HHsearch alignment for GI: 254780787 and conserved domain: cd00881
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=100.00 E-value=2.2e-37 Score=273.73 Aligned_cols=158 Identities=35% Similarity=0.458 Sum_probs=132.6
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCC----------------CCCEECCCEEEEECCCCEEEEEECCCHHHHHHHHHH
Q ss_conf 8986236850446777886422210012----------------310001214999517843888851661578999866
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEI----------------GGITQHIGAYQVAYQGKNITFLDTPGHAAFYEMRAR 449 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~----------------ggitq~iga~~~~~~~~~~~~iDtPGh~~f~~~r~r 449 (884)
T Consensus 2 v~iiGh~d~GKTTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~i~~iDTPGh~~f~~~~~~ 81 (189)
T cd00881 2 VGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVIR 81 (189)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHCCCEEEEEEEEEEECCEEEEEEECCCCHHHHHHHHH
T ss_conf 89991799899999999997647235686258885057778886384132227999989989999969981889999999
Q ss_pred HHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCC-CCCCHHHHHHHCCCC---------CCCCCCCC
Q ss_conf 64206805999983667402357778989970994156123312443-320002210000132---------00012347
Q gi|254780787|r 450 GARVTDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLG-ADPQKVRMSLLKHDV---------FVESMGGD 519 (884)
Q Consensus 450 g~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~-~~~~~~~~~~~~~~~---------~~~~~~~~ 519 (884)
T Consensus 82 ~l~~aD~ailvVda~~G~~~qt~~~~~~~~~~~~p~iv~iNKiD~~~~~~~~~~~~ei~~~l~~~~~~~~~~~~~~~~~~ 161 (189)
T cd00881 82 GLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEGTRNGLL 161 (189)
T ss_pred HHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCC
T ss_conf 98646856999987989987899999999976998799998971877562999999999998753210232110125887
Q ss_pred CEEEEEEECCCCCCCCCCCCHHCC
Q ss_conf 403631100247741122100002
Q gi|254780787|r 520 ILDVEISAKNNLNLDKLLDAILLQ 543 (884)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~~~ 543 (884)
T Consensus 162 ~piv~iSA~~G~gv~~Lld~i~~~ 185 (189)
T cd00881 162 VPIVPGSALTGIGVEELLEAIVEH 185 (189)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 759998886786979999999976