HHsearch alignment for GI: 254780787 and conserved domain: cd01892

>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.05  E-value=1.4e-09  Score=83.58  Aligned_cols=148  Identities=16%  Similarity=0.189  Sum_probs=98.1

Q ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEE----EEECCC--CEEEEEECCCHHHHHHHHHHHHHCCCCEEE
Q ss_conf             89862368504467778864222100123100012149----995178--438888516615789998666420680599
Q gi|254780787|r  386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAY----QVAYQG--KNITFLDTPGHAAFYEMRARGARVTDIAVL  459 (884)
Q Consensus       386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~----~~~~~~--~~~~~iDtPGh~~f~~~r~rg~~~~d~~il  459 (884)
T Consensus         7 ~~VlG~~~VGKTsLi~rf~~~~f~~~---~y~~Ti~~~~~~k~v~v~g~~~~L~i~Dt~g~e~~~~l~~~~~~~ad~~il   83 (169)
T cd01892           7 CFVLGAKGSGKSALLRAFLGRSFSLN---AYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVACL   83 (169)
T ss_pred             EEEECCCCCCHHHHHHHHHCCCCCCC---CCCCCCCCEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHCCCCEEEE
T ss_conf             99999999889999999964999866---656754661899999989999999998556532355665887546988999


Q ss_pred             EEECCCCCCHHHHHHHHHHH-----HCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCC
Q ss_conf             99836674023577789899-----7099415612331244332000221000013200012347403631100247741
Q gi|254780787|r  460 VLAADEEIMPQAIESINHAK-----AADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLD  534 (884)
Q Consensus       460 vv~~~~g~~~qt~e~~~~~~-----~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  534 (884)
T Consensus        84 VyDit~~---~SF~~i~~~~~~~~~~~~iP~vlVgNK~DL~~~r--qV~~--~e~~~~a~~~~~-~~~~e~SAktg~nv~  155 (169)
T cd01892          84 VYDSSDP---KSFSYCAEVYKKYFMLGEIPCLFVAAKADLDEQQ--QRYE--VQPDEFCRKLGL-PPPLHFSSKLGDSSN  155 (169)
T ss_pred             EEECCCH---HHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCC--CCCH--HHHHHHHHHCCC-CCCEEEEEECCCCHH
T ss_conf             9979987---8999999999970056898189998865542037--5467--769999998399-966699832798989


Q ss_pred             CCCCCHHCCC
Q ss_conf             1221000023
Q gi|254780787|r  535 KLLDAILLQA  544 (884)
Q Consensus       535 ~~~~~~~~~~  544 (884)
T Consensus       156 ~~F~~la~~a  165 (169)
T cd01892         156 ELFTKLATAA  165 (169)
T ss_pred             HHHHHHHHHH
T ss_conf             9999999997