HHsearch alignment for GI: 254780787 and conserved domain: cd04140

>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.05  E-value=7.4e-10  Score=85.40  Aligned_cols=146  Identities=21%  Similarity=0.223  Sum_probs=95.3

Q ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEEE---EECC--CCEEEEEECCCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             898623685044677788642221001231000121499---9517--84388885166157899986664206805999
Q gi|254780787|r  386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAYQ---VAYQ--GKNITFLDTPGHAAFYEMRARGARVTDIAVLV  460 (884)
Q Consensus       386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~~---~~~~--~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilv  460 (884)
T Consensus         4 ivllGd~~VGKTsli~r~~~~~F~~~y----~~Ti~~~~~~~i~~~~~~~~l~iwDtaG~e~~~~l~~~~~~~a~~~ilv   79 (165)
T cd04140           4 VVVFGAGGVGKSSLVLRFVKGTFRESY----IPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILV   79 (165)
T ss_pred             EEEECCCCCCHHHHHHHHHHCCCCCCC----CCCCCCEEEEEEEECCEEEEEEEEECCCCCCCCCCHHHHHCCCCEEEEE
T ss_conf             999899997699999999649699986----8845420558999999999999998999846542324450688579998


Q ss_pred             EECCCCCCHHHHHH----HHHHHH---CCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCC
Q ss_conf             98366740235777----898997---09941561233124433200022100001320001234740363110024774
Q gi|254780787|r  461 LAADEEIMPQAIES----INHAKA---ADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNL  533 (884)
Q Consensus       461 v~~~~g~~~qt~e~----~~~~~~---~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  533 (884)
T Consensus        80 ydit~~~Sf~~~~~~~~~i~~~~~~~~~~~piilVgNK~Dl~~~r--~V~~~e~~--~~a~~~--~~~~~E~SAk~~~nV  153 (165)
T cd04140          80 YSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKR--EVSSNEGA--ACATEW--NCAFMETSAKTNHNV  153 (165)
T ss_pred             ECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCC--CCCHHHHH--HHHHHC--CCEEEEECCCCCCCH
T ss_conf             138987899999999999999961588888789986424640027--88999999--999986--988999744779487


Q ss_pred             CCCCCCHH
Q ss_conf             11221000
Q gi|254780787|r  534 DKLLDAIL  541 (884)
Q Consensus       534 ~~~~~~~~  541 (884)
T Consensus       154 ~e~F~~l~  161 (165)
T cd04140         154 QELFQELL  161 (165)
T ss_pred             HHHHHHHH
T ss_conf             99999998