HHsearch alignment for GI: 254780787 and conserved domain: TIGR03156
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.36 E-value=1.3e-11 Score=97.43 Aligned_cols=146 Identities=27% Similarity=0.302 Sum_probs=98.6
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEC--CCEEEEECCCCEEEEEECCC---------HHHHHHHHHHH
Q ss_conf 53038986236850446777886422210012310001--21499951784388885166---------15789998666
Q gi|254780787|r 382 RPPVVTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQH--IGAYQVAYQGKNITFLDTPG---------HAAFYEMRARG 450 (884)
Q Consensus 382 R~pvv~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~--iga~~~~~~~~~~~~iDtPG---------h~~f~~~r~rg 450 (884)
T Consensus 188 ~~p~ValVGYTNAGKSTL~n~Lt~~~~~~~d~lFaTLd~t~r~~~l~-~~~~~ll~DTVGFI~~LP~~Li~aF~sTLee- 265 (351)
T TIGR03156 188 GVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLP-DGGEVLLTDTVGFIRDLPHELVAAFRATLEE- 265 (351)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEECCCCCCEEECC-CCCEEEEEECCCHHHHCCHHHHHHHHHHHHH-
T ss_conf 99769996678877899999985177641034313536732048879-9976999815005630886799999999999-
Q ss_pred HHCCCCEEEEEECCC-CCCHHHHHHHHHHHHC---CCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEE
Q ss_conf 420680599998366-7402357778989970---994156123312443320002210000132000123474036311
Q gi|254780787|r 451 ARVTDIAVLVLAADE-EIMPQAIESINHAKAA---DVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEIS 526 (884)
Q Consensus 451 ~~~~d~~ilvv~~~~-g~~~qt~e~~~~~~~~---~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 526 (884)
T Consensus 266 ~~~aDlllhVvD~S~~~~~~~~~~v~~~L~elg~~~~p~i~V~NKiD~~~~~~~---~~~~~------~---~~~~v~IS 333 (351)
T TIGR03156 266 VREADLLLHVVDASDPDREEQIEAVEEVLEELGAEDIPQLLVYNKIDLLDEPRI---ERLEE------G---YPEAVFVS 333 (351)
T ss_pred HHHCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECHHCCCHHHH---HHHHH------C---CCCEEEEE
T ss_conf 985989999805888478999999999999769999988999967015895778---99873------7---99879996
Q ss_pred ECCCCCCCCCCCCHH
Q ss_conf 002477411221000
Q gi|254780787|r 527 AKNNLNLDKLLDAIL 541 (884)
Q Consensus 527 ~~~~~~~~~~~~~~~ 541 (884)
T Consensus 334 A~~g~gi~~L~~~I~ 348 (351)
T TIGR03156 334 AKTGEGLDLLLEAIA 348 (351)
T ss_pred CCCCCCHHHHHHHHH
T ss_conf 899989999999999