HHsearch alignment for GI: 254780787 and conserved domain: cd01871

>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.09  E-value=7.1e-10  Score=85.52  Aligned_cols=149  Identities=17%  Similarity=0.230  Sum_probs=94.9

Q ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEEE---EECC--CCEEEEEECCCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             898623685044677788642221001231000121499---9517--84388885166157899986664206805999
Q gi|254780787|r  386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAYQ---VAYQ--GKNITFLDTPGHAAFYEMRARGARVTDIAVLV  460 (884)
Q Consensus       386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~~---~~~~--~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilv  460 (884)
T Consensus         4 ivlvGd~~VGKTsli~r~~~~~f~~~~----~~Ti~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~~~~~~~~~a~~~ilv   79 (174)
T cd01871           4 CVVVGDGAVGKTCLLISYTTNAFPGEY----IPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLIC   79 (174)
T ss_pred             EEEECCCCCCHHHHHHHHHHCCCCCCC----CCEEEEEEEEEEEECCEEEEEEEECCCCCCCCHHHHHHHHHHCCEEEEE
T ss_conf             999899998699999999739999986----8837887679999999999999986999724067889987406689999


Q ss_pred             EECCCCCCHHHHHHHH-----HHH--HCCCCEEEECCCCCCCCCCCCHHHHH------H-HCCCCCCCCCCCCCEEEEEE
Q ss_conf             9836674023577789-----899--70994156123312443320002210------0-00132000123474036311
Q gi|254780787|r  461 LAADEEIMPQAIESIN-----HAK--AADVSIIVAINKIDKLGADPQKVRMS------L-LKHDVFVESMGGDILDVEIS  526 (884)
Q Consensus       461 v~~~~g~~~qt~e~~~-----~~~--~~~~p~iva~nk~d~~~~~~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~  526 (884)
T Consensus        80 ydi~~~---~SF~~i~~~w~~~i~~~~~~~piiLVGnK~DL~~~~~~~~~~~~~~~~~vs~~eg~~~a~~~~~~~f~EtS  156 (174)
T cd01871          80 FSLVSP---ASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS  156 (174)
T ss_pred             EECCCH---HHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEECC
T ss_conf             867987---88999999999999985889997987473013100456778865146775899999999875997899918


Q ss_pred             ECCCCCCCCCCCCHH
Q ss_conf             002477411221000
Q gi|254780787|r  527 AKNNLNLDKLLDAIL  541 (884)
Q Consensus       527 ~~~~~~~~~~~~~~~  541 (884)
T Consensus       157 Ak~~~nV~e~F~~li  171 (174)
T cd01871         157 ALTQKGLKTVFDEAI  171 (174)
T ss_pred             CCCCCCHHHHHHHHH
T ss_conf             788959799999999