HHsearch alignment for GI: 254780787 and conserved domain: cd04142

>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=98.96  E-value=6.8e-09  Score=78.78  Aligned_cols=151  Identities=23%  Similarity=0.246  Sum_probs=94.5

Q ss_pred             EEEEECCCCCHHHHHHHHHH-HHHHHCCCCCCEECCCEE--EEECCC--CEEEEEECCCHHH--------HHHHHHHHHH
Q ss_conf             89862368504467778864-222100123100012149--995178--4388885166157--------8999866642
Q gi|254780787|r  386 VTIMGHVDHGKTSLLDAIRK-ADVAKGEIGGITQHIGAY--QVAYQG--KNITFLDTPGHAA--------FYEMRARGAR  452 (884)
Q Consensus       386 v~v~ghvd~GKt~lld~~r~-~~~~~~e~ggitq~iga~--~~~~~~--~~~~~iDtPGh~~--------f~~~r~rg~~  452 (884)
T Consensus         3 ivvlG~~gVGKTsli~rf~~~~F~~~y~p---Tig~~~~~k~v~~dg~~~~l~IwDtag~~~~~~tagqe~~~~r~~~ir   79 (198)
T cd04142           3 VAVLGAPGVGKTAIVRQFLAQEFPEEYIP---TEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLR   79 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHCCCCCCCCC---CCCEEEEEEEEEECCEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHCC
T ss_conf             99999799899999999971988887478---466167899999999999999995877304555652123555644014


Q ss_pred             CCCCEEEEEECCCCCCHHHHHHHH-HH---H---HCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEE
Q ss_conf             068059999836674023577789-89---9---7099415612331244332000221000013200012347403631
Q gi|254780787|r  453 VTDIAVLVLAADEEIMPQAIESIN-HA---K---AADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEI  525 (884)
Q Consensus       453 ~~d~~ilvv~~~~g~~~qt~e~~~-~~---~---~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  525 (884)
T Consensus        80 ~a~~~ilVydvt~~~SF~~v~~~~~~i~~~~~~~~~~~piiLVGNK~DL~~~R--~v~~~~~~~--~a-~~~~~~~f~Et  154 (198)
T cd04142          80 NSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHR--FAPRHVLSV--LV-RKSWKCGYLEC  154 (198)
T ss_pred             CCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCC--CCCHHHHHH--HH-HHCCCCEEEEC
T ss_conf             68889999988677888999999999999851479998289983454310035--688999999--99-85199769988


Q ss_pred             EECCCCCCCCCCCCHHCCC
Q ss_conf             1002477411221000023
Q gi|254780787|r  526 SAKNNLNLDKLLDAILLQA  544 (884)
Q Consensus       526 ~~~~~~~~~~~~~~~~~~~  544 (884)
T Consensus       155 SAK~~~nV~~~F~~lvr~i  173 (198)
T cd04142         155 SAKYNWHILLLFKELLISA  173 (198)
T ss_pred             CCCCCCCHHHHHHHHHHHH
T ss_conf             7889969899999999999