HHsearch alignment for GI: 254780787 and conserved domain: cd04136

>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.16  E-value=3.3e-10  Score=87.81  Aligned_cols=143  Identities=21%  Similarity=0.248  Sum_probs=97.8

Q ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEEE---EECCC--CEEEEEECCCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             898623685044677788642221001231000121499---95178--4388885166157899986664206805999
Q gi|254780787|r  386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAYQ---VAYQG--KNITFLDTPGHAAFYEMRARGARVTDIAVLV  460 (884)
Q Consensus       386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~~---~~~~~--~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilv  460 (884)
T Consensus         4 ivllGd~~VGKTsli~r~~~~~f~~~y~~--T--i~~~~~k~i~~~~~~~~l~iwDtaG~e~~~~~~~~y~~~a~~~ilv   79 (163)
T cd04136           4 VVVLGSGGVGKSALTVQFVQGIFVEKYDP--T--IEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLV   79 (163)
T ss_pred             EEEECCCCCCHHHHHHHHHHCCCCCCCCC--C--CCCEEEEEEEECCEEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEE
T ss_conf             99989999889999999971959886699--5--4206999999999999998645765445556789883468769997


Q ss_pred             EECCCCCCHHHHHHHHHHH--------HCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCC
Q ss_conf             9836674023577789899--------70994156123312443320002210000132000123474036311002477
Q gi|254780787|r  461 LAADEEIMPQAIESINHAK--------AADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLN  532 (884)
Q Consensus       461 v~~~~g~~~qt~e~~~~~~--------~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  532 (884)
T Consensus        80 ydvt~---~~Sf~~l~~~~~~i~~~~~~~~~piilVGnK~Dl~~~r--~v~~~~--~~~~a~~~~--~~~~E~SAk~~~n  150 (163)
T cd04136          80 YSITS---QSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDER--VVSREE--GQALARQWG--CPFYETSAKSKIN  150 (163)
T ss_pred             ECCCC---HHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHC--CCCHHH--HHHHHHHCC--CEEEEECCCCCCC
T ss_conf             04898---89999999999999986188888678762354726407--899999--999999849--9899974487805


Q ss_pred             CCCCCCCHH
Q ss_conf             411221000
Q gi|254780787|r  533 LDKLLDAIL  541 (884)
Q Consensus       533 ~~~~~~~~~  541 (884)
T Consensus       151 V~e~F~~l~  159 (163)
T cd04136         151 VDEVFADLV  159 (163)
T ss_pred             HHHHHHHHH
T ss_conf             899999999