HHsearch alignment for GI: 254780787 and conserved domain: cd04108
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.07 E-value=6.5e-10 Score=85.76 Aligned_cols=148 Identities=16% Similarity=0.169 Sum_probs=95.8
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCE------EEEECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEE
Q ss_conf 8986236850446777886422210012310001214------9995178438888516615789998666420680599
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGA------YQVAYQGKNITFLDTPGHAAFYEMRARGARVTDIAVL 459 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga------~~~~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~il 459 (884)
T Consensus 3 ivlvGd~~VGKTsli~r~~~~~f~~~----y~~Tig~d~~~k~~~v~~~~~~l~iwDtaGqe~f~~l~~~y~r~a~~~il 78 (170)
T cd04108 3 VIVVGDLSVGKTCLINRFCKDVFDKN----YKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIII 78 (170)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCC----CCCCCCEEEEEEEEEECCEEEEEEEEECCCCCCCCCCHHHHHCCCCEEEE
T ss_conf 99999899898999999963988997----25634505899999999999999999899997466443777327875899
Q ss_pred EEECCCCCCHHHHHHHH--HHHHC---CCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCC
Q ss_conf 99836674023577789--89970---99415612331244332000221000013200012347403631100247741
Q gi|254780787|r 460 VLAADEEIMPQAIESIN--HAKAA---DVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLD 534 (884)
Q Consensus 460 vv~~~~g~~~qt~e~~~--~~~~~---~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (884)
T Consensus 79 vyDvt~~~Sf~~~~~w~~~~~~~~~~~~~~i~LvgNK~DL~~~~~~~~~~~--~~~~~a~~~--~~~~~E~SAk~g~nV~ 154 (170)
T cd04108 79 VFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQ--DAIKLAAEM--QAEYWSVSALSGENVR 154 (170)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCEEEEEHH--HHHHHHHHC--CCEEEEECCCCCCCHH
T ss_conf 997898789999999999999850899982999998413798755764489--999999877--9879998557881879
Q ss_pred CCCCCHH
Q ss_conf 1221000
Q gi|254780787|r 535 KLLDAIL 541 (884)
Q Consensus 535 ~~~~~~~ 541 (884)
T Consensus 155 e~F~~ia 161 (170)
T cd04108 155 EFFFRVA 161 (170)
T ss_pred HHHHHHH
T ss_conf 9999999