HHsearch alignment for GI: 254780787 and conserved domain: cd04117

>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.05  E-value=5.6e-10  Score=86.19  Aligned_cols=143  Identities=19%  Similarity=0.229  Sum_probs=95.5

Q ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCE-E---EEECC--CCEEEEEECCCHHHHHHHHHHHHHCCCCEEE
Q ss_conf             8986236850446777886422210012310001214-9---99517--8438888516615789998666420680599
Q gi|254780787|r  386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGA-Y---QVAYQ--GKNITFLDTPGHAAFYEMRARGARVTDIAVL  459 (884)
Q Consensus       386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga-~---~~~~~--~~~~~~iDtPGh~~f~~~r~rg~~~~d~~il  459 (884)
T Consensus         3 IvllGd~~VGKTsli~r~~~~~f~~~~----~~Tig~~~~~k~v~~~~~~i~l~iwDtaGqe~~~~~~~~y~r~a~~~il   78 (161)
T cd04117           3 LLLIGDSGVGKTCLLCRFTDNEFHSSH----ISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFL   78 (161)
T ss_pred             EEEECCCCCCHHHHHHHHHCCCCCCCC----CCCCEEEEEEEEEEECCEEEEEEEEECCCCCCCCCCHHHHHHHHCEEEE
T ss_conf             999994998589999999429989987----8872089889999999999999999799960236355888764168899


Q ss_pred             EEECCCCCCHHHHHHH----HHHHH---CCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCC
Q ss_conf             9983667402357778----98997---0994156123312443320002210000132000123474036311002477
Q gi|254780787|r  460 VLAADEEIMPQAIESI----NHAKA---ADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLN  532 (884)
Q Consensus       460 vv~~~~g~~~qt~e~~----~~~~~---~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  532 (884)
T Consensus        79 vyDvt~---~~Sf~~l~~w~~~i~~~~~~~~~~ilVgNK~Dl~~~r~--v~~~~~--~~~a~~~--~~~~~etSAk~~~n  149 (161)
T cd04117          79 VYDISS---ERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQ--VGDEQG--NKLAKEY--GMDFFETSACTNSN  149 (161)
T ss_pred             ECCCCC---HHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHCCC--CCHHHH--HHHHHHC--CCEEEEECCCCCCC
T ss_conf             614898---89999999999999987899864999873278786277--999999--9999986--99799967789829


Q ss_pred             CCCCCCCHH
Q ss_conf             411221000
Q gi|254780787|r  533 LDKLLDAIL  541 (884)
Q Consensus       533 ~~~~~~~~~  541 (884)
T Consensus       150 V~e~F~~l~  158 (161)
T cd04117         150 IKESFTRLT  158 (161)
T ss_pred             HHHHHHHHH
T ss_conf             899999999