HHsearch alignment for GI: 254780787 and conserved domain: TIGR01393
>TIGR01393 lepA GTP-binding protein LepA; InterPro: IPR006297 LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function of the proteins in this family are unknown. ; GO: 0005525 GTP binding.
Probab=100.00 E-value=7.3e-42 Score=304.32 Aligned_cols=200 Identities=28% Similarity=0.417 Sum_probs=176.6
Q ss_pred EEEEEECCCCCHHHHHHHHHH-HHHHHCC--------------CCCCEECCCEEEEECC------CCEEEEEECCCHHHH
Q ss_conf 389862368504467778864-2221001--------------2310001214999517------843888851661578
Q gi|254780787|r 385 VVTIMGHVDHGKTSLLDAIRK-ADVAKGE--------------IGGITQHIGAYQVAYQ------GKNITFLDTPGHAAF 443 (884)
Q Consensus 385 vv~v~ghvd~GKt~lld~~r~-~~~~~~e--------------~ggitq~iga~~~~~~------~~~~~~iDtPGh~~f 443 (884)
T Consensus 5 NFsIIAHIDHGKSTLADRlle~T~~~s~R~m~~Q~LD~MDlERERGITIK~qaV~l~Yk~~~DGe~Y~LNLIDTPGHVDF 84 (598)
T TIGR01393 5 NFSIIAHIDHGKSTLADRLLEKTGAVSEREMREQVLDSMDLERERGITIKAQAVRLKYKVAKDGETYVLNLIDTPGHVDF 84 (598)
T ss_pred CEEEEEEECCCCCHHHHHHHHHCCCCCCHHHHHCCCCCCCEEECCCCEEECCCEEEEEEEECCCCEEEEEEECCCCCCCC
T ss_conf 26788462489324889999861745620254305775100000582011563475337533887889964528897212
Q ss_pred HHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEE
Q ss_conf 99986664206805999983667402357778989970994156123312443320002210000132000123474036
Q gi|254780787|r 444 YEMRARGARVTDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDV 523 (884)
Q Consensus 444 ~~~r~rg~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 523 (884)
T Consensus 85 sYEVSRSLAACEGALL~VDA~QGvEAQT~aN~YlAlE~dLeIIPViNKIDLP~Adpe~v~~eIe~~iGld~~-----~ai 159 (598)
T TIGR01393 85 SYEVSRSLAACEGALLLVDAAQGVEAQTLANVYLALENDLEIIPVINKIDLPSADPERVKKEIEEVIGLDAS-----EAI 159 (598)
T ss_pred CHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCC-----CCE
T ss_conf 737888888716403561410323588899998875618758477825368888858999987654188964-----303
Q ss_pred EEEECCCCCCCCCCCCHHCCCCCCCCCCCCC-CCCCCEEEEEEEECCCCCCHHHHHHCCHHHCCCCCCC
Q ss_conf 3110024774112210000233334200034-8666416777886377620000000000000000025
Q gi|254780787|r 524 EISAKNNLNLDKLLDAILLQAEMLDLKTSIN-RKAEGIVVEGKLDRGRGPVVTVLVQKGTLSKGNILVV 591 (884)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 591 (884)
T Consensus 160 ~~SAKtG~Gi~e~LEaIv--~~vPpP~Gd~~DapLkALIFDS~YD~YrGVv~~vRv~~G~ik~gD~I~~ 226 (598)
T TIGR01393 160 LASAKTGIGIEEILEAIV--KRVPPPKGDPDDAPLKALIFDSHYDNYRGVVVLVRVFEGTIKKGDKIRF 226 (598)
T ss_pred EEEECCCCCHHHHHHHHH--HCCCCCCCCCCCCCCEEEEEEEEECCCCEEEEEEEEEECEECCCCEEEE
T ss_conf 875036788899988971--0181001138886632278843543865089999995268646988999