HHsearch alignment for GI: 254780787 and conserved domain: cd04124
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.20 E-value=1.4e-10 Score=90.29 Aligned_cols=147 Identities=19% Similarity=0.205 Sum_probs=96.3
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHC-C-CCCCEECCCEEEEECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 89862368504467778864222100-1-231000121499951784388885166157899986664206805999983
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKG-E-IGGITQHIGAYQVAYQGKNITFLDTPGHAAFYEMRARGARVTDIAVLVLAA 463 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~-e-~ggitq~iga~~~~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~~ 463 (884)
T Consensus 3 ivllGd~~VGKTsli~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDtaG~e~f~~~~~~y~~~a~~~ilvfDi 82 (161)
T cd04124 3 IILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVFDV 82 (161)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCCCCCHHHHHHHCCCCEEEEEEEC
T ss_conf 99999899678999999980977997266541579999999999999999997999843432469973568767999968
Q ss_pred CCCCCHHHHHHHH-HHH--HCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCH
Q ss_conf 6674023577789-899--7099415612331244332000221000013200012347403631100247741122100
Q gi|254780787|r 464 DEEIMPQAIESIN-HAK--AADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLDKLLDAI 540 (884)
Q Consensus 464 ~~g~~~qt~e~~~-~~~--~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (884)
T Consensus 83 t~~~Sf~~~~~w~~~i~~~~~~~p~ilVgNK~DL~~~~----~~~~---~~~a~~~--~~~f~etSAk~g~nV~e~F~~l 153 (161)
T cd04124 83 TRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPSV----TQKK---FNFAEKH--NLPLYYVSAADGTNVVKLFQDA 153 (161)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHH----HHHH---HHHHHHC--CCEEEEEECCCCCCHHHHHHHH
T ss_conf 97788999999999999868699899999971177425----8999---9999986--9919999078380979999999
Q ss_pred H
Q ss_conf 0
Q gi|254780787|r 541 L 541 (884)
Q Consensus 541 ~ 541 (884)
T Consensus 154 ~ 154 (161)
T cd04124 154 I 154 (161)
T ss_pred H
T ss_conf 9