HHsearch alignment for GI: 254780787 and conserved domain: cd01878
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.65 E-value=2.4e-15 Score=122.88 Aligned_cols=151 Identities=28% Similarity=0.336 Sum_probs=101.0
Q ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEEEEEC-CCCEEEEEECCCH---------HHHHHHHH
Q ss_conf 1255303898623685044677788642221001231000121499951-7843888851661---------57899986
Q gi|254780787|r 379 LDIRPPVVTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAYQVAY-QGKNITFLDTPGH---------AAFYEMRA 448 (884)
Q Consensus 379 ~~~R~pvv~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~~~~~-~~~~~~~iDtPGh---------~~f~~~r~ 448 (884)
T Consensus 37 ~~~g~p~VaivG~PNvGKSTLlN~L~g~~~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~i~~~p~~lie~~~~tl- 115 (204)
T cd01878 37 KRSGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFRSTL- 115 (204)
T ss_pred HHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEECCCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCHHHHHHHHHHH-
T ss_conf 7459987999889999899999999489963415677645763668995699779998368644678378999999999-
Q ss_pred HHHHCCCCEEEEEECCCCCCH-HHH---HHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEE
Q ss_conf 664206805999983667402-357---7789899709941561233124433200022100001320001234740363
Q gi|254780787|r 449 RGARVTDIAVLVLAADEEIMP-QAI---ESINHAKAADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVE 524 (884)
Q Consensus 449 rg~~~~d~~ilvv~~~~g~~~-qt~---e~~~~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 524 (884)
T Consensus 116 e~i~~AD~il~vvD~s~~~~~~~~~~~~~~l~~l~~~~k~~i~V~NKiDl~~~~~~~---~~~--------~~~~~~~i~ 184 (204)
T cd01878 116 EEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELE---ERL--------EAGRPDAVF 184 (204)
T ss_pred HHHHHCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHH---HHH--------HHCCCCEEE
T ss_conf 999739899999979985366779999999998065557607888670479957589---999--------708998799
Q ss_pred EEECCCCCCCCCCCCHH
Q ss_conf 11002477411221000
Q gi|254780787|r 525 ISAKNNLNLDKLLDAIL 541 (884)
Q Consensus 525 ~~~~~~~~~~~~~~~~~ 541 (884)
T Consensus 185 ISA~~g~Gid~L~~~I~ 201 (204)
T cd01878 185 ISAKTGEGLDELLEAIE 201 (204)
T ss_pred EECCCCCCHHHHHHHHH
T ss_conf 98868949999999999