HHsearch alignment for GI: 254780787 and conserved domain: cd04092
>cd04092 mtEFG2_II_like mtEFG2_C: C-terminus of mitochondrial Elongation factor G2 (mtEFG2)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. No clear phenotype has been found for mutants in the yeast homologue of mtEFG2, MEF2. There are two forms of mtEFG present in mammals (designated mtEFG1s and mtEFG2s) mtEFG1s are n
Probab=95.23 E-value=0.078 Score=30.49 Aligned_cols=75 Identities=19% Similarity=0.210 Sum_probs=57.6
Q ss_pred EEEEC---CCCCCEEEEEEEEEEEECCCEEEEEECCEEEEEEEEHHHH-HCCHHHHHHHCCCEEEEEEECCEEEEECCEE
Q ss_conf 88733---8987078999852178469807996699899822625766-4460066872797669997284110058989
Q gi|254780787|r 797 EVFAV---TKLGNVAGCKVSEGKVERGSGVRLIRNSTVIYEGKLKTLK-RFKDEVSEVHAGQDCGMAFEKYDNIQAGDMI 872 (884)
Q Consensus 797 ~vF~~---~k~~~i~G~~V~~G~i~~~~~~~v~r~~~~i~~g~i~sl~-~~k~~v~ev~~g~ecgi~~~~~~~~~~gD~i 872 (884)
T Consensus 4 lVFK~~~D~~~G~ls~vRVysG~l~~g~~v~n~~~~~~ekv~~l~~~~g~~~~~v~~~~AGdI~av--~gl~~~~tGDTl 81 (83)
T cd04092 4 LAFKVVHDPQRGPLTFVRVYSGTLKRGSALYNTNTGKKERISRLLQPFADQYQEIPSLSAGNIGVI--TGLKQTRTGDTL 81 (83)
T ss_pred EEEEEECCCCCCCEEEEEEEECEECCCCEEEECCCCCEEEEEEEEEEECCCCEECCEECCCCEEEE--ECCCCCCCCCEE
T ss_conf 999865079844099999970789789999968899629730888975799329978969989999--787786038897
Q ss_pred E
Q ss_conf 9
Q gi|254780787|r 873 E 873 (884)
Q Consensus 873 ~ 873 (884)
T Consensus 82 t 82 (83)
T cd04092 82 V 82 (83)
T ss_pred C
T ss_conf 5