HHsearch alignment for GI: 254780787 and conserved domain: cd04148
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=98.89 E-value=1e-08 Score=77.61 Aligned_cols=150 Identities=19% Similarity=0.182 Sum_probs=92.5
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHC--C-CCCCEECCCEEEEECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 89862368504467778864222100--1-23100012149995178438888516615789998666420680599998
Q gi|254780787|r 386 VTIMGHVDHGKTSLLDAIRKADVAKG--E-IGGITQHIGAYQVAYQGKNITFLDTPGHAAFYEMRARGARVTDIAVLVLA 462 (884)
Q Consensus 386 v~v~ghvd~GKt~lld~~r~~~~~~~--e-~ggitq~iga~~~~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~ 462 (884)
T Consensus 3 VvllGd~gVGKTSLi~rf~~~~f~~~~y~~t~~~d~~~k~v~vd~~~~~l~i~Dt~g~e~~~~~~~~~-~~ada~ilVYd 81 (221)
T cd04148 3 VVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEMWTEDSCMQ-YQGDAFVVVYS 81 (221)
T ss_pred EEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHH-HCCCEEEEEEE
T ss_conf 99999899709999999981986986678744248899999999999899999898731266665653-06868999996
Q ss_pred CCCCCCHHHHHHH-HHHHH----CCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCC
Q ss_conf 3667402357778-98997----099415612331244332000221000013200012347403631100247741122
Q gi|254780787|r 463 ADEEIMPQAIESI-NHAKA----ADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLDKLL 537 (884)
Q Consensus 463 ~~~g~~~qt~e~~-~~~~~----~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (884)
T Consensus 82 vtdr~SF~~~~~~~~~l~~~~~~~~~piILVGNK~DL~~~--R~Vs~eEg--~~~A~~~--~~~F~EtSAk~~~NV~elF 155 (221)
T cd04148 82 VTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARS--REVSVQEG--RACAVVF--DCKFIETSAGLQHNVDELL 155 (221)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHH--CCCCHHHH--HHHHHHC--CCEEEECCCCCCCCHHHHH
T ss_conf 4667788889999999998648999519998535666863--89999999--9999985--9989994579994989999
Q ss_pred CCHHC
Q ss_conf 10000
Q gi|254780787|r 538 DAILL 542 (884)
Q Consensus 538 ~~~~~ 542 (884)
T Consensus 156 ~~lvr 160 (221)
T cd04148 156 EGIVR 160 (221)
T ss_pred HHHHH
T ss_conf 99999