HHsearch alignment for GI: 254780787 and conserved domain: cd04148

>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=98.89  E-value=1e-08  Score=77.61  Aligned_cols=150  Identities=19%  Similarity=0.182  Sum_probs=92.5

Q ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHC--C-CCCCEECCCEEEEECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf             89862368504467778864222100--1-23100012149995178438888516615789998666420680599998
Q gi|254780787|r  386 VTIMGHVDHGKTSLLDAIRKADVAKG--E-IGGITQHIGAYQVAYQGKNITFLDTPGHAAFYEMRARGARVTDIAVLVLA  462 (884)
Q Consensus       386 v~v~ghvd~GKt~lld~~r~~~~~~~--e-~ggitq~iga~~~~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~  462 (884)
T Consensus         3 VvllGd~gVGKTSLi~rf~~~~f~~~~y~~t~~~d~~~k~v~vd~~~~~l~i~Dt~g~e~~~~~~~~~-~~ada~ilVYd   81 (221)
T cd04148           3 VVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEMWTEDSCMQ-YQGDAFVVVYS   81 (221)
T ss_pred             EEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHH-HCCCEEEEEEE
T ss_conf             99999899709999999981986986678744248899999999999899999898731266665653-06868999996


Q ss_pred             CCCCCCHHHHHHH-HHHHH----CCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCC
Q ss_conf             3667402357778-98997----099415612331244332000221000013200012347403631100247741122
Q gi|254780787|r  463 ADEEIMPQAIESI-NHAKA----ADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLDKLL  537 (884)
Q Consensus       463 ~~~g~~~qt~e~~-~~~~~----~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  537 (884)
T Consensus        82 vtdr~SF~~~~~~~~~l~~~~~~~~~piILVGNK~DL~~~--R~Vs~eEg--~~~A~~~--~~~F~EtSAk~~~NV~elF  155 (221)
T cd04148          82 VTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARS--REVSVQEG--RACAVVF--DCKFIETSAGLQHNVDELL  155 (221)
T ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHH--CCCCHHHH--HHHHHHC--CCEEEECCCCCCCCHHHHH
T ss_conf             4667788889999999998648999519998535666863--89999999--9999985--9989994579994989999


Q ss_pred             CCHHC
Q ss_conf             10000
Q gi|254780787|r  538 DAILL  542 (884)
Q Consensus       538 ~~~~~  542 (884)
T Consensus       156 ~~lvr  160 (221)
T cd04148         156 EGIVR  160 (221)
T ss_pred             HHHHH
T ss_conf             99999