HHsearch alignment for GI: 254780787 and conserved domain: cd01868
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.15 E-value=1.7e-10 Score=89.83 Aligned_cols=146 Identities=20% Similarity=0.265 Sum_probs=94.8
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCE------EEEECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEE
Q ss_conf 8986236850446777886422210012310001214------9995178438888516615789998666420680599
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGA------YQVAYQGKNITFLDTPGHAAFYEMRARGARVTDIAVL 459 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga------~~~~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~il 459 (884)
T Consensus 6 iv~iGd~~VGKTsli~r~~~~~f~~~~----~~Tig~~~~~k~i~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~a~~~il 81 (165)
T cd01868 6 IVLIGDSGVGKSNLLSRFTRNEFNLDS----KSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 81 (165)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCC----CCCCCEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHHHCCCEEE
T ss_conf 999999997899999999729899988----9874478789999999999999999899972126789987332051489
Q ss_pred EEECCCCCCHHHHHHH-HHHHH---CCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCC
Q ss_conf 9983667402357778-98997---0994156123312443320002210000132000123474036311002477411
Q gi|254780787|r 460 VLAADEEIMPQAIESI-NHAKA---ADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLDK 535 (884)
Q Consensus 460 vv~~~~g~~~qt~e~~-~~~~~---~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (884)
T Consensus 82 vydit~~~Sf~~i~~w~~~i~~~~~~~~~iilVgnK~DL~~~r--~Vs~~e~~~--~a~~~--~~~~~E~SAk~g~nV~e 155 (165)
T cd01868 82 VYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLR--AVPTEEAKA--FAEKN--GLSFIETSALDGTNVEE 155 (165)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHC--CCCHHHHHH--HHHHC--CCEEEEECCCCCCCHHH
T ss_conf 8626988999999999999998555773598702347868857--888999999--99985--99799967888929899
Q ss_pred CCCCHH
Q ss_conf 221000
Q gi|254780787|r 536 LLDAIL 541 (884)
Q Consensus 536 ~~~~~~ 541 (884)
T Consensus 156 ~F~~l~ 161 (165)
T cd01868 156 AFKQLL 161 (165)
T ss_pred HHHHHH
T ss_conf 999999