HHsearch alignment for GI: 254780787 and conserved domain: cd01893
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.18 E-value=1.5e-10 Score=90.11 Aligned_cols=150 Identities=18% Similarity=0.174 Sum_probs=97.7
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEEEE----ECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 8986236850446777886422210012310001214999----517843888851661578999866642068059999
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAYQV----AYQGKNITFLDTPGHAAFYEMRARGARVTDIAVLVL 461 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~~~----~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv 461 (884)
T Consensus 3 iv~vGd~~VGKTsli~r~~~~~F~~~~----~~t~~~~~~~~~~~~~~v~l~i~DtaG~e~~~~~~~~~~~~a~~~ilvy 78 (166)
T cd01893 3 IVLIGDEGVGKSSLIMSLVSEEFPENV----PRVLPEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY 78 (166)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCC----CCCCCCEEEEEEECCEEEEEEEEECCCCCCCCHHHHHHHCCCCEEEEEE
T ss_conf 999999998999999999849788877----7634568999998890999999989987230245798736898899997
Q ss_pred ECCCCCCHHHHHH--HHHHH--HCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCC
Q ss_conf 8366740235777--89899--7099415612331244332000221000013200012347403631100247741122
Q gi|254780787|r 462 AADEEIMPQAIES--INHAK--AADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLDKLL 537 (884)
Q Consensus 462 ~~~~g~~~qt~e~--~~~~~--~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (884)
T Consensus 79 dit~~~Sf~~i~~~w~~~i~~~~~~~piilvGNK~DL~~~r~~~~~e~--~~~~~~~~~~~~~~~~EtSAktg~nV~e~F 156 (166)
T cd01893 79 SVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAGLEE--EMLPIMNEFREIETCVECSAKTLINVSEVF 156 (166)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHH--HHHHHHHHHCCCCEEEEECCCCCCCHHHHH
T ss_conf 089877899999999999998689996899998865400250335889--999999973074889990658891989999
Q ss_pred CCHH
Q ss_conf 1000
Q gi|254780787|r 538 DAIL 541 (884)
Q Consensus 538 ~~~~ 541 (884)
T Consensus 157 ~~~~ 160 (166)
T cd01893 157 YYAQ 160 (166)
T ss_pred HHHH
T ss_conf 9999