HHsearch alignment for GI: 254780787 and conserved domain: cd01884
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=100.00 E-value=1.3e-36 Score=268.32 Aligned_cols=150 Identities=31% Similarity=0.367 Sum_probs=120.0
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHH----------------HCCCCCCEECCCEEEEECCCCEEEEEECCCHHHHHHHHHH
Q ss_conf 898623685044677788642221----------------0012310001214999517843888851661578999866
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVA----------------KGEIGGITQHIGAYQVAYQGKNITFLDTPGHAAFYEMRAR 449 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~----------------~~e~ggitq~iga~~~~~~~~~~~~iDtPGh~~f~~~r~r 449 (884)
T Consensus 5 i~iiGHVDhGKTTL~~~l~~~~~~~~~~~~~~~~~~D~~~~EreRGiTI~~~~~~~~~~~~~~~~IDtPGH~dF~~~~i~ 84 (195)
T cd01884 5 VGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKNMIT 84 (195)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCHHCCCCHHHHCCCCCCCCEEEEEECCCEEEEECCCCCHHHHHHHHHH
T ss_conf 99996058869899999999886634444112001005466650588614418999608816996268960778889986
Q ss_pred HHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEECCCCCCCCCC--CCHHHHHHHCCCCCCCCCCCCCEEEEEE
Q ss_conf 64206805999983667402357778989970994-15612331244332--0002210000132000123474036311
Q gi|254780787|r 450 GARVTDIAVLVLAADEEIMPQAIESINHAKAADVS-IIVAINKIDKLGAD--PQKVRMSLLKHDVFVESMGGDILDVEIS 526 (884)
Q Consensus 450 g~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p-~iva~nk~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 526 (884)
T Consensus 85 g~~~~D~aiLVVdA~eGv~~QT~eh~~la~~lgi~~iiV~iNK~D~~~~~~~~~~v~~ei~~~l~~~g~~~~~~p~ip~S 164 (195)
T cd01884 85 GAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGDNTPIVRGS 164 (195)
T ss_pred HHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEE
T ss_conf 35113626899852778747899999999980999627999687789878999999999999998429995568299977
Q ss_pred ECCCCCCCC
Q ss_conf 002477411
Q gi|254780787|r 527 AKNNLNLDK 535 (884)
Q Consensus 527 ~~~~~~~~~ 535 (884)
T Consensus 165 a~~g~~~~~ 173 (195)
T cd01884 165 ALKALEGDD 173 (195)
T ss_pred HHHHHCCCC
T ss_conf 387535788