HHsearch alignment for GI: 254780787 and conserved domain: cd01894
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.76 E-value=1e-17 Score=139.12 Aligned_cols=145 Identities=22% Similarity=0.354 Sum_probs=113.6
Q ss_pred EEEECCCCCHHHHHHHHHHHHHH-HCCCCCCEECCCEEEEECCCCEEEEEECCCHH----HHHHHHH----HHHHCCCCE
Q ss_conf 98623685044677788642221-00123100012149995178438888516615----7899986----664206805
Q gi|254780787|r 387 TIMGHVDHGKTSLLDAIRKADVA-KGEIGGITQHIGAYQVAYQGKNITFLDTPGHA----AFYEMRA----RGARVTDIA 457 (884)
Q Consensus 387 ~v~ghvd~GKt~lld~~r~~~~~-~~e~ggitq~iga~~~~~~~~~~~~iDtPGh~----~f~~~r~----rg~~~~d~~ 457 (884)
T Consensus 1 aivG~pN~GKSsL~N~l~~~~~~ivs~~~gtTr~~~~~~~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~i~~ad~i 80 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVI 80 (157)
T ss_pred CCCCCCCCCHHHHHHHHHCCCCEEEECCCCCEEEEEEEEEEECCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCEE
T ss_conf 90489998899999999588753540799935667899999999889998578755566067899999999999865907
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCC
Q ss_conf 99998366740235777898997099415612331244332000221000013200012347403631100247741122
Q gi|254780787|r 458 VLVLAADEEIMPQAIESINHAKAADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLDKLL 537 (884)
Q Consensus 458 ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (884)
T Consensus 81 l~viDa~~~~~~~d~~i~~~l~~~~kp~i~v~NK~D~~~~~--~~~~~~~-------~l~~~-~~i~iSA~~g~Gid~L~ 150 (157)
T cd01894 81 LFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIKEE--DEAAEFY-------SLGFG-EPIPISAEHGRGIGDLL 150 (157)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCH--HHHHHHH-------HCCCC-CEEEEEEECCCCHHHHH
T ss_conf 99998999999899999999998479809999787165864--5699999-------65999-75999965894999999
Q ss_pred CCHH
Q ss_conf 1000
Q gi|254780787|r 538 DAIL 541 (884)
Q Consensus 538 ~~~~ 541 (884)
T Consensus 151 ~~I~ 154 (157)
T cd01894 151 DAIL 154 (157)
T ss_pred HHHH
T ss_conf 9999