HHsearch alignment for GI: 254780787 and conserved domain: cd01892
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.05 E-value=1.4e-09 Score=83.58 Aligned_cols=148 Identities=16% Similarity=0.189 Sum_probs=98.1
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEE----EEECCC--CEEEEEECCCHHHHHHHHHHHHHCCCCEEE
Q ss_conf 89862368504467778864222100123100012149----995178--438888516615789998666420680599
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAY----QVAYQG--KNITFLDTPGHAAFYEMRARGARVTDIAVL 459 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~----~~~~~~--~~~~~iDtPGh~~f~~~r~rg~~~~d~~il 459 (884)
T Consensus 7 ~~VlG~~~VGKTsLi~rf~~~~f~~~---~y~~Ti~~~~~~k~v~v~g~~~~L~i~Dt~g~e~~~~l~~~~~~~ad~~il 83 (169)
T cd01892 7 CFVLGAKGSGKSALLRAFLGRSFSLN---AYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVACL 83 (169)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCC---CCCCCCCCEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHCCCCEEEE
T ss_conf 99999999889999999964999866---656754661899999989999999998556532355665887546988999
Q ss_pred EEECCCCCCHHHHHHHHHHH-----HCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCC
Q ss_conf 99836674023577789899-----7099415612331244332000221000013200012347403631100247741
Q gi|254780787|r 460 VLAADEEIMPQAIESINHAK-----AADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLD 534 (884)
Q Consensus 460 vv~~~~g~~~qt~e~~~~~~-----~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (884)
T Consensus 84 VyDit~~---~SF~~i~~~~~~~~~~~~iP~vlVgNK~DL~~~r--qV~~--~e~~~~a~~~~~-~~~~e~SAktg~nv~ 155 (169)
T cd01892 84 VYDSSDP---KSFSYCAEVYKKYFMLGEIPCLFVAAKADLDEQQ--QRYE--VQPDEFCRKLGL-PPPLHFSSKLGDSSN 155 (169)
T ss_pred EEECCCH---HHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCC--CCCH--HHHHHHHHHCCC-CCCEEEEEECCCCHH
T ss_conf 9979987---8999999999970056898189998865542037--5467--769999998399-966699832798989
Q ss_pred CCCCCHHCCC
Q ss_conf 1221000023
Q gi|254780787|r 535 KLLDAILLQA 544 (884)
Q Consensus 535 ~~~~~~~~~~ 544 (884)
T Consensus 156 ~~F~~la~~a 165 (169)
T cd01892 156 ELFTKLATAA 165 (169)
T ss_pred HHHHHHHHHH
T ss_conf 9999999997