HHsearch alignment for GI: 254780787 and conserved domain: cd03698

>cd03698 eRF3_II_like eRF3_II_like: domain similar to domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM
Probab=97.87  E-value=3.8e-05  Score=53.19  Aligned_cols=78  Identities=18%  Similarity=0.347  Sum_probs=68.9

Q ss_pred             EEEEEEEEECCCCCCEEEEEEEEEEEECCCEEEEEECCEEEEEEEEHHHHHCCHHHHHHHCCCEEEEEEEC--CEEEEEC
Q ss_conf             89997887338987078999852178469807996699899822625766446006687279766999728--4110058
Q gi|254780787|r  792 NAEVLEVFAVTKLGNVAGCKVSEGKVERGSGVRLIRNSTVIYEGKLKTLKRFKDEVSEVHAGQDCGMAFEK--YDNIQAG  869 (884)
Q Consensus       792 ~a~v~~vF~~~k~~~i~G~~V~~G~i~~~~~~~v~r~~~~i~~g~i~sl~~~k~~v~ev~~g~ecgi~~~~--~~~~~~g  869 (884)
T Consensus         3 R~pI~~v~~~~g-G~vv~G~v~sG~i~~Gd~v~i~P~~~~---~~VksI~~~~~~~~~A~aG~~V~l~L~gid~~~i~rG   78 (83)
T cd03698           3 RLPISDKYKDQG-GTVVSGKVESGSIQKGDTLLVMPSKES---VEVKSIYVDDEEVDYAVAGENVRLKLKGIDEEDISPG   78 (83)
T ss_pred             EEEEEEEEECCC-CCEEEEEEEECEECCCCEEEEECCCCE---EEEEEEEECCEEECEECCCCEEEEEECCCCHHHCCCC
T ss_conf             989974798699-739999990258728999999789988---9999999999172988899979999848989994798


Q ss_pred             CEEE
Q ss_conf             9899
Q gi|254780787|r  870 DMIE  873 (884)
Q Consensus       870 D~i~  873 (884)
T Consensus        79 ~vlc   82 (83)
T cd03698          79 DVLC   82 (83)
T ss_pred             CEEE
T ss_conf             8994