HHsearch alignment for GI: 254780787 and conserved domain: cd04142
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=98.96 E-value=6.8e-09 Score=78.78 Aligned_cols=151 Identities=23% Similarity=0.246 Sum_probs=94.5
Q ss_pred EEEEECCCCCHHHHHHHHHH-HHHHHCCCCCCEECCCEE--EEECCC--CEEEEEECCCHHH--------HHHHHHHHHH
Q ss_conf 89862368504467778864-222100123100012149--995178--4388885166157--------8999866642
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRK-ADVAKGEIGGITQHIGAY--QVAYQG--KNITFLDTPGHAA--------FYEMRARGAR 452 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~-~~~~~~e~ggitq~iga~--~~~~~~--~~~~~iDtPGh~~--------f~~~r~rg~~ 452 (884)
T Consensus 3 ivvlG~~gVGKTsli~rf~~~~F~~~y~p---Tig~~~~~k~v~~dg~~~~l~IwDtag~~~~~~tagqe~~~~r~~~ir 79 (198)
T cd04142 3 VAVLGAPGVGKTAIVRQFLAQEFPEEYIP---TEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLR 79 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCCC---CCCEEEEEEEEEECCEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHCC
T ss_conf 99999799899999999971988887478---466167899999999999999995877304555652123555644014
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHH-HH---H---HCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEE
Q ss_conf 068059999836674023577789-89---9---7099415612331244332000221000013200012347403631
Q gi|254780787|r 453 VTDIAVLVLAADEEIMPQAIESIN-HA---K---AADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEI 525 (884)
Q Consensus 453 ~~d~~ilvv~~~~g~~~qt~e~~~-~~---~---~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 525 (884)
T Consensus 80 ~a~~~ilVydvt~~~SF~~v~~~~~~i~~~~~~~~~~~piiLVGNK~DL~~~R--~v~~~~~~~--~a-~~~~~~~f~Et 154 (198)
T cd04142 80 NSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHR--FAPRHVLSV--LV-RKSWKCGYLEC 154 (198)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCC--CCCHHHHHH--HH-HHCCCCEEEEC
T ss_conf 68889999988677888999999999999851479998289983454310035--688999999--99-85199769988
Q ss_pred EECCCCCCCCCCCCHHCCC
Q ss_conf 1002477411221000023
Q gi|254780787|r 526 SAKNNLNLDKLLDAILLQA 544 (884)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~ 544 (884)
T Consensus 155 SAK~~~nV~~~F~~lvr~i 173 (198)
T cd04142 155 SAKYNWHILLLFKELLISA 173 (198)
T ss_pred CCCCCCCHHHHHHHHHHHH
T ss_conf 7889969899999999999