HHsearch alignment for GI: 254780787 and conserved domain: TIGR01394
>TIGR01394 TypA_BipA GTP-binding protein TypA; InterPro: IPR006298 This bacterial (and Arabidopsis) protein, termed TypA or BipA, is a GTP-binding protein. It is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.; GO: 0005525 GTP binding, 0005622 intracellular.
Probab=100.00 E-value=1.6e-42 Score=308.76 Aligned_cols=237 Identities=30% Similarity=0.372 Sum_probs=190.5
Q ss_pred EEEEECCCCCHHHHHHHHHHHHH-HHCC-C----------------CCCEECCCEEEEECCC----CEEEEEECCCHHHH
Q ss_conf 89862368504467778864222-1001-2----------------3100012149995178----43888851661578
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADV-AKGE-I----------------GGITQHIGAYQVAYQG----KNITFLDTPGHAAF 443 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~-~~~e-~----------------ggitq~iga~~~~~~~----~~~~~iDtPGh~~f 443 (884)
T Consensus 4 IAIIAHVDHGKTTLVD~LL~Qsgf~f~~~~~~~~ER~MDSNDLErERGITILaKNTav~y~g~dG~~~INIvDTPGHADF 83 (609)
T TIGR01394 4 IAIIAHVDHGKTTLVDALLKQSGFTFRADNEAVAERVMDSNDLERERGITILAKNTAVRYNGKDGVTKINIVDTPGHADF 83 (609)
T ss_pred EEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHCCCCCCCEEEEEEECCCCCEEEEEEEECCCCCCC
T ss_conf 89998806994368988888765886415883213540676521001552013003662528897189977816898878
Q ss_pred HHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCC--CCCCCCCE
Q ss_conf 9998666420680599998366740235777898997099415612331244332000221000013200--01234740
Q gi|254780787|r 444 YEMRARGARVTDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLGADPQKVRMSLLKHDVFV--ESMGGDIL 521 (884)
Q Consensus 444 ~~~r~rg~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 521 (884)
T Consensus 84 GGEVERvL~MVDGvlLlVDA~EGPMPQTrFVL~KAL~~gLkPIVViNKiDrp~ARP~eV~d~vFDLF~~LgA~deQLDFP 163 (609)
T TIGR01394 84 GGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPSARPDEVVDEVFDLFIELGADDEQLDFP 163 (609)
T ss_pred CCEEEEECEEEEEEEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHH
T ss_conf 86588733024058999857888988534789999956893699971347887883788757878888538880010125
Q ss_pred EEEEEECCC---------------CCCCCCCCCHHCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHCCHHHCC
Q ss_conf 363110024---------------77411221000023333420003486664167778863776200000000000000
Q gi|254780787|r 522 DVEISAKNN---------------LNLDKLLDAILLQAEMLDLKTSINRKAEGIVVEGKLDRGRGPVVTVLVQKGTLSKG 586 (884)
Q Consensus 522 ~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 586 (884)
T Consensus 164 ~vYASa~~G~A~l~~~~dg~~~~~~~m~PLFd~I~--~hvPaP~~~~d~PlQmlvt~ldy~~y~GRI~~GRv~~G~vk~G 241 (609)
T TIGR01394 164 IVYASARAGWASLDKDKDGLDDDSEDMAPLFDAIL--RHVPAPKGDLDEPLQMLVTNLDYDEYLGRIAIGRVHRGTVKKG 241 (609)
T ss_pred HHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH--HCCCCCCCCCCCCHHHEEEECCCCCCCCEEEEEEEEECEECCC
T ss_conf 67665236720144665778872201789998986--4068889888762421000110146776699998750565468
Q ss_pred CCCCCCCC------CCCCEECCCCCCC---CCCCCCCCCCCCCCCCC
Q ss_conf 00025665------5542000146653---22100001222111123
Q gi|254780787|r 587 NILVVGDQ------WGKIRALFNDRGQ---GISKAVPSMPIEVLGLQ 624 (884)
Q Consensus 587 ~~~~~~~~------~~~v~~~~~~~~~---~~~~~~~~~~~~~~~~~ 624 (884)
T Consensus 242 q~V~~~~~d~g~~~~~ri~~L~~f~GL~R~~~d~A~AGDIvAvaG~~ 288 (609)
T TIGR01394 242 QQVALMKRDDGTIENGRISKLLGFEGLERVEIDEAGAGDIVAVAGLE 288 (609)
T ss_pred CEEEEEECCCCEEEEEEEEEEEECCCCEEEECCCCCCCCEEEEECCC
T ss_conf 64798724696897777645420157110004557987789990779