HHsearch alignment for GI: 254780787 and conserved domain: cd01871
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.09 E-value=7.1e-10 Score=85.52 Aligned_cols=149 Identities=17% Similarity=0.230 Sum_probs=94.9
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEEE---EECC--CCEEEEEECCCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 898623685044677788642221001231000121499---9517--84388885166157899986664206805999
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAYQ---VAYQ--GKNITFLDTPGHAAFYEMRARGARVTDIAVLV 460 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~~---~~~~--~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilv 460 (884)
T Consensus 4 ivlvGd~~VGKTsli~r~~~~~f~~~~----~~Ti~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~~~~~~~~~a~~~ilv 79 (174)
T cd01871 4 CVVVGDGAVGKTCLLISYTTNAFPGEY----IPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLIC 79 (174)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCC----CCEEEEEEEEEEEECCEEEEEEEECCCCCCCCHHHHHHHHHHCCEEEEE
T ss_conf 999899998699999999739999986----8837887679999999999999986999724067889987406689999
Q ss_pred EECCCCCCHHHHHHHH-----HHH--HCCCCEEEECCCCCCCCCCCCHHHHH------H-HCCCCCCCCCCCCCEEEEEE
Q ss_conf 9836674023577789-----899--70994156123312443320002210------0-00132000123474036311
Q gi|254780787|r 461 LAADEEIMPQAIESIN-----HAK--AADVSIIVAINKIDKLGADPQKVRMS------L-LKHDVFVESMGGDILDVEIS 526 (884)
Q Consensus 461 v~~~~g~~~qt~e~~~-----~~~--~~~~p~iva~nk~d~~~~~~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~ 526 (884)
T Consensus 80 ydi~~~---~SF~~i~~~w~~~i~~~~~~~piiLVGnK~DL~~~~~~~~~~~~~~~~~vs~~eg~~~a~~~~~~~f~EtS 156 (174)
T cd01871 80 FSLVSP---ASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 156 (174)
T ss_pred EECCCH---HHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEECC
T ss_conf 867987---88999999999999985889997987473013100456778865146775899999999875997899918
Q ss_pred ECCCCCCCCCCCCHH
Q ss_conf 002477411221000
Q gi|254780787|r 527 AKNNLNLDKLLDAIL 541 (884)
Q Consensus 527 ~~~~~~~~~~~~~~~ 541 (884)
T Consensus 157 Ak~~~nV~e~F~~li 171 (174)
T cd01871 157 ALTQKGLKTVFDEAI 171 (174)
T ss_pred CCCCCCHHHHHHHHH
T ss_conf 788959799999999