HHsearch alignment for GI: 254780787 and conserved domain: cd03691

>cd03691 BipA_TypA_II BipA_TypA_II: domain II of BipA (also called TypA) having homology to domain II of the elongation factors (EFs) EF-G and EF-Tu. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secretion.
Probab=96.65  E-value=0.0028  Score=40.33  Aligned_cols=69  Identities=29%  Similarity=0.446  Sum_probs=57.2

Q ss_pred             CCCCCEEEEEEEEEEEECCCEEEEEECCEEEEEEEEHHHHHC----CHHHHHHHCCCEEEEEEECCEEEEECCEE
Q ss_conf             898707899985217846980799669989982262576644----60066872797669997284110058989
Q gi|254780787|r  802 TKLGNVAGCKVSEGKVERGSGVRLIRNSTVIYEGKLKTLKRF----KDEVSEVHAGQDCGMAFEKYDNIQAGDMI  872 (884)
Q Consensus       802 ~k~~~i~G~~V~~G~i~~~~~~~v~r~~~~i~~g~i~sl~~~----k~~v~ev~~g~ecgi~~~~~~~~~~gD~i  872 (884)
T Consensus        12 ~~~Gri~~~RV~sG~lk~gd~v~~~~~~~~~~~~rv~~l~~~~g~~~~~v~~a~AGDIvai~--Gl~~~~iGdTl   84 (86)
T cd03691          12 DYVGRIAIGRIFRGTVKVGQQVAVVKRDGKIEKAKITKLFGFEGLKRVEVEEAEAGDIVAIA--GIEDITIGDTI   84 (86)
T ss_pred             CCCCEEEEEEEECCCCCCCCEEEEECCCCCEEECCCEEEEEEECCCCEEEEEECCCCEEEEC--CCCCCCCCCCC
T ss_conf             87755999998469517999899961678267622307689606985697187599999994--88888654713