HHsearch alignment for GI: 254780787 and conserved domain: cd04129
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.05 E-value=5.8e-10 Score=86.12 Aligned_cols=148 Identities=20% Similarity=0.279 Sum_probs=96.7
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEEEE---ECCC--CEEEEEECCCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 8986236850446777886422210012310001214999---5178--4388885166157899986664206805999
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAYQV---AYQG--KNITFLDTPGHAAFYEMRARGARVTDIAVLV 460 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~~~---~~~~--~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilv 460 (884)
T Consensus 4 ivllGd~~VGKTsLi~r~~~~~f~~----~y~pTi~~~~~~~i~v~~~~v~l~iwDTaG~e~~~~~~~~~~~~a~~~ilv 79 (187)
T cd04129 4 LVIVGDGACGKTSLLSVFTLGEFPE----EYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIG 79 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCC----CCCCCEEEEEEEEEEECCEEEEEEEEECCCCCCCCCCCCCEECCCCEEEEE
T ss_conf 9999989976899999998298999----878866789899999999999999997888703454604123388589997
Q ss_pred EECCCCCCHHHHHHHH-----HHHH--CCCCEEEECCCCCCCCCCCCHHH----HH--HHCCCCCCCCCCCCCEEEEEEE
Q ss_conf 9836674023577789-----8997--09941561233124433200022----10--0001320001234740363110
Q gi|254780787|r 461 LAADEEIMPQAIESIN-----HAKA--ADVSIIVAINKIDKLGADPQKVR----MS--LLKHDVFVESMGGDILDVEISA 527 (884)
Q Consensus 461 v~~~~g~~~qt~e~~~-----~~~~--~~~p~iva~nk~d~~~~~~~~~~----~~--~~~~~~~~~~~~~~~~~~~~~~ 527 (884)
T Consensus 80 ydi~~---~~Sf~~~~~~w~~~~~~~~~~~piilVGnK~DL~~~~~~~~~~~~~r~V~~~~g~~~a~~~-~~~~y~EtSA 155 (187)
T cd04129 80 FAVDT---PDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEI-GAKKYMECSA 155 (187)
T ss_pred CCCCC---HHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHC-CCCEEEEECC
T ss_conf 02698---6679999999999999858799889998860011341121112231557899999999984-9978999688
Q ss_pred CCCCCCCCCCCCHH
Q ss_conf 02477411221000
Q gi|254780787|r 528 KNNLNLDKLLDAIL 541 (884)
Q Consensus 528 ~~~~~~~~~~~~~~ 541 (884)
T Consensus 156 k~~~nV~e~F~~~~ 169 (187)
T cd04129 156 LTGEGVDDVFEAAT 169 (187)
T ss_pred CCCCCHHHHHHHHH
T ss_conf 99979899999999