HHsearch alignment for GI: 254780787 and conserved domain: cd01860

>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.15  E-value=2.4e-10  Score=88.70  Aligned_cols=143  Identities=21%  Similarity=0.288  Sum_probs=95.6

Q ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEE----EEECCC--CEEEEEECCCHHHHHHHHHHHHHCCCCEEE
Q ss_conf             89862368504467778864222100123100012149----995178--438888516615789998666420680599
Q gi|254780787|r  386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAY----QVAYQG--KNITFLDTPGHAAFYEMRARGARVTDIAVL  459 (884)
Q Consensus       386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~----~~~~~~--~~~~~iDtPGh~~f~~~r~rg~~~~d~~il  459 (884)
T Consensus         4 ivviGd~~vGKTsli~r~~~~~f~~~----~~~Tig~~~~~k~i~~~~~~v~l~iwDtaG~e~~~~~~~~~~~~a~~~il   79 (163)
T cd01860           4 LVLLGDSSVGKSSLVLRFVKNEFSEN----QESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIV   79 (163)
T ss_pred             EEEECCCCCCHHHHHHHHHHCCCCCC----CCCCCCEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHCCCCCEEE
T ss_conf             99999599689999999943989998----68866678899999999999999999799971002788988516771499


Q ss_pred             EEECCCCCCHHHHHHHH----HHHH---CCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCC
Q ss_conf             99836674023577789----8997---0994156123312443320002210000132000123474036311002477
Q gi|254780787|r  460 VLAADEEIMPQAIESIN----HAKA---ADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLN  532 (884)
Q Consensus       460 vv~~~~g~~~qt~e~~~----~~~~---~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  532 (884)
T Consensus        80 vydit~---~~Sf~~~~~w~~~i~~~~~~~~~iilVgnK~DL~~~r--~V~~~e~~--~~a~~~--~~~~~E~SAk~~~n  150 (163)
T cd01860          80 VYDITS---EESFEKAKSWVKELQRNASPNIIIALVGNKADLESKR--QVSTEEAQ--EYADEN--GLLFFETSAKTGEN  150 (163)
T ss_pred             EEECCC---HHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHCC--CCCHHHHH--HHHHHC--CCEEEEECCCCCCC
T ss_conf             981899---7999999999999998559872367755335756508--99999999--999982--99799986265907


Q ss_pred             CCCCCCCHH
Q ss_conf             411221000
Q gi|254780787|r  533 LDKLLDAIL  541 (884)
Q Consensus       533 ~~~~~~~~~  541 (884)
T Consensus       151 V~e~F~~l~  159 (163)
T cd01860         151 VNELFTEIA  159 (163)
T ss_pred             HHHHHHHHH
T ss_conf             899999999