HHsearch alignment for GI: 254780787 and conserved domain: cd01893

>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.18  E-value=1.5e-10  Score=90.11  Aligned_cols=150  Identities=18%  Similarity=0.174  Sum_probs=97.7

Q ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEEEE----ECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             8986236850446777886422210012310001214999----517843888851661578999866642068059999
Q gi|254780787|r  386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAYQV----AYQGKNITFLDTPGHAAFYEMRARGARVTDIAVLVL  461 (884)
Q Consensus       386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~~~----~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv  461 (884)
T Consensus         3 iv~vGd~~VGKTsli~r~~~~~F~~~~----~~t~~~~~~~~~~~~~~v~l~i~DtaG~e~~~~~~~~~~~~a~~~ilvy   78 (166)
T cd01893           3 IVLIGDEGVGKSSLIMSLVSEEFPENV----PRVLPEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY   78 (166)
T ss_pred             EEEECCCCCCHHHHHHHHHHCCCCCCC----CCCCCCEEEEEEECCEEEEEEEEECCCCCCCCHHHHHHHCCCCEEEEEE
T ss_conf             999999998999999999849788877----7634568999998890999999989987230245798736898899997


Q ss_pred             ECCCCCCHHHHHH--HHHHH--HCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCC
Q ss_conf             8366740235777--89899--7099415612331244332000221000013200012347403631100247741122
Q gi|254780787|r  462 AADEEIMPQAIES--INHAK--AADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLDKLL  537 (884)
Q Consensus       462 ~~~~g~~~qt~e~--~~~~~--~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  537 (884)
T Consensus        79 dit~~~Sf~~i~~~w~~~i~~~~~~~piilvGNK~DL~~~r~~~~~e~--~~~~~~~~~~~~~~~~EtSAktg~nV~e~F  156 (166)
T cd01893          79 SVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAGLEE--EMLPIMNEFREIETCVECSAKTLINVSEVF  156 (166)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHH--HHHHHHHHHCCCCEEEEECCCCCCCHHHHH
T ss_conf             089877899999999999998689996899998865400250335889--999999973074889990658891989999


Q ss_pred             CCHH
Q ss_conf             1000
Q gi|254780787|r  538 DAIL  541 (884)
Q Consensus       538 ~~~~  541 (884)
T Consensus       157 ~~~~  160 (166)
T cd01893         157 YYAQ  160 (166)
T ss_pred             HHHH
T ss_conf             9999