HHsearch alignment for GI: 254780787 and conserved domain: cd04103
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=98.65 E-value=1.3e-07 Score=70.00 Aligned_cols=144 Identities=14% Similarity=0.217 Sum_probs=89.7
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEEEE--ECC--CCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 8986236850446777886422210012310001214999--517--843888851661578999866642068059999
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAYQV--AYQ--GKNITFLDTPGHAAFYEMRARGARVTDIAVLVL 461 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~~~--~~~--~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv 461 (884)
T Consensus 3 ivllGd~~VGKTsl~~Rf~~~~F~~~~~---pt-~~~~~~~~~vdg~~~~l~i~DTaG~~~~~~~~-----~ada~ilVy 73 (158)
T cd04103 3 LGIVGNLQSGKSALVHRYLTGSYVQLES---PE-GGRFKKEVLVDGQSHLLLIRDEGGAPDAQFAS-----WVDAVIFVF 73 (158)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCC---CC-CCEEEEEEEECCEEEEEEEEECCCCCCHHHHC-----CCCEEEEEE
T ss_conf 9999969987999999998094787444---66-44179999999999999999589983433321-----499899999
Q ss_pred ECCCCCCHHHHHHHH-HHHH----CCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCC
Q ss_conf 836674023577789-8997----09941561233124433200022100001320001234740363110024774112
Q gi|254780787|r 462 AADEEIMPQAIESIN-HAKA----ADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLDKL 536 (884)
Q Consensus 462 ~~~~g~~~qt~e~~~-~~~~----~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (884)
T Consensus 74 dit~~~SF~~v~~~~~~i~~~~~~~~ipiilvGnK~dl~~~~~r~V~~~e~~~--~a~~~-~~~~f~EtSAk~~~NV~~~ 150 (158)
T cd04103 74 SLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQ--LCADM-KRCSYYETCATYGLNVERV 150 (158)
T ss_pred ECCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCEECCHHHHHH--HHHHC-CCCEEEEEECCCCCCHHHH
T ss_conf 88988899999999999998559789968999877003657761479999999--99856-9988999017999598999
Q ss_pred CCCHH
Q ss_conf 21000
Q gi|254780787|r 537 LDAIL 541 (884)
Q Consensus 537 ~~~~~ 541 (884)
T Consensus 151 F~~~~ 155 (158)
T cd04103 151 FQEAA 155 (158)
T ss_pred HHHHH
T ss_conf 99999