HHsearch alignment for GI: 254780787 and conserved domain: cd01886
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.95 E-value=3.8e-27 Score=203.69 Aligned_cols=125 Identities=32% Similarity=0.394 Sum_probs=112.4
Q ss_pred EEEEECCCCCHHHHHHHHHHH--------HHHHC------C----CCCCEECCCEEEEECCCCEEEEEECCCHHHHHHHH
Q ss_conf 898623685044677788642--------22100------1----23100012149995178438888516615789998
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKA--------DVAKG------E----IGGITQHIGAYQVAYQGKNITFLDTPGHAAFYEMR 447 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~--------~~~~~------e----~ggitq~iga~~~~~~~~~~~~iDtPGh~~f~~~r 447 (884)
T Consensus 2 iai~gH~gaGKTtL~EalL~~ag~i~r~G~v~~g~tv~D~~~eE~~R~isi~~~~~~~~w~~~~inliDTPG~~DF~~e~ 81 (270)
T cd01886 2 IGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIEV 81 (270)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCHHHHHCCCEEECCEEEEEECCEEEEEEECCCCHHHHHHH
T ss_conf 89996899998899999998668735581553897556684889876870733668999899899998696967889999
Q ss_pred HHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCC
Q ss_conf 666420680599998366740235777898997099415612331244332000221000013
Q gi|254780787|r 448 ARGARVTDIAVLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLGADPQKVRMSLLKHD 510 (884)
Q Consensus 448 ~rg~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~ 510 (884)
T Consensus 82 ~~aL~~~D~AviVv~a~~GVe~~T~~~w~~~~~~~lP~i~fINKmDre~ad~~~~l~~i~~~l 144 (270)
T cd01886 82 ERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRIAFVNKMDRTGADFFRVVEQIREKL 144 (270)
T ss_pred HHHHHHHCEEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHH
T ss_conf 999877555999984676442636999988998499989999887877887166899999985