HHsearch alignment for GI: 254780787 and conserved domain: cd01888
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=100.00 E-value=2.9e-37 Score=272.86 Aligned_cols=155 Identities=28% Similarity=0.390 Sum_probs=121.0
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHH--HC-CCCCCEECCCEEEEE-------------------------C--------CC
Q ss_conf 898623685044677788642221--00-123100012149995-------------------------1--------78
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVA--KG-EIGGITQHIGAYQVA-------------------------Y--------QG 429 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~--~~-e~ggitq~iga~~~~-------------------------~--------~~ 429 (884)
T Consensus 3 i~iiGHVDhGKSTLi~~L~g~~~~~~~~e~er~it~klg~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (203)
T cd01888 3 IGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETKLV 82 (203)
T ss_pred EEEEEEECCCHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCEEEECCCCCCCCCE
T ss_conf 99998857879999999708512440788867760311145666651112122310111101244214531456543112
Q ss_pred CEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCC-CHHHHHHHHHHHHCCCC-EEEECCCCCCCCCCC-CHHHHHH
Q ss_conf 43888851661578999866642068059999836674-02357778989970994-156123312443320-0022100
Q gi|254780787|r 430 KNITFLDTPGHAAFYEMRARGARVTDIAVLVLAADEEI-MPQAIESINHAKAADVS-IIVAINKIDKLGADP-QKVRMSL 506 (884)
Q Consensus 430 ~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~~~~g~-~~qt~e~~~~~~~~~~p-~iva~nk~d~~~~~~-~~~~~~~ 506 (884)
T Consensus 83 r~~tiiD~PGH~df~~nmi~Gas~aD~aiLvVdA~eG~~~~QT~eH~~l~~~lgv~~iIV~vNKmDlv~~~~~~~~~~ei 162 (203)
T cd01888 83 RHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDLVKEEQALENYEQI 162 (203)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 47999868987999999997664347668986436677507799999999984998636775077778867899999999
Q ss_pred HCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCHHC
Q ss_conf 001320001234740363110024774112210000
Q gi|254780787|r 507 LKHDVFVESMGGDILDVEISAKNNLNLDKLLDAILL 542 (884)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (884)
T Consensus 163 ~~~l--~~~~~~~~~iIPiSA~~G~NI~~ll~~i~~ 196 (203)
T cd01888 163 KKFV--KGTIAENAPIIPISAQLKYNIDVLLEYIVK 196 (203)
T ss_pred HHHH--CCCCCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 9985--521689985999147889799999999986