HHsearch alignment for GI: 254780787 and conserved domain: cd04101
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.05 E-value=2.2e-09 Score=82.15 Aligned_cols=148 Identities=13% Similarity=0.219 Sum_probs=96.0
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEE----EEECC-C--CEEEEEECCCHHHHHHHHHHHHHCCCCEE
Q ss_conf 89862368504467778864222100123100012149----99517-8--43888851661578999866642068059
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAY----QVAYQ-G--KNITFLDTPGHAAFYEMRARGARVTDIAV 458 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~----~~~~~-~--~~~~~iDtPGh~~f~~~r~rg~~~~d~~i 458 (884)
T Consensus 3 ivllGd~gVGKTsli~r~~~~~~~f~~--~y~~Tig~~~~~k~~~~~~~~~i~l~iwDtaG~e~~~~l~~~~~~~a~~~i 80 (164)
T cd04101 3 CAVVGDPAVGKTAFVQMFHSNGAVFPK--NYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCC--CCCCCCCEEEEEEEEEECCCCEEEEEEEECCCCCCHHHHHHHHHHHCCEEE
T ss_conf 999995995889999999978886688--888864578899999978997999999979998400678999976426899
Q ss_pred EEEECCCCCCHHHHHH-HHHHH--HCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCC
Q ss_conf 9998366740235777-89899--70994156123312443320002210000132000123474036311002477411
Q gi|254780787|r 459 LVLAADEEIMPQAIES-INHAK--AADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLDK 535 (884)
Q Consensus 459 lvv~~~~g~~~qt~e~-~~~~~--~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (884)
T Consensus 81 lvydit~~~Sf~~~~~w~~~i~~~~~~~p~ilVgNK~DL~~~r--~V~~~e~~--~~a~~~--~~~~~E~SAk~g~nV~e 154 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLADKA--EVTDAQAQ--AFAQAN--QLKFFKTSALRGVGYEE 154 (164)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCC--CCCHHHHH--HHHHHC--CCEEEEECCCCCCCHHH
T ss_conf 9970774668999999999999766898689998722445245--56999999--999988--99899986688909899
Q ss_pred CCCCHH
Q ss_conf 221000
Q gi|254780787|r 536 LLDAIL 541 (884)
Q Consensus 536 ~~~~~~ 541 (884)
T Consensus 155 ~F~~la 160 (164)
T cd04101 155 PFESLA 160 (164)
T ss_pred HHHHHH
T ss_conf 999999