HHsearch alignment for GI: 254780787 and conserved domain: cd01881
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.42 E-value=1.5e-12 Score=103.83 Aligned_cols=147 Identities=26% Similarity=0.268 Sum_probs=92.6
Q ss_pred EEECCCCCHHHHHHHHHHHHHHHCCCCCCEEC--CCEEEEECCCCEEEEEECCC-----HHHHHHHH--HHHHHCCCCEE
Q ss_conf 86236850446777886422210012310001--21499951784388885166-----15789998--66642068059
Q gi|254780787|r 388 IMGHVDHGKTSLLDAIRKADVAKGEIGGITQH--IGAYQVAYQGKNITFLDTPG-----HAAFYEMR--ARGARVTDIAV 458 (884)
Q Consensus 388 v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~--iga~~~~~~~~~~~~iDtPG-----h~~f~~~r--~rg~~~~d~~i 458 (884)
T Consensus 1 ivG~PNvGKSTL~N~Lt~~~~~v~~~pgTTr~~~~g~~~~~-~~~~i~~~DtpGi~~~~~~~~~~~~~~l~~~~~~d~il 79 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVP-DGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAIL 79 (176)
T ss_pred CCCCCCCCHHHHHHHHHCCCCEEECCCCCEEEEEEEEEEEC-CCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCEEE
T ss_conf 96999888999999996899603078996761246799947-99669999578754573378789999998741088999
Q ss_pred EEEECCCCCCHHHHH---HHHHH--------------HHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCE
Q ss_conf 999836674023577---78989--------------9709941561233124433200022100001320001234740
Q gi|254780787|r 459 LVLAADEEIMPQAIE---SINHA--------------KAADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDIL 521 (884)
Q Consensus 459 lvv~~~~g~~~qt~e---~~~~~--------------~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (884)
T Consensus 80 ~vvD~~~~~~~~~~~~~~~~~~i~~el~~~~~~~~~~~~~~kp~i~v~NK~Dl~~~~~~~--~~~----~~~~~~~~~~~ 153 (176)
T cd01881 80 HVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELE--EEL----VRELALEEGAE 153 (176)
T ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCEEEEEECEECCCHHHHH--HHH----HHHHHHCCCCC
T ss_conf 999898765545445899999999999971156655543269719999686034700315--999----99997468995
Q ss_pred EEEEEECCCCCCCCCCCCHH
Q ss_conf 36311002477411221000
Q gi|254780787|r 522 DVEISAKNNLNLDKLLDAIL 541 (884)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~ 541 (884)
T Consensus 154 ii~iSA~~~~gi~~L~~~i~ 173 (176)
T cd01881 154 VVPISAKTEEGLDELIRAIY 173 (176)
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 89997778879999999999