HHsearch alignment for GI: 254780787 and conserved domain: cd01900
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=94.75 E-value=0.068 Score=30.89 Aligned_cols=99 Identities=23% Similarity=0.349 Sum_probs=61.7
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHC--CCCCCEECCCEEEEECCC---------------CEEEEEECCCHH-------
Q ss_conf 89862368504467778864222100--123100012149995178---------------438888516615-------
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKG--EIGGITQHIGAYQVAYQG---------------KNITFLDTPGHA------- 441 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~--e~ggitq~iga~~~~~~~---------------~~~~~iDtPGh~------- 441 (884)
T Consensus 1 ~GivGlpnvGKstlFnalT~~~~~~~nypf~ti~pn~g~v~VpD~Rl~~L~~~~~p~k~i~a~vefvDIaGLvkgAs~Ge 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CCEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCCC
T ss_conf 95647899988999999977998745899777268058996775658899873177651235789985465567752367
Q ss_pred ----HH-HHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEE-CCCCCCCCCCCCHHHHHHH
Q ss_conf ----78-999866642068059999836674023577789899709941561-2331244332000221000
Q gi|254780787|r 442 ----AF-YEMRARGARVTDIAVLVLAADEEIMPQAIESINHAKAADVSIIVA-INKIDKLGADPQKVRMSLL 507 (884)
Q Consensus 442 ----~f-~~~r~rg~~~~d~~ilvv~~~~g~~~qt~e~~~~~~~~~~p~iva-~nk~d~~~~~~~~~~~~~~ 507 (884)
T Consensus 81 GLGN~FL~~Ir~-----vDai~hVVR~-----------------F~d~~I~Hv~g~vD-P~rDieiI~~ELi 129 (274)
T cd01900 81 GLGNKFLSHIRE-----VDAIAHVVRC-----------------FEDDDITHVEGSVD-PVRDIEIINTELI 129 (274)
T ss_pred CCCHHHHHHHHH-----CCEEEEEHHH-----------------CCCCCCCCCCCCCC-HHHHHHHHHHHHH
T ss_conf 650899999873-----4634653211-----------------15773017899979-7999999999999