HHsearch alignment for GI: 254780787 and conserved domain: cd01876
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.82 E-value=1.2e-19 Score=152.44 Aligned_cols=151 Identities=20% Similarity=0.276 Sum_probs=111.0
Q ss_pred EEEEECCCCCHHHHHHHHHHH-HHH-HCCCCCCEECCCEEEEECCCCEEEEEECCC---HHHHHHHHH----------HH
Q ss_conf 898623685044677788642-221-001231000121499951784388885166---157899986----------66
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKA-DVA-KGEIGGITQHIGAYQVAYQGKNITFLDTPG---HAAFYEMRA----------RG 450 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~-~~~-~~e~ggitq~iga~~~~~~~~~~~~iDtPG---h~~f~~~r~----------rg 450 (884)
T Consensus 2 IaivG~pN~GKSTL~N~L~~~~~~~~vs~~~gtTr~i~~~~~---~~~~~~vDtPG~g~~~~~~~~~~~~~~~~~~~l~~ 78 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNV---NDKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLEN 78 (170)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCEEEEECCCCEEEEEEEEEE---CCEEEEEECCCCHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 899989999999999999689962786078977852058853---87799996578401016877999999999999984
Q ss_pred HHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCC
Q ss_conf 42068059999836674023577789899709941561233124433200022100001320001234740363110024
Q gi|254780787|r 451 ARVTDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNN 530 (884)
Q Consensus 451 ~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (884)
T Consensus 79 ~~~~~~vi~viD~~~~~~~~d~~i~~~l~~~~kp~iiVlNKiDlv~~~~--~~~~~~~~~~~l~~~~~~~~ii~iSA~~g 156 (170)
T cd01876 79 RENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKLKKSE--LAKALKEIKKELKLFEIDPPIILFSSLKG 156 (170)
T ss_pred HHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCCHHH--HHHHHHHHHHHHHCCCCCCEEEEEECCCC
T ss_conf 0633499999963223748689999999876998799998675378778--99999999998742179983999988999
Q ss_pred CCCCCCCCCHH
Q ss_conf 77411221000
Q gi|254780787|r 531 LNLDKLLDAIL 541 (884)
Q Consensus 531 ~~~~~~~~~~~ 541 (884)
T Consensus 157 ~gi~~L~~~I~ 167 (170)
T cd01876 157 QGIDELRALIE 167 (170)
T ss_pred CCHHHHHHHHH
T ss_conf 77999999999