HHsearch alignment for GI: 254780787 and conserved domain: cd01896
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.35 E-value=1.4e-11 Score=97.27 Aligned_cols=141 Identities=26% Similarity=0.298 Sum_probs=93.1
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEEEEECCCCEEEEEECCCHHHHH-------HHHHHHHHCCCCEE
Q ss_conf 89862368504467778864222100123100012149995178438888516615789-------99866642068059
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAYQVAYQGKNITFLDTPGHAAFY-------EMRARGARVTDIAV 458 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~~~~~~~~~~~~iDtPGh~~f~-------~~r~rg~~~~d~~i 458 (884)
T Consensus 3 V~LVG~PN~GKSTLln~LT~a~~~v~~ypfTT~~pi~g~~~~~~~~iqlvDtPGli~~a~~g~g~g~~~l~~~r~aD~il 82 (233)
T cd01896 3 VALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADLIL 82 (233)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCEEE
T ss_conf 99999999999999999978995436989787574777999899899999673002463333206899999987589999
Q ss_pred EEEECCCCCCH---------------------------------------------HHHHHHHHHHHCC-----------
Q ss_conf 99983667402---------------------------------------------3577789899709-----------
Q gi|254780787|r 459 LVLAADEEIMP---------------------------------------------QAIESINHAKAAD----------- 482 (884)
Q Consensus 459 lvv~~~~g~~~---------------------------------------------qt~e~~~~~~~~~----------- 482 (884)
T Consensus 83 ~VvD~~~~~~~~~~i~~eLe~~gi~l~~~~~~v~i~~~~~~gi~i~~~~~~~~~~~~~v--~~il~e~~i~~a~v~i~~~ 160 (233)
T cd01896 83 MVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTI--KAILREYKIHNADVLIRED 160 (233)
T ss_pred EEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCEEEECCCCCCCCCHHHH--HHHHHHHCCCCCEEEECCC
T ss_conf 99847982667899999998605110357876257771358678604566666888999--9999982767643786057
Q ss_pred ----------------CCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCHH
Q ss_conf ----------------94156123312443320002210000132000123474036311002477411221000
Q gi|254780787|r 483 ----------------VSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLDKLLDAIL 541 (884)
Q Consensus 483 ----------------~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (884)
T Consensus 161 ~t~dd~~d~i~~n~~y~P~i~V~NKiDl~~~e------e~~~-------~~~~~~~i~ISA~~g~gld~L~~~I~ 222 (233)
T cd01896 161 ITVDDLIDVIEGNRVYIPCLYVYNKIDLISIE------ELDL-------LARQPNSVVISAEKGLNLDELKERIW 222 (233)
T ss_pred CCHHHHHHHHHCCCCCCCEEEEEECCCCCCHH------HHHH-------HHCCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 88889899873576767379999740369989------9998-------64679859998888989899999999