HHsearch alignment for GI: 254780787 and conserved domain: cd01887
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=100.00 E-value=5.2e-42 Score=305.34 Aligned_cols=163 Identities=60% Similarity=0.871 Sum_probs=150.3
Q ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEEEEEC---CCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 03898623685044677788642221001231000121499951---784388885166157899986664206805999
Q gi|254780787|r 384 PVVTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAYQVAY---QGKNITFLDTPGHAAFYEMRARGARVTDIAVLV 460 (884)
Q Consensus 384 pvv~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~~~~~---~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilv 460 (884)
T Consensus 1 P~VaivG~~n~GKSTL~n~L~~~~~~~~~~~g~T~~i~~~~~~~~~~~~~~i~~iDTPGh~~f~~~~~~~~~~aD~~ilv 80 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILV 80 (168)
T ss_pred CEEEEEECCCCCHHHHHHHHHCCCCCEEECCCCEEEECEEEEEEEECCCCEEEEEECCCCHHHHHHHHHHHHHCCEEEEE
T ss_conf 98999948998598999998586750451698168715399998825887189998998167799999998626889999
Q ss_pred EECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCC-CCCCCCCEEEEEEECCCCCCCCCCCC
Q ss_conf 98366740235777898997099415612331244332000221000013200-01234740363110024774112210
Q gi|254780787|r 461 LAADEEIMPQAIESINHAKAADVSIIVAINKIDKLGADPQKVRMSLLKHDVFV-ESMGGDILDVEISAKNNLNLDKLLDA 539 (884)
Q Consensus 461 v~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (884)
T Consensus 81 vda~~g~~~~~~~~~~~l~~~~~p~ivviNKiD~~~~~~~~v~~~l~~~~~~~~~~~~~~~~iIpvSA~tG~gi~~L~~~ 160 (168)
T cd01887 81 VAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDLLEA 160 (168)
T ss_pred EECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCHHHCCCCCEEEEEECCCCCCHHHHHHH
T ss_conf 86466754589999999987699789999893089879899999999975452455289875999989999899999999
Q ss_pred HHCCCCC
Q ss_conf 0002333
Q gi|254780787|r 540 ILLQAEM 546 (884)
Q Consensus 540 ~~~~~~~ 546 (884)
T Consensus 161 i~~~a~~ 167 (168)
T cd01887 161 ILLLAEK 167 (168)
T ss_pred HHHHHHC
T ss_conf 9999715