HHsearch alignment for GI: 254780787 and conserved domain: cd04153

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.50  E-value=1.4e-13  Score=110.89  Aligned_cols=151  Identities=19%  Similarity=0.156  Sum_probs=108.4

Q ss_pred             EEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEEEEECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf             38986236850446777886422210012310001214999517843888851661578999866642068059999836
Q gi|254780787|r  385 VVTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAYQVAYQGKNITFLDTPGHAAFYEMRARGARVTDIAVLVLAAD  464 (884)
Q Consensus       385 vv~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~~~~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~~~  464 (884)
T Consensus        17 KililG~~~sGKTsil~~l~~~~~~~~---~pT~G~~~~~i~~~~~~~~iwD~~G~e~~~~~~~~y~~~a~~ii~VvD~s   93 (174)
T cd04153          17 KVIIVGLDNAGKTTILYQFLLGEVVHT---SPTIGSNVEEIVYKNIRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDST   93 (174)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCCCCC---CCCCCCCEEEEEECCEEEEEEECCCCCCCCCHHHHHHCCCCEEEEEEECC
T ss_conf             999998999988999999973992771---67236046999978889999989998656622677705775379999767


Q ss_pred             CCC-CHHHHHHHHHHH----HCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCC
Q ss_conf             674-023577789899----709941561233124433200022100001320001234740363110024774112210
Q gi|254780787|r  465 EEI-MPQAIESINHAK----AADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLDKLLDA  539 (884)
Q Consensus       465 ~g~-~~qt~e~~~~~~----~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  539 (884)
T Consensus        94 d~~~~~~~~~~l~~~l~~~~~~~~pili~~NK~Dl~~~~~~~e---i~~~l~l~~~~~~~~~~~~~SAktG~Gv~e~f~w  170 (174)
T cd04153          94 DRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAE---ISESLGLTSIRDHTWHIQGCCALTGEGLPEGLDW  170 (174)
T ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCHHH---HHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHH
T ss_conf             8889999999999997261016982899995555655789999---9999747776359809999668589198999999


Q ss_pred             HH
Q ss_conf             00
Q gi|254780787|r  540 IL  541 (884)
Q Consensus       540 ~~  541 (884)
T Consensus       171 La  172 (174)
T cd04153         171 IA  172 (174)
T ss_pred             HH
T ss_conf             86