HHsearch alignment for GI: 254780787 and conserved domain: cd04119
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.18 E-value=2e-10 Score=89.26 Aligned_cols=150 Identities=21% Similarity=0.281 Sum_probs=99.6
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCC--CCCEECCCEEEEECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 8986236850446777886422210012--31000121499951784388885166157899986664206805999983
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEI--GGITQHIGAYQVAYQGKNITFLDTPGHAAFYEMRARGARVTDIAVLVLAA 463 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~--ggitq~iga~~~~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~~ 463 (884)
T Consensus 3 ivvvG~~~vGKTSLi~r~~~~~f~~~y~pTig~~~~~k~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~ad~~ilvydi 82 (168)
T cd04119 3 VISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVYDV 82 (168)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHHHCCEEEEEECC
T ss_conf 99999599568999999963999998589765577799999999999999998999764789999998747788999508
Q ss_pred CCCCCHHHHHHHH-HHH--------HCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCC
Q ss_conf 6674023577789-899--------7099415612331244332000221000013200012347403631100247741
Q gi|254780787|r 464 DEEIMPQAIESIN-HAK--------AADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLD 534 (884)
Q Consensus 464 ~~g~~~qt~e~~~-~~~--------~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (884)
T Consensus 83 t~~~Sf~~l~~w~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~r--~v~~~~--~~~~a~~~--~~~~~E~Sak~g~~V~ 156 (168)
T cd04119 83 TDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHR--AVSEDE--GRLWAESK--GFKYFETSACTGEGVN 156 (168)
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCC--CCCHHH--HHHHHHHC--CCEEEEECCCCCCCHH
T ss_conf 97444899999999999982453456686299985403444257--889999--99999986--9989998857790889
Q ss_pred CCCCCHH
Q ss_conf 1221000
Q gi|254780787|r 535 KLLDAIL 541 (884)
Q Consensus 535 ~~~~~~~ 541 (884)
T Consensus 157 e~F~~l~ 163 (168)
T cd04119 157 EMFQTLF 163 (168)
T ss_pred HHHHHHH
T ss_conf 9999999