLLDPEYEEEIIGLAEVRAVFNVPKIGTIAGCYVTEGVIKRGNPLRLLRDGVVIFEGEIDSLKRFKDDVKEVSE  561 (594)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCEEECCCCCEEEECCEEEECCCHHHHHHHCCHHHHHHC
T ss_conf             99987420151245555103555555315642210121021451212664124316525750523444430001577633


Q ss_pred             CCEEEEEEECCEEEEECCEEEEEEEEEEEECC
Q ss_conf             97669997284110058989998899985149
Q gi|254780787|r  853 GQDCGMAFEKYDNIQAGDMIECFSIEHIKRSL  884 (884)
Q Consensus       853 g~ecgi~~~~~~~~~~gD~i~~~~~~~~~~~l  884 (884)
T Consensus       562 g~~cg~~~~~~~~~~~gd~~~~~~~~~~~~~~  593 (594)
T TIGR00487       562 GYECGIGIDNYNDIKEGDIIEAFEVIEVKRTL  593 (594)
T ss_pred             CCCCCEEECCCCCCCCCCHHHHHHHHHHHHCC
T ss_conf             32022132265543224213345555554205