HHsearch alignment for GI: 254780787 and conserved domain: cd03696
>cd03696 selB_II selB_II: this subfamily represents the domain of elongation factor SelB, homologous to domain II of EF-Tu. SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation.
Probab=97.97 E-value=1.5e-05 Score=55.94 Aligned_cols=78 Identities=21% Similarity=0.399 Sum_probs=69.9
Q ss_pred EEEEEEEECCCCCCEEEEEEEEEEEECCCEEEEEECCEEEEEEEEHHHHHCCHHHHHHHCCCEEEEEEECC--EEEEECC
Q ss_conf 99978873389870789998521784698079966998998226257664460066872797669997284--1100589
Q gi|254780787|r 793 AEVLEVFAVTKLGNVAGCKVSEGKVERGSGVRLIRNSTVIYEGKLKTLKRFKDEVSEVHAGQDCGMAFEKY--DNIQAGD 870 (884)
Q Consensus 793 a~v~~vF~~~k~~~i~G~~V~~G~i~~~~~~~v~r~~~~i~~g~i~sl~~~k~~v~ev~~g~ecgi~~~~~--~~~~~gD 870 (884)
T Consensus 3 ~~Id~~F~i~G~GtVvtGtv~sG~i~~gd~l~i~P~~~~~---~VksI~~~~~~~~~a~aG~~v~i~L~~i~~~di~rG~ 79 (83)
T cd03696 3 LPIDRVFTVKGQGTVVTGTVLSGSVKVGDKVEILPLGEET---RVRSIQVHGKDVEEAKAGDRVALNLTGVDAKDLERGD 79 (83)
T ss_pred EEEEEEEECCCCEEEEEEEECCCCCCCCCEEEECCCCCEE---EEEEEEECCCEECEECCCCEEEEEEECCCHHHCCCCC
T ss_conf 4886899818957999999967985699999997877338---9999998995968897998799997589767358678
Q ss_pred EEE
Q ss_conf 899
Q gi|254780787|r 871 MIE 873 (884)
Q Consensus 871 ~i~ 873 (884)
T Consensus 80 vl~ 82 (83)
T cd03696 80 VLS 82 (83)
T ss_pred EEE
T ss_conf 991