HHsearch alignment for GI: 254780787 and conserved domain: cd04136
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.16 E-value=3.3e-10 Score=87.81 Aligned_cols=143 Identities=21% Similarity=0.248 Sum_probs=97.8
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEEE---EECCC--CEEEEEECCCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 898623685044677788642221001231000121499---95178--4388885166157899986664206805999
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAYQ---VAYQG--KNITFLDTPGHAAFYEMRARGARVTDIAVLV 460 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~~---~~~~~--~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilv 460 (884)
T Consensus 4 ivllGd~~VGKTsli~r~~~~~f~~~y~~--T--i~~~~~k~i~~~~~~~~l~iwDtaG~e~~~~~~~~y~~~a~~~ilv 79 (163)
T cd04136 4 VVVLGSGGVGKSALTVQFVQGIFVEKYDP--T--IEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLV 79 (163)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCCC--C--CCCEEEEEEEECCEEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEE
T ss_conf 99989999889999999971959886699--5--4206999999999999998645765445556789883468769997
Q ss_pred EECCCCCCHHHHHHHHHHH--------HCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCC
Q ss_conf 9836674023577789899--------70994156123312443320002210000132000123474036311002477
Q gi|254780787|r 461 LAADEEIMPQAIESINHAK--------AADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLN 532 (884)
Q Consensus 461 v~~~~g~~~qt~e~~~~~~--------~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (884)
T Consensus 80 ydvt~---~~Sf~~l~~~~~~i~~~~~~~~~piilVGnK~Dl~~~r--~v~~~~--~~~~a~~~~--~~~~E~SAk~~~n 150 (163)
T cd04136 80 YSITS---QSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDER--VVSREE--GQALARQWG--CPFYETSAKSKIN 150 (163)
T ss_pred ECCCC---HHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHC--CCCHHH--HHHHHHHCC--CEEEEECCCCCCC
T ss_conf 04898---89999999999999986188888678762354726407--899999--999999849--9899974487805
Q ss_pred CCCCCCCHH
Q ss_conf 411221000
Q gi|254780787|r 533 LDKLLDAIL 541 (884)
Q Consensus 533 ~~~~~~~~~ 541 (884)
T Consensus 151 V~e~F~~l~ 159 (163)
T cd04136 151 VDEVFADLV 159 (163)
T ss_pred HHHHHHHHH
T ss_conf 899999999