HHsearch alignment for GI: 254780787 and conserved domain: cd04133
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.01 E-value=2.2e-09 Score=82.10 Aligned_cols=149 Identities=19% Similarity=0.236 Sum_probs=93.9
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEEE---EEC--CCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 898623685044677788642221001231000121499---951--784388885166157899986664206805999
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAYQ---VAY--QGKNITFLDTPGHAAFYEMRARGARVTDIAVLV 460 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~~---~~~--~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilv 460 (884)
T Consensus 4 ivllGd~~VGKTsL~~rf~~~~F~~~~~----pTi~~~~~~~i~v~~~~~~l~iwDTaG~e~~~~l~~~~y~~a~~~ilv 79 (176)
T cd04133 4 CVTVGDGAVGKTCMLICYTSNKFPTDYI----PTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 79 (176)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCC----CCEEEEEEEEEEECCEEEEEEEEECCCCCCCCHHHHHHHCCCCEEEEE
T ss_conf 9998999977999999996598999867----853589999999999899999997999765424689872678757999
Q ss_pred EECCCCCCHHHHHH-----HHHHH--HCCCCEEEECCCCCCCCCCCCH---HHH-HHH-CCCCCCCCCCCCCEEEEEEEC
Q ss_conf 98366740235777-----89899--7099415612331244332000---221-000-013200012347403631100
Q gi|254780787|r 461 LAADEEIMPQAIES-----INHAK--AADVSIIVAINKIDKLGADPQK---VRM-SLL-KHDVFVESMGGDILDVEISAK 528 (884)
Q Consensus 461 v~~~~g~~~qt~e~-----~~~~~--~~~~p~iva~nk~d~~~~~~~~---~~~-~~~-~~~~~~~~~~~~~~~~~~~~~ 528 (884)
T Consensus 80 ydi~~~---~Sf~~~~~~w~~~~~~~~~~~piilvGnK~DL~~~r~~~~~~~~~~~Vs~~e~~~~a~~~~~~~y~EtSAk 156 (176)
T cd04133 80 FSLISR---ASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSK 156 (176)
T ss_pred EECCCH---HHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHCHHHHHHCCCCCCCCHHHHHHHHHHCCCCEEEEECCC
T ss_conf 978987---89999999999999986849988999986320212223333024677779999999997799789994789
Q ss_pred CCCCCCCCCCCHH
Q ss_conf 2477411221000
Q gi|254780787|r 529 NNLNLDKLLDAIL 541 (884)
Q Consensus 529 ~~~~~~~~~~~~~ 541 (884)
T Consensus 157 ~~~nV~e~F~~~~ 169 (176)
T cd04133 157 TQQNVKAVFDAAI 169 (176)
T ss_pred CCCCHHHHHHHHH
T ss_conf 8809899999999