HHsearch alignment for GI: 254780787 and conserved domain: cd04153
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.50 E-value=1.4e-13 Score=110.89 Aligned_cols=151 Identities=19% Similarity=0.156 Sum_probs=108.4
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCEEEEECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 38986236850446777886422210012310001214999517843888851661578999866642068059999836
Q gi|254780787|r 385 VVTIMGHVDHGKTSLLDAIRKADVAKGEIGGITQHIGAYQVAYQGKNITFLDTPGHAAFYEMRARGARVTDIAVLVLAAD 464 (884)
Q Consensus 385 vv~v~ghvd~GKt~lld~~r~~~~~~~e~ggitq~iga~~~~~~~~~~~~iDtPGh~~f~~~r~rg~~~~d~~ilvv~~~ 464 (884)
T Consensus 17 KililG~~~sGKTsil~~l~~~~~~~~---~pT~G~~~~~i~~~~~~~~iwD~~G~e~~~~~~~~y~~~a~~ii~VvD~s 93 (174)
T cd04153 17 KVIIVGLDNAGKTTILYQFLLGEVVHT---SPTIGSNVEEIVYKNIRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDST 93 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCC---CCCCCCCEEEEEECCEEEEEEECCCCCCCCCHHHHHHCCCCEEEEEEECC
T ss_conf 999998999988999999973992771---67236046999978889999989998656622677705775379999767
Q ss_pred CCC-CHHHHHHHHHHH----HCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCC
Q ss_conf 674-023577789899----709941561233124433200022100001320001234740363110024774112210
Q gi|254780787|r 465 EEI-MPQAIESINHAK----AADVSIIVAINKIDKLGADPQKVRMSLLKHDVFVESMGGDILDVEISAKNNLNLDKLLDA 539 (884)
Q Consensus 465 ~g~-~~qt~e~~~~~~----~~~~p~iva~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (884)
T Consensus 94 d~~~~~~~~~~l~~~l~~~~~~~~pili~~NK~Dl~~~~~~~e---i~~~l~l~~~~~~~~~~~~~SAktG~Gv~e~f~w 170 (174)
T cd04153 94 DRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAE---ISESLGLTSIRDHTWHIQGCCALTGEGLPEGLDW 170 (174)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCHHH---HHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHH
T ss_conf 8889999999999997261016982899995555655789999---9999747776359809999668589198999999
Q ss_pred HH
Q ss_conf 00
Q gi|254780787|r 540 IL 541 (884)
Q Consensus 540 ~~ 541 (884)
T Consensus 171 La 172 (174)
T cd04153 171 IA 172 (174)
T ss_pred HH
T ss_conf 86