HHsearch alignment for GI: 254780787 and conserved domain: cd04152

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.37  E-value=1.8e-12  Score=103.33  Aligned_cols=149  Identities=19%  Similarity=0.203  Sum_probs=98.5

Q ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEE--EEE-----CCCCEEEEEECCCHHHHHHHHHHHHHCCCCEE
Q ss_conf             89862368504467778864222100123100012149--995-----17843888851661578999866642068059
Q gi|254780787|r  386 VTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAY--QVA-----YQGKNITFLDTPGHAAFYEMRARGARVTDIAV  458 (884)
Q Consensus       386 v~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~--~~~-----~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~i  458 (884)
T Consensus         6 IvilG~~~~GKTsil~r~~~~~f~-----~~~pTiG~~~~~~~~~~~~~~~v~l~iwDtaGqe~~r~l~~~Y~r~a~g~i   80 (183)
T cd04152           6 IVMLGLDSAGKTTVLYRLKFNEFV-----NTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIV   80 (183)
T ss_pred             EEEECCCCCCHHHHHHHHHCCCCC-----CCCCCCCEEEEEEEEECCCCCEEEEEEEECCCCCCCCEEHHHHHCCCCEEE
T ss_conf             999999999889999999649867-----768703557899999616786679999978987345100876746786789


Q ss_pred             EEEECCCCC-CHHHHHHH----HHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCC
Q ss_conf             999836674-02357778----9899709941561233124433200022100001320001234740363110024774
Q gi|254780787|r  459 LVLAADEEI-MPQAIESI----NHAKAADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNL  533 (884)
Q Consensus       459 lvv~~~~g~-~~qt~e~~----~~~~~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  533 (884)
T Consensus        81 ~V~D~td~~~~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~~~~~ei~~~l~l~~~--~~~~~~~i~~tSA~tG~gI  158 (183)
T cd04152          81 FVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLALHEL--SASTPWHVQPACAIIGEGL  158 (183)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHH--HCCCCCEEEEEECCCCCCH
T ss_conf             99967768899999999999973212379629999866777668788999999719998--6669989997279979698


Q ss_pred             CCCCCCHH
Q ss_conf             11221000
Q gi|254780787|r  534 DKLLDAIL  541 (884)
Q Consensus       534 ~~~~~~~~  541 (884)
T Consensus       159 ~e~f~~L~  166 (183)
T cd04152         159 QEGLEKLY  166 (183)
T ss_pred             HHHHHHHH
T ss_conf             99999999